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Epigenetics

Epigenetics is the study of heritable changes in gene expression that are not encoded in the DNA of the genome. Encouraging evidence has linked epigenetic effects to oncogenesis, progression and treatment of cancer (1), the regulation of development and function of the nervous system (2), gene regulation (3), cellular stress events (3), nutrigenomics (4), aging and DNA repair (5). Considerable ongoing efforts are directed towards identifying the dynamic functions of various modifications to DNA and its associated proteins and elucidating their mechanisms.

  1. Baylin, S. and Jones, P. (2011) Nature Rev Cancer (10), 726-734. PMID: 21941284 
  2. Riccio, A., (2010) Nature Neuroscience, 13, 1330-1337. PMID: 20975757 
  3. Huang, J. et al. (2006) Nature, 444, 629-632. PMID: 17108971 
  4. Park, L.K., Friso, S. and Choi, S.W. (2011) Proc. Nutr. Soc. Nov 4, 1-9. 
  5. Pahlich, S., Zakaryan, R.P. and Gehring., H. (2006) Biochim, Biophys. Acta. 1764, 1890-1903. PMID: 17010682

Epigenetics includes these areas of focus:

Control DNA for Epigenetics
Restriction Enzymes for Epigenetics
DNA Methylation Analysis
5-hmC Detection & Analysis
Methylated DNA Analysis
Bisulfite Conversion
Histones & Nucleosome Assembly
DNA Enrichment
Antibodies
Histone Methyltransferases
ChIP

FAQs for Epigenetics

    Publications related to Epigenetics

  1. Mooijman D, Dey S S, Boisset JC, Crosetto N, van Oudenaarden A 2016. Single-cell 5hmC sequencing reveals chromosome-wide cell-to-cell variability and enables lineage reconstruction Nature Biotechnology. 34, PubMedID: 27347753, DOI: 10.1038/nbt.3598
  2. Marx V. 2016. Genetics: profiling DNA methylation and beyond Nature Methods. 13, PubMedID: , DOI: 10.1038/nmeth.3736
  3. Estève P., Zhang G., Ponnaluri V., Kanneganti 2015. Binding of 14-3-3 reader proteins to phosphorylated DNMT1 facilitates Nucleic Acids Res. , PubMedID: 26553800, DOI: 10.1093/nar/gkv1162
  4. Page A., Paoli P., Salvador E., White S., French J., Mann J. 2015. Hepatic Stellate Cell Transdifferentiation Involves Genome-Wide Remodeling of the DNA Methylation Landscape J Hepatol. , PubMedID: 26632634, DOI: 10.1016/j.jhep.2015.11.024
  5. Kienhöfer S., Musheev M., Stapf U., Helm M., Schomacher L., Niehrs C., Schäfer A. 2015. GADD45a physically and functionally interacts with TET1Publication Differentiation. , PubMedID: 26546041, DOI: 10.1016/j.diff.2015.10.003
  6. Wee E., Ngo T., Trau M. 2015. A simple bridging flocculation assay for rapid, sensitive and stringent detection of gene specific DNA methylation Sci Rep. 5, PubMedID: 26458746, DOI: 10.1038/srep15028
  7. Chernov AV., Reyes L., Peterson S., Strongin AY. 2015. Depletion of CG-Specific Methylation in Mycoplasma hyorhinis Genomic DNA after Host Cell Invasion PLoS One. 10, PubMedID: 26544880, DOI: 10.1371/journal.pone.0142529
  8. Chandra S, Baribault C, Lacey M, Ehrlich M 2014. Myogenic differential methylation: diverse associations with chromatin structure Biology (Basel). 3(2), PubMedID: 24949935, DOI: 10.3390/biology3020426
  9. Hughes J.R., Roberts N., McGowan S., Hay D., Giannoulatou E., Lynch M., De Gobbi M., Taylor S., Gibbons R., Higgs D.R. 2014. Analysis of hundreds of cis-regulatory landscapes at high resolution in a single, high-throughput experiment Nat Genet. 46 (2), PubMedID: 24413732, DOI: doi:10.1038/ng.2871
  10. Sexton T, Kurukuti S, Mitchell JA, Umlauf D, Nagano T, Fraser P 2012. Sensitive detection of chromatin coassociations using enhanced chromosome conformation capture on chip Nat Protoc. 7(7), PubMedID: 22722369, DOI: 10.1038/nprot.2012.071
  11. Wolff, E.M. et al. 2011. Hypomethylation of a LINE-1 Promoter Activates an Alternate Transcript of the MET Oncogene in Bladders with Cancer PLoS Genet. . 6, PubMedID: 20421991, DOI:
  12. Lieberman-Aiden E., van Berkum N., Williams L., Imakaev M., Ragoczy T., Telling A., Amit I., Lajoie B., Sabo P., Dorschner M., Sandstrom R., Bernstein B., BenderM. A., Groudine M., Gnirke A., Stamatoyannopoulos J., Mirny L., Lander E., Dekker J. 2009. Comprehensive mapping of long range interactions reveals folding principles of the human genome Science. Oct 9; 326(5950) , PubMedID: , DOI:

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  1. What is Epigenetics?

    What Is Epigenetics?

    If all cells are created from the same genetic material, why are there so many different cell types? Listen to Sriharsa Pradhan, Senior Scientist, RNA Biology at NEB, as he describes how DNA is methylated and how this affects the path of reading the DNA code the same way an obstruction would derail a train off its tracks.

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    Interactive Tutorial Explaining the Phenomenon of Epigenetics at a Molecular Level

    Watch an interactive tutorial explaining the different molecular mechanisms by which epigenetic change influences gene expression. Learn about how NEB’s line of EpiMark® validated reagents are targeted to the various enzymes and DNA elements that are altered by epigenetic change.

  3. PradhanSriharsa

    Restriction Enzymes in Chromatin Conformation Capture

    Chromatin conformation capture (3C) techniques allow study of the spatial organization of eukaryotic chromosomes in a 3D context. Learn more about this and other applications of restriction enzymes.