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We believe that basic research and the cultivation of scientific knowledge is critical for us to stay connected with our customers and to drive scientific breakthroughs. At NEB, over 30 labs participate in research projects, which are aided by post-doctoral fellows and students in Masters and Ph.D. programs. NEB researchers have authored or co-authored over 1,000 publications (as of 1/17) many of which are in peer-reviewed journals. Further, NEB products have been used successfully in numerous publications by scientists throughout the world.

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Year Title Journal Authors Application(s)
2018 Core richness of N-glycans of Caenorhabditis elegans: a case study on chemical and enzymatic release Anal. Chem. Yan, S., Vanbeselaere, J., Wöls, F., et. al.
2018 Complete genome sequence and methylome analysis of Bacillus caldolyticus NEB414. Genome Announcements Fomenkov, A., Vincze, T., Mersha, F., Roberts, R.J.
2018 Light-activated chemical probing of nucleobase solvent accessibility inside cells. Nature Chemical Biology Feng, C., Chan, D., Joseph, J., Muuronen, M., Coldren, W.H., Dai, N., Corrêa, I.R., Jr., Furche, F., Hadad, C.M., Spitale, R.C.
2018 Comparative genome and methylome analysis reveals restriction/modification system diversity in the gut commensal Bifidobacterium breve. Nucleic Acids Research Bottacini, F., Morrissey, R., Roberts, R.J., James, J., van Breen, J., Egan, M., Lambert, J., van Limpt, K., Knol, J., O'Connell Motherway, M. and van Sinderen, D.
2018 The non-specific adenine DNA methyltransferase M.EcoGII. Nucleic Acids Res Murray IA
2018 Evolutionary analysis indicates that DNA alkylation damage is a byproduct of cytosine DNA methyltransferase activity Nat Genet Rošić S
2018 Epigenetic reprogramming enables the transition from primordial germ cell to gonocyte Nature Hill PWS
2018 Identification and biosynthesis of thymidine hypermodifications in the genomic DNA of widespread bacterial viruses Proc Natl Acad Sci U S A Lee YJ et al.
2018 A mitochondrial manganese superoxide dismutase involved in innate immunity is essential for the survival of Chlamys farreri Fish Shellfish Immunology Wang M, Wang B, Jiang K, Liu M, Shi X, Wang L.
2018 Host-associated selection of a P3 mutant of zucchini yellow mosaic virus affects viral infectivity in watermelon Archives of Virology Kang B, Peng B, Wu H, Liu L, Wu W, Gu Q.
2018 NUP98-BPTF gene fusion identified in primary refractory acute megakaryoblastic leukemia of infancy Genes, Chromosomes, & Cancer Roussy M, Bilodeau M, Jouan L, Tibout P, Laramée L, Lemyre E, Cardin S, Sauvageau C, Couture F, Choblet A, Patey N, Gendron P, Duval M, Teira P, Hébert J, Wilhelm BT, Choi JK, Gruber TA, Bittencourt H, Cellot S.
2018 LytM factor Alr3353 affects filament morphology and cell-cell communication in the multicellular cyanobacterium Anabaena sp. PCC 7120 Molecular Microbiology Bornikoel J, Staiger J, Madlung J, Forchhammer K, Maldener I.
2018 Epigenetic reprogramming enables the transition from primordial germ cell to gonocyte Nature Hill, P.W.S., Leitch, H.G., Requena, C.E., Sun, Z., Amouroux, R., Roman-Trufero, M., Borkowska, M., Terragni, J., Vaisvila, R., Linnett, S. Bagci, H., Dharmalingham, G., Haberle, V., Lenhard, B., Zheng, Y., Pradhan, S., Hajkova, P.
2018 Identification and biosynthesis of thymidine hypermodifications in the genomic DNA of widespread bacterial viruses Proc. Natl. Acad. Sci. Lee, Y.J., Dai, N., Walsh, S.E., Müller, S., Fraser, M.E., Kauffman, K.M., Guan, C., Corrêa, I.R., Jr., Weigele, P.R.
2018 Targeting GLP-1 receptor trafficking to improve agonist efficacy Nat. Commun. 9(1): 1602. doi: 10.1038/s41467-018-03941-2 Jones, B., Buenaventura, T., Kanda, N., Chabosseau, P., Owen, B.M., Scott, R., Goldin, R., Angkathunyakul, N., Corr​êa, I.R., Jr., Bosco, D., Johnson, P.R., Piemonti, L., Marchetti, P., Shapiro, A.M.J., Cochran, B.J., Hanyaloglu, A.C., Inoue, A., Tan, T., Rutter, G.A., Tomas, A., Bloom, S.R.
2018 Complete genome sequence of the freshwater bacterium Beggiatoa leptomitoformis strain D-401 Genome Announcements 6(17): e00311-18. doi: 10.1128/genomeA.00311-18 Fomenkov, A., Sun, Z., Vincze, T. Dubinina, G., Orlova, M., Tarlachkov, S.V., Anton, B.P., Grabovich, M.Y., Roberts, R.J.
2017 The advantages of SMRT™ sequencing.  Genome Biology Roberts, R.J., Carneiro, M.O., Schatz, M.C.
2017 ​Colorimetric tests for diagnosis of filarial infection and vector surveillance using non-instrumented nucleic acid loop-mediated isothermal amplification (NINA-LAMP). PLoS One Poole, C.B., Li, Z., Alhassan, A., Guelig, D., Diesburg, S., Tanner, N.A., Zhang, Y., Evans, T.C. Jr., LaBarre, P., Wanji, S., Burton R.A. and Carlow, C.K.
2017 Examining Sources of Error in PCR by Single-Molecule Sequencing. PLoS ONE Potapov Vladamir, Ong Jennifer L
2017 Rapid Time Scale Analysis of T4 DNA Ligase–DNA Binding. Biochemistry Bauer, R.J., Jurkiw, T.J., Evans, T.C. Jr. and Lohman, G.J.
2017 Methods for structural and functional analyses of intramembrane prenyltransferases in the UbiA superfamily Methods Enzymol Yang, Y., Ke, N., Liu, S., Li, W.
2017 Mechanism and timing of Mcm2-7 ring closure during DNA replication origin licensing Nat. Struct. Mol. Biol. Ticau, S., Friedman, L.J., Champasa, K., Correa, I.R., Jr., Gelles, J., Bell, S.P.
2017 Removing the needle from the haystack: Enrichment of Wolbachia endosymbiont transcripts from host rematode RNA by Cappable-seqTM PLoS One Luck, A.N., Slatko, B.E., Foster, J.M.
2017 NicE-seq: High resolution open chromatin profiling Genome Biology Ponnaluri, V.K.C., Zhang, G., Estève, P.-O., Spracklin, G., Sian, S., Xu, S.-Y., Benoukraf, T., Pradhan, S.
2017 High-throughput biochemical profiling reveals sequence determinants of dCas9 off-target binding and unbinding PNAS Evan A. Boyle, Johan O.L. Andreasson, Lauren M. Chircus, Samuel H. Sternberg, Michelle J. Wu, Chantal K. Guegler, Jennifer A. Doudna, and William J. Greenleaf
2017 Genome Announce Genome Announce. Fomenkov, A., Akimov, V.N., Vasilyeva, L.V., Andersen, D.T., Vincze, T., Roberts, R.J.
2017 Macrocycle peptides delineate locked-open inhibition mechanism for micoorganism phosphoglycerate mutases Nat. Commun. Yu, H., Dranchak, P., Li, Zhiru, MacArthur, R., Munson, M.S., Mehzabeen, N., Baird, N.J., Battalie, K.P., Ross, D., Lovell, Sc., Carlow, C.K.S., Suga, H., Inglese, J.
2017 Highly specific imaging of mRNA in single cells by target RNA-initiated rolling circle amplification Chem Sci Deng, Ruijie., Zhang, Kaixiang., Sun, Yupeng., Ren, Xiaojun., Li, Jinghong.
2017 The GAN exonuclease, or the flap endonuclease Fen1 and RNase HII are necessary for viability of Thermococcus kodakarensis J. Bacteriol Burkhart, B.W., Cubonova, L., Heider, M.R., Kelman, Z., Reeve, J.N., Santangelo, T.J.
2017 Targeted enrichment and sequencing of recent endosymbiont-host lateral gene transfers Sci Rep. Dunning Hotopp, J.C., Slatko, B.E., Foster, J.M.
2017 Whole genome amplification provides suitable control DNA for use in DNA barcoding applications Biop. Bourque, D.A., Naaum, A.M., Distel, D.L., Hanner, R.H.
2017 Various Mutations compensate for a deleterious lacZα insert in the replication enhancer of M13 bacteriophage PLoS One Zygiel, E.M., Noren, K.A., Adamkiewicz, M.A., Aprile, R.J., Bowditch, H.K., Carroll, C.L., Cerezo, M.A.S., Dagher, A.M., Hebert, C.R., Hebert, L.E., Mahame, G.M., Milne, S.C., Silvestri, K.M., Sutherland, S.E., Sylvia, A.M., Taveira, C.N., VanValkenburgh, D.J., Noren, C.J., Hall, M.F.
2017 Rpn (YhgA-Like) Proteins of Escherichia coli K-12 and their Contribution to Rec-A-Independent Horizontal Transfer J. Bacteriol Kingston, A.W., Ponkratz, C. and Raleigh, E.A.
2017 Restriction endonuclease AgeI is a monomer which dimerizes to cleave DNA Nucleic Acids Res. Tamulaitiene, G., Jovaisaite, V., Tamulaitis, G., Songailiene, I., Manakova, E., Zaremba, M., Grazulis, S., Xu, S.Y., Siksnys, V.
2017 Serotyping dengue virus with isothermal amplification and a portable sequencer Scientific Reports Yamagishi, J., et al.
2017 Sequential formation of two branched intermediates during protein splicing of class three inteins Extrmophiles Tori, K. and Perler, F.
2017 A refined DNA methylation detection method using MspJI coupled quantitative PCR Analytical Biochemistry Petell, C.J., Loiseau, G., Gandy, R., Pradhan, S., Gowher, H.
2017 Association of 5-hydroxymethylation and 5-methylation of DNA cytosine with tissue-specific gene expression Epigenetics Ponnaluri, V.K., Ehrlich, K.C., Zhang, G., Lacey, M., Johnston, D., Pradhan, S., Ehrlich, M.
2017 Complete genome sequence and methylome analysis of Acinetobacter calcoaceticus 65 Fomenkov, A., Vincze, T., Degtyarev, S.K., Roberts, R.J.
2017 Complete genome and methylome sequences of Salmonella enterica subsp. enterica Serovars Typhimurium, Saintpaul, and Stanleyville from the SARA/SARB collection Genome Announce Yao, K., Roberts, R.J., Allard, M.W., Hoffmann, M.
2017 EcoBLMcrX, a classical modification-dependent restriction enzyme in Escherichia coli B: Characterization in vivo and in vitro with a new approach to cleavage site determination PLoS One Fomenkov, A., Sun, Z., Dila, D.K., Anton, B.P., Roberts, R.J., Raleigh, E.A.
2017 A practical guide to the oral microbiome and its relation to health and disease Krishnan, K., Chen, T., Paster, B.J.
2017 Dynamics of 5-carboxylcytosine during hepatic differentiation: potential general role for active demethylation by DNA repair in lineage specification Lewis, L.C., Lo, P.C., Foster, J.M., Dai, N., Correa, I.R., Jr., Durczak, P.M., Duncan, G., Ramsawhook, A., Aithal, G.P., Denning, C., Hannan, N.R., Ruzov, A.
2017 Functional characterisation of cis-regulatory elements governing dynamic Eomes expression Development Simon, C.S. et al.
2017 Evaluating computatonal gene ontology annotations Methods Mol. Biol. Skunca, N., Roberts, R.J., Steffen, M.
2017 DNA damage is a pervasive cause of sequencing errors, directly confounding variant identification Science Chen, L., Liu, P., Evans, T.C., Jr., Ettwiller, L.M.
2017 Defining the RNaseH2 enzyme-initiated ribonucleotide excision repair pathway in Archaea J. Biol Chem. Heider, M.R., Burkhart, B.W., Santangelo, T.J., Gardner, A.F.
2017 DNA target recognition domains in the Type I restriction and modification systems of Staphylococcus aureus Nucl. Acids Res. Cooper, L.P., Roberts, G.A., White, J.H., Luyten, Y.A., Bower, E.K., Morgan, R.D., Roberts, R.J., Lindsay, J.A., Dryden, D.T.
2017 DNA recognition by the SwaI restriction endonuclease involves unusual distortion of an 8 base pair A:T-rich target Nucl. Acids Res. Shen, B.W., Heiter, D.F., Lunnen, K.D., Wilson, G.G., Stoddard, B.L.
2017 De novo assembly of genomes from long sequence reads reveals uncharted territories of Propionibacterium freudenreichii BMC Genomics Deptula, P., Laine, P.K., Roberts, R.J., Smolander, O.-P., Vihinen, H., Piironen, V., Paulin, L., Jokitalo, E., Savijoki, K., Auvinen, P., Varmanen, P.
2017 Restriction-modification mediated barriers to exogenous DNA uptake and incorporation employed by Prevotella intermedia Johnston, C.D., Skeete, C.A., Fomenkov, A., Roberts, R.J., Rittling, S.R.
2017 Balancing herbal medicine and functional food for prevention and treatment of cardiometabolic diseases through modulating gut microbiota Front Microbiol Lyu, M., Wang, Y.F., Fan, G.W., Wang, X.Y., Xu, S.Y., Zhu, Y.
2017 Building bridges through science Neuron Lissek, T., Adams, M., Adelman, J.
2017 Examining Sources of Error in PCR by Single-Molecule Sequencing PLOS Vladimir Potapov and Jennifer L. Ong*
2017 Examining Sources of Error in PCR by Single-Molecule Sequencing. PLOS One Vladimir Potapov, Jennifer L. Ong.
2017 Expression and comparative characterization of complete and C-terminally truncated forms of saccharifying a-amylase from Lactobacillus plantarum S21. International Journal of Biological Macromolecules Kanpiengjai A, Nguyen TH, Haltrich D, Khanongnuch C.
2017 Genetic and epigenetic insight into morphospecies in a reef coral. Molecular Ecology James L. Dimond,Sanoosh K. GamblewoodSteven B. Roberts
2017 Ultrasensitive detection of acute myeloid leukemia minimal residual disease using single molecule molecular inversion probes. Hematologica Adam Waalkes, Kelsi Penewit, Brent L. Wood, David Wu, and Stephen J. Salipante
2017 Isothermal Amplification of Long, Discrete DNA Fragments Facilitated by Single-Stranded Binding Protein Scientific Reports Zhang Y, Tanner N
2017 What is in your cup of tea? DNA Verity Test to characterize black and green commercial teas. PLOS One Olga De Castro , Maria Comparone, Antonietta Di Maio, Emanuele Del Guacchio, Bruno Menale, Jacopo Troisi, Francesco Aliberti, Marco Trifuoggi , Marco Guida
2017 First Report of the Soybean Cyst Nematode, Heterodera glycines, in New York X. Wang, G. C. Bergstrom, S. Chen, D. M. Thurston, and J. A. Cummings, and Z. A. Handoo, M. N. Hult, and A. M. Skantar,
2017 Duplex Alu Screening for Degraded DNA of Skeletal Human Remains Diversity
2017 NEBNext Human Microbiome DNA Enrichment Kit Scientific Reports 5. Thomas, T.
2017 Metabolic Incorporation of Azide Functionality into Cellular RNA Chembiochem Nainar S et al.
2017 Dynamics of 5-carboxylcytosine during hepatic differentiation: Potential general role for active demethylation by DNA repair in lineage specification. Epigenetics Lewis LC
2017 Restriction and modification of deoxyarchaeosine (dG+)-containing phage 9 g DNA. Sci Rep Tsai R et al
2017 Fidelity of RNA templated end-joining by chlorella virus DNA ligase and a novel iLock assay with improved direct RNA detection accuracy Nucleic Acids Research Krzywkowski, T., Nilsson M.
2017 Complete genome sequence of Kluyveromyces lactis strain GG799, a common yeast host for heterologous protein expression Genome Announcements Chuzel, L., Ganatra, M.B., Schermerhorn, K.M., Gardner, A.F., Anton, B.P., Taron, C.H.
2017 Using high-throughput barcode sequencing to efficiently map connectomes Nucleic Acids Research Peikon, I.D., Kebschull, J.M., Vagin, V.V., Ravens, D.I, Sun, Y.-C., Brouzes, E., Correa, I.R., Bressan, D., Zador, A.M.
2017 Complete genome sequence of Kluyveromyces lactis strain GG799, a common yeast host for heterologous protein expression Genome Announcements Chuzel, L., Ganatra, M.B., Schermerhorn, K.M., Gardner, A.F., Anton, B.P., Taron, C.H.
2017 Using high-throughput barcode sequencing to efficiently map connectomes Nucleic Acids Research Peikon, I.D., Kebschull, J.M., Vagin, V.V., Ravens, D.I, Sun, Y.-C., Brouzes, E., Correa, I.R., Bressan, D., Zador, A.M.
2017 Caenorhabditis elegans CES-1 snail represses Pig-1 MELK expression to control asymmetric cell division. Genetics Wei, H., Yan, B., Gagneur, J., Conradt, B.
2017 The gut commensal microbiome of Drosophila melanogaster is modified by the endosymbiont Wolbachia. mSphere Simhardi, R.K., Fast,E.M., Guo, R., Schultz, M.J., Vaisman, N., Ortiz, L., Bybee, J., Slatko, B.E., Frydman, H.M.
2016 Visualization of Periplasmic and Cytoplasmic Proteins with a Self-Labeling Protein Tag. J Bacteriol Ke, N., Landgraf, D., Paulsson, J. and Berkmen, M.
2016 Using glycosidases to remove, trim, or modify glycans on therapeutic proteins BioProcess International Guthrie, E.P., Magneilli, P.E.
2016 The Inhibitory Effect of Non-Substrate and Substrate DNA on the Ligation and Self-Adenylylation Reactions Catalyzed by T4 DNA Ligase. PLoS One Bauer, R.J., Evans, T.C. Jr. and Lohman, G.J.
2016 Sensitive Detection of Plasmodium vivax Using a High-Throughput, Colourimetric Loop Mediated Isothermal Amplification (HtLAMP) Platform: A Potential Novel Tool for Malaria Elimination. PLoS Negl Trop Dis Britton, S., Cheng, Q., Grigg, M.J., Poole, C.B., Pasay, C., William, T., Fornace, K., Anstey, N.M., Sutherland, C.J., Drakeley, C. and McCarthy, J.S.
2016 Sensitive and specific miRNA detection method using SplintR LigasePublication. Nucleic Acids Res. Jin, J., Vaud, S., Zhelkovsky, A.M., Posfai, J. and McReynolds, L.A.
2016 The Epigenomic Landscape of Prokaryotes. PLoS Genet. Blow, M.J., Clark, T.A., Daum, C.G., Deutschbauer, A.M., Fomenkov, A., Fries, R., Froula, J., Kang, D.D., Malmstrom, R.R., Morgan, R.D., Posfai, J., Singh, K., Visel, A., Wetmore, K., Zhao, Z., Rubin, E.M., Korlach, J., Pennacchio, L.A. and Roberts, R.J.
2016 Phenotypic and molecular analysis of the effect of 20-hydroxyecdysone on the human filarial parasite Brugia malayi. Int J Parasitol Mhashilkar, A.S., Adapa, S.R., Jiang, R.H., Williams, S.A., Zaky, W., Slatko, B.E., Luck, A.N., Moorhead, A.R. and Unnasch, T.R.
2016 Structure of Type IIL Restriction-Modification Enzyme MmeI in Complex with DNA Has Implications for Engineering New Specificities. PLoS Biol. Callahan, S.J., Luyten, Y.A., Gupta, Y.K., Wilson, G.G., Roberts, R.J., Morgan, R.D. and Aggarwal, A.K.
2016 A novel enrichment strategy reveals unprecedented number of novel transcription start sites at single base resolution in a model prokaryote and the gut microbiome. BMC Genomics Ettwiller, L., Buswell, J., Yigit, E. and Schildkraut, I
2016 A mix-and-read drop-based in vitro two-hybrid method for screening high-affinity peptide binders. Sci Rep Cui, N., Zhang, H., Schneider, N., Tao, Y., Asahara, H., Sun, Z., Cai, Y., Koehler, S.A., de Greef, T.F., Abbaspourrad, A., Weitz, D.A. and Chong, S.
2016 Absence of the filarial endosymbiont Wolbachia in seal heartworm (Acanthocheilonema spirocauda) but evidence of ancient lateral gene transfer. J Parasitol. Keroack, C.D., Wurster, J.I., Decker, C.G., Williams, K.M., Slatko, B.E., Foster, J.M. and Williams, S.A.
2016 Comprehensive Profiling of Glycosphingolipid Glycans Using a Novel Broad Specificity Endoglycoceramidase in a High-Throughput Workflow. Albrecht, S., Vainauskas, S., Stöckmann, H., McManus, C., Taron, C.H. and Rudd, P.M.
2016 Complete Genome Sequence of the Engineered Escherichia coli SHuffle Strains and Their Wild-Type Parents Genome Announc. Anton, B.P., Fomenkov, A., Raleigh, E.A. and Berkmen, M.
2016 Genetics: profiling DNA methylation and beyond Nature Methods Marx V. Epigenetics,Restriction Enzymes for Epigenetics
2016 Genetically anchored fluorescent probes for subcellular specific imaging of hydrogen sulfide. Analyst Chen, J., Zhao, M., Jiang, X., Sizovs, A., Wang, M.C., Provost, C.R., Huang, J. and Wang, J.
2016 Complete Genome Sequence of a Strain of Azospirillum thiophilum Isolated from a Sulfide Spring. Genome Announc. Fomenkov, A., Vincze, T., Grabovich, M., Anton, B.P., Dubinina, G., Orlova, M., Belousova, E. and Roberts, R.J.
2016 Characterization of innate immunity genes in the parasitic nematode Brugia malayi Symbiosis Libro, S., Slatko, B.E. and Foster, J.M.
2016 AnnoTALE: bioinformatics tools for identification, annotation, and nomenclature of TALEs from Xanthomonas genomic sequences. Sci Rep. Grau, J., Reschke, M., Erkes, A., Streubel, J., Morgan, R.D., Wilson, G.G., Koebnik, R. and Boch, J.
2016 Complete Genome Sequence and Methylome Analysis of Aeromonas hydrophila Strain YL17, Isolated from a Compost Pile. Genome Announc. Lim, Y.L., Roberts, R.J., Ee, R., Yin, W.F. and Chan, K.G.
2016 Complete Genome and Methylome Sequences of Salmonella enterica subsp. enterica Serovar Panama (ATCC 7378) and Salmonella enterica subsp. enterica Serovar Sloterdijk (ATCC 15791). Genome Announc. Yao, K., Muruvanda, T., Roberts, R.J., Payne, J., Allard, M.W. and Hoffmann, M.
2016 Host-Associated Genomic Features of the Novel Uncultured Intracellular Pathogen Ca. Ichthyocystis Revealed by Direct Sequencing of Epitheliocysts. Genome Biol. Evol. Qi, W. et al.
2016 The Microbiome of Aseptically Collected Human Breast Tissue in Benign and Malignant Disease Sci Rep. Hieken, T.J. et al.
2016 Epidemiological typing of Neisseria gonorrhoeae and detection of markers associated with antimicrobial resistance directly from urine samples using next generation sequencing Sex. Transm. Infect Graham, R.M.A. et al.
2016 omplete Genome Sequence and Methylome Analysis of Bacillus globigii ATCC 49760. Genome Announc. Morgan, R.D.
2016 Metagenomic analysis of bloodstream infections in patients with acute leukemia and therapy induced neutropenia. Sci Rep. Gyarmati, P. et al.
2016 Genomic study of the Ket: a PaleoEskimo-related ethnic group with significant ancient North Eurasian ancestry. Sci Rep. Flegontov, P. et al.
2016 Biosynthesis and Function of Modified Bases in Bacteria and Their Viruses. Chemical Reviews Weigele, P.W. and Raleigh, E. A.
2016 Identification of Ecdysone Hormone Receptor Agonists as a Therapeutic Approach for Treating Filarial Infections. PLoS Negl Trop Dis. Mhashilkar, A.S., Vankayala, S.L., Liu, C., Kearns, F., Mehrotra, P., Tzertzinis, G., Palli, S.R., Woodcock, H.L. and Unnaschm, T.R.
2016 mRNA capping: biological functions and applications. Nucleic Acids Res Ramanathan, A., Robb, G.B. and Chan, S.H.
2016 Detecting DNA Methylation using the Oxford Nanopore Technologies MinION sequencer bioRxiv Simpson, J.T. et al.
2016 Emerging pathogens of gilthead seabream: characterisation and genomic analysis of novel intracellular β-proteobacteria. ISME J. Seth-Smith, M.B.P. et al.
2016 Type II restriction endonucleases - a historical perspective and more. Nucleic Acids Res Pingoud, A., Wilson, G.G. and Wende, W.
2016 Jmjd2/Kdm4 demethylases are required for expression of Il3ra and survival of acute myeloid leukemia cells Genes & Dev Agger, K. et al.
2016 Reminder to deposit DNA sequences Science Blaxter, M., Danchin, A., Savakis, B., Fukami-Kobayashi, K., Kurokawa, K., Sugano, S., Roberts, R.J., Salzberg, S.L. and Wu, C.I.
2016 Expression and purification of the modification-dependent restriction enzyme BisI and its homologous enzymes Sci Rep Xu, S.Y., Klein, P., Degtyarev, S.K.h. and Roberts, R.J.
2016 Advanced uracil DNA glycosylase-supplemented real-time reverse transcription loop-mediated isothermal amplification (UDG-rRT-LAMP) method for universal and specific detection of Tembusu virus Scientific Reports Tang Y, Chen H, Diao Y
2016 Folate-/FAD-dependent tRNA methyltransferase from Thermus thermophilus regulates other modifications in tRNA at low temperatures. Genes Cells Yamagami, R., Tomikawa, C., Shigi, N., Kazayama, A., Asai, S.I., Takuma, H., Hirata, A., Fourmy, D., Asahara, H., Watanabe, K., Yoshizawa, S. and Hori, H.
2016 Taxonomer: an interactive metagenomics analysis portal for universal pathogen detection and host mRNA expression profiling Genome Biology Flygare, S. et al.
2016 Increasing Genome Sampling and Improving SNP Genotyping for Genotyping-by-Sequencing with New Combinations of Restriction Enzymes G3 Fu YB, Peterson G. W., Dong Y Restriction Enzyme Digestion,Restriction Enzyme Digestion
2016 A DsbA-Deficient Periplasm Enables Functional Display of a Protein with Redox-Sensitive Folding on M13 Phage. Biochemistry Chen, M., Samuelson, J.C.
2016 Comparative Methylome Analysis of the Occasional Ruminant Respiratory Pathogen Bibersteinia trehalosi. PLoS One Anton, B.P., Harhay, G.P., Smith, T.P., Blom, J. and Roberts, R.J.
2016 Comparison of intraspecific, interspecific and intergeneric chloroplast diversity in Cycads. Sci Rep. Jiang, G.F. et al.
2016 Culture-independent genomic characterisation of Candidatus Chlamydia sanzinia, a novel uncultivated bacterium infecting snakes. BMC Genomics Taylor-Brown, A. et al.
2016 Comparison of a new visual isothermal nucleic acid amplification test with PCR and skin snip analysis for diagnosis of onchocerciasis in humans. Mol Biochem Parasitol. Alhassan, Aa, Osei-Atweneboana, M.Y., Kyeremeh, K.F., Poole, C.B., Li, Z., Tettevi, E., Tanner, N.A. and Carlow, C.K.
2016 Derivative Engineered To Be Deficient in All Methylcytosine and Methyladenine Restriction Systems. Genome Announc. Jobling, M.G., Raleigh, E.A. and Frank, D.N.
2016 Use of the Shuffle Strains in Production of Proteins. Curr Protoc Protein Sci. Ren, G., Ke, N. and Berkmen, M.
2016 Single-cell 5hmC sequencing reveals chromosome-wide cell-to-cell variability and enables lineage reconstruction Nature Biotechnology Mooijman D, Dey S S, Boisset JC, Crosetto N, van Oudenaarden A Epigenetics
2016 Simple Isothermal Strategy for Multiplexed, Rapid, Sensitive, and Accurate miRNA Detection ACS Sens Wee E J H, Trau M,
2016 WGS for surveillance of antimicrobial resistance: a pilot study to detect the prevalence and mechanism of resistance to azithromycin in a UK population of non-typhoidal Salmonella. J Antimicrob Chemother. Nair, S. et al.
2016 High-efficiency generation of induced pluripotent mesenchymal stem cells from human dermal fibroblasts using recombinant proteins. Stem Cell Res Ther. Chen, F., Zhang, G., Yu, L., Feng, Y., Li, X., Zhang, Z., Wang, Y., Sun, D. and Pradhan, S.
2016 Heme acquisition in the parasitic filarial nematode Brugia malayi. FASEB J. Luck AN, Yuan X, Voronin D, Slatko BE, Hamza I, Foster JM.
2016 Erratum to: SHuffle, a novel Escherichia coli protein expression strain capable of correctly folding disulfide bonded proteins in its cytoplasm. Microb Cell Fact. Lobstein, J., Emrich, C.A., Jeans, C., Faulkner, M., Riggs, P. and Berkmen, M.
2016 Illuminating uveitis: metagenomic deep sequencing identifies common and rare pathogens. Genome Medicine Doan, T. et al.
2016 Rapid, Low-Cost Detection of Zika Virus Using Programmable Biomolecular Components Cell Pardee P, Green A A, Takahashi M K, Braff D, Lambert G, Lee J W, Ferrante T, Ma D, Donghia N, Fan M, Daringer N M, Bosch I, Dudley D M, O’Connor D H, Gehrke H, Collins J J
2016 Quantitative profiling of glycans and glycopeptides: an informatics' perspective Curr Opin Struct Biol. Walsh, I., Zhao, S., Campbell, M., Taron, C.H. and Rudd, P.M.
2016 Perpetuating the homing endonuclease life cycle: identification of mutations that modulate and change I-TevI cleavage preference. Nucleic Acids Res. Roy, A.C., Wilson, G.G. and Edgell, D.R.
2016 Phytochromes function as thermosensors in Arabidopsis. Science Jung, J-H. et al.
2016 Profiling of core fucosylated N-glycans using a novel bacterial lectin that specifically recognizes α1,6 fucosylated chitobiose. Sci Rep. Vainauskas, S., Duke, R.M., McFarland, J., McClung, C., Ruse, C. and Taron, C.H.
2016 Novel Methyltransferase Recognition Motif Identified in Chania multitudinisentens RB-25(T) gen. nov., sp. nov. Front Microbiol Ee, R., Lim, Y.L., Yin, W.F., See-Too, W.S., Roberts, R.J. and Chan, K.G.
2016 Reconstitution of Protein Translation of Mycobacterium Reveals Functional Conservation and Divergence with the Gram-Negative Bacterium Escherichia coli. PLoS One. Srivastava, A., Asahara, H., Zhang, M., Zhang, W., Liu, H., Cui, S., Jin, Q. and Chong, S.
2016 Redox pathway sensing bile salts activates virulence gene expression in Vibrio cholerae. Mol Microbiol. Xue, Y., Tue, F., Shi, M., Wu, C.Q., Ren, G., Wang, X., Fang, W., Song, H. and Yang, M.
2016 Novel m4C modification in type I restriction-modification systems. Nucleic Acids Res. Morgan, R.D., Luyten, Y.A., Johnson, S.A., Clough, E.M., Clark, T.A. and Roberts, R.J.
2016 Complete genome and methylome sequences of two Salmonella Genome Announcements Yao, K., Muruvanda, T., Roberts, R.J., Payne, J., Allard, M.W., Hoffmann, M.
2016 Denys-Drash syndrome associated WT1 glutamine 369 mutants have altered sequence-preferences and altered responses to epigenetic modifications. Nucleic Acids Res. Hashimoto, H., Zhang, X., Zheng, Y., Wilson, G.G. and Cheng, X.
2016 Metabolic Incorporation of Azide Functionality into Cellular RNA. Chembiochem Nainar, S., Beasley, S., Fazio, M., Kubota, M., Dai, N., Correa, I.R. Jr. and Spitale, R.C.
2016 Heme acquisition in the parasitic filarial nematode Brugia malayi. FASEB J. Luck, A.N., Yuan, X., Voronin, D., Slatko, B.E., Hamza, I. and Foster, J.M.
2016 Association of 5-hydroxymethylation and 5-methylation of DNA cytosine with tissue-specific gene expression Epigenetics. Ponnaluri, V.K., Ehrlich, K.C., Zhang, G., Lacey, M., Johnston, D., Pradhan, S. and Ehrlich, M.
2016 Binding of 14-3-3 reader proteins to phosphorylated DNMT1 facilitates aberrant DNA methylation and gene expression. Nucleic Acids Res. Esteve, P.O., Zhang, G., Ponnaluri, V.K., Deepti, K., Chin, H.G., Dai, N., Saqum, C., Black, K., Correa, I.R. Jr., Bedford, M.T., Cheng, X. and Pradhan, S.
2016 A Genetic Map for the Only Self-Fertilizing Vertebrate. G3 (Bethesda) Kanamori A, Sugita Y, Yuasa Y, Suzuki T, Kawamura K, Uno Y, Kamimura K, Matsuda Y, Wilson CA, Amores A, Postlethwait JH, Suga K, Sakakura Y.
2016 Characterizing Two Inter-specific Bin Maps for the Exploration of the QTLs/Genes that Confer Three Soybean Evolutionary Traits. Front Plant Sci. Wang W, Liu M, Wang Y, Li X, Cheng S, Shu L, Yu Z, Kong J, Zhao T, Gai J.
2016 RAD mapping reveals an evolving polymorphic and fuzzy boundary of a plant pseudoautosomal region Mol Ecol. Qiu S, Bergero R, Guirao-Rico S, Campos JL, Cezard T, Gharbi K, Charlesworth D.
2016 Adaptive genetic variation distinguishes Chilean blue mussels (Mytilus chilensis) from different marine environments. Ecol Evol. Araneda C, Larraín MA, Hecht B, Narum S.
2016 RAD-seq data point to a northern origin of the arctic-alpine genus Cassiope (Ericaceae). Mol Phylogenet Evol. Hou Y, Nowak MD, Mirré V, Bjorå CS, Brochmann C, Popp M.
2016 RAD-seq derived genome-wide nuclear markers resolve the phylogeny of tunas. Mol Phylogenet Evol. Díaz-Arce N, Arrizabalaga H, Murua H, Irigoien X, Rodríguez-Ezpeleta N.
2016 Mapping the sex determination locus in the hāpuku (Polyprion oxygeneios) using ddRAD sequencing. BMC Genomics. Brown JK, Taggart JB, Bekaert M, Wehner S, Palaiokostas C, Setiawan AN, Symonds JE, Penman DJ.
2016 Plasmid-based one-pot saturation mutagenesis Nature Methods Wrenbeck E.E., Klesmith J.R., Stapleton J.A., Adeniran A., Tyo K.E., & Whitehead T.A
2016 Simple and Highly Sensitive Molecular Diagnosis of Zika Virus by Lateral Flow Assays. Anal Chem. Lee D, Shin Y, Chung S, Hwang KS, Yoon DS, Lee JH
2016 RAD mapping reveals an evolving, polymorphic and fuzzy boundary of a plant pseudoautosomal region. Mol Ecol. Qiu S, Bergero R, Guirao-Rico S, Campos JL, Cezard T, Gharbi K, Charlesworth D.
2016 Training the Next Generation of Biomedical Investigators in Glycosciences. J. Clin. Invest. Agre, P., Bertozzi, C., Bissell, M., Campbell, K., Cummings, R., Desai, U., Estes, M., Flotte, T., Fogleman, G.,Gage, F., Ginsburg, D., Gordon, J.I., Hart, G., Hascall, V., Kiessling, L., Kornfeld, S., Lowe, J., Magnani, J., Mahal, L.K., Medzhitov, R., Roberts, R., Sackstein, R., Sarkar, R., Schnaar, R., Schwartz, N., Varki, A., Walt, D., Weissman, I.
2016 Transcription factor LSF-DNMT1 complex dissociation by FQI1 leads to aberrant DNA methylation and gene expression. Oncotarget Chin, H.G., Ponnaluri, C., Zhang, G., Esteve, P., Schaus, S.E., Hansen, U. and Pradhan, S.
2016 Incipient sympatric speciation in Midas cichlid fish from the youngest and one of the smallest crater lakes in Nicaragua due to differential use of the benthic and limnetic habitats? Ecol Evol. Kautt AF, Machado-Schiaffino G, Torres-Dowdall J, Meyer A.
2016 Construction of High-Density Linkage Maps of Populus deltoides × P. simonii Using Restriction-Site Associated DNA Sequencing. PLoS One. Tong C, Li H, Wang Y, Li X, Ou J, Wang D, Xu H, Ma C, Lang X, Liu G, Zhang B, Shi J.
2016 De novo SNP discovery and genetic linkage mapping in poplar using restriction site associated DNA and whole-genome sequencing technologies. BMC Genomics Mousavi M, Tong C, Liu F, Tao S, Wu J, Li H, Shi J.
2016 Development of a RAD-Seq Based DNA Polymorphism Identification Software, AgroMarker Finder, and Its Application in Rice Marker-Assisted Breeding. PLoS One. Fan W, Zong J, Luo Z, Chen M, Zhao X, Zhang D, Qi Y, Yuan Z.
2016 COMBREX-DB: An experiment centered database of protein function: knowledge, predictions and knowledge gaps. Nucl. Acids Res. Chang, Y.-C., Hu, Z., Rachlin, J., Anton, B.P., Kasif, S., Roberts, R.J. and Steffen, M.
2016 Complete genome sequence of Brevibacterium linens SMQ-1335. Genome Announcements De Melo, A., Labrie, S., Dumaresq, J., Roberts, R., Tremblay, D. and Moineau, S.
2016 Genetic Divergence between Camellia sinensis and Its Wild Relatives Revealed via Genome-Wide SNPs from RAD Sequencing. PLoS One. Yang H, Wei CL, Liu HW, Wu JL, Li ZG, Zhang L, Jian JB, Li YY, Tai YL, Zhang J, Zhang ZZ, Jiang CJ, Xia T, Wan XC.
2016 Complete Genome Sequence of NEB 5-alpha, a Derivative of Escherichia coli K-12 DH5 alpha. Genome Announc. Anton, B.P. and Raleigh, E.A.
2016 Global repositioning of transcription start sites in a plant-fermenting bacterium. Nat Commun Boutard, M., Ettwiller, L., Cerisy, T., Alberti, A., Labadie, K., Salanoubat, M., Schildkraut, I. and Tolonen, A.C.
2016 Development of a universal and simplified ddRAD library preparation approach for SNP discovery and genotyping in angiosperm plants. Plant Methods. Yang GQ, Chen YM, Wang JP, Guo C, Zhao L, Wang XY, Guo Y, Li L, Li DZ, Guo ZH.
2016 Hydroxymethyluracil modifications enhance the flexibility and hydrophilicity of double-stranded DNA. Nucleic acids research Carson, S., Wilson, J., Aksimentiev, A., Weigele, P. R., & Wanunu, M.
2016 DNA recognition by the SwaI restriction endonuclease involves unusual distortion of an 8 base pair A: T-rich target. Nucleic Acids Res. Shen, B.W., Heiter, D.F., Lunnen, K.D., Wilson, G.G. and Stoddard, B.L.
2016 Efficient In Situ Detection of mRNAs using the Chlorella virus DNA ligase for Padlock Probe Ligation RNA Schneider, N., Meier, M.
2016 Distributive processing by the Iron(II)/α-Ketogluterate-dependent catalytic domains of the TET enzymes in consistent with epigenetic roles for oxidized 5-methylcytosine bases J Am Chem Soc. Tamanaha, E., Guan, S., Marks, K., Saleh, L.
2016 High-temperature single-molecule kinetic analysis of thermophilic archaeal MCM helicases Nucleic Acids Res. Schermerhorn, K.M., Tanner, N., Kelman, Z. and Gardner, A.F.
2016 Evaluation of a glycoengineered monoclonal antibody via LC-MS analysis in combination with multiple enzymatic digestion MAbs Liu, R., Giddens, J., McClung, C.M., Magnelli, P.E., Wang, L.X., Guthrie, E.P.
2016 Adapting capillary gel electrophoresis as a sensitive, high-throughput method to accelerate characterization of nucleic acid metabolic enzymes Nucleic Acids Res. Greenough, L., Schermerhorn, K.M., Mazzola, L., Bybee, J., Rivizzigno, D., Cantin, E., Slatko, B.E., Gardner, A.F.
2016 Complete Genome Sequence of Escherichia coli ER1821R, a Laboratory K-12 Derivative Engineered To Be Deficient in All Methylcytosine and Methyladenine Restriction Systems Genome Announc. Jobling, M.G., Raleigh, E.A. and Frank, D.N.
2016 Comprehensive nucelosome mapping of the human genome in cancer progression Oncotarget Druliner, B.R., Vera, D., Johnson, R., Ruan, X., Apone, L.M., Dimalanta, E.T., Stewart, F.J., Boardman, L., Dennis, J.H.
2016 One-pot system for synthesis, assembly, and display of functional single-span membrane proteins on oil-water interfaces Proc. Natl Acad Sci USA Yunker, P.J., Asahara, H., Hung, K.C., Landry, C., Arriaga, L.R., Akartuna, I., Heyman, J., Chong, S., Weitz, D.A.
2016 Structural basis for human PRDM9 action at recombination hot spots Genes Dev Patel, A., Horton, J.R., Wilson, G.G., Zhang, X. and Cheng, X.
2016 The endoplasmic reticulum: structure, function and response to cellular signaling Cell Mol Life Sci. Schwarz, D.S., Blower, M.D.
2016 Phenotypic and molecular analysis of the effect of 20 hydroxyecdysone on the human filarial parasite Brugia malayi Int J Parasitol Mhashilkar, A.S., Adapa, S.R., Jiang, R.H., Williams, S.A., Zaky, W., Slatko, B.E., Luck, A.N., Moorhead, A.R. and Unnasch, T.R.
2016 Perpetuating the homing endonuclease life cycle: identification of mutations that modulate and change I-TevI cleavage preference Nucleic Acids Res. Roy, A.C., Wilson, G.G. and Edgell, D.R.
2016 Sequential formation of two branched intermediates during protein splicing of class three inteins Extremophiles Tori, K. and Perler, F.
2016 A microbiome DNA enrichment method for next-generation sequencing sample preparation Curr Prot Mol Biol. Yigit, E., Feehery, G.R., Langhorst, B.W., Stewart, F.J., Dimalanta, E.T., Pradhan, S., Slako, B., Gardner, A.F., McFarland, J., Sumner, C., Davis, T.B.
2016 A high-throughput assay for the comprehensive profiling of DNA ligase fidelity Nucleic Acids Res. Lohman, G.J., Bauer, R.J., Nichols, N.M., Mazzola, L., Bybee, J., Rivizzigno, D., Cantin, E., Evans, T.C., Jr.
2016 Selective depletion of abundant RNAs to enable transcriptome analysis of low-input and highly degraded human RNA. Curr. Protoc. Mol. Biol. Munafó, D.B., Langhorst, B.W., Chater, C.L., Sumner, C.J., Rodriguez, D.N., Russello, S., Gardner, A.F., Slatko, B.E., Stewart, F.J., Sinicropi, D., Morlan, J., Qu, K., Dimalanta, E.T., Davis, T.B.
2016 Characterization of a Zika Virus Isolate from Colombia. PLOS Anismrita Lahon, Ravi P. Arya, Alexander R. Kneubehl, Megan B. Vogt, Natalie J. M. Dailey Garnes, and Rebecca Rico-Hesse,*
2016 Heme acquisition in the parasitic filarial nematode Brugia malayi FASEB Luck A, Yuan X2, Voronin D, Slatko B, Hamza I, Foster JM4.
2016 De novo DNA methylation drives 5hmC accumulation in mouse zygotes Nat Cell Biol Amouroux R
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2015 A Proline-Rich Domain in the Genotype 4 Hepatitis E Virus ORF3 PLoS One Wang H., Fangxiao J., Liang H., Gu H.
2015 A New Approach to Produce HIV-1 Envelope Trimers: BOTH CLEAVAGE AND PROPER GLYCOSYLATION ARE ESSENTIAL TO GENERATE AUTHENTIC TRIMERS. J Biol Chem AlSalmi W., Mahalingam M., Ananthaswamy N., Hamlin C., Flores D., Gao G., Rao V.B.
2015 A high-throughput assay for the comprehensive profiling of DNA ligase fidelity Nucleic Acids Res Lohman GJ, Bauer RJ, Nichols NM, Mazzola L, Bybee J, Rivizzigno D, Cantin E, Evans TC Jr.
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2015 A metagenomics and case-control study to identify viruses associated with bovine respiratory disease. J Virol Terry Fei Fan Ng, Nikola O Kondov, Xutao Deng, Alison Van Eenennaam, Holly L Neibergs, Eric Delwart RT-qPCR, RT-PCR and cDNA Synthesis
2015 A lipid switch unlocks Parkinson's disease-associated ATP13A2 Proc Natl Acad Sci U S A Holemans T., Sørensen DM., Veen S., Martin S., Hermans D., Kemmer GC., Haute C., Baekelandt V., Pomorski TG., Agostinis P., Wuytack F., Palmgren M., Eggermont J., Vangheluwe P.
2015 Activation and enhancement of Fredericamycin A production in deepsea-derived Streptomyces somaliensis SCSIO ZH66 by using ribosome engineering and response surface methodology. Microb Cell Fact Yonghe Zhang, Huiming Huang, Shanshan Xu, Bo Wang, Jianhua Ju, Huarong Tan, Wenli Li High-Fidelity PCR
2015 Production of bioactive chicken (Gallus gallus) follistatin-type proteins in E. coli Sci Rep Lee S.B., Park S.K., Kim Y.S.
2015 A Structural and Functional Comparison Between Infectious and Non-Infectious Autocatalytic Recombinant PrP Conformers Sci Rep Noble GP., Wang DW., Walsh DJ., Barone JR., Miller MB., Nishina KA., Li S., Supattapone S.
2015 Proteomic Analysis Reveals Aberrant O-GlcNAcylation of Extracellular Proteins from Breast Cancer Cell Secretion Mol Biol Cell Netsirisawan P., Chokchaichamnankit D., Srisomsap C., Svasti J., Champattanachai V.
2015 Pre-Steady-State Kinetic Analysis of a Family D DNA Polymerase from Thermococcus sp. 9°N Reveals Mechanisms for Archaeal Genomic Replication and Maintenance J Biol Chem Schermerhorn KM, Gardner AF
2015 Rapid detection of equine coronavirus by reverse transcription loop-mediated isothermal amplification. J Virol Methods Manabu Nemoto, Yoshinori Morita, Hidekazu Niwa, Hiroshi Bannai, Koji Tsujimura, Takashi Yamanaka, Takashi Kondo Isothermal Amplification
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2015 Production of a Highly Protease-Resistant Fungal α-Galactosidase in Transgenic Maize Seeds for Simplified Feed Processing Sci Rep Yang W., Zhang Y., Zhou X., Zhang W., Xu X., Chen R., Meng Q., Yuan J., Yang P., Yao B.
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2015 Selective expression of sense and antisense transcripts of the sushi-ichi-related retrotransposon - derived family during mouse placentogenesis. Retrovirology Christine Henke, Pamela L Strissel, Maria-Theresa Schubert, Megan Mitchell, Claus C Stolt, Florian Faschingbauer, Matthias W Beckmann, Reiner Strick High-Fidelity PCR
2015 Rapid Preparation of Released N-Glycans for HILIC Analysis Using a Labeling Reagent that Facilitates Sensitive Fluorescence and ESI-MS Detection Anal Chem Lauber, M.A., Yu, Y.Q., Brousmiche,D.W., Hua, Z., Koza, S.M., Magnelli, P., Guthrie, E., Taron, C.H. and Fountain, K.J.
2015 Rational design of 'controller cells' to manipulate protein and phenotype expression. Metab Eng Amin Zargar, David N Quan, Milad Emamian, Chen Yu Tsao, Hsuan-Chen Wu, Chelsea R Virgile, William E Bentley High-Fidelity PCR
2015 Real-Time Sequence-Validated Loop-Mediated Isothermal Amplification Assays for Detection of Middle East Respiratory Syndrome Coronavirus (MERS-CoV). PLoS One Sanchita Bhadra, Yu Sherry Jiang, Mia R Kumar, Reed F Johnson, Lisa E Hensley, Andrew D Ellington Isothermal Amplification
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2015 microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach. Parasites & Vectors Macchiaroli, N. et al.
2015 Multi-Dimensional Measurement of Antibody-Mediated Heterosubtypic Immunity to Influenza. Sci Rep Wang J., Hilchey SP., Hyrien O., Huertas N., Perry S., Ramanunninair M., Bucher D., Zand MS.
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2015 Label-free single-cell protein quantification using a drop-based mix-and-read system. Sci. Rep. Abbaspourrad A, Zhang H, Tao Y, Cui N, Asahara H, Zhou Y, Yue D, Koehler SA, Ung LW, Heyman J, Ren Y, Ziblat R, Chong S, Weitz DA.
2015 Mammalian DNA (cytosine-5) methyltransferase mechanisms and RNA-mediated inhibition for future therapies. Epigenetics Diagnostic Therapy Zhang, G., Esteve, P.O., Chin, H.G. and Pradhan, S
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2015 Multivalent site-specific phage modification enhances the binding affinity of receptor ligands Bioconjug Chem Beech, J., Saleh, L., Frentzel, J., Figler, H., Correa, I.R. Jr., Baker, B., Ramspacher, C., Marshall, M., Dasa, S., Linden, J., Noren, C.J. and Kelly, K.A.
2015 Overview of Target Enrichment Strategies. current Protocols in Molecular Biology Kozarewa, I., Armisen, J., Gardner, A.F., Slatko, B.E. and Hendrickson, C.L.
2015 Phylogeny and differentiation of reptilian and amphibian ranaviruses detected in europe PLoS One Stöhr AC, López-Bueno A, Blahak S, Caeiro MF, Rosa GM, Alves de Matos AP, Martel A, Alejo A, Marschang RE
2015 Physiologic Stresses Reveal a Salmonella Persister State and TA Family Toxins Modulate Tolerance to These Stresses PLoS One Silva-Herzog E, McDonald EM, Crooks AL, Detweiler CS.
2015 Na, K-ATPase α3 is a death target of Alzheimer patient amyloid-β assembly. Proc Natl Acad Sci U S A Ohnishi T., Yanazawa M., Sasahara T., Kitamura Y., Hiroaki H., Fukazawa Y., Kii I., Nishiyama T., Kakita A., Takeda H., Takeuchi A., Arai Y., Ito A., Komura H., Hirao H., Satomura K., Inoue M., Muramatsu S., Matsui K., Tada M., Sato M., Saijo E., Shigemitsu Y., Sakai S., Umetsu Y., Goda N., Takino N., Takahashi H., Hagiwara M., Sawasaki T., Iwasaki G., Nakamura Y., Nabeshima Y., Teplow D.B., Hoshi M.
2015 Novel recA-Independent Horizontal Gene Transfer in Escherichia coli K-12 PloS One Kingston, A. W., Roussel-Rossin, C., Dupont, C., Raleigh, E. A.
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2015 Serum N-Glycans: A New Diagnostic Biomarker for Light Chain Multiple Myeloma Sci Rep Chen J., Fang M., Zhao YP., Yi CH., Ji J., Cheng C., Wang MM., Gu X., Sun QS., Chen XL., Gao CF.
2015 Tissue-specific epigenetics in gene neighborhoods: myogenic transcription factor genes Hum Mol Genet Chandra, S., Terragni, J., Zhang, G., Pradhan, S., Haushka, S., Johnston, D., Baribault, C., Lacey, M. and Ehrlich, M.
2015 Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont BMC Genomics Luck, A.N., Anderson, K.G., McClung, C.M., VerBerkmoes, N.C., Foster, J.M., Michalski, M.L. and Slatko, B.E. Library Preparation for Next Generation Sequencing
2015 TonEBP modulates the protective effect of taurine in ischemia-induced cytotoxicity in cardiomyocytes Cell Death Dis. Yang YJ, Han YY, Chen K, Zhang Y, Liu X, Li S, Wang KQ, Ge JB, Liu W, Zuo J.
2015 The foles of family B and d DNA polymerases in thermococcus species 9 degrees n okazaki fragment maturation J Biol Chem Greenough, L., Kelman, Z. and Gardner, A.F.
2015 The ribosome quality control pathway can access nascent polypeptides stalled at the Sec61 translocon Mol Biol Cell Malsburg K., Shao S., Hegde RS.
2015 The RpoE Stress Response Pathway Mediates Reduction of the Virulence of Enteropathogenic Escherichia coli by Zinc. Appl Environ Microbiol Yuan Xue, Jossef Osborn, Anand Panchal, Jay L Mellies High-Fidelity PCR
2015 Transcriptional Analysis of Deinococcus radiodurans Reveals Novel Small RNAs That Are Differentially Expressed under Ionizing Radiation. Appl. Environ. Microbiol. Tsai, H.C. et al
2015 Bias in ligation-based small RNA sequencing library construction is determined by adaptor and RNA structure PLoS One Fuchs, R.T., Sun, Z., Zhuang, F., et al. RNA Analysis
2015 Converting a Sulfenic Acid Reductase into a Disulfide Bond Isomerase Antioxid Redox Signal Chatelle C, Kraemer S, Ren G, Chmura H, Marechal N, Boyd D, Roggemans C, Ke N, Riggs P, Bardwell J, Berkmen M
2015 CRISPR/Cas9 nuclease cleavage combined with Gibson assembly for seamless cloning Biotechniques Wang JW, Wang A, Li K, Wang B, Jin S, Reiser M, Lockey RF
2015 Upregulation of glycans containing 3' fucose in a subset of pancreatic cancers uncovered using fusion-tagged lectins. J Proteome Res Singh S., Kuntal P., Yadav J., Tang H., Partyka K., Kletter D., Hsueh P., Ensink E., Kc B., Hostetter G., Xu E.H., Bern M., Smith D.F., Mehta A.S., Brand R., Melcher K., Haab B.B.
2015 VirB6 and VirB10 from the Brucella type IV secretion system interact via the N-terminal periplasmic domain of VirB6 FEBS Lett Giraldo A.MV., Mary C., Sivanesan D., Baron C.
2015 Visual detection of isothermal nucleic acid amplification using pH-sensitive dyes Biotechniques Tanner, N.A., Zhang, Y. and Evans, T.C., Jr.
2015 The diversity of Bet v 1-specific IgG4 antibodies remains mostly constant during the course of birch pollen immunotherapy J Allergy Clin Immunol Subbarayal B., Schiller D., Möbs C., Pfützner W., Jahn-Schmid B., Gepp B., Breiteneder H., Vieths S., Bohle B.
2015 Structural and biochemical studies of a moderately thermophilic exonuclease I from Methylocaldum szegediense PLoS One Fei, L., Tian, S., Moysey, R., Misca, M., Barker, J.J., Smith, M.A., McEwan, P.A., Pilka, E.S., Crawley, L., Evans, T. and Sun, D.
2015 Stem cells. Asymmetric apportioning of aged mitochondria between daughter cells is required for stemness Science P, Katajisto., Dohla, J., Chaffer, CL., Pentinmikko, N., Marjanovic, N., Igbal, S., Zoncu, R., Chen, W., Weinberg, RA., Sabatini, DM. SNAP Cell
2015 Structural basis of asymmetric DNA methylation and ATP-triggered long-range diffusion by EcoP15I Nature Communications Gupta, Y.K., Chan, S.H., Xu, S.Y., and Aggarwal, A.K.
2015 Simultaneous generation of many RNA-seq libraries in a single reaction Nat Methods Shishkin AA, Giannoukos G, Kucukural A, Ciulla D, Busby M, Surka C, Chen J, Bhattacharyya RP, Rudy RF, Patel MM, Novod N, Hung DT, Gnirke A, Garber M, Guttman M, Livny J
2015 Small RNA-mediated DNA (cytosine-5) methyltransferase 1 inhibition leads to aberrant DNA methylation Nucleic Acids Res Zhang, G., Esteve, P.O., Chin, H.G., Terragni, J., Dai, N., Correa, I.R. Jr. and Pradhan, S.
2015 Specificity of the ModAll, ModA12 and ModD1 epigenetic regulator N6-adenine DNA methyltransferases of Neisseria Meningitidis Nucleic Acids Res Seib, K.L., Jen, F.E., Tan, A., Scott, A.L., Kumar, R., Power, P.M., Chen, L.T., Wu, H.J., Wang, A.H., Hill, D.M., Luyten, Y.A., Morgan, R.D., Roberts, R.J., Maiden, M.C., Boitano, M., Clark, T.A., Korlach, J., Rao, D.N. and Jennings, M.P.
2015 Ten simple rules to win a nobel prize Roberts, R.J.
2015 Structure of Naegleria Tet-like dioxygenase (NgTet1) in complexes with a reaction intermediate 5-hydroxymethylcytosine DNA. Nucleic Acids Res Hashimoto H, Pais JE, Dai N, Corrêa IR Jr, Zhang X, Zheng Y, Cheng X.
2015 Terminal Mannose Residues in Seminal Plasma Glycoproteins of Infertile Men Compared to Fertile Donors Int J Mol Sci Beata O., Jarząb A., Kratz E., Zimmer M., Gamian A., Ferens-Sieczkowska M.
2015 The complete methylome of Helicobacter pylori UM032 BMC Genomics Lee, W.C., Anton, B.P., Wang, S., Baybayan, P., Singh, S., Ashby, M., Chua, E.G., Tay, C.Y., Thirriot, f., Loke, M.F., Goh, K.L., Marshall, B.J., Robert, R.J. and Vadivelu, J.
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