We believe that basic research and the cultivation of scientific knowledge is critical for us to stay connected with our customers and to drive scientific breakthroughs. At NEB, over 30 labs participate in research projects, which are aided by post-doctoral fellows and students in Masters and Ph.D. programs. NEB researchers have authored or co-authored over 1,000 publications (as of 1/17) many of which are in peer-reviewed journals. Further, NEB products have been used successfully in numerous publications by scientists throughout the world.

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Year Title Journal Authors Application(s)
2001 AdoMet-dependent methylation, DNA methyltransferases and base flipping. Nucl.Acids Res. Cheng, X.and Roberts, R.J.
2001 Characterization of a naturally occurring trans-splicing intein from Synechocystis sp.PCC6803. Biochemistry Martin, D.D., Xu, M-Q and Evans, T.C.Jr.
2001 Cell-free translation reconstituted with purified components Nat. Biotech. Shimizu, Y., Inoue, A., Tomari, Y., Suzuki, T., Yokogawa, T., Nishikawa, K. and Ueda, T.
2001 Protein trans-Splicing To Produce Herbicide-Resistant Acetolactate Synthase. Appl.Environ.Microbiol. Sun, L., Ghosh, I., Paulus, H.and Xu, M.Q.
2001 Protein splicing and its aplications. Genet.Eng.(NY) Giriat, I., Muir, T.W.and Perler, F.B.
2001 Purification of proteins fused to either the amino or carboxy terminus of the Mycobacterium xenopi gyrase A intein. BioTechniques Southworth, M.W., Amaya, K., Evans, T.C., Xu, M-Q and Perler, F.B.
2001 PubMed Central: The GenBank of the Published Literature. Proc.Natl.Acad.Sci. Roberts, R.J.
2001 Protein splicing. Encyclopedia of Genetics Xu, M.Q., Chong, S.and T.C.Evans, Jr.
2001 Intein-mediated rapid purification of cre recombinase Protein Expr.Purif. Cantor, E.J.and Chong, S.
2001 Intein-Mediated Ligation and Cyclization of Expressed Proteins. Methods Xu, M.Q.and T.C.Evans, Jr.
2001 Nuclear receptors in nematodes: themes and variations. Trends in Genetics Sluder, A.E.and Maina, C.V.
2001 Molecular Biology Problem Solver: A Laboratory Guide Bonventre, J., Walsh, P.and Robinson, D.
2001 The sequence of the human genome Science Venter, J.C., Roberts, al.
2001 The nicking endonuclease N.BstNBI is closely related to Type IIs restriction endonucleases MlyI and PleI. Nucl.Acids Res. Higgins, L.S., Besnier, C.and Kong H.
2001 Zinc Inhibition of Protein trans-Splicing and Identification of Regions Essential for Splicing and Association of a Split Intein. J.Biol.Chem. Ghosh, I., Sun, L.and Xu, M.Q.
2001 The VP1-unique region of parvovirus B19: amino acid variability and antigenic stability J. Gen. Virol. Dorsch, S., et al.
2001 The Energetics of the Interaction of BamHI Endonuclease with its Recognition Site GGATCC. J.Mol.Biol. Engler, L.E., Sapienza, P., Dorner, L.F., Kucera, R., Schildkraut, I.and Jen-Jacobson, L.
2001 REBASE-restriction enzymes and methylases. Nucl.Acids Res. Roberts, R.J., and Macelis, D.
2001 Qualitative detection of apoptotic cells assessed by DNA fragmentation. Methods Mol.Biol. McIlwrath, A.J.
2001 Restriction enzyme BsoBI-DNA complex: a tunnel for recognition of degenerate DNA sequences and potential histidine catalysis. Structure van der Woerd, M.J., Pelletier, J.J., Xu, S.and Friedman, A.M.
2001 Recombinant human DNA (cytosine-5) methyltransferase.III.Allosteric control, reaction order, and influence of plasmid topology and triplet repeat length on methylation of the fragile X CGGCCG sequence. J.Biol.Chem. Bacolla, A., Pradhan, S., Larson, J.E., Roberts, R.J.and Wells, R.D.
2001 Construction of high-complexity combinatorial phage display peptide libraries. Methods Noren, K.A.and Noren, C.J.
2001 Crystal structure of a phosphorylated Smad2. Recognition of phosphoserine by the MH2 domain and insights on Smad function in TGF-beta signaling Mol Cell. Wu, J.W., et al.
2001 Construction of a mini-intein fusion system to allow both direct monitoring of soluble protein expression and rapid purification of target proteins. Gene Zhang, A., Gonzales, S.M., Cantor, E.J.and Chong, S.
2001 Converting MlyI endonuclease into a nicking enzyme by changing its oligomerization state. EMBO Reports Besnier, C.E.and Kong, H.
2001 Comparative genomics of the restriction-modification systems in Helicobacter pylori. Proc.Natl.Acad.Sci.USA Lin, L.F., Posfai, J., Roberts, R.J.and Kong, H.
2001 Characterization of glycosylated variants of beta-lactoglobulin expressed in Pichia pastoris Protein Eng. Kalidas, C., Joshi, L., Batt, C.
2001 Hyperthermophilic Inteins. Methods Enzymol. Perler, F.B.
2001 Information access.Building a "GenBank" of the published literature. Science Roberts, R.J., Varmus, H.D., Ashburner, M., Brown, P.O., Eisen, M.B., Khosla, C., Kirschner, M., Nusse, R., Scott, M.and Wold, B.
2001 Hybridization of High-Denisty Filter Arrays of a Brugia malayi BAC Library with Biotinylated Oligonucleotides and PCR Products. BioTechniques Foster, J.M., Kamal, I.H., Daub, J., Swan, M.C., Ingram, J.R., Ganatra, M., Ware, J., Guiliano, D., Aboobaker, A., Moran, L., Blaxter, M.and Slatko, B.E.
2001 Herbicide resistance from a divided EPSPS protein: the split Synechocystis DnaE intein as an in vivo affinity domain. Gene Chen, L., Pradhan, S.and Evans, T.C.Jr.
2001 In vitro assembly of phytochrome B apoprotein with synthetic analogs of the phytochrome chromophore Proc. Natl. Acad. Sci. USA Hanzawa, H., et al.
2001 Determination of Wolbachia Genome Size by Pulsed-Field Gel Electrophoresis. J.Bacteriol. Sun, L.V., Foster, J.M., Tzertzinis, G., Ono, M., Bandi, C., Slatko, B.E.and O'Neill, S.L.
2001 Detection of Serum IgG Antibodies Specific for Wolbachia Surface Protein in Rhesus Monkeys Infected with Brugia malayi. J Infectious Diseases Punkosdy, G.A., Dennis, V.A., Lasater, B.L., Tzertzinis, G.foster, J.M.and Lammie, P.J.
2001 Engineering a Nicking Endonuclease N.AlwI by Domain Swapping Proc.Natl.Acad.Sci.USA Xu, Y., Lunnen, K.and Kong, H.
2001 Discovery and distribution of super-integrons among pseudomonads. Mol.Microbiol. Vaisvila, R., Morgan, R.D., Posfai, J.and Raleigh, E.A.
2001 Restriction endonucleases. In: Molecular biology problem solver Wiley-Liss, Inc. Robinson, D., Walsh, P.R., Bonventre, J.A.
2001 The activity of the murine DNA methyltransferase Dnmt1 is controlled by interaction of the catalytic domain with the N-terminal part of the enzyme leading to an allosteric activation of the enzyme after binding to methylated DNA J. Mol. Biol. Fatemi, M., Hermann, A., Pradhan, S., Jeltsch, A.
2002 Acyclic and dideoxy teminator preferences denote divergent sugar recognition by archaeon and Taq DNA polymerases. Nuc.Acids Res. Gardner, A.F.and Jack, W.E.
2001 Structural study of restriction enzyme MspI/DNA complex by x-ray crystallography Biophys. J. Xu, Q., O'Loughlin, T.J., Kucera, R.B., Schildkraut, I., Guo, H.-C.
2002 A novel cyclophilin from parasitic and free-living nematodes with a unique substrate-and drug-binding domain. J.Biol.Chem. Ma, D., Nelson, L.S., LeCoz, K., Poole, C.and Carlow, C.K.S.
2002 Alkaline phosphatase from the hyperthermophilic bacterium T. maritima requires cobalt for activity Protein Sci Wojciechowski CL, Cardia JP, and Kantrowitz ER.
2002 Merozoite surface protein-9 of Plasmodium vivax and related simian malaria parasites is orthologous to p101/ABRA of P.falciparum. Mol.Biochem.Parasitol. Vargas-Serrato, E., Barnwell, J.W., Ingravallo, P., Perler, F.B.and Galinski, M.R.
2002 Mechanistic and kinetic considerations of protein splicing. Chem.Rev. Evans, T.C., Jr.and Xu, M-Q
2002 Protein Splicing of the Deinococcus radiodurans Strain R1 Snf2 Intein. J.Bacteriol. Southworth, M.W.and Perler, F.B.
2002 Modulation of postendocytic sorting of G protein-coupled receptors Science Whistler, J.L., Enquist, J., Marley, A., Fong, J., Gladher, F., Tsuruda, P., Murray, S.R., Von Zastrow, M.
2002 InBase, the Intein Database. Nuc.Acids Res. Perler, F.B.
2002 Multiple pathways of Spx (YjbD) proteolysis in Bacillus subtilis J. Bacteriol Nakano, S., et al.
2002 Helminth genomics: from gene discovery to genome sequencing. Trends Parasitol Foster, J.M.and Johnston, D.A.
2002 Inhibition of poly(ADP-ribosyl)ation induces DNA hypermethylation: a possible molecular mechanism. FASEB J. Zardo, G., Reale, A., Passananti, C., Pradhan, S., Bountempo, S., DeMatteis, G., Adams, R.L.P.and Caiafa, P.
2002 Inteins in microbial genomes: distribution, mechanism and function. Scientific World Journal 2 Southworth, M.W.and Perler, F.B.
2002 Intein-mediated affinity-fusion purification of the Escherichia coliRecA protein Protein Expr. Purif.  Singleton, S. F., et al.
2002 Structure of a tRNA Repair Enzyme and Molecular Biology Workhorse: T4 Polynucleotide Kinase. Structure Galburt, E.A., Pelletier, J., Wilson, G.and Stoddard, B.L.
2002 Sequencing and analysis of a 63 kb bacterial artificial chromosome insert from the Wolbachia endosymbiont of the human filarial parasite Brugia malayi. Int.J.Parasitol. Ware, J., Moran, L., Foster, J., Posfai, J., Vincze, T., Guiliano, D., Blaxter, M., Eisen, J.and Slatko, B.
2002 The mechanism of protein splicing: variations on a theme. Peptides: Proceedings of the Twnety-Seventh European Peptide Symposium Perler, F.B., Chen, L.and Southworth, M.W.
2002 Towards the generation of artificial O6-alkylguanine-DNA alkyltransferases: in vitro selection of antibodies with reactive cysteine residues ChemBioChem Damoiseaux, R. et al
2002 The retinoblastoma gene product interacts with maintenance human DNA (Cytosine-5) methyltransferase and modulates its activity. EMBO J. Pradhan, S.and Kim, G.-D.
2002 Recombinant Gaussia luciferase. Overexpression, purification, and analytical application of a bioluminescent reporter for DNA hybridization Anal Chem. Verhaegen, M. and Christopoulos, T.K.
2002 Purification and initial crystallization studies of a DnaB intein from Synechocystis sp.PCC 6803. Acta Crystallogr.D.Biol.Crystallogr. Chen, X., Xu, M.-Q., Ding, Y., Ferrandon, S.and Rao, Z.
2002 Recombinant Gaussia luciferase. Overexpression, purification and analytical application of a bioluminescent reporter for DNA hybridization Anal Chem Verhaegen, M., Christopoulos, T.K.
2002 Self-generated DNA termini relax the specificity of SgrAI restriction endonuclease. Proc.Natl.Acad.Sci.USA Bitinaite, J.and Schildkraut, I.
2002 Selection for mutants improving expression of an anti-MAP kinase monoclonal antibody by filamentous phage display. J.Immunol.Methods Tuckey, C.D.and Noren, C.J.
2002 Genomic functional annotation using co-evolution profiles of gene clusters. Genome Biol. Zheng, Y., Roberts, R.J.and Kasif, S.
2002 Cloning, Expression and Immunization of the new antigen gene Sj-Ts4 of Schistosoma japonicum. Acta Biochimica et Biophysica Sinica Zhou, D.-M., Yi, X.-Y., Zeng, X.-F., Wang, M., Cai, C., Wang, Q.-L., Zhang, S.-K., McReynolds, L.
2002 Cho, a second endonuclease involved in Escherichia coli nucleotide excision repair Proc. Natl. Acad. Sci. US Moolenaar GF, et al.
2002 Computational Identification of Operons in Microbial Genomes. Genome Res. Zheng, Y., Szustakowski, J.D., Fortnow, L., Roberts, R.J.and Kasif, S.
2002 Creation of an Artificial Bifunctional Intein by Grafting a Homing Endonuclease into a Mini-intein. J.Mol.Biol. Hall, M.F., Noren, C., Perler, F.and Schildkraut, I.
2002 Co-operation and communication between the human maintenance and de novo DNA (cytosine-5) methyltransferases. EMBO J. Kim, G.D., Ni, J., Kelesoglu, N., Roberts, R.J.and Pradhan, S.
2002 Autoregulation of a bacterial sigma factor explored by using segmental isotopic labeling and NMR Proc. Natl. Acad. Sci. USA Camarero, J.A., et al.
2002 Arm-site binding by lambda -integrase: solution structure and functional characterization of its amino-terminal domain Proc. Natl. Acad. Sci. USA Wojciak, J.M., et al.
2002 Endosomal localization and function of sorting Proc. Natl. Acad. Sci. USA Zhong, Q., et al.
2002 Efficient isolation of targeted Caenorhabditis elegans deletion strains using highly thermostable restriction endonucleases and PCR. Nucl.Acids.Res. Wei, A., Yuan, A., Fawcett, G., Butler, A., Davis, T., Xu, S.Y.and Salkoff, L.
2002 Gene therapy: reality or myth for the global bleeding disorders community? Haemophilia Kelley, K., Verma, I.and Pierce, G.F.
2002 Expression of the class 1 outer-membrane protein of Neisseria meningitidis in Escherichia coli and purification using a self-cleavable affinity tag Protein Expr. Purif.  Humphries, H. E., Christodoulides, M. and Heckels, J. E.
2002 Development of a Positive Genetic Selection System for Inhibition of Protein Splicing Using Mycobacterial Inteins in Escherichia coli DNA Gyrase Subunit A. J.Mol.Micro.Biotechnol. Adam, E.and Perler, F.B.
2002 Functional analysis of iceA1, a CATG-recognizing restriction endonuclease gene in Helicobacter pylori. Nucl.Acids Res. Xu, Q., Morgan, R.D., Roberts, R.J., Xu, S.Y., van Doorn, L.J., Donahue, J.P., Miller, G.G.and Blaser, M.J.
2002 Crystallographic study of a naturally occurring trans-splicing intein from Synechocystis sp.PCC 6803. Acta Crystallogr.D.Biol.Crystallogr. Chen, X., Xu, M.-Q., Ding, Y., Ferrandon, S.and Rao, Z.
2002 Directed Evolution of Restriction Endonuclease BstYI to Achieve Increased Substrate Specificity. J.Mol.Biol. Samuelson, J.C.and Xu, S.Y.
2002 DNA Binding and Recognition by the IIs Restriction Endonuclease MboII. J.Biol.Chem. Soundararajan, M., Chang, Z., Morgan, R.D., Heslop, P.and Connolly, B.A.
2002 Dirofilaria immitis encodes Di-nhr-7, a putative orthologue of the Drosophila ecdysone-regulated E78 gene. Mol.Biochem.Parasitol. Crossgrove, K., Laudet, V.and Maina, C.V.
2002 Evolutionary relationship of Alw261, Eco31I and Esp3I, restriction endonucleases that recognise overlapping sequences Mol. Genet. Genomics Bitinaite, J., Mitkaite, G., Dauksaite, V., Jakubauskas, A., Timinskas, A., Vaisvila, R., Lubys, A., Janulaitis, A.
2003 A Dual Role for an Aspartic Acid in Glycosylasparaginase Autoproteolysis. Structure Qian, X., Guan, C.and Guo, H.-C.
2003 A fluorescence resonance energy transfer sensor for the beta-domain of metallothionein Proc. Natl. Acad. Sci. USA Hong, S.H., and Maret, W.
2003 Phosphorylation of eIF4E attenuates its interaction with mRNA 5' cap analogs by electrostatic repulsion: intein-mediated protein ligation strategy to obtain phosphorylated protein RNA Zuberek, J., et al.
2003 NEBcutter: A program to cleave DNA with restriction enzymes. Nucl.Acids Res. Vincze, T., Posfai, J.and Roberts, R.J.
2003 Protein trans-splicing in transgenic plant chloroplast: Reconstruction of herbicide resistance from split genes. Proc.Natl.Acad.Sci.USA Chin, H.G., Kim, G.D., Marin, I., Mersha, F., Evans, T.C.Jr., Chen, L., Xu, M.-Q.and Pradhan, S.
2003 Purification and characterisation of a novel DNA methyltransferase, M.AhdI Nucleic Acids Research Marks, P., McGeehan, J., Wilson, G., Errington, N. and Kneale, G.
2003 PspGI, a type II restriction endonuclease from the extreme thermophile Pyrococcus sp.: structural and functional studies to investigate an evolutionary relationship with several mesophilic restriction enzymes. J.Mol.Biol. Pingoud, V., Conzelmann, C., Kinzebach, S., Sudina, A., Metelev, V., Kubareva, E., Bujnicki, J.M., Lurz, R., Luder, G., Xu, S.Y.and Pingoud, A
2003 Kinetic analysis of the coordinated interaction of SgrAI restriction endonuclease with different DNA targets. J.Biol.Chem. Hingorani, K.and Bitinaite, J.
2003 Isolation of BsoBI restriction endonuclease variants with altered substrate specificity. J.Mol.Biol. Zhu, Z., Zhou, J., Friedman, A.M.and Xu, S.-Y.
2003 Mammalian DNA (cytosine-5) methyltransferases and their expression. Clin.Immunol. Pradhan, S.and Esteve P.-O.
2003 Merging fluorescence resonance energy transfer and expressed protein ligation to analyze protein-protein interactions Anal. Biochem.  Scheibner, K.A., Zhang, Z. and Cole, P.A.
2003 Mechanistic and mutational studies of Escherichia coli molybdopterin synthase clarify the final step of molybdopterin biosynthesis J. Biol. Chem. Wuebbens, M. M. and Rajagopalan, K. V.
2003 Purification and characterization of the beta-trefoil fold protein barley alpha-amylase/subtilisin inhibitor overexpressed in Escherichia coli Protein Expr. Purif. Bonsager, B.C., et al.
2003 Study of protein splicing and intein-mediated peptide bond cleavage under high-cell-density conditions. Biotechnol.Prog. Sharma, S., Zhang, A., Wang, H., Harcum, S.W.and Chong S.
2003 Structure of the large FK506-binding protein FKBP51, an Hsp90-binding protein and a component of steroid receptor complexes Proc. Natl. Acad. Sci. USA Sinars, C.R., et al.
2003 The role of C-terminal tyrosine phosphorylation in the regulation of SHP-1 explored via expressed protein ligation J. Biol. Chem. Zhang, Z., et al.
2003 Zinc Ion Effects on Individual Ssp DnaE Intein Splicing Steps: Regulating Pathway Progression. Biochemistry Nichols, N.M., Benner, J.S., Martin, D.D.and Evans, T.C.Jr.
2003 Visualization of coupled protein folding and binding in bacteria and purification of the heterodimeric complex. Proc.Natl.Acad.Sci.USA Wang, H.and Chong, S.
2003 REBASE Restriction enzymes and methyltransferases. Nucl.Acids Res. Roberts, R.J., Vincze, T., Posfai, J.and Macelis, D.
2003 Purification of recombinant proteins from E.coli by engineered inteins. Methods Mol.Biol. Xu, M.-Q.and Evans, T.C., Jr.
2003 Revised Escherichia coli selenocysteine insertion requirements determined by in vivo screening of combinatorial libraries of SECIS variants. Nucl.Acids Res. Sandman, K.E., Tardiff, D.F., Neely, L.A.and Noren, C.J.
2003 Structure of Rab GDP-dissociation inhibitor in complex with prenylated YPT1 GTPase Science Rak, A., et al.
2003 Semisynthesis and application of carboxyfluorescein-labelled biologically active human interleukin-8 Biol. Chem. David, R., et al.
2003 Intein-mediated Protein Purification Methods and Tools in Biosciences and Medicine Chong, S.and Perler, F.B.
2003 Allosteric Activator Domain of Maintenance Human DNA (Cytosine-5) Methyltransferase and Its Role in Methylation Spreading. Biochemistry Pradhan, S.and Esteve P.-O.
2003 A single surface tryptophan in the chitin-binding domain from Bacillus circulans chitinase A1 plays a pivotal role in binding chitin and can be modified to create an elutable affinity tag. Biochim.Biophys.Acta. Ferrandon, S., Sterzenbach, T., Mersha, F.B.and Xu, M-Q
2003 An aspartate aminotransferase of Wolbachia endobacteria from Onchocerca volvulus is recognized by IgG1 antibodies from residents of endemic areas. Parasitol.Res. Fischer, P., Bonow, I., Buttner, D.W., Kamal, I.H.and Liebau, E.
2003 Cloning and Biochemical Characterization of Blisterase, a Subtilisin-like Convertase from the Filarial Parasite, Onchocerca volvulus. J.Biol.Chem. Poole, C.B., Jin, J.and McReynolds, L.A.
2003 Assembly of high-affinity insulin receptor agonists and antagonists from peptide building blocks Proc. Natl. Acad. Sci. USA Schaffer, L., et al.
2003 A fusion of disciplines: chemical approaches to exploit fusion proteins for functional genomics Chembiochem Johnsson N. and Johnsson K.
2003 A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes. Nucl.Acids Res. Roberts, R.J., Belfort, al.
2003 A general method for the covalent labeling of fusion proteins with small molecules in vivo Nature Biotechnology Keppler A. et al.
2003 Coevolution of an aminoacyl-tRNA synthetase with its tRNA substrates Proc. Natl. Acad. Sci. USA Salazar, J.C., et al.
2003 Generation of an affinity column for antibody purification by intein-mediated protein ligation. J.Immunol.Methods Sun, L., Ghosh, I.and Xu, M.Q.
2003 DNA -repair protein hHR23a alters its protein structure upon binding proteasomal subunit S5a Proc. Natl. Acad. Sci. USA Walters, K.J., et al.
2003 Generation of the R2 subunit of ribonucleotide reductase by intein chemistry: insertion of 3-nitrotyrosine at residue 356 as a probe of the radical initiation process Biochemistry Yee, C.S., et al.
2003 Induced protein dimerizaton in vivo through covalent labeling JACS Gendreizig, S. et al.
2003 Glucocorticoid Receptor-like Zn(Cys)4 Motifs in Bsl I Restriction Endonuclease. J.Mol.Biol. Vanamee, E.S., Hsieh, P.C., Zhu, Z., Yates, D., Garman, E., Xu, S.Y.and Aggarwal, A.K.
2003 Covalent labeling of fusion proteins with chemical probes in living cells Chimia Gendreizig S. et al.
2003 Covalent and selective immobilization of fusion proteins JACS Kindermann M. et al.
2003 Crystal structure of a mini-intein reveals a conserved catalytic module involved in side chain cyclization of asparagine during protein splicing. J.Biol.Chem. Ding, Y., Xu, M.-Q., Ghosh, I., Chen, X., Ferrandon, S., Lesage, G., Rao, Z.
2003 Directed evolution of O6-alkylguanine-DNA alkyltransferase for efficient labeling of fusion proteins with small molecules in vivo Chem. Biol.  Juillerat A. et al.
2003 Cytosine methylation by the SuaI restriction-modification system: implications for genetic fidelity in a hyperthermophilic archaeon. J.Bacteriol. Grogan, D.W.
2000 A simple in vitro Tn7-based transposition system with low target site selectivity for genome and gene analysis. Nucl.Acids Res. Biery, M.C., Stewart, F.J., Stellwagen, A.E., Raleigh, E.A.and Craig, N.L.
2003 Crystallization of restriction endonuclease SfiI in complex with DNA Acta Crystallogr. D Biol. Crystallogr. Viadiu, H., Vanamee, E.S., Jacobson, E.M., Schildkraut, I. and Aggarawl, A.K.
2000 Characterization of the Specific DNA Nicking Activity of Restriction Endonuclease N.BstNBI. Biol.Chem. Morgan, R., Calvet, C., Demeter, M., Agra, R.and Kong, H.
2000 An alternative protein splicing mechanism for inteins lacking an N-terminal nucleophile. EMBO J. Southworth, M.W., Benner, J.and Perler, F.B.
2000 Cloning, Expression and Purification of a Thermostable Nonhomodimeric Restriction Enzyme, BslI J.Bacteriol. Hsieh, P.-C., Xiao, J.-P., O'Loane, D.and Xu, S.-Y.
2000 Functional analysis of putative restriction-modification system genes in the Helicobacter pylori J99 genome. Nucl.Acids Res. Kong, H., Lin, L.F., Porter, N., Stickel, S.Byrd, D., Posfai, J.and Roberts R.J.
2000 Expression and purification of recombinant proteins by fusion to maltose-binding protein. Mol.Biotechnol. Riggs, P.
2000 Fusions to Self-Splicing Inteins for Protein Purification. Methods in Enzymology Xu, M.Q., Paulus, H.and Chong, S.
2000 Dissecting the Chemistry of Protein Splicing and its Applications Angew.Chem.Int.Ed. Noren, C.J., Wang, J.and Perler, F.B.
2000 Crystal Structure of the Complex of Brugia Malayi Cyclophilin and Cyclosporin A. Protein Sci. Ellis, P.J., Carlow, C.K.S., Ma, D.and Kuhn, P.
2000 Construction and use of pIII-displayed peptide libraries Phage Display: A Laboratory Manual Noren, K.A., Saltman, L.H.and Noren, C.J.
2000 Crystallization of Restriction Endonuclease BamHI with Nonspecific DNA. J.Struct.Biol. Viadiu, H., Kucera, R., Schildkraut, I.and Aggarwal, A.K.
2000 Identification of the Metal-Binding Sites of Restriction Endonucleases by Fe2+-Mediated Oxidative Cleavage. Biochemistry Hlavaty, J.J., Benner, J.S., Hornstra, L.J.and Schildkraut, I.
2000 Crystallization and preliminary X-ray diffraction analysis of MspI restriction endonuclease in complex with its cognate DNA. Acta Crystallogr.D.Biol.Crystallogr. O'Loughlin, T.J., Xu, Q., Kucera, R.B., Dorner, L.F., Sweeney, S., Schildkraut, I.and Guo, H.-C.
2000 Hybrid mouse-prokaryotic DNA (Cytosine-5) methyltransferase retain the specificity of the parental C-terminal domain. EMBO J. Pradhan, S and Roberts, R.J.
2000 Implementation of Automation in a Small-Scale DNA Sequencing Core Facility. J.Biomolecular Techniques Ware, J.L., Moran, L., Lin, C.-L.and Slatko, B.
2000 Identification of type II restriction and modification systems in Helicobacter pylori reveals their substantial diversity among strains. Proc.Natl.Acad.Sci.USA Xu, Q., Morgan, R.D., Roberts, R.J.and Blaser, M.J.
2000 Methyl-specific DNA Binding by McrBC, a Modification-dependent Restriction Enzyme. J.Mol.Biol. Stewart, F.J., Panne, D., Bickle, T.A.and Raleigh, E.A.
2000 InBase, the Intein Database. Nuc.Acids Res. Perler, F.B.
2000 One step purification of recombinant human Neurotrophic factor-3 with the splicing function of intein. Chin.J.Biochem.Mol.Biol. Yuan, J.M., Li, Z.Y., Wang, Y.M.and Xu., M.-Q.
2000 Generation of a dual-labeled fluorescence biosensor for Crk-II phosphorylation using solid-phase expressed protein ligation Chem. Biol Cotton, G.J. and Muir, T.W.
2000 Protein Splicing in the Absence of an Intein Penultimate Histidine. J.Biol.Chem. Chen, L., Benner, J.and Perler, F.
2000 Protein splicing and its applications. Curr.Opin.Biotech. Perler, F.B.and Adam, E.
2000 Purification of the Novel Endonuclease, Hpy188I, and Cloning of Its Restriction-Modification Genes Reveal Evidence of Its Horizontal Transfer to the Helicobacter pylori Genome. J.Biol.Chem. Xu, Q., Stickel, S., Roberts, R.J., Blaser, M.J.and Morgan, R.D.
2000 Phage Display of Selenopeptides. J.Amer.Chem.Soc. Sandman, K.E., Benner, J.S.and Noren, C.J.
2000 Protein trans-Splicing and Cyclization by a Naturally Split Intein from the dnaE Gene of Synechocystis Species PCC6803. J.Biol.Chem. Evans, T.C., Martin, D., Kolly, R., Panne, D., Sun, L., Ghosh, I., Chen, L., Benner, J., Liu, X-Q and Xu, M-Q
2000 The filarial genome project: analysis of the nuclear, mitochondrial and endosymbiont genomes of Brugia malayi. Int.J.Parasitol. Williams, S.A., Lizotte-Waniewski, M.R., Foster, J., Guiliano, D., Daub, J., Scott, A.L., Slatko, B.and Blaxter, M.L.
2000 The efficiency of Escherichia coli selenocysteine insertion is influenced by the immediate downstream nucleotide. Nucl.Acids Res. Sandman, K.E.and Noren, C.J.
2000 Understanding the immutability of restriction enzymes: crystal structure of BglII and its DNA substrate at 1.5 angstrom resolution. Nature Struct.Biol. Lukacs, C.M., Kucera, R., Schildkraut, I.and Aggarwal, A.K.
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1999 Deep within the Filarial Genome: Progress of the Filarial Genome Project. Parasitology Today The Filarial Genome Project
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1999 The in Vitro Ligation of Bacterially Expressed Proteins Using an Intein from Methanobacterium thermoautotrophicum. J.Biol.Chem. Evans, T.C., Benner, J.and Xu, M-Q
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1999 Regulation of 4E-BP1 phosphorylation: a novel two-step mechanism. Genes & Devel. Gingras, A-C., Gygi, S.P., Raught, B., Polakiewicz, R.D., Abraham, R.T., Hoekstra, M.F., Aebersold, R.and Sonenberg, N.
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1999 Purification of Proteins Fused to Either the Amino or Carboxy Terminus of the Mycobacterium xenopi Gyrase A Intein. Cloning and Expression vectors for Gene Function Analysis Southworth, M.W., Amaya, K., Evans, T.C., Xu, M.Q.and Perler, F.B.
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2004 An rxr/usp homolog from the parasite nematode, Dirofilaria immitis. Gene Shea, C., Hough, D., Xiao, J., Tzertzinis, G.and Maina, C.V.
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2004 cDNA cloning and characterization of a secreted luciferase from the luminous Japanese ostracod, Cypridinanoctiluca Biosci. Biotechnol. Biochem. Nakajima, Y., Kobayashi, K., Yamagishi, K., Enomoto, T. and Ohmiya, Y.
2004 Changing the Enzymatic Activity of T7 Endonuclease by Mutations at the Beta-Bridge Site: Alteration of Substrate Specificity Profile and Metal Ion Requirements by Mutation Distant from the Catalytic Domain. Biochemistry Guan, C., Kumar, S., Kucera, R.and Ewel, A.
2004 cDNA cloning and characterization of a secreted luciferase from the luminous Japanese ostracod, Cypridina noctiluca Biosci. Biotechnol. Biochem. Nakajima, Y., Kobayashi, K., Yamagashi, K., Enomoto, T., Ohmiya, Y.
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2004 Helicase-dependent isothermaol DNA amplification EMBO Rep. Vincent, M., Xu, Y.and Kong, H.
2004 Engineering Strand-specific DNA Nicking Enzymes fro the Type IIS Restriction Endonucleases BsaI, BsmBI and BsmAI. J.Mol.Biol. Zhu, Z., Samuelson, J.C., Zhou, J., Dore, A.and Xu, S.-Y.
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2004 Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with Chromomethylase3. EMBO J. Lindroth, A.M., Shultis, D., Jasencakova, Z., Fuchs, J., Johnson, L., Scubert, D., Patnaik, D., Pradhan, S., Goodrich, J., Schubert, Il, Jenuwein, T., Khorasanizadeh, S.and Jacobsen, S.E
2004 Construction of BAC libraries from the parasitic nematode Brugia malayi and physical mapping of the genome of its Wolbachia endosymbiont. Int.J.Parasitol. Foster, J.M., Kumar, S., Ganatra, M.B., Kamal, I.H., Ware, J., Ingram, J., Pope-Chappell, J., Guiliano, D., Whitton, C., Daub, J., Blaxter, M.L.and Slatko, B.E.
2004 Comparative Kinetics of Nucleotide Analog Incorporation by Vent DNA Polymerase. J.Biol.Chem. Gardner, A.F., Joyce, C.M.and Jack, W.E.
2004 Deficiencies in the essential Smp3 mannosyltransferase block glycosylphosphatidylinositol assembly and lead to defects in growth and cell wall biogenesis in Candida albicans. Microbiology Grimme, S.J., Colussi, P.A., Taron,C.H.and Orlean, P.
2004 Crystal Structure of BstYI at 1.85 Angstrom Resolution: A Thermophilic Restriction Endonuclease with Overlapping Specificities to BamHI and BglII. J.Molec.Biol. Townson, S.A., Samuelson, J.C., Vanamee, E.S., Edwards, T.A., Escalante, C.R., Xu, S.-Y.and Aggarwal, A.K.
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2004 Human Smp3p adds a fourth mannose to yeast and human glycosylphosphatidylinositol precursors in vivo. J.Biol.Chem. Taron, B.W., Colussi, P.A., Wiedman, J.M., Orlean, P.and Taron, C.H.
2004 Cloning of the thermostable alpha-amylase gene from Pyrococcus woesei in Escherichia coli: isolation and some properties of the enzyme Mol. Biotechnol. Grzybowska, B., Szweda, P. and Synowiecki, J.
2004 Semisynthesis of a segmental isotopically labeled protein splicing precursor: NMR evidence for an unusual peptide bond at the N-extein-intein junction Proc. Natl. Acad. Sci. USA Romanelli, A., et al.
2004 Segmentally Variable Genes: A new perspective on adaptation. PLoS Biology Zheng, Y., Roberts, R.J., and Kasif, S.
2004 Rescue of protein splicing activity from a Magnetospirillum magnetotacticum intein-like element. Biochem.Soc.Trans. Southworth, M.W., Yin, J.and Perler, F.B.
2004 Specific and covalent targeting of conjugating and deconjugating enzymes of ubiquitin-like proteins Mol. Cell Biol. Hemelaar, al.
2004 Soluble expression and affinity purification of functional domain of human acetylcholine receptor alpha-subunit by the modulation of maltose binding protein. Biotechnol Lett. Li, Z.Y., Li, Y.J., Guo, C.Y., Shi, Y.W., Xu, M-Q., Trommer, W.E.and Yuan, J.M.
2004 Site-specific conjugation of oligonucleotides to the C-terminus of recombinant protein by expressed protein ligation Bioorg. Med. Chem. Lett. Takeda, S.,et al.
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2004 Intein-mediated fusion expression, high efficient refolding, and one-step purification of gelonin toxin. Protein Expr.Purif. Guo, C.Y., Li, Z., Xu, M.Q., Wise, J.G., Trommer, W.E.and Yuan, J.
2004 Producing peptide arrays for epitope mapping by intein-mediated protein ligation. BioTechniques Sun, L., Rush, J., Ghosh, I., Maunus, J.R.and Xu, M.Q.
2004 Mutational Analysis of Protein Splicing, Cleavage, and Self-Association Reactions Mediated by the Naturally Split Ssp DnaE Intein. Biochemistry Nichols, N.M.and Evans, T.C.Jr.
2004 Manipulation of carrier proteins in antibiotic biosynthesis Chem. Biol. La Clair, J.J. et al.
2004 Specific labeling of cell surface proteins with chemically diverse compounds J .Am. Chem. Soc.  George N. et al.
2004 The isolation of strand-specific nicking endonucleases from a randomized SapI expression library. Nucl.Acids Res. Samuelson, J.C., Zhu, Z.and Xu, S.Y.
2004 The ins and outs of gene expression control. Nat.Biotechnol. Perler, F.B.
2004 The first amendment and scientific freedom in the era of bioterrorism. J.Biolaw and Business Anton, B.P.
2004 Western blot analysis of Src kinase assays using peptide substrates ligated to a carrier protein. BioTechniques Xu, J., Sun, L., Ghosh, I.and Xu, M.-Q.
2004 Versatile protein biotinylation strategies for potential high-throughput proteomics J Am. Chem. Soc. Lue, R.Y., et al.
2004 Transposon-mediated linker insertion scanning mutagenesis of the Escherichia coli McrA endonuclease. J.Bacteriol. Anton, B.P.and Raleigh, E.A.
2004 The bacterial catalase from filarial DNA preparations derives from common pseudomonad contaminants and not from Wolbachia endosymbionts. Parasitol.Res. Foster, J., Baldo, L., Blaxter, M., Hendle-Duhrsen, K., Whitton, C., Slatko, B.and Bandi, C
2004 Structure of the Q237W mutant of HhaI DNA methyltransferase: An insight into protein-protein interactions. Biol.Chem. Dong, A., Zhou, L., Zhang, X., Stickel, S., Roberts, R.J.and Cheng, X.
2004 Structural characterization and comparative phylogenetic analysis of E.coli HemK, a protein (N5)-glutamine methyltransferase. Mol.Microbiol. Yang, Z., Shipman, L., Zhang, M., Anton, B., Roberts, R.J.and Cheng, X.
2004 SPR-based interaction studies with small molecular weight ligands using hAGT fusion proteins Anal. Biochem. Huber W. et al.
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2004 Substrate specificity and kinetic mechanism of mammalian G9a histone H3 methyltransferase. J.Biol.Chem. Patnaik, D., chin, H.G., esteve, P.O., Benner, J., Jacobsen, S.E.and Pradhan, S.
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2013 A membrane-bound NAC transcription factor, ANAC017, mediates mitochondrial retrograde signaling in Arabidopsis Plant Cell Ng S, Ivanova A, Duncan O, Law SR, Van Aken O, De Clercq I, Wang Y, Carrie C, Xu L, Kmiec B, Walker H, Van Breusegem F, Whelan J, Giraud E Gibson Assembly®
2013 A near-infrared fluorophore for live-cell super-resolution microscopy of cellular proteins. Nature Chemistry Lukinavicius, G., Umezawa, K., Olivier, N., Honigmann, A., Yang, G., Plas, T., Mueller, M., Reymond, L., Correa, I.R., Jr., Luo, Z.-G., Schultz, C., Lemke, E.A., Heppenstall, P., Eggeling, C., Manley, S. and Johnsson, K.
2013 Single-stranded DNA library preparation for the sequencing of ancient or damaged DNA Nat. Protoc. Gansauge MT, Meyer M.
2013 Substrates for Improved Live-Cell Fluorescence Labeling of SNAP-tag Current Pharmaceutical Design Ivan R. Corrêa Jr, Brenda Baker, Aihua Zhang, Luo Sun, Christopher R. Provost, Grazvydas Lukinavicius, Luc Reymond, Kai Johnsson, and Ming-Qun Xu
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2011 Biochemical Characterization of a Structure-Specific Resolving Enzyme from Sulfolobus Islandicus Rod-Shaped Virus 2. PLoS ONE Gardner, A.F., Guan, C.and Jack, W.E.
2011 A type IV modification-dependent restriction enzyme SauUSI from Staphylococcus aureus subsp.aureus USA300. Nucl.Acids.Res. Xu, S.Y., Corvaglia, A.R., Chan, S.H., Zheng, Y.and Linder, P.
2011 A SNAP-tagged detivative of HIV-1 - A versatile tool to study virus-cell interactions PLoS One Eckhardt, M. et al.
2011 Characterization of MspNI (G/GWCC) and MspNII (R/GATCY), novel thermostable Type II restriction endonucleases from Meiothermus sp., isoschizomers of AvaII and BstYI Mol Biol Rep. Gupta, R., Xu, S.Y., Sharma, P. and Capalash, N.
2011 Characterization of Sulfolobus islandicus rod-shaped virus 2 gp19, a single-strand specific endonuclease. Extremophiles Gardner, A.F., Prangishvili, D.and Jack.W.E.
2011 Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq Genome Res. Saiful, I., Kjällquist, U., Moliner, A. et al
2011 Branched Intermediate Formation is the Slowest Step in th Protein Splicing Reaction of the Ala1 KbA Intein from Methanococcus jannaschii Saleh, L., Southworth, M.W., Considine, N., O'Neill, C., Benner, J., Bollinger, J.M. and Perler, F.B.
2011 C.elegans galectins LEC-6 and LEC-10 interact with similar glycoconjugates in the intestine. J Biol Chem. Maduzia, L.L., Yu, E.and Zhang, Y.
2011 Characterization and crystal structure of the type IIG restriction endonuclease RM.BpuSI. Nucl.Acids.Res. Shen, B.W., Xu, D., Chan, S.H., Zheng, Y., Zhu, Z., Xu, S.Y.and Stoddard, B.L.
2011 A set of aspartyl protease-deficient strains for improved expression of heterologous proteins in Kluyveromyces lactis FEMS Yeast Res. Ganatra, M.B., Rainauskas, S., Hong J.M., Taylor, T.E., Denson, J.P.M., Esposito, D., Read, J.D., Schmeisser, H., Zoon, K.C., Hartley, J.L. and Taron, C.H.
2011 6-Thioguanine reactivates epigenetically silenced genes in acute lymphoblastic leukemia cells by facilitating proteasome-mediated degradation of DNMT1 Canc. Res.
2011 A highly controllable reconstituted cell-free system--a breakthrough in protein synthesis research Curr. Pharm. Biotechnol. Ohashi, H., Kanamori, T., Shimizu, Y. and Ueda, T.
2011 A methylation and phosphorylation switch between an adjacent lysine and serine determines human DNMT1 stability. Nat Struct Mol Biol. Estève, P.O., Chang, Y., Samaranayake, M., Upadhyay, A.K., Horton, J.R., Feehery, G.R., Cheng, X.and Pradhan, S.
2011 5-aza-2'-deoxycytidine and interleukin-1 cooperate to regulate matrix metalloproteinase-3 gene expression. Int.J.Cancer Couillard, J., Estève, P.O., Pradhan, S.and St-Pierre, Y.
2011 5-Hydroxymethylcytosine is associated with enhancers and gene bodies in human embryonic stem cells Gen. Biol. Stroud, H., et al.
2011 6-Thioguanine Reactivates Epigenetically Silenced Genes in Acute Lymphoblastic Leukemia Cells by Facilitating Proteasome-mediated Degradation of DNMT1 Cancer Res. Yuan, B., Zhang, J., Wang, H., Xiong, L., Cai, Q., Wang, T., Jacobsen, S., Pradhan, S. andd Wang, Y.
2011 A Radically Different Mechanism for S-Adenosylmethionine-Dependent Methyltransferases. Science Express Grove, T.L., Benner, J.S., Radle, M.I., Ahlum, J.H., Landgraf, B.J., Krebs, C.and Booker, S.J.
2011 A reporter system for assaying influenza virus RNP functionality based on secreted Gaussia luciferase activity Virology J. Zhu, W. et al.
2011 A set of aspartyl protease-deficient strains for improved expression of heterologous proteins in Kluyveromyces lactis FEMS Yeast Res. Ganatra, M.B., Rainauskas, S., Hong, J.M., Taylor, T.E., Denson, J.P.M., Esposito, D., Read, J.D., Schmeisser, H., Zoon, K.C., Hartley, J.L. and Taron, C.H.
2011 A peptide to dimerized translationally controlled tumor protein modulates allergic reactions J. Mol. Med. Kim, M.
2011 A phage-targeting startegy for the design of spatiotemporal drug delivery from grafted matrices Fibrogenesis Tissue Repair Sawada, R. et al.
2011 A piggyBac transposon-based mutagenesis system for the fission yeast Schizosaccharomyces pombe  Nuc. Acids Res. Li, J., Zhang, J.-M., Li, X. et al
2011 Characterization of Type II and III restriction modification systems from Bacillus cereus strains J. Bacteriol. Xu, S.Y., Nugent, R.L., Kasamkattil, J., Fomenkov, A., Gupta, Y., Aggarwal, A., Wang, X., Li, Z., Zheng, Y. and Morgan, R.
2011 Efficient in vivo selection of a novel tumor-associated peptide from a phage display Molecules Veleva, A.N. et al.
2011 Engineering a waste management enzyme to overcome cancer resistance to apoptosis: adding DNase1 to the anti-cancer toolbox Cancer Gene Ther. Rosner, K., Kasprzak, M.F., Horenstein, A.C., Thurston, H.L., Abrams, J., Kerwin, L.Y., Mehregan, D.A. and Mehregan, D.R.
2011 Engineering BL21(DE3) derivative strains to minimize Escherichia coli protein contamination after IMAC purification. Appl. Environ. Microbiol. Robichon, C., Luo, J., Causey, T.B., Benner, J.S. and Samuelson, J.C.
2011 Disruption of PMR1 in Kluyveromyces lactis improves secretion of calf prochymosin J. Sci. Food Agric. Feng, Z., et al.
2011 Docking-dependent ubiquitination of the interferon regulatory factor-1 tumor suppressor protein by the ubiquitin ligase CHIP J. Biol. Chem. Narayan, V., Pion, E., Landré, V., Müller, P. and Ball, K.L.
2011 Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation Nature Ficz, G., et al.
2011 Expanding the genetic code of Escherichia coli with Phosphoserine Science Park, H.S., Hohn, M.J., Umehara, T., Guo. L.T., Osborne, E.M., Benner, J., Noren, C.J., Rinehart, J. and Soll, D.
2011 Expression of heparin sulfate sulfotransferases in Kluyveromyces lactisand preparation of PAPS Glycobiology Advance Access Zhou, X., et al.
2011 Expression of recombinant cytochromes c in E.coli. Methods Mol.Biol. Londer, Y.Y.
2011 Engineering BL21(DE3) derivative strains to minimize Escherichia coli protein contamination after IMAC purification. Appl.Environ.Microbiol. Robichon, C., Luo, J., Causey, T.B., Benner, J.S.and Samuelson, J.C.
2011 Exonucleases Curr.Protoc.Mol.Biol. McReynolds, L.A.and Nichols, N.M.
2011 Expanding the definition of class 3 inteins and their proposed phage origin. J.Bacteriol. Tori, K.and Perler, F.B.
2011 Development of SNAP-Tag Fluorogenic Probes for Wash-Free Fluorescence Imaging. Chembiochem. Sun, X., Zhang, A., Baker, B., Sun, L., Howard, A., Buswell, J., Maurel, D., Masharina, A., Johnsson, K., Noren, C.J., Xu, M-Q and Corrêa, I.R., Jr.
2011 COMBREX – COMputational BRidges to EXperiments. Biochem.Soc.Trans. Roberts, R.J.
2011 COMBREX: a project to accelerate the functional annotation of prokaryotic genomes Nucleic Acids Res. Roberts, R.J., Chang, Y.C., Hu, Z., Rachlin, J.N., Anton, B.P., Pokrzywa, R.M., Choi, H.P., Faller, L.L., Guleria, J., Housman, G., Klitgord, N., Mazumdar, V., McGettrick, M.G., Osmani, L., Swaminathan, R., Tao, K.R., Letovsky, S., Vitkup, D., Segre, D., Salzberg, S.L., Delisi, C., Steffen, M. and Kasif, S.,
2011 Comparative characterization of the PvuRts1I family and application in mapping genomic 5-hydroxymethylcytosine. Nucl.Acids Res. Wang, H., Guan, S., Quimby, A., Cohen-Karni, D., Pradhan, S., Wilson, G.G., Roberts, R.J., Zhu, Z.and Zheng, Y.
2011 Chemical Modification of Proteins in Living Cells Methods in Protein Chemistry Hanek, A.; Corrêa, I. R., Jr.
2011 Chitosan but not chitin activates the inflammasome by a mechanism dependent upon phagocytosis. J Biol Chem. Bueter, C.L., Lee, C.K., Rathinam, V.A., Healy, G.J., Taron, C.H., Specht, C.A.and Levitz, S.M.
2011 Cleavage of a model DNA replication fork by a methyl-specific endonuclease. Nucl.Acids.Res. Ishikawa, K., Handa, N.Sears, L., Raleigh, E.A.and Kobayashi, I.
2011 Cyclophosphamide perturbs cytosine methylation in jurkat-T Cells through LSD1-mediated stabilization of DNMT1 Protein Chem. Res. Toxicol. Zhang, J. et al.
2011 Cyclophosphamide Perturbs Cytosine Methylation in Jurkat-T Cells through LSD1-Mediated Stabilization of DNMT1 Protein. Chem.Res.Toxicol. Zhang, J., Yuan, B., Zhang, F., Xiong, L., Pradhan, S.and Wang, Y.
2011 Decoding a Substantial Set of Samples in Parallel by Massive Sequencing PLoS ONE  Neiman, M., Lundin, S., Savolainen, P., Ahmadian, A.
2011 Comparative characterization of the PvuRts1I family of restriction enzymes and their application in mapping genomic 5-hydroxymethylcytosine Nucleic Acids Res Wang H, Guan S, Quimby A, Cohen-Karni D, Pradhan S, Wilson G, Roberts RJ, Zhu Z, Zheng Y
2011 Crystallization and preliminary crystallographic analysis of the Type IIL restriction enzyme MmeI in complex with DNA. Acta Crystallogr.F.Structural biology and crystallization communications Callahan, S.J., Morgan, R.D., Jain, R., Townson, S.A., Wilson, G.,G.Roberts, R.J.and Aggarwal, A.K.
2011 Comparitive characterization of the PvuRts11 family and application in mapping genomic 5-hydroxymethylcytosine Nucl. Acids Res.
2011 Endonucleases Curr Protoc Mol Biol Nichols, N.M.
2011 DNA Ligases Curr Protoc Mol Biol Lohman, G.J., Tabor, S., Nichols, N.M.
2015 A Proline-Rich Domain in the Genotype 4 Hepatitis E Virus ORF3 PLoS One Wang H., Fangxiao J., Liang H., Gu H.
2015 A simple bridging flocculation assay for rapid, sensitive and stringent detection of gene specific DNA methylation Sci Rep Wee E., Ngo T., Trau M. Epigenetics,DNA Enrichment
2015 A New Approach to Produce HIV-1 Envelope Trimers: BOTH CLEAVAGE AND PROPER GLYCOSYLATION ARE ESSENTIAL TO GENERATE AUTHENTIC TRIMERS. J Biol Chem AlSalmi W., Mahalingam M., Ananthaswamy N., Hamlin C., Flores D., Gao G., Rao V.B.
2015 A high-throughput assay for the comprehensive profiling of DNA ligase fidelity Nucleic Acids Res Lohman GJ, Bauer RJ, Nichols NM, Mazzola L, Bybee J, Rivizzigno D, Cantin E, Evans TC Jr.
2015 A database for DNA restriction and modification: enzymes, genes and genomes. Nucleic Acids Research Roberts, R.J., Vincze, T., Posfai, J., Macelis, D.
2015 A metagenomics and case-control study to identify viruses associated with bovine respiratory disease. J Virol Terry Fei Fan Ng, Nikola O Kondov, Xutao Deng, Alison Van Eenennaam, Holly L Neibergs, Eric Delwart cDNA Synthesis
2015 A lipid switch unlocks Parkinson's disease-associated ATP13A2 Proc Natl Acad Sci U S A Holemans T., Sørensen DM., Veen S., Martin S., Hermans D., Kemmer GC., Haute C., Baekelandt V., Pomorski TG., Agostinis P., Wuytack F., Palmgren M., Eggermont J., Vangheluwe P.
2015 Activation and enhancement of Fredericamycin A production in deepsea-derived Streptomyces somaliensis SCSIO ZH66 by using ribosome engineering and response surface methodology. Microb Cell Fact Yonghe Zhang, Huiming Huang, Shanshan Xu, Bo Wang, Jianhua Ju, Huarong Tan, Wenli Li High-Fidelity PCR
2015 A Structural and Functional Comparison Between Infectious and Non-Infectious Autocatalytic Recombinant PrP Conformers Sci Rep Noble GP., Wang DW., Walsh DJ., Barone JR., Miller MB., Nishina KA., Li S., Supattapone S.
2015 Production of bioactive chicken (Gallus gallus) follistatin-type proteins in E. coli Sci Rep Lee S.B., Park S.K., Kim Y.S.
2015 Proteomic Analysis Reveals Aberrant O-GlcNAcylation of Extracellular Proteins from Breast Cancer Cell Secretion Mol Biol Cell Netsirisawan P., Chokchaichamnankit D., Srisomsap C., Svasti J., Champattanachai V.
2015 Rapid detection of equine coronavirus by reverse transcription loop-mediated isothermal amplification. J Virol Methods Manabu Nemoto, Yoshinori Morita, Hidekazu Niwa, Hiroshi Bannai, Koji Tsujimura, Takashi Yamanaka, Takashi Kondo Isothermal Amplification
2015 Pre-Steady-State Kinetic Analysis of a Family D DNA Polymerase from Thermococcus sp. 9°N Reveals Mechanisms for Archaeal Genomic Replication and Maintenance J Biol Chem Schermerhorn KM, Gardner AF
2015 Probing the Run-On Oligomer of Activated SgrAI Bound to DNA PLoS One Shah, S., Sanchez, J., Stewart, A., et al. Cloning & Synthetic Biology,DNA Preparation,Restriction Enzyme Digestion,Restriction Enzyme Digestion
2015 Production of a Highly Protease-Resistant Fungal α-Galactosidase in Transgenic Maize Seeds for Simplified Feed Processing Sci Rep Yang W., Zhang Y., Zhou X., Zhang W., Xu X., Chen R., Meng Q., Yuan J., Yang P., Yao B.
2015 Rapid isolation and single-molecule analysis of ribonucleoproteins from cell lysate by SNAP-SiMPull RNA Margaret L Rodgers, Joshua Paulson, Aaron A Hoskins SNAP Cell,SNAP Surface
2015 REBASE - A database for DNA restriction and modification: enzymes, genes and genomes Nucleic Acids Res Roberts, R.J., Vincze, T., Posfai, J., Macelis, D.
2015 Selective expression of sense and antisense transcripts of the sushi-ichi-related retrotransposon - derived family during mouse placentogenesis. Retrovirology Christine Henke, Pamela L Strissel, Maria-Theresa Schubert, Megan Mitchell, Claus C Stolt, Florian Faschingbauer, Matthias W Beckmann, Reiner Strick High-Fidelity PCR
2015 Sequence-specific DNA nicking endonucleases Biomol concepts Xu, S-Y
2015 Rapid Preparation of Released N-Glycans for HILIC Analysis Using a Labeling Reagent that Facilitates Sensitive Fluorescence and ESI-MS Detection Anal Chem Lauber, M.A., Yu, Y.Q., Brousmiche,D.W., Hua, Z., Koza, S.M., Magnelli, P., Guthrie, E., Taron, C.H. and Fountain, K.J.
2015 Rational design of 'controller cells' to manipulate protein and phenotype expression. Metab Eng Amin Zargar, David N Quan, Milad Emamian, Chen Yu Tsao, Hsuan-Chen Wu, Chelsea R Virgile, William E Bentley High-Fidelity PCR
2015 Real-Time Sequence-Validated Loop-Mediated Isothermal Amplification Assays for Detection of Middle East Respiratory Syndrome Coronavirus (MERS-CoV). PLoS One Sanchita Bhadra, Yu Sherry Jiang, Mia R Kumar, Reed F Johnson, Lisa E Hensley, Andrew D Ellington Isothermal Amplification
2015 Pre-steady-state Kinetic Analysis of a Family D DNA Polymerase from Thermococcus sp. 9°N Reveals Mechanisms for Archaeal Genomic Replication and Maintenance J Biol Chem Schermerhorn KM, Gardner AF.
2015 microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach. Parasites & Vectors Macchiaroli, N. et al.
2015 Microscale purification of antigen-specific antibodies Sci Rep Brown EP., Normandin E., Osei-Owusu NY., Mahan AE., Chan YN., Lai JI., Vaccari M., Rao M., Franchini G., Alter G., Ackerman ME.
2015 Multi-Dimensional Measurement of Antibody-Mediated Heterosubtypic Immunity to Influenza. Sci Rep Wang J., Hilchey SP., Hyrien O., Huertas N., Perry S., Ramanunninair M., Bucher D., Zand MS.
2015 Label-free single-cell protein quantification using a drop-based mix-and-read system. Sci. Rep. Abbaspourrad A, Zhang H, Tao Y, Cui N, Asahara H, Zhou Y, Yue D, Koehler SA, Ung LW, Heyman J, Ren Y, Ziblat R, Chong S, Weitz DA.
2015 Mammalian DNA (cytosine-5) methyltransferase mechanisms and RNA-mediated inhibition for future therapies. Epigenetics Diagnostic Therapy Zhang, G., Esteve, P.O., Chin, H.G. and Pradhan, S
2015 Mammalian DNA (cytosine-5) methyltransferase mechanisms and RNA-mediated inhibition for future therapies. Epigenetics Diagnostic Therapy Zhang, G., Esteve, P.O., Chin, H.G. and Pradhan, S
2015 Multivalent site-specific phage modification enhances the binding affinity of receptor ligands Bioconjug Chem Beech, J., Saleh, L., Frentzel, J., Figler, H., Correa, I.R. Jr., Baker, B., Ramspacher, C., Marshall, M., Dasa, S., Linden, J., Noren, C.J. and Kelly, K.A.
2015 Overview of Target Enrichment Strategies. current Protocols in Molecular Biology Kozarewa, I., Armisen, J., Gardner, A.F., Slatko, B.E. and Hendrickson, C.L.
2015 Phylogeny and differentiation of reptilian and amphibian ranaviruses detected in europe PLoS One Stöhr AC, López-Bueno A, Blahak S, Caeiro MF, Rosa GM, Alves de Matos AP, Martel A, Alejo A, Marschang RE
2015 Physiologic Stresses Reveal a Salmonella Persister State and TA Family Toxins Modulate Tolerance to These Stresses PLoS One Silva-Herzog E, McDonald EM, Crooks AL, Detweiler CS.
2015 Na, K-ATPase α3 is a death target of Alzheimer patient amyloid-β assembly. Proc Natl Acad Sci U S A Ohnishi T., Yanazawa M., Sasahara T., Kitamura Y., Hiroaki H., Fukazawa Y., Kii I., Nishiyama T., Kakita A., Takeda H., Takeuchi A., Arai Y., Ito A., Komura H., Hirao H., Satomura K., Inoue M., Muramatsu S., Matsui K., Tada M., Sato M., Saijo E., Shigemitsu Y., Sakai S., Umetsu Y., Goda N., Takino N., Takahashi H., Hagiwara M., Sawasaki T., Iwasaki G., Nakamura Y., Nabeshima Y., Teplow D.B., Hoshi M.
2015 Novel recA-Independent Horizontal Gene Transfer in Escherichia coli K-12 PLoS Kingston AW, Roussel-Rossin C, Dupont C, Raleigh EA.
2015 Serum N-Glycans: A New Diagnostic Biomarker for Light Chain Multiple Myeloma Sci Rep Chen J., Fang M., Zhao YP., Yi CH., Ji J., Cheng C., Wang MM., Gu X., Sun QS., Chen XL., Gao CF.
2015 Novel recA-Independent Horizontal Gene Transfer in Escherichia coli K-12 PloS One Kingston, A. W., Roussel-Rossin, C., Dupont, C., Raleigh, E. A.
2015 Tissue-specific epigenetics in gene neighborhoods: myogenic transcription factor genes Hum Mol Genet Chandra, S., Terragni, J., Zhang, G., Pradhan, S., Haushka, S., Johnston, D., Baribault, C., Lacey, M. and Ehrlich, M.
2015 Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont BMC Genomics Luck, A.N., Anderson, K.G., McClung, C.M., VerBerkmoes, N.C., Foster, J.M., Michalski, M.L. and Slatko, B.E. Library Preparation for Next Generation Sequencing
2015 TonEBP modulates the protective effect of taurine in ischemia-induced cytotoxicity in cardiomyocytes Cell Death Dis. Yang YJ, Han YY, Chen K, Zhang Y, Liu X, Li S, Wang KQ, Ge JB, Liu W, Zuo J.
2015 The foles of family B and d DNA polymerases in thermococcus species 9 degrees n okazaki fragment maturation J Biol Chem Greenough, L., Kelman, Z. and Gardner, A.F.
2015 The ribosome quality control pathway can access nascent polypeptides stalled at the Sec61 translocon Mol Biol Cell Malsburg K., Shao S., Hegde RS.
2015 The RpoE Stress Response Pathway Mediates Reduction of the Virulence of Enteropathogenic Escherichia coli by Zinc. Appl Environ Microbiol Yuan Xue, Jossef Osborn, Anand Panchal, Jay L Mellies High-Fidelity PCR
2015 Transcriptional Analysis of Deinococcus radiodurans Reveals Novel Small RNAs That Are Differentially Expressed under Ionizing Radiation. Appl. Environ. Microbiol. Tsai, H.C. et al
2015 Bias in ligation-based small RNA sequencing library construction is determined by adaptor and RNA structure PLoS One Fuchs, R.T., Sun, Z., Zhuang, F., et al. RNA Analysis
2015 Converting a Sulfenic Acid Reductase into a Disulfide Bond Isomerase Antioxid Redox Signal Chatelle C, Kraemer S, Ren G, Chmura H, Marechal N, Boyd D, Roggemans C, Ke N, Riggs P, Bardwell J, Berkmen M
2015 CRISPR/Cas9 nuclease cleavage combined with Gibson assembly for seamless cloning Biotechniques Wang JW, Wang A, Li K, Wang B, Jin S, Reiser M, Lockey RF
2015 Upregulation of glycans containing 3' fucose in a subset of pancreatic cancers uncovered using fusion-tagged lectins. J Proteome Res Singh S., Kuntal P., Yadav J., Tang H., Partyka K., Kletter D., Hsueh P., Ensink E., Kc B., Hostetter G., Xu E.H., Bern M., Smith D.F., Mehta A.S., Brand R., Melcher K., Haab B.B.
2015 VirB6 and VirB10 from the Brucella type IV secretion system interact via the N-terminal periplasmic domain of VirB6 FEBS Lett Giraldo A.MV., Mary C., Sivanesan D., Baron C.
2015 Visual detection of isothermal nucleic acid amplification using pH-sensitive dyes Biotechniques Tanner, N.A., Zhang, Y. and Evans, T.C., Jr.
2015 The diversity of Bet v 1-specific IgG4 antibodies remains mostly constant during the course of birch pollen immunotherapy J Allergy Clin Immunol Subbarayal B., Schiller D., Möbs C., Pfützner W., Jahn-Schmid B., Gepp B., Breiteneder H., Vieths S., Bohle B.
2015 Stem cells. Asymmetric apportioning of aged mitochondria between daughter cells is required for stemness Science P, Katajisto., Dohla, J., Chaffer, CL., Pentinmikko, N., Marjanovic, N., Igbal, S., Zoncu, R., Chen, W., Weinberg, RA., Sabatini, DM. SNAP Cell
2015 Structural and biochemical studies of a moderately thermophilic exonuclease I from Methylocaldum szegediense PLoS One Fei, L., Tian, S., Moysey, R., Misca, M., Barker, J.J., Smith, M.A., McEwan, P.A., Pilka, E.S., Crawley, L., Evans, T. and Sun, D.
2015 Structural basis of asymmetric DNA methylation and ATP-triggered long-range diffusion by EcoP15I Nature Communications Gupta, Y.K., Chan, S.H., Xu, S.Y., and Aggarwal, A.K.
2015 Simultaneous generation of many RNA-seq libraries in a single reaction Nat Methods Shishkin AA, Giannoukos G, Kucukural A, Ciulla D, Busby M, Surka C, Chen J, Bhattacharyya RP, Rudy RF, Patel MM, Novod N, Hung DT, Gnirke A, Garber M, Guttman M, Livny J
2015 Small RNA-mediated DNA (cytosine-5) methyltransferase 1 inhibition leads to aberrant DNA methylation Nucleic Acids Res Zhang, G., Esteve, P.O., Chin, H.G., Terragni, J., Dai, N., Correa, I.R. Jr. and Pradhan, S.
2015 Specificity of the ModAll, ModA12 and ModD1 epigenetic regulator N6-adenine DNA methyltransferases of Neisseria Meningitidis Nucleic Acids Res Seib, K.L., Jen, F.E., Tan, A., Scott, A.L., Kumar, R., Power, P.M., Chen, L.T., Wu, H.J., Wang, A.H., Hill, D.M., Luyten, Y.A., Morgan, R.D., Roberts, R.J., Maiden, M.C., Boitano, M., Clark, T.A., Korlach, J., Rao, D.N. and Jennings, M.P.
2015 Structure of Naegleria Tet-like dioxygenase (NgTet1) in complexes with a reaction intermediate 5-hydroxymethylcytosine DNA. Nucleic Acids Res Hashimoto H, Pais JE, Dai N, Corrêa IR Jr, Zhang X, Zheng Y, Cheng X.
2015 Ten simple rules to win a nobel prize Roberts, R.J.
2015 Terminal Mannose Residues in Seminal Plasma Glycoproteins of Infertile Men Compared to Fertile Donors Int J Mol Sci Beata O., Jarząb A., Kratz E., Zimmer M., Gamian A., Ferens-Sieczkowska M.
2015 The complete methylome of Helicobacter pylori UM032 BMC Genomics Lee, W.C., Anton, B.P., Wang, S., Baybayan, P., Singh, S., Ashby, M., Chua, E.G., Tay, C.Y., Thirriot, f., Loke, M.F., Goh, K.L., Marshall, B.J., Robert, R.J. and Vadivelu, J.
2015 Sul1 and Sul2 Sulfate Transceptors Signal to Protein Kinase A upon Exit of Sulfur Starvation. J Biol Chem Harish Nag Kankipati, Marta Rubio-Texeira, Dries Castermans, George Diallinas, Johan M Thevelein High-Fidelity PCR
2015 TALEN-mediated targeting of HPV oncogenes ameliorates HPV-related cervical malignancy. J Clin Invest Zheng Hu, Wencheng Ding, Da Zhu, Lan Yu, Xiaohui Jiang, Xiaoli Wang, Changlin Zhang, Liming Wang, Teng Ji, Dan Liu, Dan He, Xi Xia, Tao Zhu, Juncheng Wei, Peng Wu, Changyu Wang, Ling Xi, Qinglei Gao, Gang Chen, Rong Liu, Kezhen Li, Shuang Li, Shixuan Wang, Jianfeng Zhou, Ding Ma, Hui Wang Genome Editing
2015 Targeted Glycoengineering Extends the Protein N-glycosylation Pathway in the Silkworm Silk Gland Sci Rep Asazuma HM., Sohn BH., Kim Y.S., Kuo CW., Khoo KH., Kucharski CA., Fraser MJ., Jarvis DL.
2015 Caspr2 autoantibodies target multiple epitopes. Neurol Neuroimmunol Neuroinflamm Olsen AL., Lai Y., Dalmau J., Scherer SS., Lancaster E.
2015 CD24 tracks divergent pluripotent states in mouse and human cells. Nat Commun Shakiba N., White C.A., Lipsitz Y.Y., Yachie-Kinoshita A., Tonge P.D., Hussein S.M.I., Puri M.C., Elbaz J., Morrissey-Scoot J., Li M., Munoz J., Benevento M., Rogers I.M., Hanna J.H., Heck A.J.R., Wollscheid B., Nagy A., Zandstra P.W.
2015 Cell- and Protein-Directed Glycosylation of Native Cleaved HIV-1 Envelope. J Virol Pritchard L.K., Harvey D.J., Bonomelli C., Crispin M., Doores K.J.
2015 Binding of 14-3-3 reader proteins to phosphorylated DNMT1 facilitates Nucleic Acids Res Estève P., Zhang G., Ponnaluri V., Kanneganti Epigenetics
2015 Biochemical characterization of a Naegleria TET-like oxygenase and its application in single molecule sequencing of 5-methylcytosine Proc Natl Acad Sci USA Pais, J.E., Dai, N., Tamanaha, E., Vaisvila, R., Fomenkov, A.I., Bitinaite, J., Sun, Z., Guan, S., Correa, I.R. Jr., Noren, C.J., Cheng, X., Roberts, R.J., Zheng, Y. and Saleh, L.
2015 Bovine embryo sex determination by multiplex loop-mediated isothermal amplification. Theriogenology Trisadee Khamlor, Petai Pongpiachan, Rangsun Parnpai, Kanchana Punyawai, Siwat Sangsritavong, Nipa Chokesajjawatee Isothermal Amplification
2015 Clinical Evaluation of a Loop-Mediated Isothermal Amplification (LAMP) Assay for Rapid Detection of Neisseria meningitidis in Cerebrospinal Fluid. PLoS One DoKyung Lee, Eun Jin Kim, Paul E Kilgore, Soon Ae Kim, Hideyuki Takahashi, Makoto Ohnishi, Dang Duc Anh, Bai Qing Dong, Jung Soo Kim, Jun Tomono, Shigehiko Miyamoto, Tsugunori Notomi, Dong Wook Kim, Mitsuko Seki Isothermal Amplification
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2015 Complete Genome Sequence of Enteroinvasive Escherichia coli O96:H19 Associated with a Severe Foodborne Outbreak Genome Announc Pettengill EA, Hoffmann M, Binet R, Roberts RJ, Payne J, Allard M, Michelacci V, Minelli F, Morabito S.
2015 Complete Genome Sequence of ER2796, a DNA Methyltransferase-Deficient Strain of Escherichia coli K-12 PLoS One Anton, B.P., Mongodin, E.F., Agrawal, S., Fomenkov, A., Byrd, D.R., Roberts, R.J. and Raleigh, E.A.
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2015 Comparative Analysis of the Glycosylation Profiles of Membrane-Anchored HIV-1 Envelope Glycoprotein Trimers and Soluble gp140. J Virol Go E.P., Herschhorn A., Gu C., Castillo-Menendez L., Zhang S., Mao Y., Chen H., Ding H., Wakefield J.K., Hua D., Liao H.X., Kappes J.C., Sodroski J., Desaire H.
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2015 An alternative pluripotent state confers interspecies chimaeric competency. Nature Jun Wu, Daiji Okamura, Mo Li, Keiichiro Suzuki, Chongyuan Luo, Li Ma, Yupeng He, Zhongwei Li, Chris Benner, Isao Tamura, Marie N Krause, Joseph R Nery, Tingting Du, Zhuzhu Zhang, Tomoaki Hishida, Yuta Takahashi, Emi Aizawa, Na Young Kim, Jeronimo Lajara, Pedro Guillen, Josep M Campistol, Concepcion Rodriguez Esteban, Pablo J Ross, Alan Saghatelian, Bing Ren, Joseph R Ecker, Juan Carlos Izpisua Belmonte High-Fidelity PCR
2015 An IL-27/NFIL3 signalling axis drives Tim-3 and IL-10 expression and T-cell dysfunction Nat Commun Zhu, C., Sakuishi, K., Xiao, S., Sun, Z., Zaghouani, S., Gu, G., Wang, C., Tan, D.J., Wu, C., Rangachari, M., Pertel, T., Jin, H.T., Ahmed, R., Anderson, A.C., Kuchroo, V.K.
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2015 Complete Genome Sequence of Salmonella enterica subsp. enterica Serovar Agona 460004 2-1, Associated with a Multistate Outbreak in the United States Genome Announc Hoffmann M, Payne J, Roberts RJ, Allard MW, Brown EW, Pettengill JB
2015 Glycation of vitronectin inhibits VEGF-induced angiogenesis by uncoupling VEGF receptor-2-αvβ3 integrin cross-talk Mol Biol Cell Wang L., Zhang X., Pang N., Xiao L., Li Y., Chen N., Ren M., Deng X., Wu J.
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2015 Genome-Wide Methylation Patterns in Salmonella enterica Subsp. enterica Serovars PLoS One Pirone-Davies, C., Hoffmann, M., Roberts, R.J., Muruvanda, T., Timme, R.E., Strain, E., Luo, Y., Payne, J., Luong, K., Song, Y., Tsai, Y.C., Boitano, M., Clark, T.A., Korlach, J., Evans, P.S., Allard, M.W.
2015 Human sialic acid acetyl esterase: Towards a better understanding of a puzzling enzyme. Glycobiology Orizio F., Damiati E., Giacopuzzi E., Benaglia G., Pianta S., Schauer R., Schwartz-Albiez R., Borsani G., Bresciani R., Monti E.
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2015 Iron-induced Local Complement Component 3 (C3) Up-regulation via Non-canonical Transforming Growth Factor (TGF)-β Signaling in the Retinal Pigment Epithelium. J Biol Chem Yafeng Li, Delu Song, Ying Song, Liangliang Zhao, Natalie Wolkow, John W Tobias, Wenchao Song, Joshua L Dunaief Site Directed Mutagenesis,High-Fidelity PCR
2015 Kinetic pathway of 40S ribosomal subunit recruitment to hepatitis C virus internal ribosome entry site Proc Natl Acad Sci U S A Gabriele Fuchs, Alexey N Petrov, Caleb D Marceau, Lauren M Popov, Jin Chen, Sen E O'Leary, Richard Wang, Jan E Carette, Peter Sarnow, Joseph D Puglisi SNAP Cell,SNAP Surface
2015 Identification of a Conserved Linear B-Cell Epitope of Streptococcus dysgalactiae GapC Protein by Screening Phage-Displayed Random Peptide Library PLoS One Zhang L., Zhang H., Fan Z., Zhou X., Yu L., Sun H., Wu Z., Yu Y., Song B., Ma J., Tong C., Wang X., Zhu Z., Cui Y.
2015 Insulin-like factor regulates neural induction through an IGF1 receptor-independent mechanism. Mol Biol Cell Haramoto Y., Takahashi S., Oshima T., Onuma Y., Ito Y., Asashima M.
2015 Involvement of the heterodimeric interface region of the nucleotide binding domain-2 (NBD2) in the CFTR quaternary structure and membrane stability Sci Rep Julien M., Chauvet S., Scheckenbach KE., Alfaidy N., Chanson M., Benharouga M.
2015 CRL4RBBP7 is required for efficient CENP-A deposition at centromeres J Cell Sci Julien Mouysset, Samuel Gilberto, Michelle G Meier, Fabienne Lampert, Mukta Belwal, Patrick Meraldi, Matthias Peter SNAP Cell
2015 Functional Characterization of Cucurbitadienol Synthase and Triterpene Glycosyltransferase Involved in Biosynthesis of Mogrosides from Siraitia grosvenorii. Plant Cell Physiol Longhai Dai, Can Liu, Yueming Zhu, Jiangsheng Zhang, Yan Men, Zeng Yan, Yuanxia Sun High-Fidelity PCR
2015 Depletion of CG-Specific Methylation in Mycoplasma hyorhinis Genomic DNA after Host Cell Invasion PLoS One Chernov AV., Reyes L., Peterson S., Strongin AY. Epigenetics,Bisulfite Conversion
2015 Development of a Rapid, Simple Method for Detecting Naegleria fowleri Visually in Water Samples by Loop-Mediated Isothermal Amplification (LAMP). PLoS One Aongart Mahittikorn, Hirotake Mori, Supaluk Popruk, Amonrattana Roobthaisong, Chantira Sutthikornchai, Khuanchai Koompapong, Sukhontha Siri, Yaowalark Sukthana, Duangporn Nacapunchai Isothermal Amplification
2015 Compounds targeting disulfide bond forming enzyme DsbB of Gram-negative bacteria Nature Chemical Biology Landeta, C., Blazyk, J.L., Hatahet, F., Meehan, B.M., Eser, M., Myrick, A., Bronstain, L., Minami, S., Arnold, H., Ke, N., Rubin, E.J., Furie, B.C., Furie, B., Beckwith, J., Dutton, R., Boyd, D.
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2015 Converting a Sulfenic Acid Reductase into a Disulfide Bond Isomerase Antioxid Redox Signal. Chatelle C, Kraemer S, Ren G, Chmura H, Marechal N, Boyd D, Roggemans C, Ke N, Riggs P, Bardwell J, Berkmen M.
2015 Developmental exposure to 2,3,7,8-tetrachlorodibenzo-p-dioxin alters DNA methyltransferase (dnmt) expression in zebrafish (Danio rerio) Toxicol Appl Pharmacol Aluru N, Kuo E, Helfrich LW, Karchner SI, Linney EA, Pais JE, Franks DG
2015 Efficient expression of full-length antibodies in the cytoplasm of engineered bacteria Nature Communications Robinson, M.-P., Ke, N., Lobstein, J., Peterson, C., Szkodny, A., Mansell, T.J., Tuckey, C., Riggs, P.D., Colussi, P.A., Noren, C.J., Taron, C.H., Delisa, M.P., Berkmen, M.
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2015 Dynamic caveolae exclude bulk membrane proteins and are required for sorting of excess glycosphingolipids Nat Commun Elena Shvets, Vassilis Bitsikas, Gillian Howard, Carsten Gram Hansen, Benjamin J Nichols SNAP Surface
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2015 Environmental marine pathogen isolation using mesocosm culture of sharpsnout seabream: striking genomic and morphological features of novel Endozoicomonas sp. Sci Rep. Katharios, P. et al.
2015 Genome Filtering for New DNA Biomarkers of Loa loa Infection Suitable for Loop-Mediated PLoS One Poole CB, Ettwiller L, Tanner NA, Evans TC Jr., Wanji S,Carlow CK
2015 Transition in sexual system and sex chromosome evolution in the tadpole shrimp Triops cancriformis. Heredity (Edinb). Mathers TC, Hammond RL, Jenner RA, Hänfling B, Atkins J, Gómez A.
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2015 Two new phragmotic ant species from Africa: morphology and next-generation sequencing solve a caste association problem in the genus Carebara Westwood. Zookeys. Fischer G, Azorsa F, Garcia FH, Mikheyev AS, Economo EP.
2015 The evolutionary history of the embiotocid surfperch radiation based on genome-wide RAD sequence data. Mol Phylogenet Evol. Longo G, Bernardi G.
2015 The use of museum specimens with high-throughput DNA sequen. J Hum Evol. Burrell AS, Disotell TR, Bergey CM.
2015 Thousands of RAD-seq Loci Fully Resolve the Phylogeny of the Highly Disjunct Arctic-Alpine Genus Diapensia (Diapensiaceae). PLoS One. Hou Y, Nowak MD, Mirré V, Bjorå CS, Brochmann C, Popp M.
2015 Using Next Generation RAD Sequencing to Isolate Multispecies Microsatellites for Pilosocereus (Cactaceae). PLoS One. Bonatelli IA, Carstens BC, Moraes EM.
2015 SNP-based genetic linkage map of tobacco (Nicotiana tabacum L.) using next-generation RAD sequencing. J Biol Res (Thessalon). Xiao B, Tan Y, Long N, Chen X, Tong Z, Dong Y, Li Y.
2015 High-Density Genetic Mapping with Interspecific Hybrids of Two Sea Urchins, Strongylocentrotus nudus and S. intermedius, by RAD Sequencing. PLoS One. Zhou Z, Liu S, Dong Y, Gao S, Chen Z, Jiang J, Yang A, Sun H, Guan X, Jiang B, Wang B.
2015 High-density interspecific genetic maps of kiwifruit and the identification of sex-specific markers. DNA Res. Zhang Q, Liu C, Liu Y, VanBuren R, Yao X, Zhong C, Huang H.
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2015 Contrasting genetic structure between mitochondrial and nuclear markers in the dengue fever mosquito from Rio de Janeiro: implications for vector control. Evol Appl. Rašić G, Schama R, Powell R, Maciel-de Freitas R, Endersby-Harshman NM, Filipović I, Sylvestre G, Máspero RC, Hoffmann AA.
2015 Evolution of stickleback in 50 years on earthquake-uplifted islands. Proc Natl Acad Sci U S A Lescak EA, Bassham SL, Catchen J, Gelmond O, Sherbick ML, von Hippel FA, Cresko WA.
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2015 RAD sequencing and genomic simulations resolve hybrid origins within North American Canis. Bio Lett. Rutledge LY, Devillard S, Boone JQ, Hohenlohe PA, White BN.
2015 Restriction Site-Associated DNA Sequencing (RAD-seq) Reveals an Extraordinary Number of Transitions among Gecko Sex-Determining Systems. Mol Biol Evol. Gamble T, Coryell J, Ezaz T, Lynch J, Scantlebury DP, Zarkower D.
2015 Sequence-tagged high-density genetic maps of Zoysia japonica provide insights into genome evolution in Chloridoideae. Plant J. Wang F, Singh R, Genovesi AD, Wai CM, Huang X, Chandra A, Yu Q.
2015 Leaf margin phenotype-specific restriction-site-associated DNA-derived markers for pineapple (Ananas comosus L.). Breed Sci. Urasaki N, Goeku S, Kaneshima R, Takamine T, Tarora K, Takeuchi M, Moromizato C, Yonamine K, Hosaka F, Terakami S, Matsumura H, Yamamoto T, Shoda M.
2015 Linkage disequilibrium network analysis (LDna) gives a global view of chromosomal inversions, local adaptation and geographic structure. Mol Ecol Resour. Kemppainen P, Knight CG, Sarma DK, Hlaing T, Prakash A, Maung Maung YN, Somboon P, Mahanta J, Walton C.
2015 Population genomic evidence for adaptive differentiation in Baltic Sea three-spined sticklebacks. BMCBiol. Guo B, DeFaveri J, Sotelo G, Nair A, Merilä J.
2015 Comparative Population Genomics of African Montane Forest Mammals Support Population Persistence across a Climatic Gradient and Quaternary Climatic Cycles. PLoS One. Demos TC, Kerbis Peterhans JC, Joseph TA, Robinson JD, Agwanda B, Hickerson MJ.
2015 Complete Genome Sequence of the freshwater colorless sulfur bacterium Beggiatoa leptomitiformis neotype strain D-402T Genome Announc. Fomenkov, A., Vincze, T., Grabovich, M.Y., Dubinina, G., Orlova, M., Belousova, E., Roberts, R.J.
2015 Complete Genome Sequence of Streptomyces sp. strain CCM_MD2014, isolated from topsoil in Woods Hole, Massachusetts Genome Announc. Mariita, R.M., Bhatnagar, S., Hanselmann, K., Hossain, M.J., Korlach, J., Boitano, M., Roberts, R.J., Liles, M.R., Moss, A.G., Leadbetter, J.R., Newman, D.K., Dawson, S.C.
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2015 Differential connectivity of splicing activators and repressors to the human spliceosome Genome Biol. Akerman, M., Fregoso, Ol., Das, S., Ruse, C., Jensen, M.A., Pappin, D.J., Zhang, M.Q., Krainer, A.R.
2015 Complete Genome Sequence of Curtobacterium sp. strain MR_MD2014, isolated from topsoil in Woods Hole, Massachusetts Genome Announc. Mariita, R.M., Bhatnagar, S., Hanselmann, K., Hossain, M.J., Korlach, J., Boitano, M., Roberts, R.J., Liles, M.R., Moss, A.G., Leadbetter, J.R., Newman, D.K., Dawson, S.C.
2015 Complete Genome Sequence Analysis of Bacillus Subtilis T30 Genome Announc. Xu, S-Y., Boitano, M., Clark, T.A., Vincze, T., Fomenkov, A., Kumar, S., Too, PH-M., Gonchar, D., Degtyarev, S.K. and Roberts, R.J.
2015 A Sensitive Approach to Map Genome-wide 5-Hydroxymethylcytosine and 5-Formylcytosine at Single-Base Resolution Mol. Cell Sun, Z., Dai, N., Borgaro, J.G., Quimby, A., Sun, D., Correa, I.R., Jr., Zheng, Y., Zhu, Z. and Guan, S.
2015 Single-molecule visualization of a formin-capping protein 'decision complex' at the actin filament barbed end Nat Commun. Bombardier, J.P., Eskin, J.A., Jaiswal, R., Correa, I.R., Jr., Xu, M.Q., Goode, B.L. and Gelles, J.
2015 Restriction Cascade Exponential Amplification (RCEA) assay with an attomolar detection limit: a novel, highly specific, isothermal alternative to qPCR Scientific Reports
2015 The roles of family B and d DNA polymerases in thermococcus species 9 degrees n okazaki fragment maturation J Biol Chem. Greenough, L., Kelman, Z. and Gardner, A.F.
2015 The mRNA decay factor PAT1 functions in a pathway including MAP kinase 4 and immune receptor SUMM2 Roux, M.E., Rasmussen, M.W., Palma, K., Lolle, S., Regue, A.M., Bethke, G., Glazebrook, J., Zhang, W., Sieburth, L., Larsen, M.R., Mundy, J., Petersen, M.
2015 Rescue of cells from apoptosis increases DNA repair in UVB exposed cells: implications for the DNA damage response Toxicol. Res. Karbaschi, Mahsa., Macip, Salvador., Mistry, Vilas., Abbas, Hussein H.K., Delinassios, George J., Evans, Mark D., Young, Antony R., Cooke, Marcus S.
2015 Expanding the MDx toolbox for filarial diagnosis and surveillance Trends Parasitol. Alhassan, A., Li, Z., Poole, C.B. and Carlow, C.K.S.
2015 Evaluation of a glycoengineered monoclonal antibody via LC-MS analysis in combination with multiple enzymatic digestion MAbs Liu R, Giddens J, McClung CM, Magnelli PE, Wang LX, Guthrie EP.
2015 Recognition and cleavage of 5-methylcytosine DNA by bacterial SRA-HNH proteins Nucleic Acids Res. Han, T., Yamada-Mabuchi, M., Zhao, G., Li, L., Liu, G., Oui, H-Y, Deng, Z., Zheng, Y. and He, X.
2015 Expression and purification of single-chain Type IV restriction enzyme Eco94GmrSD and determination of it substrate preference Scientific Reports He, X., Hull, V., Thomas, J.A., Fu, X., Gidwani, S., Gupta, Y.K., Black, L.W. and Xu, S-Y.
2016 Visualization of Periplasmic and Cytoplasmic Proteins with a Self-Labeling Protein Tag. J Bacteriol Ke, N., Landgraf, D., Paulsson, J. and Berkmen, M.
2016 Using glycosidases to remove, trim, or modify glycans on therapeutic proteins BioProcess International Guthrie, E.P., Magneilli, P.E.
2016 The Inhibitory Effect of Non-Substrate and Substrate DNA on the Ligation and Self-Adenylylation Reactions Catalyzed by T4 DNA Ligase. PLoS One Bauer, R.J., Evans, T.C. Jr. and Lohman, G.J.
2016 Sensitive Detection of Plasmodium vivax Using a High-Throughput, Colourimetric Loop Mediated Isothermal Amplification (HtLAMP) Platform: A Potential Novel Tool for Malaria Elimination. PLoS Negl Trop Dis Britton, S., Cheng, Q., Grigg, M.J., Poole, C.B., Pasay, C., William, T., Fornace, K., Anstey, N.M., Sutherland, C.J., Drakeley, C. and McCarthy, J.S.
2016 Sensitive and specific miRNA detection method using SplintR LigasePublication. Nucleic Acids Res. Jin, J., Vaud, S., Zhelkovsky, A.M., Posfai, J. and McReynolds, L.A.
2016 The Epigenomic Landscape of Prokaryotes. PLoS Genet. Blow, M.J., Clark, T.A., Daum, C.G., Deutschbauer, A.M., Fomenkov, A., Fries, R., Froula, J., Kang, D.D., Malmstrom, R.R., Morgan, R.D., Posfai, J., Singh, K., Visel, A., Wetmore, K., Zhao, Z., Rubin, E.M., Korlach, J., Pennacchio, L.A. and Roberts, R.J.
2016 Structure of Type IIL Restriction-Modification Enzyme MmeI in Complex with DNA Has Implications for Engineering New Specificities. PLoS Biol. Callahan, S.J., Luyten, Y.A., Gupta, Y.K., Wilson, G.G., Roberts, R.J., Morgan, R.D. and Aggarwal, A.K.
2016 Phenotypic and molecular analysis of the effect of 20-hydroxyecdysone on the human filarial parasite Brugia malayi. Int J Parasitol Mhashilkar, A.S., Adapa, S.R., Jiang, R.H., Williams, S.A., Zaky, W., Slatko, B.E., Luck, A.N., Moorhead, A.R. and Unnasch, T.R.
2016 A novel enrichment strategy reveals unprecedented number of novel transcription start sites at single base resolution in a model prokaryote and the gut microbiome. BMC Genomics Ettwiller, L., Buswell, J., Yigit, E. and Schildkraut, I
2016 A mix-and-read drop-based in vitro two-hybrid method for screening high-affinity peptide binders. Sci Rep Cui, N., Zhang, H., Schneider, N., Tao, Y., Asahara, H., Sun, Z., Cai, Y., Koehler, S.A., de Greef, T.F., Abbaspourrad, A., Weitz, D.A. and Chong, S.
2016 Absence of the filarial endosymbiont Wolbachia in seal heartworm (Acanthocheilonema spirocauda) but evidence of ancient lateral gene transfer. J Parasitol. Keroack, C.D., Wurster, J.I., Decker, C.G., Williams, K.M., Slatko, B.E., Foster, J.M. and Williams, S.A.
2016 Comprehensive Profiling of Glycosphingolipid Glycans Using a Novel Broad Specificity Endoglycoceramidase in a High-Throughput Workflow. Albrecht, S., Vainauskas, S., Stöckmann, H., McManus, C., Taron, C.H. and Rudd, P.M.
2016 Complete Genome Sequence of the Engineered Escherichia coli SHuffle Strains and Their Wild-Type Parents Genome Announc. Anton, B.P., Fomenkov, A., Raleigh, E.A. and Berkmen, M.
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2016 Genetically anchored fluorescent probes for subcellular specific imaging of hydrogen sulfide. Analyst Chen, J., Zhao, M., Jiang, X., Sizovs, A., Wang, M.C., Provost, C.R., Huang, J. and Wang, J.
2016 Complete Genome Sequence of a Strain of Azospirillum thiophilum Isolated from a Sulfide Spring. Genome Announc. Fomenkov, A., Vincze, T., Grabovich, M., Anton, B.P., Dubinina, G., Orlova, M., Belousova, E. and Roberts, R.J.
2016 Characterization of innate immunity genes in the parasitic nematode Brugia malayi Symbiosis Libro, S., Slatko, B.E. and Foster, J.M.
2016 AnnoTALE: bioinformatics tools for identification, annotation, and nomenclature of TALEs from Xanthomonas genomic sequences. Sci Rep. Grau, J., Reschke, M., Erkes, A., Streubel, J., Morgan, R.D., Wilson, G.G., Koebnik, R. and Boch, J.
2016 Complete Genome Sequence and Methylome Analysis of Aeromonas hydrophila Strain YL17, Isolated from a Compost Pile. Genome Announc. Lim, Y.L., Roberts, R.J., Ee, R., Yin, W.F. and Chan, K.G.
2016 Complete Genome and Methylome Sequences of Salmonella enterica subsp. enterica Serovar Panama (ATCC 7378) and Salmonella enterica subsp. enterica Serovar Sloterdijk (ATCC 15791). Genome Announc. Yao, K., Muruvanda, T., Roberts, R.J., Payne, J., Allard, M.W. and Hoffmann, M.
2016 Host-Associated Genomic Features of the Novel Uncultured Intracellular Pathogen Ca. Ichthyocystis Revealed by Direct Sequencing of Epitheliocysts. Genome Biol. Evol. Qi, W. et al.
2016 Epidemiological typing of Neisseria gonorrhoeae and detection of markers associated with antimicrobial resistance directly from urine samples using next generation sequencing Sex. Transm. Infect Graham, R.M.A. et al.
2016 The Microbiome of Aseptically Collected Human Breast Tissue in Benign and Malignant Disease Sci Rep. Hieken, T.J. et al.
2016 omplete Genome Sequence and Methylome Analysis of Bacillus globigii ATCC 49760. Genome Announc. Morgan, R.D.
2016 Metagenomic analysis of bloodstream infections in patients with acute leukemia and therapy induced neutropenia. Sci Rep. Gyarmati, P. et al.
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2016 Genomic study of the Ket: a PaleoEskimo-related ethnic group with significant ancient North Eurasian ancestry. Sci Rep. Flegontov, P. et al.
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2016 Identification of Ecdysone Hormone Receptor Agonists as a Therapeutic Approach for Treating Filarial Infections. PLoS Negl Trop Dis. Mhashilkar, A.S., Vankayala, S.L., Liu, C., Kearns, F., Mehrotra, P., Tzertzinis, G., Palli, S.R., Woodcock, H.L. and Unnaschm, T.R.
2016 Detecting DNA Methylation using the Oxford Nanopore Technologies MinION sequencer bioRxiv Simpson, J.T. et al.
2016 Emerging pathogens of gilthead seabream: characterisation and genomic analysis of novel intracellular β-proteobacteria. ISME J. Seth-Smith, M.B.P. et al.
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2016 Jmjd2/Kdm4 demethylases are required for expression of Il3ra and survival of acute myeloid leukemia cells Genes & Dev Agger, K. et al.
2016 Reminder to deposit DNA sequences Science Blaxter, M., Danchin, A., Savakis, B., Fukami-Kobayashi, K., Kurokawa, K., Sugano, S., Roberts, R.J., Salzberg, S.L. and Wu, C.I.
2016 Expression and purification of the modification-dependent restriction enzyme BisI and its homologous enzymes Sci Rep Xu, S.Y., Klein, P., Degtyarev, S.K.h. and Roberts, R.J.
2016 Advanced uracil DNA glycosylase-supplemented real-time reverse transcription loop-mediated isothermal amplification (UDG-rRT-LAMP) method for universal and specific detection of Tembusu virus Scientific Reports Tang Y, Chen H, Diao Y
2016 Folate-/FAD-dependent tRNA methyltransferase from Thermus thermophilus regulates other modifications in tRNA at low temperatures. Genes Cells Yamagami, R., Tomikawa, C., Shigi, N., Kazayama, A., Asai, S.I., Takuma, H., Hirata, A., Fourmy, D., Asahara, H., Watanabe, K., Yoshizawa, S. and Hori, H.
2016 Taxonomer: an interactive metagenomics analysis portal for universal pathogen detection and host mRNA expression profiling Genome Biology Flygare, S. et al.
2016 Increasing Genome Sampling and Improving SNP Genotyping for Genotyping-by-Sequencing with New Combinations of Restriction Enzymes G3 Fu YB, Peterson G. W., Dong Y Restriction Enzyme Digestion,Restriction Enzyme Digestion
2016 A DsbA-Deficient Periplasm Enables Functional Display of a Protein with Redox-Sensitive Folding on M13 Phage. Biochemistry Chen, M., Samuelson, J.C.
2016 Comparative Methylome Analysis of the Occasional Ruminant Respiratory Pathogen Bibersteinia trehalosi. PLoS One Anton, B.P., Harhay, G.P., Smith, T.P., Blom, J. and Roberts, R.J.
2016 Culture-independent genomic characterisation of Candidatus Chlamydia sanzinia, a novel uncultivated bacterium infecting snakes. BMC Genomics Taylor-Brown, A. et al.
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2014 A continuous-exchange cell-free protein synthesis system based on extracts from cultured insect cells PLoS One Stech M, Quast RB, Sachse R, Schulze C, Wüstenhagen DA, Kubick S Glycobiology
2014 A Modified Janus Cassette (Sweet Janus) to Improve Allelic Replacement Efficiency by High-Stringency Negative Selection in Streptococcus pneumoniae PLoS One Li Y, Thompson CM, Lipsitch M Gibson Assembly®
2014 A Modular Plasmid Assembly Kit for Multigene Expression, Gene Silencing and Silencing Rescue in Plants PLoS One Binder A, Lambert J, Morbitzer R, Popp C, Ott T, Lahaye T, Parniske M DNA Assembly and Cloning,Golden Gate Assembly
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2014 A trimeric lipoprotein assists in trimeric autotransporter biogenesis in enterobacteria J Biol Chem Grin I, Hartmann MD, Sauer G, Hernandez Alvarez B, Schütz M, Wagner S, Madlung J, Macek B, Felipe-Lopez A, Hensel M, Lupas A, Linke D Phage Display
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2014 An RNA aptamer that specifically binds to the glycosylated hemagglutinin of avian influenza virus and suppresses viral infection in cells PLoS One Kwon HM, Lee KH, Han BW, Han MR, Kim DH, Kim DE Glycobiology
2014 A robust TALENs system for highly efficient mammalian genome editing Sci Rep Feng Y, Zhang S, Huang X DNA Assembly and Cloning,Golden Gate Assembly
2014 A restriction enzyme-powered autonomous DNA walking machine: its application for a highly sensitive electrochemiluminescence assay of DNA Nanoscale Ying Chen, Yun Xiang, Ruo Yuan, Yaqin Chai
2014 A semi-synthetic organism with an expanded genetic alphabet Nature Malyshev, D.A., Dhami, K., Lavergne, T., chen, T., Dai, N., Foster, J.M., Correa Jr., I.R. and Romesberg, F.E.
2014 A simple and efficient strategy for the de novo construction of greater-than-genome-length hepatitis B virus replicons J Virol Methods Wang XJ, Zhang XJ, Hu W, Zhang TY, Wang SQ
2014 Biomimetic Magnetite Formation From Biocombinatorial Approaches to Mineralization Effects Langmuir Baumgartner J, Carillo MA, Eckes KM, Werner P, Faivre D. Phage Display
2014 Characterization of cleavage intermediate and star sites of RM.Tth111II. Sci Rep Zhu, Z., Guan, S., Robinson, D., El Fezzazi, H., Quimby, A. and Xu, S-Y.
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2014 Anti-Wolbachia drug discovery and development: safe macrofilaricides for onchocerciasis and lymphatic filariasis Parasitology/FirstView Article Taylor, M.J., Hoerauf, A., Townson, S., Slatko, B.E. and Ward, S.A.
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2014 Sequencing of captive target transcripts identifies the network of regulated genes and functions of primate-specific miR-522 Cell Rep Tan SM, Kirchner R, Jin J, Hofmann O, McReynolds L, Hide W, Lieberman J
2014 Serine and proline-rich ligands enriched via phage-display technology show preferential binding to BCR/ABL expressing cells Hematol Oncol Stem Cell Ther Shires K, Shankland I, Mowla S, Njikan S, Jaymacker J, Novitzky N Phage Display
2014 Spontaneous in vitro senescence of glioma cells confirmed by an antibody against IDH1R132H Anticancer Res Stoczynska-Fidelus E, Och W, Rieske P, Bienkowski M, Banaszczyk M, Winiecka-Klimek M, Zieba J, Janik K, Rosiak K, Treda C, Stawski R, Radomiak-Zaluska A, Piaskowski S
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2014 RNA-RNA Interactions Enable Specific Targeting of Noncoding RNAs to Nascent Pre-mRNAs and Chromatin Sites Cell Jesse M. Engreitz, Klara Sirokman, Patrick McDonel, Alexander A. Shishkin, Christine Surka, Pamela Russell, Sharon R. Grossman, Amy Y. Chow, Mitchell Guttman, and Eric S. Lander
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2014 Structure of the Trehalose-6-phosphate Phosphatase from Brugia malayi Reveals Key Design Principles for Anthelmintic Drugs PLoS Pathog Farelli JD, Galvin BD, Li Z, Liu C, Aono M, Garland M, Hallett OE, Causey TB, Ali-Reynolds A, Saltzberg DJ, Carlow CK, Dunaway-Mariano D, Allen KN
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2014 The ambrosia symbiosis is specific in some species and promiscuous in others: evidence from community pyrosequencing. ISME J Martin Kostovcik, Craig C Bateman, Miroslav Kolarik, Lukasz L Stelinski, Bjarte H Jordal, Jiri Hulcr High-Fidelity PCR
2014 The complex methylome of the human gastric pathogen Helicobacter pylori Nucleic Acids Res Krebes J, Morgan RD, Bunk B, Spröer C, Luong K, Parusel R, Anton BP, König C, Josenhans C, Overmann J, Roberts RJ, Korlach J, Suerbaum S
2014 The CLO3403/CLO3404 Two-Component System of Clostridium botulinum E1 Beluga Is Important for Cold Shock Response and Growth at Low Temperatures Appl Environ Microbiol Mascher G, Derman Y, Kirk DG, Palonen E, Lindström M, Korkeala H
2014 Strand Invasion Based Amplification (SIBA®): A Novel Isothermal DNA Amplification Technology Demonstrating High Specificity and Sensitivity for a Single Molecule of Target Analyte PLoS One Hoser MJ, Mansukoski HK, Morrical SW, Eboigbodin KE
2014 Stable cell surface expression of GPI-anchored proteins, but not intracellular transport, depends on their fatty acid structure Traffic Janesh, N. Correa, I.R., Jr. and Watanabe, R.
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2014 Structure of 5-hydroxymethylcytosine-specific restriction enzyme AbaSI in complex with DNA Nucleic Acids Res Horton JR, Borgaro JG, Griggs RM, Quimby A, Guan S, Zhang X, Wilson GG, Zheng Y, Zhu Z, Cheng X
2014 Structure and mutagenesis of the DNA modification-dependent restriction endonuclease AspBHI Sci Rep Horton JR, Nugent RL, Li A, Mabuchi MY, Fomenkov A, Cohen-Karni D, Griggs RM, Zhang X, Wilson GG, Zheng Y, Xu SY, Cheng X
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2014 Mutations in four glycosyl hydrolases reveal a highly coordinated pathway for rhodopsin biosynthesis and N-glycan trimming in Drosophila melanogaster PLoS Genet Rosenbaum EE, Vasiljevic E, Brehm KS, Colley NJ Glycobiology
2014 Neurospora crassa Female Development Requires the PACC and Other Signal Transduction Pathways, Transcription Factors, Chromatin Remodeling, Cell-To-Cell Fusion, and Autophagy PLoS One Chinnici JL, Fu C, Caccamise LM, Arnold JW, Free SJ Gibson Assembly®
2014 Objective: biochemical function Front Genet Anton BP, Kasif S, Roberts RJ, Steffen M
2014 Ordering of mutations in preinvasive disease stages of esophageal carcinogenesis Nat Genet Weaver JM, Ross-Innes CS, Shannon N, Lynch AG, Forshew T, Barbera M, Murtaza M, Ong CA, Lao-Sirieix P, Dunning MJ, Smith L, Smith ML, Anderson CL, Carvalho B, O'Donovan M, Underwood TJ, May AP, Grehan N, Hardwick R, Davies J, Oloumi A, Aparicio S, Caldas C, Eldridge MD, Edwards PA, Rosenfeld N, Tavaré S, Fitzgerald RC; OCCAMS Consortium
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2014 Molecular evolution of the Yap/Yorkie proto-oncogene and elucidation of its core transcriptional program Mol Biol Evol Ikmi A, Gaertner B, Seidel C, Srivastava M, Zeitlinger J, Gibson MC Gibson Assembly®
2014 Multiplex genome engineering in human cells using all-in-one CRISPR/Cas9 vector system Sci Rep Sakuma T, Nishikawa A, Kume S, Chayama K, Yamamoto T Golden Gate Assembly
2014 Molecular evolution of the Yap/Yorkie proto-oncogene and elucidation of its core transcriptional program Mol Biol Evol Ikmi A, Gaertner B, Seidel C, Srivastava M, Zeitlinger J, Gibson MC Gibson Assembly®
2014 Procerain B, a cysteine protease from Calotropis procera, requires N-terminus pro-region for activity: cDNA cloning and expression with pro-sequence. Protein Expr Purif Vidhyadhar Nandana, Sushant Singh, Abhay Narayan Singh, Vikash Kumar Dubey High-Fidelity PCR
2014 Probing homodimer formation of epidermal growth factor receptor by selective crosslinking Eur J Med Chem Sun X, Dusserre-Bresson F, Baker B, Zhang A, Xu P, Fibbe C, Noren CJ, Corrêa IR Jr, Xu MQ
2014 Production of Disulfide-Bonded Proteins in Escherichia coli Curr Protoc Mol Biol Ke N, Berkmen M
2014 Protein-protein interactions leading to the recruitment of the host DNA sliding clamp by the hyperthermophilic archaeal virus SIRV2 J Virol Gardner AF, Bell SD, White MF, Prangishvili D, Krupovic M
2014 Prospective identification of parasitic sequences in phage display screens Nucleic Acids Res Matochko WL, Cory Li S, Tang SK, Derda R Phage Display
2014 p19-mediated enrichment and detection of siRNAs Methods Mol Biol Jin J, McReynolds LA, Gullerova M
2014 Overview of cell-free protein synthesis: historic landmarks, commercial systems, and expanding applications Curr Protoc Mol Biol Chong S
2014 PCR amplification of a triple-repeat genetic target directly from whole blood in 15 minutes as a proof-of-principle PCR study for direct sample analysis for a clinically relevant target BMC Med Genet Connelly CM1, Porter LR2, TerMaat JR
2014 Polynucleotide 3'-terminal phosphate modifications by RNA and DNA ligases Journal of Biological Chemistry Alexander M. Zhelkovsky and Larry A. McReynolds
2014 Phosphorylation decreases ubiquitylation of the thiazide-sensitive cotransporter NCC and subsequent clathrin-mediated endocytosis J Biol Chem Rosenbaek LL, Kortenoeven ML, Aroankins TS, Fenton RA Glycobiology
2014 The N-terminal domain modulates α-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA) receptor desensitization J Biol Chem Möykkynen T, Coleman SK, Semenov A, Keinänen K Glycobiology
2014 Transient accumulation of 5-carboxylcytosine indicates involvement of active demethylation in lineage specification of neural stem cells Cell Rep Wheldon LM, Abakir A, Ferjentsik Z, Dudnakova T, Strohbuecker S, Christie D, Dai N, Guan S, Foster JM, Corrêa IR Jr, Loose M, Dixon JE, Sottile V, Johnson AD, Ruzov A
2014 Transcriptomic analysis of carboxylic acid challenge in Escherichia coli: beyond membrane damage PLoS One Royce LA, Boggess E, Fu Y, Liu P, Shanks JV, Dickerson J, Jarboe LR Gibson Assembly®
2014 Trypanosome MKT1 and the RNA-binding protein ZC3H11: interactions and potential roles in post-transcriptional regulatory networks Nucleic Acids Res Singh A, Minia I, Droll D, Fadda A, Clayton C, Erben E
2014 Type I restriction enzymes and their relatives Nucleic Acids Res Loenen WA, Dryden DT, Raleigh EA, Wilson GG
2014 Tuning the electrical properties of the heart by differential trafficking of KATP ion channel complexes J Cell Sci Arakel EC, Brandenburg S, Uchida K, Zhang H, Lin YW, Kohl T, Schrul B, Sulkin MS, Efimov IR, Nichols CG, Lehnart SE, Schwappach B Glycobiology
2014 The Serine-Threonine Protein Kinase PAK4 Is Dispensable in Zebrafish: Identification of a Morpholino-Generated Pseudophenotype PLoS One Law SH, Sargent TD Gibson Assembly®
2014 The other face of restriction: modification-dependent enzymes. Nucleic Acids Res Loenen, W.A., Raleigh, E.A. Restriction Enzyme Digestion,Restriction Enzyme Digestion
2014 The uric acid transporter SLC2A9 is a direct target gene of the tumor suppressor p53 contributing to antioxidant defense Oncogene Itahana Y, Han R, Barbier S, Lei Z, Rozen S, Itahana K Glycobiology
2014 Time-resolved fluorescence of 2-aminopurine in DNA duplexes in the presence of the EcoP15I Type III restriction-modification enzyme Biochem Biophys Res Commun Ma L, Wu X, Wilson GG, Jones AC, Dryden DT
2014 Therapeutic epitopes of Leptospira LipL32 protein and their characteristics Protein Eng Des Sel Maneewatch S, Adisakwattana P, Chaisri U, Saengjaruk P, Srimanote P, Thanongsaksrikul J, Sakolvaree Y, Poungpan P, Chaicumpa W Phage Display
2014 Wilms tumor protein recognizes 5-carboxylcytosine within a specific DNA sequence Genes Dev Hashimoto H, Olanrewaju YO, Zheng Y, Wilson GG, Zhang X, Cheng X
2014 Whole-genome haplotyping using long reads and statistical methods. Nature Biotechnology Kuleshov, K. et al.
2014 Wolbachia endosymbionts and human disease control Mol. Biochem. Parasitol. Slatko, B. E., Luck, A. N., Dobson, S. L. and Foster, J. M.
2014 REBASE - A database for DNA restriction and modification: enzymes, genes and genomes Nucleic Acids Research, Advance Access Roberts, R.J., Vincze, T., Posfai, J., Macelis, D.
2014 Type I restriction enzymes and their relatives Nucleic Acids Research Wil A. M. Loenen, David T. F. Dryden, Elisabeth A. Raleigh, Geoffrey G. Wilson
2014 Type II Cadherins Guide Assembly of a Direction-Selective Retinal Circuit. Cell Xin Duan, Arjun Krishnaswamy, Irina De la Huerta, Joshua R Sanes High-Fidelity PCR
2014 Type II restriction endonucleases-a historical perspective and more Nucleic Acids Res Pingoud A, Wilson GG, Wende W
2014 Validation of microinjection methods for generating knockout mice by CRISPR/Cas-mediated genome engineering Sci Rep Horii T, Arai Y, Yamazaki M, Morita S, Kimura M, Itoh M, Abe Y, Hatada I Gibson Assembly®
2014 Ubiquity and diversity of human-associated demodex mites. PLoS One Megan S Thoemmes, Daniel J Fergus, Julie Urban, Michelle Trautwein, Robert R Dunn Routine PCR
2014 Co-evolution between an Endosymbiont and Its Nematode Host: Wolbachia Asymmetric Posterior Localization and AP Polarity Establishment PLoS Negl Trop Dis Landmann F, Foster JM, Michalski ML, Slatko BE, Sullivan W
2014 Clathrin-independent pathways do not contribute significantly to endocytic flux Elife Bitsikas V, Corrêa IR, Nichols BJ
2014 Cofactor-Independent Phosphoglycerate Mutase from Nematodes Has Limited Druggability, as Revealed by Two High-Throughput Screens PLoS Negl Trop Dis. Crowther, G.J., Booker, M.L., He, M., Li, T., Raverdy, S., Novelli, J.F., He, P., Dale, N.R.G., Fife, A.M., Barker, R.H., Jr., Kramer, M.L., Van Voorhis, W.C., Carlow, C.K.S. and Wang, M-W.
2014 Concurrent transcriptional profiling of Dirofilaria immitis and its Wolbachia endosymbiont throughout the nematode life cycle reveals coordinated gene expression BMC Genomics Luck, A.N., Evans, C.C., Foster, J.M., et al.
2014 Comparison of Subtypes of Listeria monocytogenes Isolates from Naturally Contaminated Watershed Samples with and without a Selective Secondary Enrichment PLoS ONE Gorski L, Walker S, Liang AS, Nguyen KM, Govoni J, et al.
2014 Characterization of Family D DNA polymerase from Thermococcus sp. 9°N Extremophiles Greenough L, Menin JF, Desai NS, Kelman Z, Gardner AF
2014 Consequences of the disease-related L78R mutation for dimerization and activity of STAT3 J Cell Sci Domoszlai T, Martincuks A, Fahrenkamp D, Schmitz-Van de Leur H, Küster A, Müller-Newen G Cellular Analysis,SNAP Cell
2014 Identification and characterization of mutant clones with enhanced propagation rates from phage-displayed peptide libraries Anal Biochem Nguyen KT, Adamkiewicz MA, Hebert LE, Zygiel EM, Boyle HR, Martone CM, Meléndez-Ríos CB, Noren KA, Noren CJ, Hall MF
2014 Identification and Characterization of a Suite of Tumor Targeting Peptides for Non-Small Cell Lung Cancer Sci Rep McGuire MJ, Gray BP, Li S, Cupka D, Byers LA, Wu L, Rezaie S, Liu YH, Pattisapu N, Issac J, Oyama T, Diao L, Heymach JV, Xie XJ, Minna JD, Brown KC Phage Display
2014 Identification and characterization of mutant clones with enhanced propagation rates from phage-displayed peptide libraries Anal Biochem Nguyen KT, Adamkiewicz MA, Hebert LE, Zygiel EM, Boyle HR, Martone CM, Meléndez-Ríos CB, Noren KA, Noren CJ, Hall MF Phage Display
2014 Impact of a transposon insertion in phzF2 on the specialized metabolite production and interkingdom J Bacteriol Phelan VV, Moree WJ, Aguilar J, Cornett DS, Koumoutsi A, Noble SM, Pogliano K, Guerrero CA, Dorrestein PC Gibson Assembly®
2014 Highlights of the DNA cutters: a short history of the restriction enzymes Nucleic Acids Res Loenen WA, Dryden DT, Raleigh EA, Wilson GG, Murray NE
2014 Identification of restriction-modification systems of Bifidobacterium animalis subsp. lactis CNCM I-2494 by SMRT sequencing and associated methylome analysis PLoS One O'Connell Motherway M, Watson D, Bottacini F, Clark TA, Roberts RJ, Korlach J, Garault P, Chervaux C, van Hylckama Vlieg JE, Smokvina T, van Sinderen D
2014 Genomics of CpG methylation in developing and developed zebrafish G3 (Bethesda) McGaughey DM, Abaan HO, Miller RM, Kropp PA, Brody LC
2014 Identification and Characterization of a Proteolytically Primed Form of the Murine Coronavirus Spike Proteins after Fusion with the Target Cell J Virol Wicht O, Burkard C, de Haan CA, van Kuppeveld FJ, Rottier PJ, Bosch BJ Glycobiology
2014 Identification and Biosynthesis of a Novel Xanthomonadin-Dialkylresorcinol-Hybrid from Azoarcus sp. BH72 PLoS One Schöner TA, Fuchs SW, Reinhold-Hurek B, Bode HB Gibson Assembly®
2014 Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types. Science Jaitin, DA., Kenigsberg, E., Keren-Shaul, H., Elefant, N., Paul, F., Zaretsky, I., Mildner, A., Cohen, N., Jung, S., Tanay, A. and Amit, I.
2014 MBD4 cooperates with DNMT1 to mediate methyl-DNA repression and protects mammalian cells from oxidative stress Epigenetics Laget S, Miotto B, Chin HG, Estève PO, Roberts RJ, Pradhan S, Defossez PA
2014 Loop-mediated isothermal amplification for detection of nucleic acids Curr Protoc Mol Biol Tanner NA, Evans TC Jr. Isothermal Amplification
2014 Methyllysine reader plant homeodomain (PHD) finger protein 20-like 1 (PHF20L1) antagonizes DNA (cytosine-5) methyltransferase 1 (DNMT1) proteasomal degradation J Biol Chem Estève PO, Terragni J, Deepti K, Chin HG, Dai N, Espejo A, Corrêa IR Jr, Bedford MT, Pradhan S
2014 Insights into the initiation of JC virus DNA replication derived from the crystal structure of the T-antigen origin binding domain PLoS Pathog Meinke G, Phelan PJ, Kalekar R, Shin J, Archambault J, Bohm A, Bullock PA Gibson Assembly®
2014 Mediated enrichment of siRNAs Methods in Molecular Biology Jin J., McReynolds L.A. and Gullerova M.
2014 Insights into bacterial CO2 metabolism revealed by the characterization of four carbonic anhydrases in Ralstonia eutropha H16 AMB Express Gai CS, Lu J, Brigham CJ, Bernardi AC, Sinskey AJ Gibson Assembly®
2014 Integration of growth and patterning during vascular tissue formation in Arabidopsis Science Bert De Rybel, Milad Adibi, Alice S. Breda, Jos R. Wendrich, Margot E. Smit, Ondej Novk, Nobutoshi Yamaguchi, Saiko Yoshida, Gert Van Isterdael, Joakim Palovaara, Bart Nijsse, Mark V. Boekschoten, Guido Hooiveld, Tom Beeckman, Doris Wagner, Karin Ljung, Christian Fleck, Dolf Weijers High-Fidelity PCR
2014 Live-cell reporters for fluorescence imaging Curr Opin Chem Biol Corrêa IR Jr.
2014 Intranasal mRNA nanoparticle vaccination induces prophylactic and therapeutic anti-tumor immunity Sci Rep Phua KK, Staats HF, Leong KW, Nair SK
2014 Engineering hydrogen gas production from formate in a hyperthermophile by heterologous production of an 18-subunit membrane-bound complex J Biol Chem Lipscomb GL, Schut GJ, Thorgersen MP, Nixon WJ, Kelly RM, Adams MW Gibson Assembly®
2014 Engineering Bacterial Transcription Regulation To Create a Synthetic in Vitro Two-Hybrid System for Protein Interaction Assays J Am Chem Soc Zhou Y, Asahara H, Schneider N, Dranchak P, Inglese J, Chong S
2014 Engineering nicking enzymes that preferentially nick 5-methylcytosine-modified DNA Nucleic Acids Res Gutjahr A, Xu SY Gibson Assembly®
2014 Epigenetic silencing of apoptosis-inducing gene expression can be efficiently overcome by combined SAHA and TRAIL treatment in uterine sarcoma cells PLoS One Fröhlich LF, Mrakovcic M, Smole C, Lahiri P, Zatloukal K
2014 Enhanced gene disruption by programmable nucleases delivered by a minicircle vector. Gene Ther A-Bk Dad, S Ramakrishna, M Song, H Kim Genome Editing
2014 DevR (DosR) mimetic peptides impair transcriptional regulation and survival of Mycobacterium tuberculosis under hypoxia by inhibiting the autokinase activity of DevS sensor kinase BMC Microbiol Kaur K, Taneja NK, Dhingra S, Tyagi JS Phage Display
2014 Development of VHH Antibodies against Dengue Virus Type 2 NS1 and Comparison with Monoclonal Antibodies for Use in Immunological Diagnosis PLoS One Fatima A, Wang H, Kang K, Xia L, Wang Y, Ye W, Wang J, Wang X. Phage Display
2014 Diversity and Expression of MicroRNAs in the Filarial Parasite, Brugia malayi. PLoS One Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA.
2014 Efficient DNA ligation in DNA–RNA hybrid helices by Chlorella virus DNA ligase Nucleic Acids Research Gregory J. S. Lohman, Yinhua Zhang, Alexander M. Zhelkovsky, Eric J. Cantor, Thomas C. Evans Jr.
2014 Elimination of inter-domain interactions increases the cleavage fidelity of the restriction endonuclease DraIII Protein Cell Zhuo W, Lai X, Zhang L, Chan SH, Li F, Zhu Z, Yang M, Sun D
2014 G-CSF does not influence C2C12 myogenesis despite receptor expression in healthy and dystrophic skeletal muscle Front Physiol Wright CR, Brown EL, Della-Gatta PA, Ward AC, Lynch GS, Russell AP Glycobiology
2014 Fusion of catalytically inactive Cas9 to FokI nuclease improves the specificity of genome modification Nat Biotechnol Guilinger JP, Thompson DB, Liu DR Gibson Assembly®
2014 Generation of West Nile virus infectious clones containing amino acid insertions between capsid and capsid anchor Viruses Vandergaast R, Hoover LI, Zheng K, Fredericksen BL Gibson Assembly®
2014 Gene and protein sequence optimization for high-level production of fully active and aglycosylated lysostaphin in Pichia pastoris Appl Environ Microbiol Zhao H, Blazanovic K, Choi Y, Bailey-Kellogg C, Griswold KE Glycobiology
2014 Evaluation of fluorophores to label SNAP-tag fused proteins for multicolor single-molecule tracking microscopy in live cells Bosch PJ, Corrêa IR Jr, Sonntag MH, Ibach J, Brunsveld L, Kanger JS, Subramaniam V
2014 Establishment of a CpG island microarray for analyses of genome-wide DNA methylation in Chinese hamster ovary cells Appl Microbiol Biotechnol Wippermann A, Klausing S, Rupp O, Albaum SP, Büntemeyer H, Noll T, Hoffrogge R
2014 Evolution, mechanisms, and applications of intein-mediated protein splicing J Biol Chem Perler FB, Allewell NM
2014 Functional characterization improves associations between rare non-synonymous variants in CHRNB4 and smoking behavior PLoS One Haller G, Li P, Esch C, Hsu S, Goate AM, Steinbach JH Glycobiology
2014 Expanded genetic codes in next generation sequencing enable decontamination and mitochondrial enrichment PLoS One McKernan KJ, Spangler J, Zhang L, Tadigotla V, McLaughlin S, Warner J, Zare A, Boles RG
2014 Proteomic identification of mammalian cell-surface derived glycosylphosphatidylinositol anchored proteins through selective glycan enrichment Proteomics Cortes LK, Vainauskas S, Dai N, McClung CM, Shah M, Benner JS, Jr IR, VerBerkmoes NC, Taron CH
2014 Genome and Metagenome Sequencing: Using the Human Methyl-Binding Domain to Partition Genomic DNA Derived from Plant Tissues. Applications in Plant Sciences Erbay Yigit, David I. Hernandez, Joshua T. Trujillo, Eileen Dimalanta, and C. Donovan Bailey
2014 Absense of Wolbachia endobacteria in the human parasitic nematode Dracunculus medinensis and two related Dracunculus species infecting wildlife Parasit Vectors Foster, J.M., Landmann, F., Ford, L., Johnston, K.L., Elsasser, S.C., Schulte-Hostedde, A.I., Taylor, M.J., Slatko, B.E.
2014 A Target Repurposing Approach Identifies N-myristoyltransferase as a New Candidate Drug Target in Filarial Nematodes PLoS Negl Trop Dis. Galvin, B.D., Li, Z., Villemaine, E., Poole, C.B., Chapman, M.S., Pollastri, M.P., Wyatt, P.G., Carlow, C.K.
2014 Complementation of essential yeast GPI mannosyltransferase mutations suggests a novel specificity for certain Trypanosoma and Plasmodium PigB proteins PLoS One Cortes, L.K., Scarcelli, J.J., Taron, C.H.
2014 Colonization state influences the hemocyte proteome in a beneficial squid-Vibrio symbiosis Mol Cell Proteomics Schleicher, T.R., VerBerkmoes, N.C., Shah, M., Nyholm, S.V.
2014 A simple isothermal DNA amplification method to screen black flies for Onchocerca Volvulus infection PLoS One Alhassan, A., Makepeace, B.L., LaCourse, E.J., Osei-Atweneboana, M.Y., Carlow, C.K.S.
2014 Complete genome sequence of a multidrug resistant Salmonella enterica serovar Typhimurium var. 5-strain isolated from chicken breast Genome Announc. Hoffmann, M., Muruvanda, T., Allard, M.W., Korlach, J., Roberts, R.J., Timme, R., Payne, J., McDermott, P.F., Evans, P., Meng, J., Brown, E.W., Zhao, S.
2014 The other face of restriction: modification-dependent enzymes Nucleic Acids Res. Loenen, W.A.M. and Raleigh, E.A.
2014 Science for the suffering Scientific American World View Slatko, B.
2014 The role of an asymmetrically inherited endosymbiont in robust establishment of host embryonic polarity PLoS Negl. Trop. Dis Landmann, F., Foster, J.M., Michalski, S., Slatko, B., Sullivan, W.
2014 Traceless splicing enabled by substrate induced activation of the Nostoc punctiforme Npu DnaE intein after mutation of a catalytic cystein to serine J Mol Biol. Cheriyan, M., Chan, S-H., Perler, F.
2014 Gill bacteria enable a novel digestive strategy in a wood-feeding mollusk Proc Natl Acad Sci. O'Connor, R.M., Fung, J.M., Sharp, K.H., Benner, J.S., McClung, C., Cushing, S., Lamkin, E.R., Fomenkov, A.I., Henrissat, B., Londer, Y.Y., et al.
2014 DNA polymerases in biotechnology Front Microbiol. Gardner, A.F. and Kelman, Z.
2014 Notch signaling genes: myogenic DNA hypomethylation and 5-hydroxymethylcytosine Epigenetics Terragni, J., Zhang, G., Sun, Z., Pradhan, S., Song, L., Crawford, G.E., Lacey, M., Ehrlich, M.
2014 Mammalian epigenetic mechanisms IUBMB Life Zhang, G. and Pradhan, S.
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1993 Brugia pahangi and Brugia malayi: A Surface-Associated Glycoprotein (gp15/400) is Composed of Multiple Tandemly Repeated Units and Processed from a 400-kDa Precursor1. Exp.Parasitol. Tweedie, S., Paxton.W, A., Ingram, L., Maizels, R.M., McReynolds, L.A., and Selkirk, M.E.
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2010 A novel melanoma-targeting peptide screened by phage display exhibits antitumor activity J. Mol. Med. Matsuo, A.L. et al.
2010 A set of aspartyl protease-deficient strains for improved expression of heterologous proteins in Kluyveromyces lactis. FEMS Yeast Res. Ganatra, M.B., Vainauskus, S., Hong, J.M., Taylor, T.E., Denson, J.P., Esposito, D., Read, J.D., Schmeisser, H., Zoon, K.C., Hartley, J.L.and Taron, C.H.
2010 A human PMS2 homologue from Aquifex aeolicus stimulates an ATP-dependent DNA helicase. J Biol.Chem Mauris, J.and Evans, T.C., Jr.
2010 A novel peptide specifically targeting the vasculature of orthotopic colorectal cancer for imaging detection and drug delivery J. Control Release Li, Z.J. et. al.
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2010 A functional NR4A nuclear receptor DNA-binding domain is required for organ development in Caenorhabditis elegans. Genesis Heard, M., Maina, C.V., Morehead, B.E., Hoener, M.C., Nguyen, T.Q., Williams, C.C., Rowan, B.G.and Gissendanner, C.R.
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2010 Potential amyloid plaque-specific peptides for the diagnosis of Alzheimer's disease Neurobiol. Aging. Larbanoix, L. et al.
2010 Phosphopantetheinyl Transferase-Catalyzed Formation of Bioactive Hydrogels for Tissue Engineering J. Am. Chem. Soc. Mosiewicz, K. A. et al.
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2010 Mutations in the Caenorhabditis elegans eIF2{beta} Permit Translation Initiation From Non-AUG Start Codons. Genetics Zhang, Y, Maduzia, L.L.
2010 Phage display-derived peptides for osteosarcoma imaging Clin. Cancer Res. Sun, X. et al.
2010 Ligand regulation of the quaternary organization of cell surface M3 muscarinic acetylcholine receptors analyzed by fluorescence resonance energy transfer (FRET) imaging and homogenous time-resolved FRET J. Biol. Chem. Alvarez-Curto J. et al.
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2010 Mutations in maltose-binding protein that alter affinity and solubility properties. Appl Microbiol.Biotechnol. Walker, I.H., Hsieh, P.C.and Riggs, P.D.
2010 Multichannel perfusion culture bioluminescence reporter system for longterm detection in living cells Anal. Biochem. Watanabe, T., Enomoto, T., Takahashi, M., Honma, S., Honma, K. and Ohmiya, Y.
2010 Molecular diagnosis of neonatal diabetes mellitus using next-generation sequencing of the whole exome PLoS One Bonnefond, A., Durand, E., Sand, O. et al
2010 Localizable and Highly Sensitive Calcium Indicator Based on a BODIPY Fluorophore Anal. Chem. Kamiya M. and Johnsson K.
2010 Massively parallel sequencing of exons on the X chromosome identifies RBM10 as the gene that causes a syndromic form of cleft palate Am. J. Hum. Genet. Johnston, J.J., Teer, J.K., Cherukuri, P.F. et al
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2010 The nucleoporin Nup188 controls passage of membrane proteins across the nuclear pore complex  J. Cell Biol.  Theerthagiri, G., Eisenhardt, N., Schwarz, H. and Antonin, W.
2010 The tetrahymena argonaute-binding protein Giw1p directs a mature argonaute-siRNA complex to the nucleus Cell Noto, T., Kurth, H., Kataoka, K., Aronica, L., DeSouza, L., Siu, K., Pearlman, R., Gorovsky, M. and Mochizuki, K.
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2010 The Wolbachia endosymbiont as an anti-filarial nematode target. Symbiosis Slatko, B.E., Taylor, M.J.& Foster, J.M.
2010 Transmembrane delivery and biological effect of human growth hormone via a phage displayed peptide in vivo and in vitro J. Pharm. Sci. Zhang, T. et al.
2010 Triplet imaging of oxygen consumption during the contraction of a single smooth muscle cell Biophys. J. Geissbuehler M. et al.
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2010 Reduced evolvability of Escherichia coli MDS42, an IS-less cellular chassis for molecular and synthetic biology applications. Microbial Cell Factories Umenhoffer, K., Feher, T., Baliko, G., Ayaydin, F.Posfai, J., Blattner, F.R.and Posfai, G.
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2010 Comparative genomic hybridization of Bifidobacterium longum strains reveals broad conservation of milk utilization genes in subsp. infantis Appl. Environ. Microbiol. LoCascio, R.G., Desai, P., Sela, D.A., Weimer, B., and Mills, D.A.
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2010 Cloning of NruI and Sbo13I restriction and modification sstems in E.coli and amino acid sequence comparison of M.NruI and M.Sbo13I with other amino-methyltransferases. BMC Res Notes Zhu, Z., Pedamallu, C.S., Fomenkov, A., Benner, J.and Xu, S.Y.
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2010 Asymmetric Wolbachia Segregation during Early Brugia malayi Embryogenesis Determines Its Distribution in Adult Host Tissues. PLoS Negl Trop Dis Landmann, F., Slatko, B., Foster, J.M.and Sullivan, W.
2010 Anti-tumor effects of a novel chimeric peptide on S180 and H22 xenografts bearing nude mice Peptides Wu, D. et al.
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2010 Alteration of Sequence Specificity of the Type IIS Restriction Endonuclease BtsI PLoS ONE Guan, S., Blanchard, A., Zhang, P.and Zhu, Z.
2010 An EcR homolog from the filarial parasite, Dirofilaria immitis requires a ligand-activated partner for transactivation. Mol.Biochem.Parasitol. Shea, C., Richer, J., Tzertzinis, G.and Maina, C.V.
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2010 Identification and Phylogenetic Analysis of Dirofilaria Ursi (Nematoda: Filarioidea) from Wisconsin Black Bears (Ursus americanus) and its Wolbachia Endosymbiont J Parasitol. Michalski, S., Bain, O., Fischer, K.Fishcher, P., Kumar, S.and Foster, J.
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2010 Coordination sphere of the third metal site is essential to the activity and metal selectivity of alkaline phosphatases. Protein Sci. Koutsioulis, D., Lyskowski, A.Maki, S., Guthrie, E., Feller, G., Bouriotis, V.and Heikinheimo, P.
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2010 Engineering of a synthetic electron conduit in living cells Proc. Natl. Acad. Sci. USA Jensen, H.M., et al.
2010 Evolution of Bacterial Phosphoglycerate Mutases: Non-homologous Isofunctional Enzymes Undergoing Gene Losses, Gains and Lateral Transfers. PLoS ONE Foster, J.M., Davis, P.J., Raverdy, S., Sibley, M.H., Raleigh, E.A., Kumar, S.and Carlow, C.K.S.
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2010 D-peptide inhibitors of the p53-MDM2 interaction for targeted molecular therapy of malignant neoplasms Proc. Natl. Acad. Sci. Liu, M. et al.
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2010 Fluorescent labeling of COS-7 expressing SNAP-tag fusion proteins for live cell imaging J.Vis Exp Provost, C.R. and Sun, L.
1986 Sequencing in the Fast Lane: A Rapid Protocol for [a-35S] dATP Dideoxy DNA Sequencing. BioTechniques Williams, S.A., Slatko, B.E., Moran, L.S., and DeSimone, S.M.
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1986 Two unique restriction endonucleases from Neisseria lactamica. Nucl.Acids Res. Qiang, B.Q., and Schildkraut, I.
1986 Biochemical and immunologic characterization of a major surface antigen of Dirofilaria immitis infective larvae. J.Immunol. Philipp, M., and Davis, T.B.
1986 Cloning and comparison of repeated DNA sequences from the human filarial parasite Brugia malayi and the animal parasite Brugia pahangi. Proc.Natl.Acad.Sci.USA McReynolds, L.A., DeSimone, S.M., and Williams, S.A.
1986 Cloning and characterization of two Onchocerca volvulus repeated DNA sequences. Mol.Biochem.Parasitol. Perler, F.B., and Karam, M.
1986 Cloning the DdeI restriction-modification system using a two-step method. Nucl.Acids Res. Howard, K.A., Card, C., Benner, J.S., Callahan, H.L., Maunus, R., Silber, K., Wilson, G., and Brooks, J.E.
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1996 Genes expressed in Brugia malayi infective third stage larvae. Mol.Biochem.Parasitol. Blaxter, M.L., Raghavan, N., Ghosh, I., Guiliano, D., Lu, W., Williams, S.A., Slatko, B.and Scott, A.L.
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1996 Molecular cloning and expression of NlaIII restriction-modification system in E.coli. Gene Morgan, R.D., Camp, R.R., Wilson, G.G., and Xu, S.Y.
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1996 Cloning and sequence comparison of AvaI and BsoBI restriction-modification systems. Mol.Gen.Genet. Ruan, H., Lunnen, K.D., Scott, M.E., Moran, L.S., Slatko, B.E., Pelletier, J.J., Hess, E.J., Benner, J., Wilson, G.G., and Xu, S.Y.
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1996 Cloning of thermostable DNA polymerases from hyperthermophilic marine Archaea with emphasis on Thermococcus sp.9 degrees N-7 and mutations affecting 3'-5' exonuclease activity. Proc Natl Acad Sci Southworth, M.W., Kong, H., Kucera, R.B., Ware, J., Jannasch, H.W., and Perler, F.B.
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1996 Thermostable DNA Polymerases. Enzymes and Proteins from Hyperthermophilic Microorganisms, Advs.Protein Chemistry Perler, F.B., Kumar, S., and Kong, H.
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1996 Teaching About Science Accountability in Research Roberts, R.J.
1996 Protein Splicing: Evidence for an N-O Acyl Rearrangement as the Initial Step in the Splicing Process. Biochemistry Shao, Y., Xu, M.Q., and Paulus, H.
1996 Potent Inhibition Of T7 Rna-Polymerase With A Truncated T7 Promoter. Abstracts Of Papers Of The American Chemical Society Noren, C.J., and Moreira, R.F.
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1996 Protein splicing involving the Saccharomyces cerevisiae VMA intein.The steps in the splicing pathway, side reactions leading to protein cleavage, and establishment of an in vitro splicing system. J.Biol.Chem. Chong, S., Shao, Y., Paulus, H., Benner, J., Perler, F.B., and Xu, M.Q.
1996 Cloning and Expression of DiT33 from Dirofilaria-Immitis - a Specific and Early Marker of Heartworm Infection. Parasitology Hong, X.Q., Mejia, J.S., Kumar, S., Perler, F.B., and Carlow, C.K.S.
1996 Activation of glycosylasparaginase.Formation of Active N-Terminal Threonine by Intramolecular Autoproteolysis. J.Biol.Chem. Guan, C., Cui, T., Rao, V., Liao, W., Benner, J., Lin, C.L., and Comb, D.
1996 A Structural Basis for the Preferential Binding of Hemimethylated DNA by HhaI DNA Methyltransferase. J.Mol.Biol. O'Gara, M., Roberts, R.J., and Cheng, X.
1996 Carboxy-terminal sequence divergence and processing of the polyprotein antigen from Dirofilaria immitis1. Mol.Biochem.Parasitol. Poole, C.B., Hornstra, L.J., Benner, J.S., Fink, J.R., and McReynolds, L.A.
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1996 A Cyclosporine A-Sensitive Small Molecular-Weight Cyclophilin Of Filarial Parasites. Mol.Biochem.Parasitol. Ma, D., Hong, X.Q., Raghavan, N., Scott, A.L., McCarthy, J.A., Nutman, T.B., Williams, S.A., and Carlow, C.K.S.
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1996 Plant methyltransferases and thier targets in the plant genome. In: Epigenetic Mechanisms of Gene Regulation Cold Spring Habor Laboratory Press Adams, R.L.P. Pradhan, S., Johnson, C.A, Lindsay, H., Shek, E.W.L., Jenkins, G.I., Urwin, N.A.R.
1984 DNA modification methylases: New uses in the manipulation of DNA. BioTechniques Christ, C., and Nelson, M.
1984 Alteration of apparent restriction endonuclease recognition specificities by DNA methylases. Nucl.Acids Res. Nelson, M., Christ, C., and Schildkraut, I.
1984 Screening for and characterizing restriction endonucleases Genetic Engineering Schildkraut, I.
1984 The cleavage site for the restriction endonuclease EcoRV is 5'-GAT^ATC-3'. Gene Schildkraut, I., Banner, C.D.B., Rhodes, C.S., and Parekh, S.
1984 Acetylcholinesterase secreted by intestinal nematodes: a reinterpretation of its putative role of "biochemical holdfast." Trans.Royal Soc Trop.Med.and Hyg. Philipp, M.
1984 A type II restriction endonuclease with an eight nucleotide specificity from Streptomyces fimbriatus. Nucl.Acids.Res. Qiang, B.Q., and Schildkraut, I.
1987 NotI and SfiI: restriction endonucleases with octanucleotide recognition sequences. Methods Enzymol. Qiang, B.-Q., and Schildkraut, I.
1987 N4-Methylcytosine as a minor base in bacterial DNA. J.Bacteriol. Ehrlich, M., Wilson, G.G., Kenneth, C.K., and Gehrke, C.W.
1987 Properties and uses of restriction endonucleases. Methods Enzymol. Brooks, J.E.
1987 Nucleotide sequence of the DdeI restriction-modification system and characterization of the methylase protein. Nucl.Acids Res. Sznyter, L.A., Slatko, B., Moran, L., O'Donnell, K.H., and Brooks, J.E.
1987 Monoclonal antibody to a unique surface epitope of the human filaria Brugia malayi identifies infective larvae in mosquito vectors. Proc.Natl.Acad.Sci.USA Carlow, C.K.S., Franke, E.D., Lowrie, R.C.J., Partono, F., and Philipp, M.
1987 Highly Repeated DNA Sequences as Species-specific Probes for Brugia. Parasitology Today Piessens, W.F., McReynolds, L.A.and Williams, S.A.
1987 Genomic Cloning of Recombinant Antigens Detected by Antiserum Against Infective Larvae of Brugia Malayi. Molecular Paradigms for Eradicating Helminthic Parasites Arasu, P., and Perler, F.B.
1987 Monoclonal antibodies to parasite antigens: a rapid immunization protocol requiring small numbers of parasites. J.Parasitol. Carlow, C.K.S., Edwards, M.K., James, E.R., and Philipp, M.
1987 Isolation and Identification of restriction endonuclease BstFI Nucl.Acids Res. Kong, H and Chen, Z.
1987 The use of DNA methylases to alter the apparent recognition specificities of restriction endonucleases. Methods Enzymol. Nelson, M., and Schildkraut, I.
1987 The Use of DNA Sequencing Reactions as Probes for Southern Blots, Dot Blots and Colony Hydridizations. BioTechniques Card, C.O., Williams, S.A., Moran, L.S., Poole, C.B., and Slatko, B.E.
1987 The effect of site-specific methylation on restriction-modification enzymes. Nucl.Acids Res. Nelson, M., and McClelland, M.
1987 Purification and assay of Type II DNA methylases. Methods Enzymol. Nelson, M., and McClelland, M.
1987 The cleavage site for the restriction endonucleases BanI and HgiCI is 5' ...G^GPyPuCC ...3'. Nucl.Acids Res. Schildkraut, I., Lynch, J., and Morgan, R.
1987 Protective immunity to Brugia malayi larvae in BALB/c mice: potential of this model for the identification of protective antigens. Am.J.Trop.Med.Hyg. Carlow, C.K.S., and Philipp, M.
1987 Restriction endonucleases for pulsed field mapping of bacterial genomes. Nucl.Acids Res. McClelland, M., Jones, R., Patel, Y., and Nelson, M.
1987 Restriction and modification in vivo by Escherichia coli K12 Methods Enzymol. Raleigh, E.A.
1987 Enhancement of the apparent cleavage specificities of restriction endonucleases: applications to megabase mapping of chromosomes. McClelland, M., and Nelson, M.
1987 Cloning of two type II methylase genes that recognise asymmetric nucleotide sequences: FokI and HgaI. Mol.Gen.Genet. Nwankwo, D., and Wilson, G.
1987 Cloning and characterization of an abundant Plasmodium knowlesi antigen which cross reacts with Gambian sera. Mol.Biochem.Parasitol. Perler, F.B., Moon, A.M., Qiang, B.-Q., Meda, M., Dalton, M., Card, C., Schmidt-Ullrich, R., Wallach, D., Lynch, J., and Donelson, J.E.
1987 Cloning, sequencing and expression of the TaqI restriction-modification system. Nucl.Acids Res. Slatko, B.E., Benner, J.S., Jager-Quinton, T., Moran, L.S., Simcox, T.G., VanCott, E.M., and Wilson, G.G.
1987 Cloning, sequencing, in vivo promoter mapping, and expression in Escherichia coli of the gene for the HhaI methyltransferase. J.Biol.Chem. Caserta, M., Zacharias, W., Nwankwo, D., Wilson, G.G., and Wells, R.D.
1987 Brugia malayi: recombinant antigens expressed by genomic DNA clones. Exp.Parasitol. Arasu , P., Philipp, M., and Perler, F.
1987 A unique type II restriction endonuclease from Acinetobacter lwoffi N. Nucl.Acids Res. Morgan, R.D., Dalton, M., and Stote, R.
1987 A Developmentally regulated surface epitope expressed by the infective larva of Brugia malayi which is rapidly lost after infection. Molecular Paradigms for Eradicating Helmenthic Parasites Carlow, C.K.S., Perrone, J., Spielman, A., and Philipp, M.A.
1991 Overexpression, purification and crystallization of BamHI endonuclease. Nucl.Acids Res. Jack, W.E., Greenough, L., Dorner, L.F., Xu, S.Y., Strzelecka, T., Aggarwal, A.K., and Schildkraut, I.
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1991 Filarial DNA probes in Jakarta. Parasitol.Today McReynolds, L.A., Poole, C.B., and Williams, S.A.
1991 Cross-linking of a monoclonal antibody-antigen complex enables detection of parasite antigen in immunoblots and in an expression library. Mol.Biochem.Parasitol. Awobuluyi, M., Mania, C.V., and Carlow, C.K.S.
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1991 Histochemical localization of gene expression in Onchocerca volvulus: in situ DNA histohybridization and immuno-cytochemistry. Mol.Biochem.Parasitol. Tuan, R.S., Shepley, K.J., M.M., M., Abraham, D., and Perler, F.B.
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1991 Chacterization of Expression of the Escherichia coli Mrr Restriction System. J.Bacteriol. Waite-Rees, P.A., Keating, C.J., Moran, L.S., Slatko, B.E., Hornstra, L.J., and Benner, J.S.
1991 BfaI, a new MaeI isoschizomer from Bacteroides fragilis, recognizes the sequence 5' C^TAG 3'. Nucl.Acids Res. Reinecke, S.N., and Morgan, R.D.
1991 Characterization of a recombinant clone of Wuchereria bancrofti with specificity for human lymphatic filarial parasites. Mol.Biochem.Parasitol. Raghavan, N., McReynolds, L.A., Maina, C.V., Feinstone, S.M., Jayaraman, K., Ottesen, E., and Nutman, T.B.
1991 Cofactor requirements of BamHI mutant endonuclease E77K and its suppressor mutants. J.Bacteriol. Xu, S.Y., and Schildkraut, I.
1991 Characterization of the cloned BamHI restriction modification system: its nucleotide sequence, properties of the methylase, and expression in heterologous hosts. Nucl.Acids Res. Brooks, J.E., Nathan, P.D., Landry, D., Sznyter, L.A., Waite-Rees, P., Ives, C.L., Moran, L.S., Slatko, B.E., and Benner, J.S.
1991 Application of a novel chemiluminescence-based DNA detection method to single-vector and multiplex DNA sequencing. BioTechniques Creasey, A., D'Angio, L., Dunne, T.S., Kissinger, C., O'Keefe, T., Perry-O'Keefe, H., Moran, L.S., Roskey, M., Schildkraut, I.and Sears, L.E.
1991 A Novel Activity in Escherichia coli K-12 That Directs Restriction of DNA Modified at CG Dinucleotides. J.Bacteriol. Kelleher, J.E., and Raleigh, E.A.
1991 A new type II restriction endonuclease, BsoOI, from Bacillus stearothermophilus Chinese Sci. Bull Pan, X.S. and Chen, Z.F.
1992 Using Molecular Biological Techniques to Identify and Study Gene Products Involved in Dirofilarial Immunoprophylaxis. American Heartworm Society Hough, D.M., Awobuluyi, M.E., McReynolds, L.A., Carlow, C.K.S., and Maina, C.V.
1992 Transmission-blocking antibodies recognize microfilarial chitinase in brugian lymphatic filariasis. Proc.Natl.Acad.Sci.USA Fuhrman, J.A., Lane, W.S., Smith, R.F., Piessens, W.F., and Perler, F.B.
1992 The corrected nucleotide sequences of the TaqI restriction and modification enzymes reveal a thirteen-codon overlap. Gene Barany, F., Slatko, B., Danzitz, M., Cowburn, D., Schildkraut, I., and Wilson, G.G.
1992 Amino acid sequence arrangements of DNA-methyltransferases. Methods Enzymol. Wilson, G.G.
1992 ApoI, a unique restriction endonuclease from Arthrobacter protophormiae which recognizes 5' RAATTY-3'. Nucl.Acids Res. Polisson, C., and Robinson, D.
1992 Brugia malayi: patterns of expression of surface-associated antigens. Exp.Parasitol. Storey, N.and Philipp, M.
1992 McrBC: a multisubunit GTP-dependent restriction endonuclease. J.Mol.Biol. Sutherland, E., Coe, L., and Raleigh, E.A.
1992 Intervening sequences in an Archaea DNA polymerase gene. Proc.Natl.Acad.Sci.USA Perler, F.B., Comb, D.G., Jack, W.E., Moran, L.S., Qiang, B., Kucera, R.B., Benner, J., Slatko, B.E., Nwankwo, D.O., Hempstead, S.K., Carlow, C.K.S.and Jannasch, H.
1992 Organization and function of the mcrBC genes of Escherichia coli K-12. Mol.Microbiol Raleigh, E.A.
1992 Protein splicing removes intervening sequences in an archaea DNA polymerase. Nucl.Acids Res. Hodges, R.A., Perler, F.B., Noren, C.J., and Jack, W.E.
1992 Regulation of the BamHI restriction-modification system by a small intergenic open reading frame, bamHIC, in both Escherichia coli and Bacillus subtilis. J.Bacteriol. Ives, C.L., Nathan, P.D., and Brooks, J.E.
1992 Characterization of Type II DNA-Methyltransferases. Methods Enzymol. Landry, D., Barsomian, J.M., Feehery, G.R., and Wilson, G.G.
1992 Characterization of a muscle-associated antigen from Wuchereria bancrofti. Exp.Parasitol. Raghavan, N., Maina, C.V., Fitzgerald, P.C., Tuan, R.S., Slatko, B.E., Ottesen, E.A., and Nutman, T.B.
1992 CircumVent» Thermal Cycle Sequencing and Alternative Manual and Automated DNA Sequencing Protocols Using the Highly Thermostable VentR» (exo-) DNA Polymerase. BioTechniques Sears, L.E., Moran, L.S., Kissinger, C., Creasey, T., Perry-O'Keefe, H., Roskey, M., Sutherland, E., and Slatko, B.E.
1992 Identification of surrogate rodent hosts for larval Onchocerca lienalis and induction of protective immunity in a model system. J Parasitol. Abraham, D., Eberhard, M.L., Lange, A.M., Yutanawiboonchai, W., Perler, F.B.and Lok, J.B.
1992 Cloning of a cuticular antigen that contains multiple tandem repeats from the filarial parasite Dirofilaria immitis. Proc.Natl.Acad.Sci.USA Poole, C.B., Grandea, A.G., III, Maina, C.V., Jenkins, R.E., Selkirk, M.E., and McReynolds, L.A.
1994 An amazing distortion in DNA induced by a methyltransferase (Nobel lecture) Bioscience Reports Roberts, R.J.
1994 An amazing distortion in DNA induced by a methyltransferase (Nobel lecture) Angew.Chem.Int.Ed.Engl. Roberts, R.J.
1994 An analysis of the humoral immune response of dogs following vaccination with irradiated infective larvae of Dirofilaria immitis. Parasite Immunol. Mejia, J.S., and Carlow, C.K.S.
1994 DNA sequencing Curr.Protoc.Mol.Biol. Slatko, B., Heinrich, P., Nixon, B.T., Eckert, R.L., Albright, L., and Ausubel, F.
1994 Direct selection of binding proficient/catalytic deficient variants of BamHI endonuclease. Nucl.Acids.Res. Dorner, L.F., and Schildkraut, I.
1994 Expression of an Onchocerca volvulus Ov33 homolog in Dirofilaria immitis: potential in immunodiagnosis of heartworm infection. Parasite Immunol. Mejia, S.J., Knenfou, C., Southworth, M.W., Perler, F.B.and Carlow, C.K.
1994 Fibroblast growth factor and cyclic AMP (cAMP) synergistically active gene expression at a cAMP response element. Mol.Cell.Biol. Tan, Y., Low, K.G., Boccia, C., Grossman, J., and Comb, M.J.
1994 Expression, purification, and crystallization of restriction endonuclease PvuII with DNA containing its recognition site Proteins Balendiran, K., Bonventre, J., Knott, R., Jack, W., Benner, J., Schildkraut, I., and Anderson, J.E.
1994 Cloning, analysis and expression of the HindIII R-M-encoding genes. Gene Nwankwo, D.O., Moran, L.S., Slatko, B.E., Waite-Rees, P.A., Dorner, L.F., Benner, J.S., and Wilson, G.G.
1994 Characterization of BcgI, a new kind of restriction-modification system. J.Biol.Chem. Kong, H., Roemer, S.E., Waite-Rees, P.A., Benner, J.S., Wilson, G.G., and Nwankwo, D.O.
1994 Construction of pSC101 derivatives with Camr and Tetr for selection or LacZ' for blue/white screening. BioTechniques Xu, S.Y., and Fomenkov, A.
1994 Crystallization and Preliminary X-ray Analysis of Restriction Endonuclease BamHI-DNA Complex. J.Mol.Biol. Strzelecka, T., Newman, M., Dorner, L.F., Knott, R., Schildkraut, I., and Aggarwal, A.K.
1994 Crystallization and Preliminary Crystallographic Analysis of Two Endo-b-N-acetylglucosaminidases, Endo H and Endo F1. J.Mol.Biol. Van Roey, P., Silva, G.H., Rao, V., Plummer, J., T.H., Tarention, A.L., and Guan, C.
1994 Protein splicing: an analysis of the branched intermediate and its resolution by succinimide formation. EMBO J. Xu, M.Q., Comb, D.G., Paulus, H., Noren, C.J., Shao, Y., and Perler, F.B.
1994 Organization and sequence of the SalI restriction-modification system. Gene Rodicio, M.R., Quinton-Jager, T., Moran, L.S., Slatko, B.E., and Wilson, G.G.
1994 Protein splicing elements: inteins and exteins - a definition of terms and recommended nomenclature. Nucl.Acids Res. Perler, F.B., Davis, E.O., Dean, G.E., Gimble, F.S., Jack, W.E., Neff, N., Noren, C.J., Thorner, J., and Belfort, M.
1994 Response to UV Damage by Four Escherichia coli K-12 Restriction Systems. J.Bacteriol. Kelleher, J.E., and Raleigh, E.A.
1994 REBASE - restriction enzymes and methylases Nucl.Acids.Res. Roberts, R.J.and Macelis, D.
1994 Histone-encoding genes from Pyrococcus: evidence for members of the HMf family of archaeal histones in a non-methanogenic Archaeon*. Gene Sandman, K., Perler, F.B., and Reeve, J.N.
1994 Hhal Methyltransferase Flips its Target Base Out of the DNA Helix. Cell Klimasauskas, S., Kumar, S., Roberts, R.J., and Cheng, X.
1994 Ligand-induced conformational states of the cytosine-specific DNA methyltransferase M.HgaI-2. J.Mol.Biol. Baldwin, G.S., Kelly, S.M., Price, N.C., Wilson, G.G., Connolly, B.A., Artymiuk, P.J., and Hornby, D.P.
1994 Organization and sequence of the HpaII restriction-modification system and adjacent genes. Gene Kulakauskas, S., Barsomian, J.M., Lubys, A., Roberts, R.J., and Wilson, G.G.
1994 Molecular Cloning of an Onchocerca volvulus Extracellular Cu-Zn Superoxide Dismutase. Infect.Immun. James, E.R., McLean, D.C.J., and Perler, F.B.
1994 Structure of PvuII endonuclease with cognate DNA. EMBO J. Cheng, X., Balendiran, K., Schildkraut, I., and Anderson, J.E.
1994 VISA: Visual Sequence Analysis for the comparison of multiple amino acid sequences. CABIOS Posfai, J., Szaraz, Z., and Roberts, R.J.
1994 Three-dimensional structure of the adenine-specific DNA methyltransferase M.Taq I in complex with the cofactor S-adenosylmethionine. Proc.Natl.Acad.Sci.USA Labahn, J., Granzin, J., Schluckebier, G., Robinson, D.P., Jack, W.E., Schildkraut, I., and Saenger, W.
1994 Structure of restriction endonuclease BamHI phased at 1.95 A resolution by MAD analysis. Structure Newman, M., Strzelecka, T., Dorner, L.F., Schildkraut, I., and Aggarwal, A.K.
1994 Structure of restriction endonuclease BamHI and its relationship to EcoRI. Nature Newman, M., Strzelecka, T., Dorner, L.F., Schildkraut, I., and Aggarwal, A.K.
1994 The DNA (cytosine-5) methyltransferases. Nucl.Acids Res. Kumar, S., Cheng, X., Klimasauskas, S., Sha, M., Posfai, J., Roberts, R.J., and Wilson, G.G.
1994 Thermal cycle Dideoxy DNA Sequencing. Methods Mol.Biol. Slatko, B.E.
1994 Identification of a new type-II restriction enzyme BsrGI from Bacillus stearothermophilus GR75 Chinese Sci. Bull. Chen, Z.F., Pan, X.S.
1994 The 'endo-blue method' for direct cloning of restriction endonuclease genes in E.coli. Nucl.Acids Res. Fomenkov, A., Xiao, J.P., Dila, D., Raleigh, E., and Xu, S.Y.
1994 The I-CeuI endonuclease: purification and potential role in the evolution of Chlamydomonas group I introns. Eur. J. Biochem Marshall, P., Davis, T.B., Lemieux,C.
1994 Restriction and modification. In: Molecular Biology of Bacteriophage T4 American Society for Microbiology, Washington, D.C. Carlson, K., Raleigh, E.A. and Hattman, S.
1990 Cloning and characterization of the HpaII methylase gene. Nucl.Acids Res. Card, C.O., Wilson, G.G., Weule, K., Hasapes, J., Kiss, A., and Roberts, R.J.
1990 Cleavage at the twelve-base-pair sequence 5'-TCTAGATCTAGA-3' using M.XbaI (TCTAGm6A) methylation and DpnI (Gm6A/TC) cleavage. Nucl.Acids Res. Patel, Y., Van Cott, E., Wilson, G.G., and McClelland, M.
1990 Cloning, characterization, and expression in Escherichia coli of the gene coding for the CpG DNA methylase from Spiroplasma sp.strain MQ1(M.SssI). Nucl.Acids Res. Renbaum, P., Abrahamove, D., Fainsod, A., Wilson, G.G., Rottem, S., and Razin, A.
1990 Filarial paramyosin: cDNA sequences from Dirofilaria immitis and Onchocerca volvulus. Mol.Biochem.Parasitol. Limberger, R.J., and McReynolds, L.A.
1990 Altered specificity of restriction endonucleases HinfI. Nucl.Acids Res. Petronzio, T., and Schildkraut, I.
1990 Field testing of monoclonal probe specific for infective larvae of human Brugian parasites. Parasites: Molecular Biology, Drug and Vaccine Design Carlow, C.K.S., Suwita, A., Bahang, Z., Purnomo, Partono, F., and Philipp, M.
1990 AciI, a unique restriction endonuclease from Arthrobacter citreus which recognizes 5' CCGC3'. Nucl.Acids Res. Polisson, C., and Morgan, R.D.
1990 Antigenic and dynamic properties of the surface of Onchocerca microfilariae. Trop.Med.Parasitol. Edwards, M.K., Busto, P., James, E.R., Carlow, C.K.S., and Philipp, M.
1990 B CELL RESPONSES TO PARAMYOSIN.Isotypic Analysis and Epitope Mapping of Filarial Paramyosin in Patients with Onchocerciasis. J.Immunol. Steel, C., Limberger, R.J., McReynolds, L.A., Ottesen, E.A., and Nutman, T.B.
1990 Anti-idiotypic antibodies function as a surrogate surface epitope of Brugia malayi infective larvae. Acta Trop. Carlow, C.K.S., Busto, P., Storey, N., and Philipp, M.
1990 Genetic and sequence organization of the mcrBC locus of Escherichia coli K-12. J.Bacteriol. Dila, D., Sutherland, E., Moran, L., Slatko, B., and Raleigh, E.A.
1990 Nucleotide sequence of the phage l gt11 SacI-KpnI lacZ region. Gene Moran, L.S., Maina, C.V., Poole, C.B., and Slatko, B.E.
1990 Identification of a new type II restriction endonuclease BsaAI. Nucl.Acids Res. Kong, H., Morgan, R.D., and Chen, Z.
1990 The identification of an Onchocerca-specific recombinant antigen containing a T cell epitope. J Immunol. Colina, K.F., Perler, F.B., Matsumura, I., Meda, M., and Nutman, T.B.
1990 A new type II restriction endonuclease, BsmAI, from Bacillus stearothermophilus. Nucl.Acids Res. Kong, H., Morgan, R.D., and Chen, Z.
1990 Cloning and Characterization of the SphI restriction modification system from Streptomyces phaeochromogenes J Cell Biochem Brooks, J.E., Sznyter, L., Vaccaro, C., Arnaud, M., Jager-Quinton, T., Wilson, G., Moran, L., Slatko, B., Bernan, V.
1990 Structural studies opf the BamHI restriction enzyme Biophys. J. Strzelecka, T., Dorner, L., Schildkraut, I., Aggarawal, A.
1985 Nuclear and Mitochondrial DNA of the Primate Malarial Parasite Plasmodium Knowlesi. Mol.Biochem.Parasitol. Williamson, D.H., Wilson, R.J., Bates, P.A., McCready, S., Perler, F., and Qiang, B.Q.
1985 Nucleotide sequence of the PaeR7 restriction/modification system and partial characterization of its protein products. Nucl.Acids Res. Theriault, G., Roy, P.H., Howard, K.A., Benner, J.S., Brooks, J.S., Waters, A.F., and Gingeras, T.R.
1985 The effect of site specific methylation on restriction endonuclease digestion. Nucl.Acids Res. McClelland, M., and Nelson, M.
1985 Purification of MboII methylase (GAAGmA) from Moraxella bovis: site specific cleavage of DNA at nine and ten base pair sequences. Nucl.Acids Res. McClelland, M., Nelson, M., and Cantor, C.R.
1989 A l gt11 cDNA recombinant that encodes Dirofilaria immitis paramyosin. Mol.Biochem.Parasitol. Grandea, A.G.I., Le, T.K.T., Asikin, N., Davis, T.B., Philipp, M., Cohen, C., and McReynolds, L.A.
1989 Characterization and cloning of MwoI (GCN7GC), a new type-II restriction-modification system from Methanobacterium wolfei. Gene Lunnen, K.D., Morgan, R.D., Timan, C.J., Krzycki, J.A., Reeve, J.N., and Wilson, G.G.
1989 M.FokI methylates adenine in both strands of its asymmetric recognition sequence. Gene Landry, D., Looney, M.C., Feehery, G.R., Slatko, B.E., Jack, W.E., Schildkraut, I., and Wilson, G.G.
1989 Isolation and characterization of restriction endonuclease BstFI and BstSI from Bacillus stearothermophilus. J.Fudan Univ.Natural Sci. Chen Z., Kong, H.and Wang, L.
1989 MscI, a type II restriction endonuclease from Micrococcus species which recognizes 5' TGGCCA 3'. Nucl.Acids Res. Polisson, C.
1989 Use of Degenerate Oligonucleotides for Amplification of the nifH Gene from the Marine Cyanobacterium Trichodesmium thiebautii. Appl.Environ.Microbiol., Zehr, J.P., and McReynolds, L.A.
1989 Nucleotide sequence of the FokI restriction-modification system: separate strand-specificity domains in the methyltransferase. Gene Looney, M.C., Moran, L.S., Jack, W.E., Feehery, G.R., Benner, J.S., Slatko, B.E., and Wilson, G.G.
1989 DrdI, a unique restriction endonuclease from Deinococcus radiodurans which recognizes 5'GACN6GTC3'. Nucl.Acids Res. Polisson, C., and Morgan, R.D.
1989 Cloning the BamHI restriction modification system. Nucl.Acids Res. Brooks, J.E., Benner, J.S., Heiter, D.F., Silber, K.R., Sznyter, L.A., Jager-Quinton, T., Moran, L.S., Slatko, B.E., Wilson, G.G., and Nwankwo, D.O.
1989 Introduction of prokaryotic HhaI DNA methyltransferase alters the phenotype of 3T3 cells. Proc.Am.Assoc.Cancer Res. Herman, J., Nelkin, B., Mabry, M., Wilson, G., and Baylin, S.
1989 Genetic and physical mapping of the mcrA (rglA) and mcrB (rglB) loci of Escherichia coli K-12. Genetics Raleigh, E.A., Trimarchi, R., and Revel, H.
1989 Human T-cell stimulation, molecular characterization and in situ mRNA localization of a Brugia malayi recombinant antigen. Mol.Biochem.Parasitol. Arasu, P., Nutman, T.B., Steel, C., Mulligan, M.M., Abraham, D., Tuan, R.S., and Perler, F.B.
1989 Site-directed mutagenesis of the EcoRV methylase for the study of the functional role of the conserved sequences in N6-adenine methylases J. Cell Biochem Barshevsky,T. and Benner J.S.
1989 Characterization of clones of the BamHI methyltransferase gene J. Cell Biochem. Nathan, P.D. and Brooks. J.E.
1988 AseI, a restriction endonuclease from Aquaspirillum serpens which recognizes 5'ATTAAT3'. Nucl.Acids Res. Polisson, C., and Morgan, R.D.
1988 BsrI, a unique restriction endonuclease from Bacillus stearothermophilus which recognizes 5'ACTGG3'. Nucl.Acids Res. Polisson, C., and Morgan, R.D.
1988 An Escherichia coli vector to express and purify foreign proteins by fusion to and separation from maltose-binding protein. Gene Maina, C.V., Riggs, P.D., Grandea, A.G.I., Slatko, B.E., Moran, L.S., Tagliamonte, J.A., McReynolds, L.A., and Guan, C.D.
1988 Cloned restriction-modification systems - a review. Gene Wilson, G.G.
1988 Characterization of clones of the BamHI methyltransferase gene. Gene Nathan, P.D.and Brooks, J.E.
1988 Cloning and analysis of the HaeIII and HaeII methyltransferase genes. Gene Slatko, B.E., Croft, R., Moran, L.S., and Wilson, G.G.
1988 A site-specific single strand endonuclease activity induced by NYs-1 virus infection of a Chlorella-like green alga. Nucl.Acids Res. Xia, Y., Morgan, R., Schildkraut, I., and Van Etten, J.L.
1988 Cloning Type II restriction and modification genes. Gene Lunnen, K.D., Barsomian, J.M., Camp, R.R., Card, C.O., Chen, S.Z., Croft, R., Looney, M.C., Meda, M.M., Moran, L.S., Nwankwo, D.O., Slatko, B.E., Van Cott, E.M., and Wilson, G.G.
1988 Cloning the FnuDI, NaeI, NcoI and XbaI restriction-modification systems. Gene Van Cott, E.M., and Wilson, G.G.
1988 EarI, a restriction endonuclease from Enterobacter aerogenes which recognizes 5'CTCTTC3'. Nucl.Acids Res. Polisson, C., and Morgan, R.D.
1988 IMMUNITY IN FILARIASIS: Perspectives for Vaccine Development. Ann.Rev.Microbiol. Philipp, M., Davis , T.B., Storey, N., and Carlow, C.K.S.
1988 Genetic dissection of the methylcytosine-specific restriction system mcrB of Escherichia coli K-12. Gene Dila, D., and Raleigh, E.A.
1988 Cloning and sequencing the HinfI restriction and modification genes. Gene Chandrasegaran, S., Lunnen, K.D., Smith, H.O., and Wilson, G.G.
1988 Cloning and expression of the MspI restriction and modification genes. Gene Nwankwo, D.O., and Wilson, G.G.
1988 Cloning of the HhaI and HinPI restriction-modification systems. Gene Barsomian, J.M., Card, C.O., and Wilson, G.G.
1988 Cloning, purification and characterization of the HincII and HindII methyltransferases from Haemophilus influenzae. Gene Rees, P.A., Nwankwo, D.O., Wilson, G.G., and Benner, J.S.
1988 Cloning, purification and characterization of the M.NdeI methyltransferase from Neisseria denitrificans Gene Silber, K.R., Polisson, C., Rees, P.A., and Benner, J.S.
1988 The characterization and cloning of the EagI restriction-modification system. Gene Sznyter, L.A., and Brooks, J.E.
1988 The Amino Acid Sequence of the Eukaryotic DNA [N6-adenine] Methyltransferase, M-CviBIII, Has Regions of Similarity With the Prokaryotic Isoschizomer M-TaqI and Other DNA [N6-adenine] Methyltransferases. Gene Narva, K.E., Van Etten, J.L., Slatko, B.E.and Benner, J.S.