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We believe that basic research and the cultivation of scientific knowledge is critical for us to stay connected with our customers and to drive scientific breakthroughs. At NEB, over 30 labs participate in research projects, which are aided by post-doctoral fellows and students in Masters and Ph.D. programs. NEB researchers have authored or co-authored over 1,000 publications (as of 1/17) many of which are in peer-reviewed journals. Further, NEB products have been used successfully in numerous publications by scientists throughout the world.

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Year Title Journal Authors Application(s)
2017 Various Mutations compensate for a deleterious lacZα insert in the replication enhancer of M13 bacteriophage PLoS One Zygiel, E.M., Noren, K.A., Adamkiewicz, M.A., Aprile, R.J., Bowditch, H.K., Carroll, C.L., Cerezo, M.A.S., Dagher, A.M., Hebert, C.R., Hebert, L.E., Mahame, G.M., Milne, S.C., Silvestri, K.M., Sutherland, S.E., Sylvia, A.M., Taveira, C.N., VanValkenburgh, D.J., Noren, C.J., Hall, M.F.
1998 The Maltoxe-Binding Protein as a Scaffold for Monovalent Display of Peptides Derived from Phage Libraries. Anal.Biochem. Zwick, M.B., Bonnycastle, L.L.C., Noren, K.A., Venturini, S., Leong, E., Barbas, C.F., Noren, C.J.and Scott, J.K.
2003 Phosphorylation of eIF4E attenuates its interaction with mRNA 5' cap analogs by electrostatic repulsion: intein-mediated protein ligation strategy to obtain phosphorylated protein RNA Zuberek, J., et al.
2007 Identification and evaluation of a new tumor cell-binding peptide J. Nucl. Med. Zitzman, S. et al.
2008 DNA damage in preserved specimens and tissue samples: a molecular assessment. Frontiers in Zoology Zimmermann, J., Hajibabaei, M., Blackburn, D.C., Hanken, J., Cantin, E., Posfai, J.and Evans, T.C.
2008 Sialylation of beta1 integrins blocks cell adhesion to galectin-3 and protects cells against galectin-3-induced apoptosis J. Biol. Chem. Zhuo, Y., Chammas, R., Bellis, S.L.
2014 Elimination of inter-domain interactions increases the cleavage fidelity of the restriction endonuclease DraIII Protein Cell Zhuo W, Lai X, Zhang L, Chan SH, Li F, Zhu Z, Yang M, Sun D
2012 Structural bias in T4 RNA ligase-mediated 3'-adapter ligation Nucleic Acids Res. Zhuang, F., Fuchs, R.T., Sun, Z., Zheng, Y. and Robb, G.B.
2012 Review: Small RNA expression profiling by high-throughput sequencing: Implications of enzymatic manipulation Journal of Nucleic Acids Zhuang, F., Fuchs, R.T. and Robb, G.B.
2003 Isolation of BsoBI restriction endonuclease variants with altered substrate specificity. J.Mol.Biol. Zhu, Z., Zhou, J., Friedman, A.M.and Xu, S.-Y.
2004 Engineering Strand-specific DNA Nicking Enzymes fro the Type IIS Restriction Endonucleases BsaI, BsmBI and BsmAI. J.Mol.Biol. Zhu, Z., Samuelson, J.C., Zhou, J., Dore, A.and Xu, S.-Y.
2010 Cloning of NruI and Sbo13I restriction and modification sstems in E.coli and amino acid sequence comparison of M.NruI and M.Sbo13I with other amino-methyltransferases. BMC Res Notes Zhu, Z., Pedamallu, C.S., Fomenkov, A., Benner, J.and Xu, S.Y.
2014 Characterization of cleavage intermediate and star sites of RM.Tth111II. Sci Rep Zhu, Z., Guan, S., Robinson, D., El Fezzazi, H., Quimby, A. and Xu, S-Y.
2011 A reporter system for assaying influenza virus RNP functionality based on secreted Gaussia luciferase activity Virology J. Zhu, W. et al.
2015 An IL-27/NFIL3 signalling axis drives Tim-3 and IL-10 expression and T-cell dysfunction Nat Commun Zhu, C., Sakuishi, K., Xiao, S., Sun, Z., Zaghouani, S., Gu, G., Wang, C., Tan, D.J., Wu, C., Rangachari, M., Pertel, T., Jin, H.T., Ahmed, R., Anderson, A.C., Kuchroo, V.K.
2012 Reconstitution of translation from Thermus thermophilus reveals a minimal set of components sufficient for protein synthesis at high temperatures and functional conservation of modern and ancient translation components Nucleic Acids Res. Zhou, Y., Asahara, H. and Chong, S.
2011 Expression of heparin sulfate sulfotransferases in Kluyveromyces lactisand preparation of PAPS Glycobiology Advance Access Zhou, X., et al.
2002 Cloning, Expression and Immunization of the new antigen gene Sj-Ts4 of Schistosoma japonicum. Acta Biochimica et Biophysica Sinica Zhou, D.-M., Yi, X.-Y., Zeng, X.-F., Wang, M., Cai, C., Wang, Q.-L., Zhang, S.-K., McReynolds, L.
2007 Genetically encoded short peptide tags for orthogonal protein labeling by Sfp and AcpS phosphopantetheinyl transferases ACS Chemical Biology Zhou Z. et al.
2015 High-Density Genetic Mapping with Interspecific Hybrids of Two Sea Urchins, Strongylocentrotus nudus and S. intermedius, by RAD Sequencing. PLoS One. Zhou Z, Liu S, Dong Y, Gao S, Chen Z, Jiang J, Yang A, Sun H, Guan X, Jiang B, Wang B.
2014 Engineering Bacterial Transcription Regulation To Create a Synthetic in Vitro Two-Hybrid System for Protein Interaction Assays J Am Chem Soc Zhou Y, Asahara H, Schneider N, Dranchak P, Inglese J, Chong S
2002 Endosomal localization and function of sorting Proc. Natl. Acad. Sci. USA Zhong, Q., et al.
2012 Characterization of Transcription Factors That Regulate the Type IV Secretion System and Riboflavin Biosynthesis in Wolbachia and Brugia malayi PLoS One Zhiru, Li and Carlow, C.K.S.
2011 Screening of specific binding peptide targeting blood vessel of human esophageal cancer in vivo in mice Chin. Med. J. Zhi, M. et al.
2007 Selection of restriction endonucleases using artificial cells. Nucl.Acids.Res. Zheng, Y.and Roberts, R.
2002 Computational Identification of Operons in Microbial Genomes. Genome Res. Zheng, Y., Szustakowski, J.D., Fortnow, L., Roberts, R.J.and Kasif, S.
2002 Genomic functional annotation using co-evolution profiles of gene clusters. Genome Biol. Zheng, Y., Roberts, R.J.and Kasif, S.
2005 Characterization of Two New Aminopeptidases in Escherichia coli. BMC Bioinformatics Zheng, Y., Roberts, R.J., Kasif, S.and Guan, C.
2004 Segmentally Variable Genes: A new perspective on adaptation. PLoS Biology Zheng, Y., Roberts, R.J., and Kasif, S.
2009 Using shotgun sequence data to find active restriction enzyme genes Nuc. Acid. Res. Zheng, Y., Posfai, J., Morgan, R. D., Vincze, T., and Roberts, R.J.
2005 Phylogenetic detection of conserved gene clusters in microbial genomes. BMC Bioinformatics Zheng, Y., Anton, B.P., Roberts, R.J.and Kasif, S.
2010 A unique family of Mrr-like modification-dependent restriction endonucleases Nucl. Acids Res. Zheng, Y. et al.
2015 TALEN-mediated targeting of HPV oncogenes ameliorates HPV-related cervical malignancy. J Clin Invest Zheng Hu, Wencheng Ding, Da Zhu, Lan Yu, Xiaohui Jiang, Xiaoli Wang, Changlin Zhang, Liming Wang, Teng Ji, Dan Liu, Dan He, Xi Xia, Tao Zhu, Juncheng Wei, Peng Wu, Changyu Wang, Ling Xi, Qinglei Gao, Gang Chen, Rong Liu, Kezhen Li, Shuang Li, Shixuan Wang, Jianfeng Zhou, Ding Ma, Hui Wang Genome Editing
2011 Simple and efficient synthesis of 5′ pre-adenylated DNA using thermostable RNA ligase. Nucl.Acids Res. Zhelkovsky, A.M.and McReynolds, L.A.
2012 Structure-function analysis of Methanobacterium thermoautotrophicum RNA ligase - engineering a thermostable ATP independent enzyme BMC Mol Biol. Zhelkovsky, A.M. and McReynolds, L.A.
2008 Purification of green fluorescent protein using a two-intein system Appl. Microbiol. Biotechnol. Zhao, Z., et. al.
2010 Isolation and initial application of a novel peptide that specifically recognizes the neural stem cells derived from rhesus monkey embryonic stem cells J. Biomol. Screen. Zhao, W. et al.
2008 An efficient on-column expressed protein ligation strategy: application to segmental triple labeling of human apolipoprotein E3 Protein Sci.  Zhao, W. et al.
2010 Novel peptide ligands that bind specifically to mouse embryonic stem cells Peptides Zhao, S. et al.
2007 Circumventing the heterogeneity and instability of human serum albumin-interferon-_2b fusion protein by altering its orientation J. Biotech.  Zhao, H.L., et al.
2014 Gene and protein sequence optimization for high-level production of fully active and aglycosylated lysostaphin in Pichia pastoris Appl Environ Microbiol Zhao H, Blazanovic K, Choi Y, Bailey-Kellogg C, Griswold KE Glycobiology
2014 Boronic acid-mediated polymerase chain reaction for gene- and fragment-specific detection of 5-hydroxymethylcytosine Nucleic Acids Res Zhao C, Wang H, Zhao B, Li C, Yin R, Song M, Liu B, Liu Z, Jiang G
2003 The role of C-terminal tyrosine phosphorylation in the regulation of SHP-1 explored via expressed protein ligation J. Biol. Chem. Zhang, Z., et al.
2005 The chitin synthase genes chs-1 and chs-2 are essential for C.elegans development and responsible for chitin deposition in the eggshell and pharynx, respectively. Dev.Biol. Zhang, Y., Foster, J.M., Nelson, L.S., Ma, D.and Carlow C.K.S.
2004 Cofactor-independent Phosphoglycerate Mutase Has an Essential Role in Caenorhabditis elegans and Is Conserved in Parasitic Nematodes. J.Biol.Chem. Zhang, Y., Foster, J.M., Kumar, S., Fougere, M.and Carlow C.K.S.
2010 Mutations in the Caenorhabditis elegans eIF2{beta} Permit Translation Initiation From Non-AUG Start Codons. Genetics Zhang, Y, Maduzia, L.L.
2010 Transmembrane delivery and biological effect of human growth hormone via a phage displayed peptide in vivo and in vitro J. Pharm. Sci. Zhang, T. et al.
2009 Engineering BspQI nicking enzymes and application of N.BspQI in DNA labeling and production of single-strand DNA. Protein Expr.Purif. Zhang, P., Too, P.H., Samuelson, J.C., Chan, S.H., Vincze, T., Doucette, S., Backstrom, S., Potamousis, K.D., Schramm, T.M., Forrest, D., Schwartz, D.C.and Xu, S.Y.
2010 Engineering BspQI nicking enzymes and application of N.BspQI in DNA labeling and production of single-strand DNA Protein Exp Purif Zhang, P., Too, P.H., Samuelson, J.C., Chan, S.H., Vincze, T., Doucete, S., Backstrom, S., Potamousis, K.D., Schramm, T.M., Forrest, D., Schwartz, D.C., Xu, S.Y.
2007 Rational design of a chimeric endonuclease targeted to NotI recognition site. Protein Eng Des Sel Zhang, P., Bao, Y., Higgins, L.and Xu, S-Y.
2011 Cyclophosphamide Perturbs Cytosine Methylation in Jurkat-T Cells through LSD1-Mediated Stabilization of DNMT1 Protein. Chem.Res.Toxicol. Zhang, J., Yuan, B., Zhang, F., Xiong, L., Pradhan, S.and Wang, Y.
2011 Cyclophosphamide perturbs cytosine methylation in jurkat-T Cells through LSD1-mediated stabilization of DNMT1 Protein Chem. Res. Toxicol. Zhang, J. et al.
2015 Small RNA-mediated DNA (cytosine-5) methyltransferase 1 inhibition leads to aberrant DNA methylation Nucleic Acids Res Zhang, G., Esteve, P.O., Chin, H.G., Terragni, J., Dai, N., Correa, I.R. Jr. and Pradhan, S.
2015 Mammalian DNA (cytosine-5) methyltransferase mechanisms and RNA-mediated inhibition for future therapies. Epigenetics Diagnostic Therapy Zhang, G., Esteve, P.O., Chin, H.G. and Pradhan, S
2015 Mammalian DNA (cytosine-5) methyltransferase mechanisms and RNA-mediated inhibition for future therapies. Epigenetics Diagnostic Therapy Zhang, G., Esteve, P.O., Chin, H.G. and Pradhan, S
2014 Mammalian epigenetic mechanisms IUBMB Life Zhang, G. and Pradhan, S.
1993 The M.AluI DNA-(cytosine C5)-methyltransferse has an unusually large, partially dispensable, variable region. Nucl.Acids Res. Zhang, B., Tao, T., Wilson, G.G., and Blumenthal, R.M.
2011 Fluorescent site-specific labeling of Escherichia coli expressed proteins with Sfp phosphopantetheinyl transferase Methods Mol.Biol. Zhang, A., Sun, L., Buswell, J., Considine, N., Ghosh, I., Masharina, A., Noren, C.and Xu, M.Q.
2001 Construction of a mini-intein fusion system to allow both direct monitoring of soluble protein expression and rapid purification of target proteins. Gene Zhang, A., Gonzales, S.M., Cantor, E.J.and Chong, S.
2005 Productive interaction of chaperones with substrate protein domains allows correct folding of the downstream GFP domain. Gene Zhang, A., Cantor, E.J., Barshevsky, T.and Chong, S.
2015 High-density interspecific genetic maps of kiwifruit and the identification of sex-specific markers. DNA Res. Zhang Q, Liu C, Liu Y, VanBuren R, Yao X, Zhong C, Huang H.
2015 Identification of a Conserved Linear B-Cell Epitope of Streptococcus dysgalactiae GapC Protein by Screening Phage-Displayed Random Peptide Library PLoS One Zhang L., Zhang H., Fan Z., Zhou X., Yu L., Sun H., Wu Z., Yu Y., Song B., Ma J., Tong C., Wang X., Zhu Z., Cui Y.
2010 Covalent quantum dot receptor linkage via the acyl carrier protein for single-molecule tracking, internalization, and trafficking studies BioTechniques Zelman-Femiak, M. et al.
1989 Use of Degenerate Oligonucleotides for Amplification of the nifH Gene from the Marine Cyanobacterium Trichodesmium thiebautii. Appl.Environ.Microbiol., Zehr, J.P., and McReynolds, L.A.
2002 Inhibition of poly(ADP-ribosyl)ation induces DNA hypermethylation: a possible molecular mechanism. FASEB J. Zardo, G., Reale, A., Passananti, C., Pradhan, S., Bountempo, S., DeMatteis, G., Adams, R.L.P.and Caiafa, P.
Identification of a cardiac specific protein transduction domain by in vivo biopanning using a M13 phage peptide display library in mice PLoS One Zahid, M. et al.
2016 One-pot system for synthesis, assembly, and display of functional single-span membrane proteins on oil-water interfaces Proc. Natl Acad Sci USA Yunker, P.J., Asahara, H., Hung, K.C., Landry, C., Arriaga, L.R., Akartuna, I., Heyman, J., Chong, S., Weitz, D.A.
2008 Template-Independent DNA Polymerases. Curr.Protoc.Mol.Biol. Yue, D., Tabor, S.and Nichols, N.M.
2000 One step purification of recombinant human Neurotrophic factor-3 with the splicing function of intein. Chin.J.Biochem.Mol.Biol. Yuan, J.M., Li, Z.Y., Wang, Y.M.and Xu., M.-Q.
2011 6-Thioguanine Reactivates Epigenetically Silenced Genes in Acute Lymphoblastic Leukemia Cells by Facilitating Proteasome-mediated Degradation of DNMT1 Cancer Res. Yuan, B., Zhang, J., Wang, H., Xiong, L., Cai, Q., Wang, T., Jacobsen, S., Pradhan, S. andd Wang, Y.
2011 High-throughput analysis of the mutagenic and cytotoxic properties of DNA lesions by next-generation sequencing Nuc. Acids Res. Yuan, B., Wang, J., Cao, H. et al
2015 The RpoE Stress Response Pathway Mediates Reduction of the Virulence of Enteropathogenic Escherichia coli by Zinc. Appl Environ Microbiol Yuan Xue, Jossef Osborn, Anand Panchal, Jay L Mellies High-Fidelity PCR
2010 Gene synthesis of the bovine prochymosin gene and high-level expression in Kluyvermyces lactis Sheng Wu Gong Cheng Xue Bao Yuan W, et al.
2017 Macrocycle peptides delineate locked-open inhibition mechanism for micoorganism phosphoglycerate mutases Nat. Commun. Yu, H., Dranchak, P., Li, Zhiru, MacArthur, R., Munson, M.S., Mehzabeen, N., Baird, N.J., Battalie, K.P., Ross, D., Lovell, Sc., Carlow, C.K.S., Suga, H., Inglese, J.
2010 Expressed protein ligation for the preparation of fusion proteins with cell penetrating peptides for endotoxin removal and intracellular delivery Biochim Biophys Acta Yu, H. H., et. al.
2010 Secretory production of recombinant proteins in Escherichia coli Recent Patents on Biotechnology Yoon, S.H., Kim, S.K., and Kim J.F.
2015 Activation and enhancement of Fredericamycin A production in deepsea-derived Streptomyces somaliensis SCSIO ZH66 by using ribosome engineering and response surface methodology. Microb Cell Fact Yonghe Zhang, Huiming Huang, Shanshan Xu, Bo Wang, Jianhua Ju, Huarong Tan, Wenli Li High-Fidelity PCR
2014 Structural basis for Klf4 recognition of methylated DNA Nucleic Acids Research Yiwei Liu, Yusuf Olatunde Olanrewaju, Yu Zheng, Hideharu Hashimoto, Robert M. Blumenthal, Xing Zhang, Xiaodong Cheng
2005 Co-translational involvement of the chaperonin GroEL in the folding of newly translated polypeptides J. Biol. Chem. Ying, B.W., Taguchi, H., Kondo, M. and Ueda, T.
2014 A restriction enzyme-powered autonomous DNA walking machine: its application for a highly sensitive electrochemiluminescence assay of DNA Nanoscale Ying Chen, Yun Xiang, Ruo Yuan, Yaqin Chai
2005 Single-cell FRET imaging of transferrin receptor trafficking dynamics by Sfp-catalyzed, site-specific protein labeling Chem. Biol Yin J. et al.
2005 Labeling proteins with small molecules by site-specific posttranslational modification J Am Chem Soc Yin J. et al.
2016 A microbiome DNA enrichment method for next-generation sequencing sample preparation Curr Prot Mol Biol. Yigit, E., Feehery, G.R., Langhorst, B.W., Stewart, F.J., Dimalanta, E.T., Pradhan, S., Slako, B., Gardner, A.F., McFarland, J., Sumner, C., Davis, T.B.
2003 Generation of the R2 subunit of ribonucleotide reductase by intein chemistry: insertion of 3-nitrotyrosine at residue 356 as a probe of the radical initiation process Biochemistry Yee, C.S., et al.
2017 Complete genome and methylome sequences of Salmonella enterica subsp. enterica Serovars Typhimurium, Saintpaul, and Stanleyville from the SARA/SARB collection Genome Announce Yao, K., Roberts, R.J., Allard, M.W., Hoffmann, M.
2016 Complete genome and methylome sequences of two Salmonella Genome Announcements Yao, K., Muruvanda, T., Roberts, R.J., Payne, J., Allard, M.W., Hoffmann, M.
2016 Complete Genome and Methylome Sequences of Salmonella enterica subsp. enterica Serovar Panama (ATCC 7378) and Salmonella enterica subsp. enterica Serovar Sloterdijk (ATCC 15791). Genome Announc. Yao, K., Muruvanda, T., Roberts, R.J., Payne, J., Allard, M.W. and Hoffmann, M.
2004 Structural characterization and comparative phylogenetic analysis of E.coli HemK, a protein (N5)-glutamine methyltransferase. Mol.Microbiol. Yang, Z., Shipman, L., Zhang, M., Anton, B., Roberts, R.J.and Cheng, X.
2005 Structure of HinP1I endonuclease reveals a striking similarity to the monomeric restriction enzyme MspI. Nucl.Acids.Res. Yang, Z., Horton, J.R., Maunus, R., Wilson, G.G., Roberts, R.R.and Cheng, X.
2017 Methods for structural and functional analyses of intramembrane prenyltransferases in the UbiA superfamily Methods Enzymol Yang, Y., Ke, N., Liu, S., Li, W.
2009 The Kruppel-like zinc finger protein Glis3 directly and indirectly activates insulin gene transcription Nucleic Acids Res. Yang, Y., Chang, B.H., Samson, S.L., Li, M.V., Chan, L.
2009 The complete genome of Teredinibacter turnerae T7901: an intracellular endosymbiont of marine wood-boring bivalves (shipworms). PLoS ONE Yang, J.C., Madupu, R., Durkin, A.S., Ekborg, N.A., Pedamallu, C.S., Hostetler, J.B., Radune, D., Toms, B.S., Henrissat, B., Coutinho, P.M., Schwarz, S., Field, L., Trindade-Silva, A.E., Soares, C.A., Elshahawi, S., Hanora, A., Schmidt, E.W., Haygood, M.G., Posfai, J., Benner, J., Madinger, C., Nove, J., Anton, B., Chaudhary, K., Foster, J., Holman, A., Kumar, S., Lessard, P.A., Luyten, Y.A., Slatko, B., Wood, N., Wu, B., Teplitski, M., Mougous, J.D., Ward, N., Eisen, J.A., Badger, J.H.and Distel, D.L.
2015 TonEBP modulates the protective effect of taurine in ischemia-induced cytotoxicity in cardiomyocytes Cell Death Dis. Yang YJ, Han YY, Chen K, Zhang Y, Liu X, Li S, Wang KQ, Ge JB, Liu W, Zuo J.
2015 Production of a Highly Protease-Resistant Fungal α-Galactosidase in Transgenic Maize Seeds for Simplified Feed Processing Sci Rep Yang W., Zhang Y., Zhou X., Zhang W., Xu X., Chen R., Meng Q., Yuan J., Yang P., Yao B.
2016 Genetic Divergence between Camellia sinensis and Its Wild Relatives Revealed via Genome-Wide SNPs from RAD Sequencing. PLoS One. Yang H, Wei CL, Liu HW, Wu JL, Li ZG, Zhang L, Jian JB, Li YY, Tai YL, Zhang J, Zhang ZZ, Jiang CJ, Xia T, Wan XC.
2016 Development of a universal and simplified ddRAD library preparation approach for SNP discovery and genotyping in angiosperm plants. Plant Methods. Yang GQ, Chen YM, Wang JP, Guo C, Zhao L, Wang XY, Guo Y, Li L, Li DZ, Guo ZH.
2013 RNAi triggered by specialized machinery silences developmental genes and retrotransposons Nature Yamanaka, S., Mehta, S., Reyes-Turcu, F.E., Zhuang, F., Fuchs, R.T., Rong, Y., Robb, G.B. and Grewal, S.I.
2012 RNAi triggered by specialized machinery silences developmental genes and retrotransposons Nature Yamanaka, S., Mehta, S., Reyes-Turcu, F.E., Zhuang, F., Fuchs, R.T., Rong, Y., Robb, G.B. and Grewal, S.I.
2011 Identification of a chitin-induced small RNA that regulates translation of the tfoX gene, encoding a positive regulator of natural competence in Vibrio cholerae J Bacteriol. Yamamoto, S., Izumiya, H., Mitobe, J., Morita, M., Arakawa, E., Ohnishi, M. and Watanabe, H.
2017 Serotyping dengue virus with isothermal amplification and a portable sequencer Scientific Reports Yamagishi, J., et al.