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    YearTitleJournalAuthorsApplication(s)
    2007Design and Use of Ligated Phophoproteins: Study of Protein Phosphatases by Dot Blot Array, ELISA and Western Blot Analysis.MethodsSun, L., Ghosh, I., Barshevsky, T., Kochinyanm, S.and Xu, M.
    2010Design of a potent D-peptide HIV-1 entry inhibitor with a strong barrier to resistanceJ. Virol.Welch, B.D. et al.
    2007Design, preparation and use of ligated phosphoproteins: A novel approach to study protein phosphatases by dot blot array, ELISA and Western blot assaysMethodsSun, L., et al.
    2010Designed semisynthetic protein inhibitors of ub/ubl e1 activating enzymesJ. Am. Chem. Soc. Lu, X., et al.
    1997Detection and Isolation of Recombinant Protein Based on Binding Affinity ReporterMethods Mol.Biol.Riggs, P.
    2009Detection of ligand-induced CNTF receptor dimers in living cells by fluorescence cross correlation spectroscopyBiochim. Biophys. Acta.  Neugart F. et al.
    1997Detection of Loa loa-specific DNA in Blood from Occult-Infected Individuals.Exp.Parasitol.Toure, F.S., Bain, O., Nerrienet, E., Millet, P., Wahl, G., Toure, Y., Doumbo, O., Nicolas, L., Georges, A.L., McReynolds, L.A., and Egwang, T.G.
    2012Detection of miRNAs with a nanopore single-molecule counterExpert Rev Mol Diagn.Gu, L.Q., Wanunu, M., Wang, M.X., McReynolds, L. and Wang, Y.
    2012Detection of miRNAs with a nanopore single-molecule counterExpert Rev. Mol. Diagn.Gu, L.Q., et al.
    2001Detection of Serum IgG Antibodies Specific for Wolbachia Surface Protein in Rhesus Monkeys Infected with Brugia malayi.J Infectious Diseases Punkosdy, G.A., Dennis, V.A., Lasater, B.L., Tzertzinis, G.foster, J.M.and Lammie, P.J.
    1999Determinants of nucleotide sugar recognition in an archaeon DNA polymerase.Nuc.Acids Res.Gardner, A.F.and Jack, W.E.
    1998Determination of Certain Agarose-Immobilized Ligands by Use of Perchloric Acid.Biochromatography Wilkie, S.D.and Landry, D.
    2007Determination of silencing potency of synthetic and RNase III-generated siRNA using a secreted luciferase assay Biotechniques Morlighem, J.E., Petit, C. and Tzertzinis, G.
    2007Determination of silencing potency of synthetic and RNase III-generated siRNA using a secreted luciferase assay.BioTechniquesMorlighem, J-E., Petit, C.and Tzertzinis, G.
    2007Determination of silencing potency of synthetic and RNase Ill-generated siRNA using a secreted luciferase assay.BiotechniquesMorlighem, J.E., Petit, C and Tzertzinis, G.
    2001Determination of Wolbachia Genome Size by Pulsed-Field Gel Electrophoresis.J.Bacteriol.Sun, L.V., Foster, J.M., Tzertzinis, G., Ono, M., Bandi, C., Slatko, B.E.and O'Neill, S.L.
    2008Development of a dual-luciferase reporter system for in vivo visualization of MicroRNA biogenesis and posttranscriptional regulationNucl. Med.Lee, J.Y., Kim, S., Hwang do, W., Jeong, J.M.,Chung, J.K., Lee, M.C., Lee, D.S.J.
    2005Development of a minimal cell-free translation system for the synthesis of presecretory and integral membrance proteinsBiotechnol, Prog.Kuruma, Y., Nishiyama, K., Shimizu, Y., Muller, M and Ueda, T.
    2002Development of a Positive Genetic Selection System for Inhibition of Protein Splicing Using Mycobacterial Inteins in Escherichia coli DNA Gyrase Subunit A.J.Mol.Micro.Biotechnol.Adam, E.and Perler, F.B.
    2015Development of a Rapid, Simple Method for Detecting Naegleria fowleri Visually in Water Samples by Loop-Mediated Isothermal Amplification (LAMP).PLoS OneAongart Mahittikorn, Hirotake Mori, Supaluk Popruk, Amonrattana Roobthaisong, Chantira Sutthikornchai, Khuanchai Koompapong, Sukhontha Siri, Yaowalark Sukthana, Duangporn NacapunchaiIsothermal Amplification
    2011Development of SNAP-Tag Fluorogenic Probes for Wash-Free Fluorescence Imaging.Chembiochem.Sun, X., Zhang, A., Baker, B., Sun, L., Howard, A., Buswell, J., Maurel, D., Masharina, A., Johnsson, K., Noren, C.J., Xu, M-Q and Corrêa, I.R., Jr.
    2010Development of SNAP-tag-mediated live cell labeling as an alternative to GFP in Porphyromonas gingivalisFEMS Immunol. Med. Microbiol.  Nicolle O. et al.
    2014Development of VHH Antibodies against Dengue Virus Type 2 NS1 and Comparison with Monoclonal Antibodies for Use in Immunological DiagnosisPLoS OneFatima A, Wang H, Kang K, Xia L, Wang Y, Ye W, Wang J, Wang X.Phage Display
    2015Developmental exposure to 2,3,7,8-tetrachlorodibenzo-p-dioxin alters DNA methyltransferase (dnmt) expression in zebrafish (Danio rerio)Toxicol Appl PharmacolAluru N, Kuo E, Helfrich LW, Karchner SI, Linney EA, Pais JE, Franks DG
    2014DevR (DosR) mimetic peptides impair transcriptional regulation and survival of Mycobacterium tuberculosis under hypoxia by inhibiting the autokinase activity of DevS sensor kinaseBMC MicrobiolKaur K, Taneja NK, Dhingra S, Tyagi JSPhage Display
    2012Diagnosis of Brugian Filariasis by Loop-Mediated Isothermal AmplificationPLOS Negl Trop DisPoole, C., Tanner, N. Zhang, Y., Evans, T. and Carlow, C.
    2012Diagnosis of brugian filariasis by loop-mediated isothermal amplification.PLoS Negl Trop Dis.Poole CB, Zhang Y, Evans TC Jr., Carlow CK
    1995Differential recognition of microfilarial chitinase, a transmission-blocking vaccine candidate antigen, by sera from patients with Brigian and Bancroftian filariasis.Am.J.Trop.Med.Hyg.Dissanayake, S., Perler, F.B., Xu, M., Southworth, M.W., Yee, C.K., Wang, S., Dreyer, G., Watawana, L., Kurniawan, L., Fuhrman, J.A., and Piessens, W.F.
    2008Diffusion and directed movement: in vitro motile properties of fission yeast kinesin-14 Plk1 J. Biol. Chem.  Fururta, K. et al.
    2013Digital droplet PCR for rapid quantification of donor DNA in the circulation of transplant recipients as a potential universal biomarker of graft injury.Clin. Chem.Beck J, Bierau S, Balzer S, Andag R, Kanzow P, Schmitz J, Gaedcke J, Moerer O, Slotta JE, Walson P, Kollmar O, Oellerich M, Schütz E.
    2006Direct interaction between DNMT1 and G9a coordinates DNA and histone methylation during replication.Genes & Devel.Esteve, P.O., Chin, H.G., Smallwood, A., Feehery, G.R., Gangisette, O., Karpf, A.R., Carey, M.F.and Pradhan, S.
    2009Direct observation of the nanoscale dynamics of membrane lipids in a living cellNature Eggeling C. et al.
    1994Direct selection of binding proficient/catalytic deficient variants of BamHI endonuclease.Nucl.Acids.Res.Dorner, L.F., and Schildkraut, I.
    2008Direct site-selective covalent protein immobilization catalyzed by a phosphopantetheinyl transferaseJ. Am. Chem. Soc. Wong L. S. et al.
    2006Directed evolution of O6-alkylguanine-DNA alkyltransferase for applications in protein labelingProt. Eng. Des. Sel. Gronemeyer T. et al.
    2003Directed evolution of O6-alkylguanine-DNA alkyltransferase for efficient labeling of fusion proteins with small molecules in vivoChem. Biol.  Juillerat A. et al.
    2002Directed Evolution of Restriction Endonuclease BstYI to Achieve Increased Substrate Specificity.J.Mol.Biol.Samuelson, J.C.and Xu, S.Y.
    2002Dirofilaria immitis encodes Di-nhr-7, a putative orthologue of the Drosophila ecdysone-regulated E78 gene.Mol.Biochem.Parasitol.Crossgrove, K., Laudet, V.and Maina, C.V.
    1987Dirofilaria immitis: Genomic Complexity and Characterication of a Structural Gene.Molecular Paradigms for Eradicating Helminthic ParasitesMaina, C.V., Grandea, A.G.I., Le, T.K.T., Nur, A., Williams, S.A., and McReynolds, L.A.
    2001Discovery and distribution of super-integrons among pseudomonads.Mol.Microbiol.Vaisvila, R., Morgan, R.D., Posfai, J.and Raleigh, E.A.
    1997Discovery and Uses of Novel GlycosidasesTechniques in GlycobiologyWong-Madden, S.T., Landry, D., and Guthrie, E.P. Glycobiology
    1998Discovery and Uses of Novel GlycosidasesTechniques in GlycobiologyWong-Madden, S.T., Landry, D., and Guthrie, E.P.
    2007Discovery of natural nicking endonucleases Nb.BsrDI and Nb.BtsI and engineering of top-strand nicking variants from BsrDI and BtsI.Nucl.Acids.Res.Xu, S.Y.,  Zhu, Z., Zhang, P., Chan, S.H., Samuelson, J., Xiao, J., Ingalls D.and Wilson, G.
    2010Discrimination of methylcytosine from hydroxymethylcytosine in DNA molecularJ. Am. Chem. Soc.Wanunu, M. et al.
    2010Discrimination of Methylcytosine from Hydroxymethylcytosinein DNA Molecular.J Am Chem Soc Wanunu, M., Cohen-Karni, D., Johnson, R.R., Fields, L., Benner, J., Peterman, N., Zheng, Y., Klein, M.L., Drndic, M.
    2011Disruption of PMR1 in Kluyveromyces lactis improves secretion of calf prochymosinJ. Sci. Food Agric.Feng, Z., et al.
    2008Disruption of the OCH1 and MNN1 genes decrease N-glycosylation on glycoprotein expressed inKluyveromyces lactisJ. Biotechnol. Liu, B., Gong, X., Chang, S., Yang, Y., Song, M., Duan, D., Wang, L., Ma, Q., and Wu, J.
    1995Disruption of the target G-C base-pair by the HhaI methyltransferase.GeneKlimasauskas, S., and Roberts, R.J.
    2000Dissecting the Chemistry of Protein Splicing and its ApplicationsAngew.Chem.Int.Ed.Noren, C.J., Wang, J.and Perler, F.B.
    2015Dissecting the molecular properties of prokaryotic flotillinsPLoS OneJuri Nio Bach, Marc BramkampSNAP Surface, SNAP Cell
    2007Distribution plasticity of the human estrogen receptor alpha in live cells: distinct imaging of consecutively expressed receptorsJ. Mol. Biol. Pick H. et al.
    2012Disulfide-bonded protein expression in E. coliGenetic Engineering & Biotechnology NewsSamuelson, J.C., Causey, T.B., and Berkmen, M.
    2007Diversifying selection and host adaptation in two endosymbiont genomes.BMC Evolutionary BiologyBrownlie, J.C., Adamski, M., Slatko, B.and McGraw, E.A.
    2014Diversity and Expression of MicroRNAs in the Filarial Parasite, Brugia malayi.PLoS OnePoole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA.
    2005DNA -binding activity of LndI protein and temporal expression of the gene that upregulates landomycin E production in Streptomyces globisporus 1912Microbiology Rebets, Y., et al.
    2002DNA Binding and Recognition by the IIs Restriction Endonuclease MboII.J.Biol.Chem.Soundararajan, M., Chang, Z., Morgan, R.D., Heslop, P.and Connolly, B.A.
    2009DNA Cloning and Engineering by Uracil Excision.Curr.Protoc.Mol.Biol.Bitinaite, J.and Nichols, N.M.
    1997DNA containing 4'-thio-2' deoxycytidine inhibits methylation by HhaI methyltransferase.Nucl.Acids Res.Kumar, S., Horton, J.R., Jones, G.D., Walker, R.T., Roberts, R.J., and Cheng, X.
    2008DNA damage in preserved specimens and tissue samples: a molecular assessment.Frontiers in Zoology Zimmermann, J., Hajibabaei, M., Blackburn, D.C., Hanken, J., Cantin, E., Posfai, J.and Evans, T.C.
    2006DNA Damage-induced Down-regulation of Human Cdc25C and Cdc2 is Mediated by Cooperation between p53 and Maintenance DNA (Cytosine 5) Methyltransferase 1.J Biol Chem.Le Gac, G., Esteve, P., Ferec, C.and Pradhan, S.
    2008DNA distortion and specificity in a sequence-specific endonuclease.J.Mol.Biol.Babic, A.C., Little, E.J., Manohar, V.M., Bitinaite, J., Horton, N.C.
    1984DNA modification methylases: New uses in the manipulation of DNA.BioTechniquesChrist, C., and Nelson, M.
    2006DNA nicking by HinP1I endonuclease: bending, base flipping and minor groove expansion.Nucl.Acids.Res.Horton, J.R., Zhang, X., Maunus, R., Yang, Z., Wilson, G.G., Roberts, R.J.and Cheng, X.
    2008DNA Repair Enzymes.Curr.Protoc.Mol.Biol.Evans, T.C., Jr.and Nichols, N.M.
    2003DNA -repair protein hHR23a alters its protein structure upon binding proteasomal subunit S5aProc. Natl. Acad. Sci. USA Walters, K.J., et al.
    1994DNA sequencingCurr.Protoc.Mol.Biol.Slatko, B., Heinrich, P., Nixon, B.T., Eckert, R.L., Albright, L., and Ausubel, F.
    2013DNMT1-interacting RNAs block gene-specific DNA methylationNatureAnnalisa Di Ruscio, Alexander K. Ebralidze, Touati Benoukraf, Giovanni Amabile, Loyal A. Goff, Jolyon Terragni, Maria Eugenia Figueroa, Lorena Lobo De Figueiredo Pontes, Meritxell Alberich-Jorda, Konstantin K. Ebralidze, Sriharsa Pradhan, John L. Rinn, Daniel G. Tenen
    1998Does Bcg1, a Unique Restriction Endonuclease, Require Two Recognition Sites for Cleavage?J Biol.Chem Kong, H., and Smith, C.L.
    2010D-peptide inhibitors of the p53-MDM2 interaction for targeted molecular therapy of malignant neoplasmsProc. Natl. Acad. Sci.Liu, M. et al.
    2007Draft Genome of the Filarial Parasite Brugia malayi.ScienceGhedin E, Wang S, Spiro D, Caler E, Zhao Q, Crabtree J, Allen JE, Delcher AL, Guiliano DB, Miranda-Saavedra D, Angiuoli SV, Creasy T, Amedeo P, Haas B, El-Sayed NM, Wortman JR, Feldblyum T, Tallon L, Schatz M, Shumway M, Koo H, Salzberg SL, Schobel S, Pertea M, Pop M, White O, Barton GJ, Carlow CK, Crawford MJ, Daub J, Dimmic MW, Estes CF, Foster JM, Ganatra M, Gregory WF, Johnson NM, Jin J, Komuniecki R, Korf I, Kumar S, Laney S, Li BW, Li W, Lindblom TH, Lustigman S, Ma D, Maina CV, Martin DM, McCarter JP, McReynolds L, Mitreva M, Nutman TB, Parkinson J, Peregrín-Alvarez JM, Poole C, Ren Q, Saunders L, Sluder AE, Smith K, Stanke M, Unnasch TR, Ware J, Wei AD, Weil G, Williams DJ, Zhang Y, Williams SA, Fraser-Liggett C, Slatko B, Blaxter ML, Scott AL.
    1989DrdI, a unique restriction endonuclease from Deinococcus radiodurans which recognizes 5'GACN6GTC3'.Nucl.Acids Res.Polisson, C., and Morgan, R.D.
    1998Drosophila Hormone Receptor 38 Functions in Metamorphosis: A Role in Adult Cuticle Formation.GeneticsKozlova, T., Pokholkova, G.V., Tzertzinis, G., Sutherland, J.D., Zhimulev, I.F.and Kafatos, F.C.
    2012Drugs and targets to perturb the symbiosis of Wolbachia and filarial nematodesParasitic Helminths: Targets, Screens, Drugs and VaccinesTaylor, M.J., Ford, L, Ford, Hoerauf, A., Pfarr, K., Foster, J.M., Kumar, S. and Slatko, B.E.
    2012Dual binding of Chromomethylase Domains to H3K9me2-Containing Nucleosomes Directs DNA Methylation in Plants.CellXuehua Zhong, X., Du, J., Bernatavichute, Y.V., Stroud, H., Feng, S., Caro, E., Vashisht, A.A., Chin, H.G., Terragni, J., Tu, A., Hetzel, J., Wohlschlegel, J.A., Pradhan, S., Patel, D.J. and Jacobsen, S.E.
    2004Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with Chromomethylase3.EMBO J.Lindroth, A.M., Shultis, D., Jasencakova, Z., Fuchs, J., Johnson, L., Scubert, D., Patnaik, D., Pradhan, S., Goodrich, J., Schubert, Il, Jenuwein, T., Khorasanizadeh, S.and Jacobsen, S.E
    2007Dual-reporter assay using two secreted luciferase genes Biotechniques Wu, C., Suzuki-Ogoh, C. and Ohmiya, Y.
    2007Dual-reporter assay using two secreted luciferase genesBiotechniquesWu, C., Suzuki-Ogoh, C., Ohmiya, Y.
    2015Dynamic caveolae exclude bulk membrane proteins and are required for sorting of excess glycosphingolipidsNat CommunElena Shvets, Vassilis Bitsikas, Gillian Howard, Carsten Gram Hansen, Benjamin J NicholsSNAP Surface
    2007Dynamic developmental elaboration of N-linked glycan complexity in the Drosophila melanogaster embryoJ. Biol. Chem. Aoki, K., Perlman, M., Lim, J.M., Cantu, R., Wells, L., Tiemeyer, M.
    2011Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiationNature Ficz, G., et al.
    2009E.coli RNase III(E38A) generates discrete-sized products from long dsRNA.RNAXiao, J., Feehery, C.E., Tzertzinis, G.and Maina, C.V.
    1988EarI, a restriction endonuclease from Enterobacter aerogenes which recognizes 5'CTCTTC3'.Nucl.Acids Res.Polisson, C., and Morgan, R.D.
    2009EcR-B1 and Usp nuclear hormone receptors regulate expression of the VM32E eggshell gene during Drosophila  oogenesis.Dev.Biol.Bernardi, F., Romani, P., Tzertzinis, G., Gargiulo, G.and Cavaliere V.
    2009Educational Outreach - Discover the Microbes Within!BioTechniquesWeiner, M.P.and Slatko, B.(eds.)
    2009Educational Outreach - Give Students a Taste for Molecular Biology and Tasting PTC: A New Lab with an Old Flavor.BioTechniquesWeiner, M.P.and Slatko, B.(eds.)
    1999Effect of CWG methylation on expression of plant genes.Biochem J.Pradhan, S., Urwin, N.A., Jenkins, G.I.and Adams, R.L.
    2009Effect of temperature-shift strategy on recombinat chymosin of Kluyveromyces LactisHeilongjiang Animal Science and Veterinary MedicineFeng, Z., et al
    2012Efficient and sequence-independent replication of DNA containing a third base pair establishes a functional six-letter genetic alphabet.Proc. Natl. Acad. Sci. USAMalyshev, D.A., Dhami, K., Quach, H.T., Lavergne, T., Ordoukhanian, P., Torkamani, A. and Romesberg, F.E.
    2013Efficient and specific gene knockdown by small interfering RNAs produced in bacteriaNat Biotechnol.Huang, L., Jin, J., Deighan, P., Liner, E., McReynolds, L. and Lieberman, J.
    Efficient DNA ligation in DNA-RNA hybrid helices by Chlorella
    2014Efficient DNA ligation in DNA–RNA hybrid helices by Chlorella virus DNA ligaseNucleic Acids ResearchGregory J. S. Lohman, Yinhua Zhang, Alexander M. Zhelkovsky, Eric J. Cantor, Thomas C. Evans Jr.
    2015Efficient expression of full-length antibodies in the cytoplasm of engineered bacteriaNat Commun.Robinson MP, Ke N, Lobstein J, Peterson C, Szkodny A, Mansell TJ, Tuckey C, Riggs PD, Colussi PA, Noren CJ, Taron CH, DeLisa MP, Berkmen M.
    2015Efficient expression of full-length antibodies in the cytoplasm of engineered bacteriaNature Communications Robinson, M.-P., Ke, N., Lobstein, J., Peterson, C., Szkodny, A., Mansell, T.J., Tuckey, C., Riggs, P.D., Colussi, P.A., Noren, C.J., Taron, C.H., Delisa, M.P., Berkmen, M.
    2013Efficient genome editing in Caenorhabditis elegans by CRISPR-targeted homologous recombinationNucleic Acids ResChen C, Fenk LA, de Bono MGibson Assembly®
    2011Efficient in vivo selection of a novel tumor-associated peptide from a phage displayMoleculesVeleva, A.N. et al.
    2008Efficient interval partitioning approach for global optimization.Journal of Global OptimizationPedamallu, C.S., Ozdamar, L., Csendes, T.and Vinko, T.
    2002Efficient isolation of targeted Caenorhabditis elegans deletion strains using highly thermostable restriction endonucleases and PCR.Nucl.Acids.Res.Wei, A., Yuan, A., Fawcett, G., Butler, A., Davis, T., Xu, S.Y.and Salkoff, L.
    2014Elimination of inter-domain interactions increases the cleavage fidelity of the restriction endonuclease DraIIIProtein CellZhuo W, Lai X, Zhang L, Chan SH, Li F, Zhu Z, Yang M, Sun D
    2016Emerging pathogens of gilthead seabream: characterisation and genomic analysis of novel intracellular β-proteobacteria.ISME J.Seth-Smith, M.B.P. et al.
    2006Enabling Glycosyltransferase Evolution: A Facile Substrate-Attachment Strategy for Phage-Display Enzyme Evolution.Chembiochem.Love K.R., Swoboda J.G., Noren C.J.and Walker, S.