Publications

Publications

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YearTitleJournalAuthorsApplication(s)
1988Cloning Type II restriction and modification genes.GeneLunnen, K.D., Barsomian, J.M., Camp, R.R., Card, C.O., Chen, S.Z., Croft, R., Looney, M.C., Meda, M.M., Moran, L.S., Nwankwo, D.O., Slatko, B.E., Van Cott, E.M., and Wilson, G.G.
1994Cloning, analysis and expression of the HindIII R-M-encoding genes.GeneNwankwo, D.O., Moran, L.S., Slatko, B.E., Waite-Rees, P.A., Dorner, L.F., Benner, J.S., and Wilson, G.G.
1990Cloning, characterization, and expression in Escherichia coli of the gene coding for the CpG DNA methylase from Spiroplasma sp.strain MQ1(M.SssI).Nucl.Acids Res.Renbaum, P., Abrahamove, D., Fainsod, A., Wilson, G.G., Rottem, S., and Razin, A.
1998Cloning, expression and characterization of a new filarial cyclophilin.Mol.Biochem.Parasitol.Hong, X., Ma, D.and Carlow, C.K.S.
2002Cloning, Expression and Immunization of the new antigen gene Sj-Ts4 of Schistosoma japonicum.Acta Biochimica et Biophysica Sinica Zhou, D.-M., Yi, X.-Y., Zeng, X.-F., Wang, M., Cai, C., Wang, Q.-L., Zhang, S.-K., McReynolds, L.
2000Cloning, Expression and Purification of a Thermostable Nonhomodimeric Restriction Enzyme, BslIJ.Bacteriol.Hsieh, P.-C., Xiao, J.-P., O'Loane, D.and Xu, S.-Y.
1996Cloning, expression and sequence analysis of the SphI restriction-modification system.GeneGuthrie, E.P., Quinton-Jager, T., Moran, L.S., Slatko, B.E., Kucera, R.B., Benner, J.S., Wilson, G.G., and Brooks, J.E.
1988Cloning, purification and characterization of the HincII and HindII methyltransferases from Haemophilus influenzae.GeneRees, P.A., Nwankwo, D.O., Wilson, G.G., and Benner, J.S.
1988Cloning, purification and characterization of the M.NdeI methyltransferase from Neisseria denitrificansGeneSilber, K.R., Polisson, C., Rees, P.A., and Benner, J.S.
1987Cloning, sequencing and expression of the TaqI restriction-modification system.Nucl.Acids Res.Slatko, B.E., Benner, J.S., Jager-Quinton, T., Moran, L.S., Simcox, T.G., VanCott, E.M., and Wilson, G.G.
1993Cloning, sequencing and overexpressing the NaeI restriction endonuclease gene from Nocardia aerocolonigenesJ Cell BiochemTaron, C.H., Van Cott, E.M., Wilson, G.G., Moran, L.S., Slatko, B.E., Hornstra, L.J., Benner, J.S., Kucera, R.B. and Guthrie, E.P.
1987Cloning, sequencing, in vivo promoter mapping, and expression in Escherichia coli of the gene for the HhaI methyltransferase.J.Biol.Chem.Caserta, M., Zacharias, W., Nwankwo, D., Wilson, G.G., and Wells, R.D.
2010Codon optimization of the calf prochymosin gene and its expression in Kluyveromyces lactisWorld J. Microbiol. Biotechnol.Feng, Z., et al.
2005Codon-optimized Gaussia luciferase cDNA for mammalian gene expression in culture and in vivoMol Ther.Tannous, B.A., Kim, D.E., Fernandez, J.L., Weissleder, R., Breakefield, X.O.
2005Codon-optimized Gaussia luciferase cDNA for mammalian gene expression in culture and in vivo Mol Ther. Tannous, B.A., Kim, D.E., Fernandez, J.L., Weissleder, R. and Breakefield, X.O.
2014Co-evolution between an Endosymbiont and Its Nematode Host: Wolbachia Asymmetric Posterior Localization and AP Polarity EstablishmentPLoS Negl Trop Dis Landmann F, Foster JM, Michalski ML, Slatko BE, Sullivan W
2003Coevolution of an aminoacyl-tRNA synthetase with its tRNA substratesProc. Natl. Acad. Sci. USASalazar, J.C., et al.
2010Cofactor requirement of HpyAV restriction endonuclease.PLoS ONEChan, S.H., Opitz, L., Higgins, L., O'loane, D.and Xu, S.Y.
1991Cofactor requirements of BamHI mutant endonuclease E77K and its suppressor mutants.J.Bacteriol.Xu, S.Y., and Schildkraut, I.
2014Cofactor-Independent Phosphoglycerate Mutase from Nematodes Has Limited Druggability, as Revealed by Two High-Throughput ScreensPLoS Negl Trop Dis.Crowther, G.J., Booker, M.L., He, M., Li, T., Raverdy, S., Novelli, J.F., He, P., Dale, N.R.G., Fife, A.M., Barker, R.H., Jr., Kramer, M.L., Van Voorhis, W.C., Carlow, C.K.S. and Wang, M-W.
2004Cofactor-independent Phosphoglycerate Mutase Has an Essential Role in Caenorhabditis elegans and Is Conserved in Parasitic Nematodes.J.Biol.Chem.Zhang, Y., Foster, J.M., Kumar, S., Fougere, M.and Carlow C.K.S.
2007Cofactor-independent phosphoglycerate mutase is an essential gene in procyclic form Trypanosoma brucei.J of Biological ChemistryDjikeng, A., Raverdy, S., Foster, J., Bartholomeu, D., Zhang, Y., El-Sayed, N.and Carlow, C.
2006Cofactor-independent Phosphoglycerate Mutase is an essential gene in procyclic form Trypanosoma brucei.Parasitol.Res.Djikeng, A., Raverdy, S., Foster, J., Bartholomeu, D., Zhang, Y., El-Sayed, N.and Carlow, C.
2014Colonization state influences the hemocyte proteome in a beneficial squid-Vibrio symbiosisMol Cell ProteomicsSchleicher, T.R., VerBerkmoes, N.C., Shah, M., Nyholm, S.V.
2011COMBREX – COMputational BRidges to EXperiments.Biochem.Soc.Trans.Roberts, R.J.
2011COMBREX: a project to accelerate the functional annotation of prokaryotic genomesNucleic Acids Res.Roberts, R.J., Chang, Y.C., Hu, Z., Rachlin, J.N., Anton, B.P., Pokrzywa, R.M., Choi, H.P., Faller, L.L., Guleria, J., Housman, G., Klitgord, N., Mazumdar, V., McGettrick, M.G., Osmani, L., Swaminathan, R., Tao, K.R., Letovsky, S., Vitkup, D., Segre, D., Salzberg, S.L., Delisi, C., Steffen, M. and Kasif, S.,
2016COMBREX-DB: An experiment centered database of protein function: knowledge, predictions and knowledge gaps. Nucl. Acids Res.Chang, Y.-C., Hu, Z., Rachlin, J., Anton, B.P., Kasif, S., Roberts, R.J. and Steffen, M.
1996Comparative analysis of expression of the SalI restriction-modification system in Escherichia coli and StreptomycesMol. Gen. Genet.Alvarez, M.A., Gomez, A., Gomez, P., Brooks, J.E., Rodicio, M.R.
2015Comparative Analysis of the Glycosylation Profiles of Membrane-Anchored HIV-1 Envelope Glycoprotein Trimers and Soluble gp140.J VirolGo E.P., Herschhorn A., Gu C., Castillo-Menendez L., Zhang S., Mao Y., Chen H., Ding H., Wakefield J.K., Hua D., Liao H.X., Kappes J.C., Sodroski J., Desaire H.
2011Comparative characterization of the PvuRts1I family and application in mapping genomic 5-hydroxymethylcytosine.Nucl.Acids Res.Wang, H., Guan, S., Quimby, A., Cohen-Karni, D., Pradhan, S., Wilson, G.G., Roberts, R.J., Zhu, Z.and Zheng, Y.
2011Comparative characterization of the PvuRts1I family of restriction enzymes and their application in mapping genomic 5-hydroxymethylcytosineNucleic Acids ResWang H, Guan S, Quimby A, Cohen-Karni D, Pradhan S, Wilson G, Roberts RJ, Zhu Z, Zheng Y
2010Comparative genomic hybridization of Bifidobacterium longum strains reveals broad conservation of milk utilization genes in subsp. infantisAppl. Environ. Microbiol. LoCascio, R.G., Desai, P., Sela, D.A., Weimer, B., and Mills, D.A.
2001Comparative genomics of the restriction-modification systems in Helicobacter pylori.Proc.Natl.Acad.Sci.USA Lin, L.F., Posfai, J., Roberts, R.J.and Kong, H.
2004Comparative Kinetics of Nucleotide Analog Incorporation by Vent DNA Polymerase.J.Biol.Chem.Gardner, A.F., Joyce, C.M.and Jack, W.E.
2016Comparative Methylome Analysis of the Occasional Ruminant Respiratory Pathogen Bibersteinia trehalosi.PLoS OneAnton, B.P., Harhay, G.P., Smith, T.P., Blom, J. and Roberts, R.J.
2015Comparative Population Genomics of African Montane Forest Mammals Support Population Persistence across a Climatic Gradient and Quaternary Climatic Cycles.PLoS One. Demos TC, Kerbis Peterhans JC, Joseph TA, Robinson JD, Agwanda B, Hickerson MJ.
2016Comparison of a new visual isothermal nucleic acid amplification test with PCR and skin snip analysis for diagnosis of onchocerciasis in humans.Mol Biochem Parasitol.Alhassan, Aa, Osei-Atweneboana, M.Y., Kyeremeh, K.F., Poole, C.B., Li, Z., Tettevi, E., Tanner, N.A. and Carlow, C.K.
2009Comparison of distinct protein isoforms of the receptor for advanced glycation end-products expressed in murine tissues and cell linesCell Tissue Res. Gefter, J.V., Shaufl, A.L., Fink, M.P., Delude, R.L. Glycobiology
2016Comparison of intraspecific, interspecific and intergeneric chloroplast diversity in Cycads.Sci Rep.Jiang, G.F. et al.
2015Comparison of loop-mediated isothermal amplification and real-time PCR for detecting Bordetella pertussis.J Med MicrobiolMohammad Reza Allahyar Torkaman, Kazunari Kamachi, Vajihe Sadat Nikbin, Masoumeh Nakhost Lotfi, Fereshteh ShahcheraghiIsothermal Amplification
2014Comparison of Subtypes of Listeria monocytogenes Isolates from Naturally Contaminated Watershed Samples with and without a Selective Secondary EnrichmentPLoS ONEGorski L, Walker S, Liang AS, Nguyen KM, Govoni J, et al.
2011Comparitive characterization of the PvuRts11 family and application in mapping genomic 5-hydroxymethylcytosineNucl. Acids Res.
1997Compilation and analysis of intein sequences.Nuc.Acids Res.Perler, F.B., Olsen, G.J., and Adam, E.
1993Compilation of Commercially Available NucleasesNucleasesSchildkraut, I.
2014Complementation of essential yeast GPI mannosyltransferase mutations suggests a novel specificity for certain Trypanosoma and Plasmodium PigB proteinsPLoS OneCortes, L.K., Scarcelli, J.J., Taron, C.H.
2016Complete Genome and Methylome Sequences of Salmonella enterica subsp. enterica Serovar Panama (ATCC 7378) and Salmonella enterica subsp. enterica Serovar Sloterdijk (ATCC 15791).Genome Announc.Yao, K., Muruvanda, T., Roberts, R.J., Payne, J., Allard, M.W. and Hoffmann, M.
2017Complete genome and methylome sequences of Salmonella enterica subsp. enterica Serovars Typhimurium, Saintpaul, and Stanleyville from the SARA/SARB collectionGenome AnnounceYao, K., Roberts, R.J., Allard, M.W., Hoffmann, M.
2016Complete genome and methylome sequences of two SalmonellaGenome AnnouncementsYao, K., Muruvanda, T., Roberts, R.J., Payne, J., Allard, M.W., Hoffmann, M.
2015Complete Genome Sequence Analysis of Bacillus Subtilis T30Genome Announc.Xu, S-Y., Boitano, M., Clark, T.A., Vincze, T., Fomenkov, A., Kumar, S., Too, PH-M., Gonchar, D., Degtyarev, S.K. and Roberts, R.J.
2017Complete genome sequence and methylome analysis of Acinetobacter calcoaceticus 65Fomenkov, A., Vincze, T., Degtyarev, S.K., Roberts, R.J.
2016Complete Genome Sequence and Methylome Analysis of Aeromonas hydrophila Strain YL17, Isolated from a Compost Pile.Genome Announc.Lim, Y.L., Roberts, R.J., Ee, R., Yin, W.F. and Chan, K.G.
2015Complete genome sequence and methylome analysis of bacillus strain x1Genome AnnouncFomenkov, A., Lunnen, K.D., Zhu, Z., Anton, B.P., Wilson, G.G., Vincze, T. and Roberts, R.J.
2014Complete genome sequence of a multidrug resistant Salmonella enterica serovar Typhimurium var. 5-strain isolated from chicken breastGenome Announc.Hoffmann, M., Muruvanda, T., Allard, M.W., Korlach, J., Roberts, R.J., Timme, R., Payne, J., McDermott, P.F., Evans, P., Meng, J., Brown, E.W., Zhao, S.
2013Complete Genome Sequence of a Multidrug-Resistant Salmonella enterica Serovar Typhimurium var. 5- Strain Isolated from Chicken BreastGenome AnnouncHoffmann M, Muruvanda T, Allard MW, Korlach J, Roberts RJ, Timme R, Payne J, McDermott PF, Evans P, Meng J, Brown EW, Zhao S
2016Complete Genome Sequence of a Strain of Azospirillum thiophilum Isolated from a Sulfide Spring.Genome Announc.Fomenkov, A., Vincze, T., Grabovich, M., Anton, B.P., Dubinina, G., Orlova, M., Belousova, E. and Roberts, R.J.
2016Complete genome sequence of Brevibacterium linens SMQ-1335.Genome AnnouncementsDe Melo, A., Labrie, S., Dumaresq, J., Roberts, R., Tremblay, D. and Moineau, S.
2015Complete Genome Sequence of Curtobacterium sp. strain MR_MD2014, isolated from topsoil in Woods Hole, MassachusettsGenome Announc.Mariita, R.M., Bhatnagar, S., Hanselmann, K., Hossain, M.J., Korlach, J., Boitano, M., Roberts, R.J., Liles, M.R., Moss, A.G., Leadbetter, J.R., Newman, D.K., Dawson, S.C.
2015Complete Genome Sequence of Enteroinvasive Escherichia coli O96:H19 Associated with a Severe Foodborne OutbreakGenome AnnouncPettengill EA, Hoffmann M, Binet R, Roberts RJ, Payne J, Allard M, Michelacci V, Minelli F, Morabito S.
2015Complete Genome Sequence of ER2796, a DNA Methyltransferase-Deficient Strain of Escherichia coli K-12PLoS OneAnton, B.P., Mongodin, E.F., Agrawal, S., Fomenkov, A., Byrd, D.R., Roberts, R.J. and Raleigh, E.A.
2016Complete Genome Sequence of Escherichia coli ER1821R, a Laboratory K-12 Derivative Engineered To Be Deficient in All Methylcytosine and Methyladenine Restriction SystemsGenome Announc.Jobling, M.G., Raleigh, E.A. and Frank, D.N.
2017Complete genome sequence of Kluyveromyces lactis strain GG799, a common yeast host for heterologous protein expressionGenome AnnouncementsChuzel, L., Ganatra, M.B., Schermerhorn, K.M., Gardner, A.F., Anton, B.P., Taron, C.H.
2016Complete Genome Sequence of NEB 5-alpha, a Derivative of Escherichia coli K-12 DH5 alpha.Genome Announc. Anton, B.P. and Raleigh, E.A.
2015Complete Genome Sequence of Salmonella enterica subsp. enterica Serovar Agona 460004 2-1, Associated with a Multistate Outbreak in the United StatesGenome AnnouncHoffmann M, Payne J, Roberts RJ, Allard MW, Brown EW, Pettengill JB
2015Complete Genome Sequence of Streptomyces sp. strain CCM_MD2014, isolated from topsoil in Woods Hole, MassachusettsGenome Announc.Mariita, R.M., Bhatnagar, S., Hanselmann, K., Hossain, M.J., Korlach, J., Boitano, M., Roberts, R.J., Liles, M.R., Moss, A.G., Leadbetter, J.R., Newman, D.K., Dawson, S.C.
2016Complete Genome Sequence of the Engineered Escherichia coli SHuffle Strains and Their Wild-Type Parents Genome Announc.Anton, B.P., Fomenkov, A., Raleigh, E.A. and Berkmen, M.
2015Complete Genome Sequence of the freshwater colorless sulfur bacterium Beggiatoa leptomitiformis neotype strain D-402TGenome Announc.Fomenkov, A., Vincze, T., Grabovich, M.Y., Dubinina, G., Orlova, M., Belousova, E., Roberts, R.J.
2015Compounds targeting disulfide bond forming enzyme DsbB of Gram-negative bacteriaNature Chemical Biology Landeta, C., Blazyk, J.L., Hatahet, F., Meehan, B.M., Eser, M., Myrick, A., Bronstain, L., Minami, S., Arnold, H., Ke, N., Rubin, E.J., Furie, B.C., Furie, B., Beckwith, J., Dutton, R., Boyd, D.
2008Comprehensive Analysis of the Effects of Eschericia coli ORF's on Protein Translation Reaction Molecular & Cellular Proteomics Kazuta, Y., Adachi, J., Matsuura, T., Ono, N., Mori, H. and Yomo T.
2009Comprehensive mapping of long range interactions reveals folding principles of the human genomeScienceLieberman-Aiden E., van Berkum N., Williams L., Imakaev M., Ragoczy T., Telling A., Amit I., Lajoie B., Sabo P., Dorschner M., Sandstrom R., Bernstein B., BenderM. A., Groudine M., Gnirke A., Stamatoyannopoulos J., Mirny L., Lander E., Dekker J. Epigenetics
2016Comprehensive nucelosome mapping of the human genome in cancer progressionOncotargetDruliner, B.R., Vera, D., Johnson, R., Ruan, X., Apone, L.M., Dimalanta, E.T., Stewart, F.J., Boardman, L., Dennis, J.H.
2016Comprehensive Profiling of Glycosphingolipid Glycans Using a Novel Broad Specificity Endoglycoceramidase in a High-Throughput Workflow.Albrecht, S., Vainauskas, S., Stöckmann, H., McManus, C., Taron, C.H. and Rudd, P.M.
2002Computational Identification of Operons in Microbial Genomes.Genome Res.Zheng, Y., Szustakowski, J.D., Fortnow, L., Roberts, R.J.and Kasif, S.
2009Computational Prediction of Essential Genes in an Unculturable Endosymbiotic Bacterium, Wolbachia of Brugia malayi.BMC Microbiol.Holman, A.G., Davis, P.J., Foster, J.M., Carlow, C.K.S.and Kumar, S.
2014Concurrent transcriptional profiling of Dirofilaria immitis and its Wolbachia endosymbiont throughout the nematode life cycle reveals coordinated gene expressionBMC GenomicsLuck, A.N., Evans, C.C., Foster, J.M., et al.
2013ConjugationBrenner's Encyclopedia of GeneticsRaleigh, E.A. and Low, K.B.
2014Consequences of the disease-related L78R mutation for dimerization and activity of STAT3J Cell SciDomoszlai T, Martincuks A, Fahrenkamp D, Schmitz-Van de Leur H, Küster A, Müller-Newen GSNAP Cell, Cellular Analysis
2010Conservation and divergence of methylation patterning in plants and animalsProc. Natl. Acad. Sci. USA Feng, S., Cokusb, S.J., Zhang, X. et al
2015Considerations and protocols for the synthesis of custom protein labeling probesMetholds Mol BiolCorrea, I.R. Jr.
2010Constitutive secretion in Tetrahymena thermophila.Eukaryot Cell Madinger, C.L., collins, K., Fields, L.G., Taron, C.H.and Benner, J.S.
1997Construction and characterization of a radio-iodinatable mutant of recombinant human CD4.J.Immunol.Methods Ferrer, M., Godbout, K., Sullivan, B., Austen, D., Sanderson, C., Kelley, K., Osburne, M., Harrison, S.and van Schravendijk, M.R.
2000Construction and use of pIII-displayed peptide librariesPhage Display: A Laboratory ManualNoren, K.A., Saltman, L.H.and Noren, C.J.
2001Construction of a mini-intein fusion system to allow both direct monitoring of soluble protein expression and rapid purification of target proteins.GeneZhang, A., Gonzales, S.M., Cantor, E.J.and Chong, S.
2004Construction of BAC libraries from the parasitic nematode Brugia malayi and physical mapping of the genome of its Wolbachia endosymbiont.Int.J.Parasitol.Foster, J.M., Kumar, S., Ganatra, M.B., Kamal, I.H., Ware, J., Ingram, J., Pope-Chappell, J., Guiliano, D., Whitton, C., Daub, J., Blaxter, M.L.and Slatko, B.E.
2001Construction of high-complexity combinatorial phage display peptide libraries.MethodsNoren, K.A.and Noren, C.J.
2016Construction of High-Density Linkage Maps of Populus deltoides × P. simonii Using Restriction-Site Associated DNA Sequencing.PLoS One. Tong C, Li H, Wang Y, Li X, Ou J, Wang D, Xu H, Ma C, Lang X, Liu G, Zhang B, Shi J.
2008Construction of intein mediated hGMCSF expression vector and its prufication in Pichia pastorisProtein Exp. Purif.Babu, S.K., et. al.
1994Construction of pSC101 derivatives with Camr and Tetr for selection or LacZ' for blue/white screening.BioTechniquesXu, S.Y., and Fomenkov, A.
2015Contrasting genetic structure between mitochondrial and nuclear markers in the dengue fever mosquito from Rio de Janeiro: implications for vector control.Evol Appl. Rašić G, Schama R, Powell R, Maciel-de Freitas R, Endersby-Harshman NM, Filipović I, Sylvestre G, Máspero RC, Hoffmann AA.
2010Controlled expression of functional miR-122 with a ligand inducible expression system.BMC Biotechnology Shea, C.and Tzertzinis, G.
2015Converting a Sulfenic Acid Reductase into a Disulfide Bond IsomeraseAntioxid Redox Signal.Chatelle C, Kraemer S, Ren G, Chmura H, Marechal N, Boyd D, Roggemans C, Ke N, Riggs P, Bardwell J, Berkmen M.
2015Converting a Sulfenic Acid Reductase into a Disulfide Bond IsomeraseAntioxid Redox SignalChatelle C, Kraemer S, Ren G, Chmura H, Marechal N, Boyd D, Roggemans C, Ke N, Riggs P, Bardwell J, Berkmen M
2001Converting MlyI endonuclease into a nicking enzyme by changing its oligomerization state.EMBO Reports Besnier, C.E.and Kong, H.
2002Co-operation and communication between the human maintenance and de novo DNA (cytosine-5) methyltransferases.EMBO J.Kim, G.D., Ni, J., Kelesoglu, N., Roberts, R.J.and Pradhan, S.
2010Coordination sphere of the third metal site is essential to the activity and metal selectivity of alkaline phosphatases.Protein Sci.Koutsioulis, D., Lyskowski, A.Maki, S., Guthrie, E., Feller, G., Bouriotis, V.and Heikinheimo, P.
2005Co-translational involvement of the chaperonin GroEL in the folding of newly translated polypeptidesJ. Biol. Chem.Ying, B.W., Taguchi, H., Kondo, M. and Ueda, T.
2003Covalent and selective immobilization of fusion proteinsJACS Kindermann M. et al.
2005Covalent immobilization of recombinant fusion proteins with hAGT for single molecule force spectroscopyEur. Biophys. J Kufer S.K. et al.
2006Covalent labeling of cell-surface proteins for in vivo FRET studiesFEBS Letters Meyer B.H. et al.
2003Covalent labeling of fusion proteins with chemical probes in living cellsChimia Gendreizig S. et al.
2002Creation of an Artificial Bifunctional Intein by Grafting a Homing Endonuclease into a Mini-intein.J.Mol.Biol.Hall, M.F., Noren, C., Perler, F.and Schildkraut, I.