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    YearTitleJournalAuthorsApplication(s)
    2008Crucial role of aspartic acid at position 265 in the CH2 domain for murine IgG2a and IgG2b Fc-associated effector functions J Immunol. Baudino L, Shinohara Y, Nimmerjahn F, Furukawa J, Nakata M, Martínez-Soria E, Petry F, Ravetch JV, Nishimura S, Izui S.
    2003Crystal structure of a mini-intein reveals a conserved catalytic module involved in side chain cyclization of asparagine during protein splicing.J.Biol.Chem.Ding, Y., Xu, M.-Q., Ghosh, I., Chen, X., Ferrandon, S., Lesage, G., Rao, Z.
    2001Crystal structure of a phosphorylated Smad2. Recognition of phosphoserine by the MH2 domain and insights on Smad function in TGF-beta signalingMol Cell.Wu, J.W., et al.
    2004Crystal Structure of BstYI at 1.85 Angstrom Resolution: A Thermophilic Restriction Endonuclease with Overlapping Specificities to BamHI and BglII.J.Molec.Biol.Townson, S.A., Samuelson, J.C., Vanamee, E.S., Edwards, T.A., Escalante, C.R., Xu, S.-Y.and Aggarwal, A.K.
    1995Crystal structure of endo-beta-N-acetylglucosaminidase H at 1.9 A resolution: active-site geometry and substrate recognition.StructureRao, V., Guan, C., and Van Roey, P.
    1998Crystal Structure of Restriction Endonuclease BgII Bound to its Interrupted DNA Recognition Sequence.EMBO J.Newman, M., Lunnen, K., Wilson, G., Greci, J., Schildkraut, I., Phillips, S.E.
    1998Crystal Structure of the Complex of Brugia Malayi Cyclophilin and Cyclosporin A.BiochemistryEllis, P.J., Carlow, C.K.S., Ma, D.and Kuhn, P.
    2000Crystal Structure of the Complex of Brugia Malayi Cyclophilin and Cyclosporin A.Protein Sci.Ellis, P.J., Carlow, C.K.S., Ma, D.and Kuhn, P.
    1998Crystal Structure of the Cyclophilin-like Domain from the Parasitic Nematode Brugia Malayi.Protein Sci.Mikol, V., Ma, D., Carlow, C.K.S.
    1993Crystal structure of the HhaI DNA methyltransferase complexed with S-adenosyl-L-methionine.CellCheng, X., Kumar, S., Posfai, J., Pflugrath, J.W., and Roberts, R.J.
    1993Crystal Structure of the HhaI DNA Methyltransferase.Cheng, X., Kumar, S., Klimasauskas, S., and Roberts, R.J.
    1995Crystal structure of the PvuII restriction endonuclease.GeneCheng, X., Balendiran, K., Schildkraut, I., and Anderson, J.E.
    2005Crystal structure of the restriction-modification system control element C.BclI and mapping of its binding site.StructureSawaya, M.R., Zhu, Z., Fana, M., Chan, S.H., Dabur, R., Xu, S.Y.and Balendiran, G.K.
    2005Crystal structures of an intein from the split dnaE gene of Synechocystis sp.PCC6803 reveal the catalytic model of intein without the penultimate histidine and the mechanism of zinc ion inhibition of protein splicing.J.Mol.Biol.Ping, S., Ye, S., Ferrandon, S., Evans, T.C., Xu, M-Q.and Rao, Z.
    1998Crystal Structures of Flavobacterium Glycosylasparaginase.J.Biol.Chem.Guo, H.-C., Xu, Q., Buckley, D.and Guan, C.
    2011Crystallization and preliminary crystallographic analysis of the Type IIL restriction enzyme MmeI in complex with DNA.Acta Crystallogr.F.Structural biology and crystallization communications Callahan, S.J., Morgan, R.D., Jain, R., Townson, S.A., Wilson, G.,G.Roberts, R.J.and Aggarwal, A.K.
    1994Crystallization and Preliminary Crystallographic Analysis of Two Endo-b-N-acetylglucosaminidases, Endo H and Endo F1.J.Mol.Biol.Van Roey, P., Silva, G.H., Rao, V., Plummer, J., T.H., Tarention, A.L., and Guan, C.
    1999Crystallization and preliminary diffractin analysis of the HincII restriction endonuclease-DNA complex.Acta Crystallogr.D.Biol.Crystallogr.Horton, N.C, Dorner, L.F., Schildkraut, I.and Perona J.J.
    1994Crystallization and Preliminary X-ray Analysis of Restriction Endonuclease BamHI-DNA Complex.J.Mol.Biol.Strzelecka, T., Newman, M., Dorner, L.F., Knott, R., Schildkraut, I., and Aggarwal, A.K.
    1997Crystallization and Preliminary X-ray Analysis of Restriction Endonuclease FokI Bound to DNA.FEBS Lett.Hirsch, J.A., Wah, D.A., Dorner, L.F., Schildkraut, I., Aggarwal, A.K.
    2000Crystallization and preliminary X-ray diffraction analysis of MspI restriction endonuclease in complex with its cognate DNA.Acta Crystallogr.D.Biol.Crystallogr.O'Loughlin, T.J., Xu, Q., Kucera, R.B., Dorner, L.F., Sweeney, S., Schildkraut, I.and Guo, H.-C.
    2000Crystallization of Restriction Endonuclease BamHI with Nonspecific DNA.J.Struct.Biol.Viadiu, H., Kucera, R., Schildkraut, I.and Aggarwal, A.K.
    2002Crystallographic study of a naturally occurring trans-splicing intein from Synechocystis sp.PCC 6803.Acta Crystallogr.D.Biol.Crystallogr.Chen, X., Xu, M.-Q., Ding, Y., Ferrandon, S.and Rao, Z.
    2008CXXC domain of human DNMT1 is essential for enzymatic activity.BiochemistryPradhan, M., Estève, P.O., Chin, H.G., Samaranayke, M., Kim, G.D.and Pradhan, S.
    2011Cyclophosphamide perturbs cytosine methylation in jurkat-T Cells through LSD1-mediated stabilization of DNMT1 ProteinChem. Res. Toxicol.Zhang, J. et al.
    2011Cyclophosphamide Perturbs Cytosine Methylation in Jurkat-T Cells through LSD1-Mediated Stabilization of DNMT1 Protein.Chem.Res.Toxicol.Zhang, J., Yuan, B., Zhang, F., Xiong, L., Pradhan, S.and Wang, Y.
    2003Cytosine methylation by the SuaI restriction-modification system: implications for genetic fidelity in a hyperthermophilic archaeon.J.Bacteriol.Grogan, D.W.
    Database of DNA polymerasesCurr Protoc Mol Biol. Langhorst, B.W. and Nichols, N.M.
    2011Decoding a Substantial Set of Samples in Parallel by Massive SequencingPLoS ONE  Neiman, M., Lundin, S., Savolainen, P., Ahmadian, A.
    2013Decreased vancomycin susceptibility in Staphylococcus aureus caused by IS256 tempering of WalKR expressionAntimicrob Agents ChemotherMcEvoy CR, Tsuji B, Gao W, Seemann T, Porter JL, Doig K, Ngo D, Howden BP, Stinear TP
    1999Deep within the Filarial Genome: Progress of the Filarial Genome Project.Parasitology Today The Filarial Genome Project
    2004Deficiencies in the essential Smp3 mannosyltransferase block glycosylphosphatidylinositol assembly and lead to defects in growth and cell wall biogenesis in Candida albicans.Microbiology Grimme, S.J., Colussi, P.A., Taron,C.H.and Orlean, P.
    2006Deglycosylation of the beta1-subunit of the BK channel changes its biophysical propertiesAm. J. Physiol.Cell. Physiol.  Hagen, B.M., Sanders, K.M.
    1998Dependence of McrBC Cleavage on Distance Between Recognition Elements.Biol.Chem.Stewart, F.J.and Raleigh, E.A.
    2007Design and Use of Ligated Phophoproteins: Study of Protein Phosphatases by Dot Blot Array, ELISA and Western Blot Analysis.MethodsSun, L., Ghosh, I., Barshevsky, T., Kochinyanm, S.and Xu, M.
    2010Design of a potent D-peptide HIV-1 entry inhibitor with a strong barrier to resistanceJ. Virol.Welch, B.D. et al.
    2007Design, preparation and use of ligated phosphoproteins: A novel approach to study protein phosphatases by dot blot array, ELISA and Western blot assaysMethodsSun, L., et al.
    2010Designed semisynthetic protein inhibitors of ub/ubl e1 activating enzymesJ. Am. Chem. Soc. Lu, X., et al.
    1997Detection and Isolation of Recombinant Protein Based on Binding Affinity ReporterMethods Mol.Biol.Riggs, P.
    2009Detection of ligand-induced CNTF receptor dimers in living cells by fluorescence cross correlation spectroscopyBiochim. Biophys. Acta.  Neugart F. et al.
    1997Detection of Loa loa-specific DNA in Blood from Occult-Infected Individuals.Exp.Parasitol.Toure, F.S., Bain, O., Nerrienet, E., Millet, P., Wahl, G., Toure, Y., Doumbo, O., Nicolas, L., Georges, A.L., McReynolds, L.A., and Egwang, T.G.
    2012Detection of miRNAs with a nanopore single-molecule counterExpert Rev. Mol. Diagn.Gu, L.Q., et al.
    2012Detection of miRNAs with a nanopore single-molecule counterExpert Rev Mol Diagn.Gu, L.Q., Wanunu, M., Wang, M.X., McReynolds, L. and Wang, Y.
    2001Detection of Serum IgG Antibodies Specific for Wolbachia Surface Protein in Rhesus Monkeys Infected with Brugia malayi.J Infectious Diseases Punkosdy, G.A., Dennis, V.A., Lasater, B.L., Tzertzinis, G.foster, J.M.and Lammie, P.J.
    1999Determinants of nucleotide sugar recognition in an archaeon DNA polymerase.Nuc.Acids Res.Gardner, A.F.and Jack, W.E.
    1998Determination of Certain Agarose-Immobilized Ligands by Use of Perchloric Acid.Biochromatography Wilkie, S.D.and Landry, D.
    2007Determination of silencing potency of synthetic and RNase III-generated siRNA using a secreted luciferase assay Biotechniques Morlighem, J.E., Petit, C. and Tzertzinis, G.
    2007Determination of silencing potency of synthetic and RNase III-generated siRNA using a secreted luciferase assay.BioTechniquesMorlighem, J-E., Petit, C.and Tzertzinis, G.
    2007Determination of silencing potency of synthetic and RNase Ill-generated siRNA using a secreted luciferase assay.BiotechniquesMorlighem, J.E., Petit, C and Tzertzinis, G.
    2001Determination of Wolbachia Genome Size by Pulsed-Field Gel Electrophoresis.J.Bacteriol.Sun, L.V., Foster, J.M., Tzertzinis, G., Ono, M., Bandi, C., Slatko, B.E.and O'Neill, S.L.
    2008Development of a dual-luciferase reporter system for in vivo visualization of MicroRNA biogenesis and posttranscriptional regulationNucl. Med.Lee, J.Y., Kim, S., Hwang do, W., Jeong, J.M.,Chung, J.K., Lee, M.C., Lee, D.S.J.
    2005Development of a minimal cell-free translation system for the synthesis of presecretory and integral membrance proteinsBiotechnol, Prog.Kuruma, Y., Nishiyama, K., Shimizu, Y., Muller, M and Ueda, T.
    2002Development of a Positive Genetic Selection System for Inhibition of Protein Splicing Using Mycobacterial Inteins in Escherichia coli DNA Gyrase Subunit A.J.Mol.Micro.Biotechnol.Adam, E.and Perler, F.B.
    2011Development of SNAP-Tag Fluorogenic Probes for Wash-Free Fluorescence Imaging.Chembiochem.Sun, X., Zhang, A., Baker, B., Sun, L., Howard, A., Buswell, J., Maurel, D., Masharina, A., Johnsson, K., Noren, C.J., Xu, M-Q and Corrêa, I.R., Jr.
    2010Development of SNAP-tag-mediated live cell labeling as an alternative to GFP in Porphyromonas gingivalisFEMS Immunol. Med. Microbiol.  Nicolle O. et al.
    2014Development of VHH Antibodies against Dengue Virus Type 2 NS1 and Comparison with Monoclonal Antibodies for Use in Immunological DiagnosisPLoS OneFatima A, Wang H, Kang K, Xia L, Wang Y, Ye W, Wang J, Wang X.Phage Display
    2015Developmental exposure to 2,3,7,8-tetrachlorodibenzo-p-dioxin alters DNA methyltransferase (dnmt) expression in zebrafish (Danio rerio)Toxicol Appl PharmacolAluru N, Kuo E, Helfrich LW, Karchner SI, Linney EA, Pais JE, Franks DG
    2014DevR (DosR) mimetic peptides impair transcriptional regulation and survival of Mycobacterium tuberculosis under hypoxia by inhibiting the autokinase activity of DevS sensor kinaseBMC MicrobiolKaur K, Taneja NK, Dhingra S, Tyagi JSPhage Display
    2012Diagnosis of Brugian Filariasis by Loop-Mediated Isothermal AmplificationPLOS Negl Trop DisPoole, C., Tanner, N. Zhang, Y., Evans, T. and Carlow, C.
    1995Differential recognition of microfilarial chitinase, a transmission-blocking vaccine candidate antigen, by sera from patients with Brigian and Bancroftian filariasis.Am.J.Trop.Med.Hyg.Dissanayake, S., Perler, F.B., Xu, M., Southworth, M.W., Yee, C.K., Wang, S., Dreyer, G., Watawana, L., Kurniawan, L., Fuhrman, J.A., and Piessens, W.F.
    2008Diffusion and directed movement: in vitro motile properties of fission yeast kinesin-14 Plk1 J. Biol. Chem.  Fururta, K. et al.
    2013Digital droplet PCR for rapid quantification of donor DNA in the circulation of transplant recipients as a potential universal biomarker of graft injury.Clin. Chem.Beck J, Bierau S, Balzer S, Andag R, Kanzow P, Schmitz J, Gaedcke J, Moerer O, Slotta JE, Walson P, Kollmar O, Oellerich M, Schütz E.
    2006Direct interaction between DNMT1 and G9a coordinates DNA and histone methylation during replication.Genes & Devel.Esteve, P.O., Chin, H.G., Smallwood, A., Feehery, G.R., Gangisette, O., Karpf, A.R., Carey, M.F.and Pradhan, S.
    2009Direct observation of the nanoscale dynamics of membrane lipids in a living cellNature Eggeling C. et al.
    1994Direct selection of binding proficient/catalytic deficient variants of BamHI endonuclease.Nucl.Acids.Res.Dorner, L.F., and Schildkraut, I.
    2008Direct site-selective covalent protein immobilization catalyzed by a phosphopantetheinyl transferaseJ. Am. Chem. Soc. Wong L. S. et al.
    2006Directed evolution of O6-alkylguanine-DNA alkyltransferase for applications in protein labelingProt. Eng. Des. Sel. Gronemeyer T. et al.
    2003Directed evolution of O6-alkylguanine-DNA alkyltransferase for efficient labeling of fusion proteins with small molecules in vivoChem. Biol.  Juillerat A. et al.
    2002Directed Evolution of Restriction Endonuclease BstYI to Achieve Increased Substrate Specificity.J.Mol.Biol.Samuelson, J.C.and Xu, S.Y.
    2002Dirofilaria immitis encodes Di-nhr-7, a putative orthologue of the Drosophila ecdysone-regulated E78 gene.Mol.Biochem.Parasitol.Crossgrove, K., Laudet, V.and Maina, C.V.
    1987Dirofilaria immitis: Genomic Complexity and Characterication of a Structural Gene.Molecular Paradigms for Eradicating Helminthic ParasitesMaina, C.V., Grandea, A.G.I., Le, T.K.T., Nur, A., Williams, S.A., and McReynolds, L.A.
    2001Discovery and distribution of super-integrons among pseudomonads.Mol.Microbiol.Vaisvila, R., Morgan, R.D., Posfai, J.and Raleigh, E.A.
    1997Discovery and Uses of Novel GlycosidasesTechniques in GlycobiologyWong-Madden, S.T., Landry, D., and Guthrie, E.P. Glycobiology
    1998Discovery and Uses of Novel GlycosidasesTechniques in GlycobiologyWong-Madden, S.T., Landry, D., and Guthrie, E.P.
    2007Discovery of natural nicking endonucleases Nb.BsrDI and Nb.BtsI and engineering of top-strand nicking variants from BsrDI and BtsI.Nucl.Acids.Res.Xu, S.Y.,  Zhu, Z., Zhang, P., Chan, S.H., Samuelson, J., Xiao, J., Ingalls D.and Wilson, G.
    2010Discrimination of methylcytosine from hydroxymethylcytosine in DNA molecularJ. Am. Chem. Soc.Wanunu, M. et al.
    2010Discrimination of Methylcytosine from Hydroxymethylcytosinein DNA Molecular.J Am Chem Soc Wanunu, M., Cohen-Karni, D., Johnson, R.R., Fields, L., Benner, J., Peterman, N., Zheng, Y., Klein, M.L., Drndic, M.
    2011Disruption of PMR1 in Kluyveromyces lactis improves secretion of calf prochymosinJ. Sci. Food Agric.Feng, Z., et al.
    2008Disruption of the OCH1 and MNN1 genes decrease N-glycosylation on glycoprotein expressed inKluyveromyces lactisJ. Biotechnol. Liu, B., Gong, X., Chang, S., Yang, Y., Song, M., Duan, D., Wang, L., Ma, Q., and Wu, J.
    1995Disruption of the target G-C base-pair by the HhaI methyltransferase.GeneKlimasauskas, S., and Roberts, R.J.
    2000Dissecting the Chemistry of Protein Splicing and its ApplicationsAngew.Chem.Int.Ed.Noren, C.J., Wang, J.and Perler, F.B.
    2007Distribution plasticity of the human estrogen receptor alpha in live cells: distinct imaging of consecutively expressed receptorsJ. Mol. Biol. Pick H. et al.
    2012Disulfide-bonded protein expression in E. coliGenetic Engineering & Biotechnology NewsSamuelson, J.C., Causey, T.B., and Berkmen, M.
    2007Diversifying selection and host adaptation in two endosymbiont genomes.BMC Evolutionary BiologyBrownlie, J.C., Adamski, M., Slatko, B.and McGraw, E.A.
    2014Diversity and Expression of MicroRNAs in the Filarial Parasite, Brugia malayi.PLoS OnePoole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA.
    2005DNA -binding activity of LndI protein and temporal expression of the gene that upregulates landomycin E production in Streptomyces globisporus 1912Microbiology Rebets, Y., et al.
    2002DNA Binding and Recognition by the IIs Restriction Endonuclease MboII.J.Biol.Chem.Soundararajan, M., Chang, Z., Morgan, R.D., Heslop, P.and Connolly, B.A.
    2009DNA Cloning and Engineering by Uracil Excision.Curr.Protoc.Mol.Biol.Bitinaite, J.and Nichols, N.M.
    1997DNA containing 4'-thio-2' deoxycytidine inhibits methylation by HhaI methyltransferase.Nucl.Acids Res.Kumar, S., Horton, J.R., Jones, G.D., Walker, R.T., Roberts, R.J., and Cheng, X.
    2008DNA damage in preserved specimens and tissue samples: a molecular assessment.Frontiers in Zoology Zimmermann, J., Hajibabaei, M., Blackburn, D.C., Hanken, J., Cantin, E., Posfai, J.and Evans, T.C.
    2006DNA Damage-induced Down-regulation of Human Cdc25C and Cdc2 is Mediated by Cooperation between p53 and Maintenance DNA (Cytosine 5) Methyltransferase 1.J Biol Chem.Le Gac, G., Esteve, P., Ferec, C.and Pradhan, S.
    2008DNA distortion and specificity in a sequence-specific endonuclease.J.Mol.Biol.Babic, A.C., Little, E.J., Manohar, V.M., Bitinaite, J., Horton, N.C.
    1984DNA modification methylases: New uses in the manipulation of DNA.BioTechniquesChrist, C., and Nelson, M.
    2006DNA nicking by HinP1I endonuclease: bending, base flipping and minor groove expansion.Nucl.Acids.Res.Horton, J.R., Zhang, X., Maunus, R., Yang, Z., Wilson, G.G., Roberts, R.J.and Cheng, X.
    2008DNA Repair Enzymes.Curr.Protoc.Mol.Biol.Evans, T.C., Jr.and Nichols, N.M.
    2003DNA -repair protein hHR23a alters its protein structure upon binding proteasomal subunit S5aProc. Natl. Acad. Sci. USA Walters, K.J., et al.
    1994DNA sequencingCurr.Protoc.Mol.Biol.Slatko, B., Heinrich, P., Nixon, B.T., Eckert, R.L., Albright, L., and Ausubel, F.
    2013DNMT1-interacting RNAs block gene-specific DNA methylationNatureAnnalisa Di Ruscio, Alexander K. Ebralidze, Touati Benoukraf, Giovanni Amabile, Loyal A. Goff, Jolyon Terragni, Maria Eugenia Figueroa, Lorena Lobo De Figueiredo Pontes, Meritxell Alberich-Jorda, Konstantin K. Ebralidze, Sriharsa Pradhan, John L. Rinn, Daniel G. Tenen
    1998Does Bcg1, a Unique Restriction Endonuclease, Require Two Recognition Sites for Cleavage?J Biol.Chem Kong, H., and Smith, C.L.
    2010D-peptide inhibitors of the p53-MDM2 interaction for targeted molecular therapy of malignant neoplasmsProc. Natl. Acad. Sci.Liu, M. et al.