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    YearTitleJournalAuthorsApplication(s)
    2015Comparative Analysis of the Glycosylation Profiles of Membrane-Anchored HIV-1 Envelope Glycoprotein Trimers and Soluble gp140.J VirolGo E.P., Herschhorn A., Gu C., Castillo-Menendez L., Zhang S., Mao Y., Chen H., Ding H., Wakefield J.K., Hua D., Liao H.X., Kappes J.C., Sodroski J., Desaire H.
    2011Comparative characterization of the PvuRts1I family and application in mapping genomic 5-hydroxymethylcytosine.Nucl.Acids Res.Wang, H., Guan, S., Quimby, A., Cohen-Karni, D., Pradhan, S., Wilson, G.G., Roberts, R.J., Zhu, Z.and Zheng, Y.
    2011Comparative characterization of the PvuRts1I family of restriction enzymes and their application in mapping genomic 5-hydroxymethylcytosineNucleic Acids ResWang H, Guan S, Quimby A, Cohen-Karni D, Pradhan S, Wilson G, Roberts RJ, Zhu Z, Zheng Y
    2010Comparative genomic hybridization of Bifidobacterium longum strains reveals broad conservation of milk utilization genes in subsp. infantisAppl. Environ. Microbiol. LoCascio, R.G., Desai, P., Sela, D.A., Weimer, B., and Mills, D.A.
    2001Comparative genomics of the restriction-modification systems in Helicobacter pylori.Proc.Natl.Acad.Sci.USA Lin, L.F., Posfai, J., Roberts, R.J.and Kong, H.
    2004Comparative Kinetics of Nucleotide Analog Incorporation by Vent DNA Polymerase.J.Biol.Chem.Gardner, A.F., Joyce, C.M.and Jack, W.E.
    2009Comparison of distinct protein isoforms of the receptor for advanced glycation end-products expressed in murine tissues and cell linesCell Tissue Res. Gefter, J.V., Shaufl, A.L., Fink, M.P., Delude, R.L. Glycobiology
    2015Comparison of loop-mediated isothermal amplification and real-time PCR for detecting Bordetella pertussis.J Med MicrobiolMohammad Reza Allahyar Torkaman, Kazunari Kamachi, Vajihe Sadat Nikbin, Masoumeh Nakhost Lotfi, Fereshteh ShahcheraghiIsothermal Amplification
    2014Comparison of Subtypes of Listeria monocytogenes Isolates from Naturally Contaminated Watershed Samples with and without a Selective Secondary EnrichmentPLoS ONEGorski L, Walker S, Liang AS, Nguyen KM, Govoni J, et al.
    2011Comparitive characterization of the PvuRts11 family and application in mapping genomic 5-hydroxymethylcytosineNucl. Acids Res.
    1997Compilation and analysis of intein sequences.Nuc.Acids Res.Perler, F.B., Olsen, G.J., and Adam, E.
    1993Compilation of Commercially Available NucleasesNucleasesSchildkraut, I.
    2016Complete Genome and Methylome Sequences of Salmonella enterica subsp. enterica Serovar Panama (ATCC 7378) and Salmonella enterica subsp. enterica Serovar Sloterdijk (ATCC 15791).Genome Announc.Yao, K., Muruvanda, T., Roberts, R.J., Payne, J., Allard, M.W. and Hoffmann, M.
    2016Complete Genome Sequence and Methylome Analysis of Aeromonas hydrophila Strain YL17, Isolated from a Compost Pile.Genome Announc.Lim, Y.L., Roberts, R.J., Ee, R., Yin, W.F. and Chan, K.G.
    2015Complete genome sequence and methylome analysis of bacillus strain x1Genome AnnouncFomenkov, A., Lunnen, K.D., Zhu, Z., Anton, B.P., Wilson, G.G., Vincze, T. and Roberts, R.J.
    2013Complete Genome Sequence of a Multidrug-Resistant Salmonella enterica Serovar Typhimurium var. 5- Strain Isolated from Chicken BreastGenome AnnouncHoffmann M, Muruvanda T, Allard MW, Korlach J, Roberts RJ, Timme R, Payne J, McDermott PF, Evans P, Meng J, Brown EW, Zhao S
    2016Complete Genome Sequence of a Strain of Azospirillum thiophilum Isolated from a Sulfide Spring.Genome Announc.Fomenkov, A., Vincze, T., Grabovich, M., Anton, B.P., Dubinina, G., Orlova, M., Belousova, E. and Roberts, R.J.
    2015Complete Genome Sequence of Enteroinvasive Escherichia coli O96:H19 Associated with a Severe Foodborne OutbreakGenome AnnouncPettengill EA, Hoffmann M, Binet R, Roberts RJ, Payne J, Allard M, Michelacci V, Minelli F, Morabito S.
    2015Complete Genome Sequence of ER2796, a DNA Methyltransferase-Deficient Strain of Escherichia coli K-12PLoS OneAnton, B.P., Mongodin, E.F., Agrawal, S., Fomenkov, A., Byrd, D.R., Roberts, R.J. and Raleigh, E.A.
    2015Complete Genome Sequence of Salmonella enterica subsp. enterica Serovar Agona 460004 2-1, Associated with a Multistate Outbreak in the United StatesGenome AnnouncHoffmann M, Payne J, Roberts RJ, Allard MW, Brown EW, Pettengill JB
    2016Complete Genome Sequence of the Engineered Escherichia coli SHuffle Strains and Their Wild-Type Parents Genome Announc.Anton, B.P., Fomenkov, A., Raleigh, E.A. and Berkmen, M.
    2015Compounds targeting disulfide bond forming enzyme DsbB of Gram-negative bacteriaNature Chemical Biology Landeta, C., Blazyk, J.L., Hatahet, F., Meehan, B.M., Eser, M., Myrick, A., Bronstain, L., Minami, S., Arnold, H., Ke, N., Rubin, E.J., Furie, B.C., Furie, B., Beckwith, J., Dutton, R., Boyd, D.
    2008Comprehensive Analysis of the Effects of Eschericia coli ORF's on Protein Translation Reaction Molecular & Cellular Proteomics Kazuta, Y., Adachi, J., Matsuura, T., Ono, N., Mori, H. and Yomo T.
    2009Comprehensive mapping of long range interactions reveals folding principles of the human genomeScienceLieberman-Aiden E., van Berkum N., Williams L., Imakaev M., Ragoczy T., Telling A., Amit I., Lajoie B., Sabo P., Dorschner M., Sandstrom R., Bernstein B., BenderM. A., Groudine M., Gnirke A., Stamatoyannopoulos J., Mirny L., Lander E., Dekker J. Epigenetics
    2016Comprehensive Profiling of Glycosphingolipid Glycans Using a Novel Broad Specificity Endoglycoceramidase in a High-Throughput Workflow.Albrecht, S., Vainauskas, S., Stöckmann, H., McManus, C., Taron, C.H. and Rudd, P.M.
    2002Computational Identification of Operons in Microbial Genomes.Genome Res.Zheng, Y., Szustakowski, J.D., Fortnow, L., Roberts, R.J.and Kasif, S.
    2009Computational Prediction of Essential Genes in an Unculturable Endosymbiotic Bacterium, Wolbachia of Brugia malayi.BMC Microbiol.Holman, A.G., Davis, P.J., Foster, J.M., Carlow, C.K.S.and Kumar, S.
    2014Concurrent transcriptional profiling of Dirofilaria immitis and its Wolbachia endosymbiont throughout the nematode life cycle reveals coordinated gene expressionBMC GenomicsLuck, A.N., Evans, C.C., Foster, J.M., et al.
    2013ConjugationBrenner's Encyclopedia of GeneticsRaleigh, E.A. and Low, K.B.
    2014Consequences of the disease-related L78R mutation for dimerization and activity of STAT3J Cell SciDomoszlai T, Martincuks A, Fahrenkamp D, Schmitz-Van de Leur H, Küster A, Müller-Newen GSNAP Cell, Cellular Analysis
    2010Conservation and divergence of methylation patterning in plants and animalsProc. Natl. Acad. Sci. USA Feng, S., Cokusb, S.J., Zhang, X. et al
    2015Considerations and protocols for the synthesis of custom protein labeling probesMetholds Mol BiolCorrea, I.R. Jr.
    2010Constitutive secretion in Tetrahymena thermophila.Eukaryot Cell Madinger, C.L., collins, K., Fields, L.G., Taron, C.H.and Benner, J.S.
    1997Construction and characterization of a radio-iodinatable mutant of recombinant human CD4.J.Immunol.Methods Ferrer, M., Godbout, K., Sullivan, B., Austen, D., Sanderson, C., Kelley, K., Osburne, M., Harrison, S.and van Schravendijk, M.R.
    2000Construction and use of pIII-displayed peptide librariesPhage Display: A Laboratory ManualNoren, K.A., Saltman, L.H.and Noren, C.J.
    2001Construction of a mini-intein fusion system to allow both direct monitoring of soluble protein expression and rapid purification of target proteins.GeneZhang, A., Gonzales, S.M., Cantor, E.J.and Chong, S.
    2004Construction of BAC libraries from the parasitic nematode Brugia malayi and physical mapping of the genome of its Wolbachia endosymbiont.Int.J.Parasitol.Foster, J.M., Kumar, S., Ganatra, M.B., Kamal, I.H., Ware, J., Ingram, J., Pope-Chappell, J., Guiliano, D., Whitton, C., Daub, J., Blaxter, M.L.and Slatko, B.E.
    2001Construction of high-complexity combinatorial phage display peptide libraries.MethodsNoren, K.A.and Noren, C.J.
    2008Construction of intein mediated hGMCSF expression vector and its prufication in Pichia pastorisProtein Exp. Purif.Babu, S.K., et. al.
    1994Construction of pSC101 derivatives with Camr and Tetr for selection or LacZ' for blue/white screening.BioTechniquesXu, S.Y., and Fomenkov, A.
    2010Controlled expression of functional miR-122 with a ligand inducible expression system.BMC Biotechnology Shea, C.and Tzertzinis, G.
    2015Converting a Sulfenic Acid Reductase into a Disulfide Bond IsomeraseAntioxid Redox Signal.Chatelle C, Kraemer S, Ren G, Chmura H, Marechal N, Boyd D, Roggemans C, Ke N, Riggs P, Bardwell J, Berkmen M.
    2015Converting a Sulfenic Acid Reductase into a Disulfide Bond IsomeraseAntioxid Redox SignalChatelle C, Kraemer S, Ren G, Chmura H, Marechal N, Boyd D, Roggemans C, Ke N, Riggs P, Bardwell J, Berkmen M
    2001Converting MlyI endonuclease into a nicking enzyme by changing its oligomerization state.EMBO Reports Besnier, C.E.and Kong, H.
    2002Co-operation and communication between the human maintenance and de novo DNA (cytosine-5) methyltransferases.EMBO J.Kim, G.D., Ni, J., Kelesoglu, N., Roberts, R.J.and Pradhan, S.
    2010Coordination sphere of the third metal site is essential to the activity and metal selectivity of alkaline phosphatases.Protein Sci.Koutsioulis, D., Lyskowski, A.Maki, S., Guthrie, E., Feller, G., Bouriotis, V.and Heikinheimo, P.
    2005Co-translational involvement of the chaperonin GroEL in the folding of newly translated polypeptidesJ. Biol. Chem.Ying, B.W., Taguchi, H., Kondo, M. and Ueda, T.
    2003Covalent and selective immobilization of fusion proteinsJACS Kindermann M. et al.
    2005Covalent immobilization of recombinant fusion proteins with hAGT for single molecule force spectroscopyEur. Biophys. J Kufer S.K. et al.
    2006Covalent labeling of cell-surface proteins for in vivo FRET studiesFEBS Letters Meyer B.H. et al.
    2003Covalent labeling of fusion proteins with chemical probes in living cellsChimia Gendreizig S. et al.
    2002Creation of an Artificial Bifunctional Intein by Grafting a Homing Endonuclease into a Mini-intein.J.Mol.Biol.Hall, M.F., Noren, C., Perler, F.and Schildkraut, I.
    2015CRISPR/Cas9 nuclease cleavage combined with Gibson assembly for seamless cloningBiotechniquesWang JW, Wang A, Li K, Wang B, Jin S, Reiser M, Lockey RF
    2015CRL4RBBP7 is required for efficient CENP-A deposition at centromeresJ Cell SciJulien Mouysset, Samuel Gilberto, Michelle G Meier, Fabienne Lampert, Mukta Belwal, Patrick Meraldi, Matthias PeterSNAP Cell
    1991Cross-linking of a monoclonal antibody-antigen complex enables detection of parasite antigen in immunoblots and in an expression library.Mol.Biochem.Parasitol.Awobuluyi, M., Mania, C.V., and Carlow, C.K.S.
    2008Crucial role of aspartic acid at position 265 in the CH2 domain for murine IgG2a and IgG2b Fc-associated effector functions J Immunol. Baudino L, Shinohara Y, Nimmerjahn F, Furukawa J, Nakata M, Martínez-Soria E, Petry F, Ravetch JV, Nishimura S, Izui S.
    2003Crystal structure of a mini-intein reveals a conserved catalytic module involved in side chain cyclization of asparagine during protein splicing.J.Biol.Chem.Ding, Y., Xu, M.-Q., Ghosh, I., Chen, X., Ferrandon, S., Lesage, G., Rao, Z.
    2001Crystal structure of a phosphorylated Smad2. Recognition of phosphoserine by the MH2 domain and insights on Smad function in TGF-beta signalingMol Cell.Wu, J.W., et al.
    2004Crystal Structure of BstYI at 1.85 Angstrom Resolution: A Thermophilic Restriction Endonuclease with Overlapping Specificities to BamHI and BglII.J.Molec.Biol.Townson, S.A., Samuelson, J.C., Vanamee, E.S., Edwards, T.A., Escalante, C.R., Xu, S.-Y.and Aggarwal, A.K.
    1995Crystal structure of endo-beta-N-acetylglucosaminidase H at 1.9 A resolution: active-site geometry and substrate recognition.StructureRao, V., Guan, C., and Van Roey, P.
    1998Crystal Structure of Restriction Endonuclease BgII Bound to its Interrupted DNA Recognition Sequence.EMBO J.Newman, M., Lunnen, K., Wilson, G., Greci, J., Schildkraut, I., Phillips, S.E.
    1998Crystal Structure of the Complex of Brugia Malayi Cyclophilin and Cyclosporin A.BiochemistryEllis, P.J., Carlow, C.K.S., Ma, D.and Kuhn, P.
    2000Crystal Structure of the Complex of Brugia Malayi Cyclophilin and Cyclosporin A.Protein Sci.Ellis, P.J., Carlow, C.K.S., Ma, D.and Kuhn, P.
    1998Crystal Structure of the Cyclophilin-like Domain from the Parasitic Nematode Brugia Malayi.Protein Sci.Mikol, V., Ma, D., Carlow, C.K.S.
    1993Crystal structure of the HhaI DNA methyltransferase complexed with S-adenosyl-L-methionine.CellCheng, X., Kumar, S., Posfai, J., Pflugrath, J.W., and Roberts, R.J.
    1993Crystal Structure of the HhaI DNA Methyltransferase.Cheng, X., Kumar, S., Klimasauskas, S., and Roberts, R.J.
    1995Crystal structure of the PvuII restriction endonuclease.GeneCheng, X., Balendiran, K., Schildkraut, I., and Anderson, J.E.
    2005Crystal structure of the restriction-modification system control element C.BclI and mapping of its binding site.StructureSawaya, M.R., Zhu, Z., Fana, M., Chan, S.H., Dabur, R., Xu, S.Y.and Balendiran, G.K.
    2005Crystal structures of an intein from the split dnaE gene of Synechocystis sp.PCC6803 reveal the catalytic model of intein without the penultimate histidine and the mechanism of zinc ion inhibition of protein splicing.J.Mol.Biol.Ping, S., Ye, S., Ferrandon, S., Evans, T.C., Xu, M-Q.and Rao, Z.
    1998Crystal Structures of Flavobacterium Glycosylasparaginase.J.Biol.Chem.Guo, H.-C., Xu, Q., Buckley, D.and Guan, C.
    2011Crystallization and preliminary crystallographic analysis of the Type IIL restriction enzyme MmeI in complex with DNA.Acta Crystallogr.F.Structural biology and crystallization communications Callahan, S.J., Morgan, R.D., Jain, R., Townson, S.A., Wilson, G.,G.Roberts, R.J.and Aggarwal, A.K.
    1994Crystallization and Preliminary Crystallographic Analysis of Two Endo-b-N-acetylglucosaminidases, Endo H and Endo F1.J.Mol.Biol.Van Roey, P., Silva, G.H., Rao, V., Plummer, J., T.H., Tarention, A.L., and Guan, C.
    1999Crystallization and preliminary diffractin analysis of the HincII restriction endonuclease-DNA complex.Acta Crystallogr.D.Biol.Crystallogr.Horton, N.C, Dorner, L.F., Schildkraut, I.and Perona J.J.
    1994Crystallization and Preliminary X-ray Analysis of Restriction Endonuclease BamHI-DNA Complex.J.Mol.Biol.Strzelecka, T., Newman, M., Dorner, L.F., Knott, R., Schildkraut, I., and Aggarwal, A.K.
    1997Crystallization and Preliminary X-ray Analysis of Restriction Endonuclease FokI Bound to DNA.FEBS Lett.Hirsch, J.A., Wah, D.A., Dorner, L.F., Schildkraut, I., Aggarwal, A.K.
    2000Crystallization and preliminary X-ray diffraction analysis of MspI restriction endonuclease in complex with its cognate DNA.Acta Crystallogr.D.Biol.Crystallogr.O'Loughlin, T.J., Xu, Q., Kucera, R.B., Dorner, L.F., Sweeney, S., Schildkraut, I.and Guo, H.-C.
    2000Crystallization of Restriction Endonuclease BamHI with Nonspecific DNA.J.Struct.Biol.Viadiu, H., Kucera, R., Schildkraut, I.and Aggarwal, A.K.
    2002Crystallographic study of a naturally occurring trans-splicing intein from Synechocystis sp.PCC 6803.Acta Crystallogr.D.Biol.Crystallogr.Chen, X., Xu, M.-Q., Ding, Y., Ferrandon, S.and Rao, Z.
    2008CXXC domain of human DNMT1 is essential for enzymatic activity.BiochemistryPradhan, M., Estève, P.O., Chin, H.G., Samaranayke, M., Kim, G.D.and Pradhan, S.
    2011Cyclophosphamide perturbs cytosine methylation in jurkat-T Cells through LSD1-mediated stabilization of DNMT1 ProteinChem. Res. Toxicol.Zhang, J. et al.
    2011Cyclophosphamide Perturbs Cytosine Methylation in Jurkat-T Cells through LSD1-Mediated Stabilization of DNMT1 Protein.Chem.Res.Toxicol.Zhang, J., Yuan, B., Zhang, F., Xiong, L., Pradhan, S.and Wang, Y.
    2003Cytosine methylation by the SuaI restriction-modification system: implications for genetic fidelity in a hyperthermophilic archaeon.J.Bacteriol.Grogan, D.W.
    Database of DNA polymerasesCurr Protoc Mol Biol. Langhorst, B.W. and Nichols, N.M.
    2011Decoding a Substantial Set of Samples in Parallel by Massive SequencingPLoS ONE  Neiman, M., Lundin, S., Savolainen, P., Ahmadian, A.
    2013Decreased vancomycin susceptibility in Staphylococcus aureus caused by IS256 tempering of WalKR expressionAntimicrob Agents ChemotherMcEvoy CR, Tsuji B, Gao W, Seemann T, Porter JL, Doig K, Ngo D, Howden BP, Stinear TP
    1999Deep within the Filarial Genome: Progress of the Filarial Genome Project.Parasitology Today The Filarial Genome Project
    2004Deficiencies in the essential Smp3 mannosyltransferase block glycosylphosphatidylinositol assembly and lead to defects in growth and cell wall biogenesis in Candida albicans.Microbiology Grimme, S.J., Colussi, P.A., Taron,C.H.and Orlean, P.
    2006Deglycosylation of the beta1-subunit of the BK channel changes its biophysical propertiesAm. J. Physiol.Cell. Physiol.  Hagen, B.M., Sanders, K.M.
    1998Dependence of McrBC Cleavage on Distance Between Recognition Elements.Biol.Chem.Stewart, F.J.and Raleigh, E.A.
    2015Depletion of CG-Specific Methylation in Mycoplasma hyorhinis Genomic DNA after Host Cell InvasionPLoS OneChernov AV., Reyes L., Peterson S., Strongin AY.Epigenetics, Bisulfite Conversion
    2007Design and Use of Ligated Phophoproteins: Study of Protein Phosphatases by Dot Blot Array, ELISA and Western Blot Analysis.MethodsSun, L., Ghosh, I., Barshevsky, T., Kochinyanm, S.and Xu, M.
    2010Design of a potent D-peptide HIV-1 entry inhibitor with a strong barrier to resistanceJ. Virol.Welch, B.D. et al.
    2007Design, preparation and use of ligated phosphoproteins: A novel approach to study protein phosphatases by dot blot array, ELISA and Western blot assaysMethodsSun, L., et al.
    2010Designed semisynthetic protein inhibitors of ub/ubl e1 activating enzymesJ. Am. Chem. Soc. Lu, X., et al.
    1997Detection and Isolation of Recombinant Protein Based on Binding Affinity ReporterMethods Mol.Biol.Riggs, P.
    2009Detection of ligand-induced CNTF receptor dimers in living cells by fluorescence cross correlation spectroscopyBiochim. Biophys. Acta.  Neugart F. et al.
    1997Detection of Loa loa-specific DNA in Blood from Occult-Infected Individuals.Exp.Parasitol.Toure, F.S., Bain, O., Nerrienet, E., Millet, P., Wahl, G., Toure, Y., Doumbo, O., Nicolas, L., Georges, A.L., McReynolds, L.A., and Egwang, T.G.
    2012Detection of miRNAs with a nanopore single-molecule counterExpert Rev. Mol. Diagn.Gu, L.Q., et al.
    2012Detection of miRNAs with a nanopore single-molecule counterExpert Rev Mol Diagn.Gu, L.Q., Wanunu, M., Wang, M.X., McReynolds, L. and Wang, Y.
    2001Detection of Serum IgG Antibodies Specific for Wolbachia Surface Protein in Rhesus Monkeys Infected with Brugia malayi.J Infectious Diseases Punkosdy, G.A., Dennis, V.A., Lasater, B.L., Tzertzinis, G.foster, J.M.and Lammie, P.J.