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Publications

We believe that basic research and the cultivation of scientific knowledge is critical for us to stay connected with our customers and to drive scientific breakthroughs. At NEB, over 30 labs participate in research projects, which are aided by post-doctoral fellows and students in Masters and Ph.D. programs. NEB researchers have authored or co-authored over 1,000 publications (as of 1/17) many of which are in peer-reviewed journals. Further, NEB products have been used successfully in numerous publications by scientists throughout the world.

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Year Title Journal Authors Application(s)
2014 Enhanced gene disruption by programmable nucleases delivered by a minicircle vector. Gene Ther A-Bk Dad, S Ramakrishna, M Song, H Kim Genome Editing
2014 Development of VHH Antibodies against Dengue Virus Type 2 NS1 and Comparison with Monoclonal Antibodies for Use in Immunological Diagnosis PLoS One Fatima A, Wang H, Kang K, Xia L, Wang Y, Ye W, Wang J, Wang X. Phage Display
2014 DevR (DosR) mimetic peptides impair transcriptional regulation and survival of Mycobacterium tuberculosis under hypoxia by inhibiting the autokinase activity of DevS sensor kinase BMC Microbiol Kaur K, Taneja NK, Dhingra S, Tyagi JS Phage Display
2014 Diversity and Expression of MicroRNAs in the Filarial Parasite, Brugia malayi. PLoS One Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA.
2014 Elimination of inter-domain interactions increases the cleavage fidelity of the restriction endonuclease DraIII Protein Cell Zhuo W, Lai X, Zhang L, Chan SH, Li F, Zhu Z, Yang M, Sun D
2014 Efficient DNA ligation in DNA–RNA hybrid helices by Chlorella virus DNA ligase Nucleic Acids Research Gregory J. S. Lohman, Yinhua Zhang, Alexander M. Zhelkovsky, Eric J. Cantor, Thomas C. Evans Jr.
2014 G-CSF does not influence C2C12 myogenesis despite receptor expression in healthy and dystrophic skeletal muscle Front Physiol Wright CR, Brown EL, Della-Gatta PA, Ward AC, Lynch GS, Russell AP Glycobiology
2014 Fusion of catalytically inactive Cas9 to FokI nuclease improves the specificity of genome modification Nat Biotechnol Guilinger JP, Thompson DB, Liu DR Gibson Assembly®
2014 Gene and protein sequence optimization for high-level production of fully active and aglycosylated lysostaphin in Pichia pastoris Appl Environ Microbiol Zhao H, Blazanovic K, Choi Y, Bailey-Kellogg C, Griswold KE Glycobiology
2014 Generation of West Nile virus infectious clones containing amino acid insertions between capsid and capsid anchor Viruses Vandergaast R, Hoover LI, Zheng K, Fredericksen BL Gibson Assembly®
2014 Evaluation of fluorophores to label SNAP-tag fused proteins for multicolor single-molecule tracking microscopy in live cells Bosch PJ, Corrêa IR Jr, Sonntag MH, Ibach J, Brunsveld L, Kanger JS, Subramaniam V
2014 Establishment of a CpG island microarray for analyses of genome-wide DNA methylation in Chinese hamster ovary cells Appl Microbiol Biotechnol Wippermann A, Klausing S, Rupp O, Albaum SP, Büntemeyer H, Noll T, Hoffrogge R
2014 Evolution, mechanisms, and applications of intein-mediated protein splicing J Biol Chem Perler FB, Allewell NM
2014 Functional characterization improves associations between rare non-synonymous variants in CHRNB4 and smoking behavior PLoS One Haller G, Li P, Esch C, Hsu S, Goate AM, Steinbach JH Glycobiology
2014 Expanded genetic codes in next generation sequencing enable decontamination and mitochondrial enrichment PLoS One McKernan KJ, Spangler J, Zhang L, Tadigotla V, McLaughlin S, Warner J, Zare A, Boles RG
2014 Proteomic identification of mammalian cell-surface derived glycosylphosphatidylinositol anchored proteins through selective glycan enrichment Proteomics Cortes LK, Vainauskas S, Dai N, McClung CM, Shah M, Benner JS, Jr IR, VerBerkmoes NC, Taron CH
2014 Genome and Metagenome Sequencing: Using the Human Methyl-Binding Domain to Partition Genomic DNA Derived from Plant Tissues. Applications in Plant Sciences Erbay Yigit, David I. Hernandez, Joshua T. Trujillo, Eileen Dimalanta, and C. Donovan Bailey
2014 Absense of Wolbachia endobacteria in the human parasitic nematode Dracunculus medinensis and two related Dracunculus species infecting wildlife Parasit Vectors Foster, J.M., Landmann, F., Ford, L., Johnston, K.L., Elsasser, S.C., Schulte-Hostedde, A.I., Taylor, M.J., Slatko, B.E.
2014 A Target Repurposing Approach Identifies N-myristoyltransferase as a New Candidate Drug Target in Filarial Nematodes PLoS Negl Trop Dis. Galvin, B.D., Li, Z., Villemaine, E., Poole, C.B., Chapman, M.S., Pollastri, M.P., Wyatt, P.G., Carlow, C.K.
2014 Complementation of essential yeast GPI mannosyltransferase mutations suggests a novel specificity for certain Trypanosoma and Plasmodium PigB proteins PLoS One Cortes, L.K., Scarcelli, J.J., Taron, C.H.
2014 Colonization state influences the hemocyte proteome in a beneficial squid-Vibrio symbiosis Mol Cell Proteomics Schleicher, T.R., VerBerkmoes, N.C., Shah, M., Nyholm, S.V.
2014 A simple isothermal DNA amplification method to screen black flies for Onchocerca Volvulus infection PLoS One Alhassan, A., Makepeace, B.L., LaCourse, E.J., Osei-Atweneboana, M.Y., Carlow, C.K.S.
2014 The other face of restriction: modification-dependent enzymes Nucleic Acids Res. Loenen, W.A.M. and Raleigh, E.A.
2014 Complete genome sequence of a multidrug resistant Salmonella enterica serovar Typhimurium var. 5-strain isolated from chicken breast Genome Announc. Hoffmann, M., Muruvanda, T., Allard, M.W., Korlach, J., Roberts, R.J., Timme, R., Payne, J., McDermott, P.F., Evans, P., Meng, J., Brown, E.W., Zhao, S.
2014 Science for the suffering Scientific American World View Slatko, B.
2014 Traceless splicing enabled by substrate induced activation of the Nostoc punctiforme Npu DnaE intein after mutation of a catalytic cystein to serine J Mol Biol. Cheriyan, M., Chan, S-H., Perler, F.
2014 Gill bacteria enable a novel digestive strategy in a wood-feeding mollusk Proc Natl Acad Sci. O'Connor, R.M., Fung, J.M., Sharp, K.H., Benner, J.S., McClung, C., Cushing, S., Lamkin, E.R., Fomenkov, A.I., Henrissat, B., Londer, Y.Y., et al.
2014 The role of an asymmetrically inherited endosymbiont in robust establishment of host embryonic polarity PLoS Negl. Trop. Dis Landmann, F., Foster, J.M., Michalski, S., Slatko, B., Sullivan, W.
2014 DNA polymerases in biotechnology Front Microbiol. Gardner, A.F. and Kelman, Z.
2014 Notch signaling genes: myogenic DNA hypomethylation and 5-hydroxymethylcytosine Epigenetics Terragni, J., Zhang, G., Sun, Z., Pradhan, S., Song, L., Crawford, G.E., Lacey, M., Ehrlich, M.
2014 Mammalian epigenetic mechanisms IUBMB Life Zhang, G. and Pradhan, S.
2013 A membrane-bound NAC transcription factor, ANAC017, mediates mitochondrial retrograde signaling in Arabidopsis Plant Cell Ng S, Ivanova A, Duncan O, Law SR, Van Aken O, De Clercq I, Wang Y, Carrie C, Xu L, Kmiec B, Walker H, Van Breusegem F, Whelan J, Giraud E Gibson Assembly®
2013 A near-infrared fluorophore for live-cell super-resolution microscopy of cellular proteins. Nature Chemistry Lukinavicius, G., Umezawa, K., Olivier, N., Honigmann, A., Yang, G., Plas, T., Mueller, M., Reymond, L., Correa, I.R., Jr., Luo, Z.-G., Schultz, C., Lemke, E.A., Heppenstall, P., Eggeling, C., Manley, S. and Johnsson, K.
2013 Single-stranded DNA library preparation for the sequencing of ancient or damaged DNA Nat. Protoc. Gansauge MT, Meyer M.
2013 Substrates for Improved Live-Cell Fluorescence Labeling of SNAP-tag Current Pharmaceutical Design Ivan R. Corrêa Jr, Brenda Baker, Aihua Zhang, Luo Sun, Christopher R. Provost, Grazvydas Lukinavicius, Luc Reymond, Kai Johnsson, and Ming-Qun Xu
2013 Segregation of Family A G Protein Coupled Receptor Protomers in the Plasma Membrane Molecular Pharmacology Anthony Gavalas, Tien-Hung Lan, Qiuju Liu, Ivan R. Corrêa, Jr., Jonathan A. Javitch, and Nevin A. Lambert
2013 Selection of a Mimotope Peptide of S-adenosyl-l-homocysteine and Its Application in Immunoassays Molecules Wu C. and Tzertzinis G. 
2013 Targeted delivery of proapoptotic peptides to tumor-associated macrophages improves survival Proc. Natl. Acad. Sci. Cieslewicz, M. et al Phage Display
2013 The COMBREX project design methodology and initial results PLOS ONE Anton BP, Chang YC, Brown P, Choi HP, Faller LL, Guleria J, Hu Z, Klitgord N, Levy-Moonshine A, Maksad A, Mazumdar V, McGettrick M, Osmani L,Pokrzywa R, Rachlin J, Swaminathan R, Allen B, Housman G, Monahan C, Rochussen K, Tao K, Bhagwat AS, Brenner SE, Columbus L, de Crécy-Lagard V, Ferguson D, Fomenkov A, Gadda G, Morgan RD, Osterman AL, Rodionov DA, Rodionova IA, Rudd KE, Söll D, Spain J, Xu SY, Bateman A,Blumenthal RM, Bollinger JM, Chang WS, Ferrer M, Friedberg I, Galperin MY, Gobeill J, Haft D, Hunt J, Karp P, Klimke W, Krebs C, Macelis D, Madupu R, Martin MJ, Miller JH, O'Donovan C, Palsson B, Ruch P, Setterdahl A, Sutton G, Tate J, Yakunin A, Tchigvintsev D, Plata G, Hu J, Greiner R, Horn D,Sjölander K, Salzberg SL, Vitkup D, Letovsky S, Segrè D, DeLisi C, Roberts RJ, Steffen M, Kasif S.
2013 The complex methylome of the human gastric pathogen Helicobacter pylori Nucleic Acids Research Juliane Krebes, Richard D. Morgan, Boyke Bunk, Cathrin Spröer, Khai Luong, Raphael Parusel, Brian P. Anton, Christoph König, Christine Josenhans, Jörg Overmann, Richard J. Roberts, Jonas Korlach, Sebastian Suerbaum
2013 Targeted drug delivery systems mediated by a novel peptide in breast cancer therapy and imaging PLoS One Lu, R.-M. et al Phage Display
2013 Rapid, modular and reliable construction of complex mammalian gene circuits Nucleic Acids Res Guye P, Li Y, Wroblewska L, Duportet X, Weiss R Gibson Assembly®
2013 Restriction endonuclease TseI cleaves A:A and T:T mismatches in CAG and CTG repeats Nucleic Acids Res Ma L, Chen K, Clarke DJ, Nortcliffe CP, Wilson GG, Edwardson JM, Morton AJ, Jones AC, Dryden DT
2013 Protein engineering: single or multiple site-directed mutagenesis Methods Mol Biol. Hsieh, P.C. and Vaisvila, R.
2013 Quantifying Elongation Rhythm during Full-Length Protein Synthesis Rosenblum G, Chen C, Kaur J, Cui X, Zhang H, Asahara H, Chong S, Smilansky Z, Goldman YE, Cooperman BS.
2013 Ribosome profiling provides evidence that large noncoding RNAs do not encode proteins Cell Guttman M, Russell P, Ingolia NT, Weissman JS, Lander ES
2013 Role of DNA methylation in expression and transmission of porcine endogenous retroviruses. PLOS ONE Matousková, M., Vesely, P., Daniel, P., Mattiuzzo, G., Hector, R.D., Scobie, L., Takeuchi, Y. and Hejnar, J.
2013 ROLE OF HUMAN HYPOXANTHINE GUANINE PHOSPHORIBOSYLTRANSFERASE IN ACTIVATION OF THE ANTIVIRAL AGENT T-705 (FAVIPIRAVIR) Molecular Pharmacology Fast Forward Lieve Naesens, Luke Guddat, Dianne Keough, André B.P. van Kuilenburg, Judith Meijer, Johan Vande Voorde and Jan Balzarini
2013 RNA-Methylation-Dependent RNA Processing Controls the Speed of the Circadian Clock Cell Fustin, J.-M. et al.
2013 RNAi triggered by specialized machinery silences developmental genes and retrotransposons Nature Yamanaka, S., Mehta, S., Reyes-Turcu, F.E., Zhuang, F., Fuchs, R.T., Rong, Y., Robb, G.B. and Grewal, S.I.