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Publications

We believe that basic research and the cultivation of scientific knowledge is critical for us to stay connected with our customers and to drive scientific breakthroughs. At NEB, over 30 labs participate in research projects, which are aided by post-doctoral fellows and students in Masters and Ph.D. programs. NEB researchers have authored or co-authored over 1,000 publications (as of 1/17) many of which are in peer-reviewed journals. Further, NEB products have been used successfully in numerous publications by scientists throughout the world.

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Year Title Journal Authors Application(s)
2014 Biomimetic Magnetite Formation From Biocombinatorial Approaches to Mineralization Effects Langmuir Baumgartner J, Carillo MA, Eckes KM, Werner P, Faivre D. Phage Display
2014 Characterization of cleavage intermediate and star sites of RM.Tth111II. Sci Rep Zhu, Z., Guan, S., Robinson, D., El Fezzazi, H., Quimby, A. and Xu, S-Y.
2014 Boronic acid-mediated polymerase chain reaction for gene- and fragment-specific detection of 5-hydroxymethylcytosine Nucleic Acids Res Zhao C, Wang H, Zhao B, Li C, Yin R, Song M, Liu B, Liu Z, Jiang G
2014 Anti-Wolbachia drug discovery and development: safe macrofilaricides for onchocerciasis and lymphatic filariasis Parasitology/FirstView Article Taylor, M.J., Hoerauf, A., Townson, S., Slatko, B.E. and Ward, S.A.
2014 Sequencing of captive target transcripts identifies the network of regulated genes and functions of primate-specific miR-522 Cell Rep Tan SM, Kirchner R, Jin J, Hofmann O, McReynolds L, Hide W, Lieberman J
2014 Role of lipid rafts and GM1 in the segregation and processing of prion protein PLoS One Botto L, Cunati D, Coco S, Sesana S, Bulbarelli A, Biasini E, Colombo L, Negro A, Chiesa R, Masserini M, Palestini P Glycobiology and Proteomics
2014 Serine and proline-rich ligands enriched via phage-display technology show preferential binding to BCR/ABL expressing cells Hematol Oncol Stem Cell Ther Shires K, Shankland I, Mowla S, Njikan S, Jaymacker J, Novitzky N Phage Display
2014 Spontaneous in vitro senescence of glioma cells confirmed by an antibody against IDH1R132H Anticancer Res Stoczynska-Fidelus E, Och W, Rieske P, Bienkowski M, Banaszczyk M, Winiecka-Klimek M, Zieba J, Janik K, Rosiak K, Treda C, Stawski R, Radomiak-Zaluska A, Piaskowski S
2014 SpeedyGenes: an improved gene synthesis method for the efficient production of error-corrected, synthetic protein libraries for directed evolution Protein Eng Des Sel Currin A, Swainston N, Day PJ, Kell DB
2014 Protein synthesis using a reconstituted cell-free system Curr Protoc Mol Biol Tuckey C, Asahara H, Zhou Y, Chong S
2014 Protein splicing: how inteins escape from precursor proteins J Biol Chem Mills KV, Johnson MA, Perler FB
2014 RNA-RNA Interactions Enable Specific Targeting of Noncoding RNAs to Nascent Pre-mRNAs and Chromatin Sites Cell Jesse M. Engreitz, Klara Sirokman, Patrick McDonel, Alexander A. Shishkin, Christine Surka, Pamela Russell, Sharon R. Grossman, Amy Y. Chow, Mitchell Guttman, and Eric S. Lander
2014 Rapid and Efficient Assembly of Transcription Activator-Like Effector Genes by USER Cloning J Genet Genomics Wang S, Li W, Wang S, Hu B USER™ Cloning
2014 Structure of the Trehalose-6-phosphate Phosphatase from Brugia malayi Reveals Key Design Principles for Anthelmintic Drugs PLoS Pathog Farelli JD, Galvin BD, Li Z, Liu C, Aono M, Garland M, Hallett OE, Causey TB, Ali-Reynolds A, Saltzberg DJ, Carlow CK, Dunaway-Mariano D, Allen KN
2014 Structure of a Naegleria Tet-like dioxygenase in complex with 5-methylcytosine DNA Nature Hashimoto H, Pais JE, Zhang X, Saleh L, Fu ZQ, Dai N, Corrêa IR Jr, Zheng Y, Cheng X
2014 The ambrosia symbiosis is specific in some species and promiscuous in others: evidence from community pyrosequencing. ISME J Martin Kostovcik, Craig C Bateman, Miroslav Kolarik, Lukasz L Stelinski, Bjarte H Jordal, Jiri Hulcr High-Fidelity PCR
2014 The complex methylome of the human gastric pathogen Helicobacter pylori Nucleic Acids Res Krebes J, Morgan RD, Bunk B, Spröer C, Luong K, Parusel R, Anton BP, König C, Josenhans C, Overmann J, Roberts RJ, Korlach J, Suerbaum S
2014 The CLO3403/CLO3404 Two-Component System of Clostridium botulinum E1 Beluga Is Important for Cold Shock Response and Growth at Low Temperatures Appl Environ Microbiol Mascher G, Derman Y, Kirk DG, Palonen E, Lindström M, Korkeala H
2014 Strand Invasion Based Amplification (SIBA®): A Novel Isothermal DNA Amplification Technology Demonstrating High Specificity and Sensitivity for a Single Molecule of Target Analyte PLoS One Hoser MJ, Mansukoski HK, Morrical SW, Eboigbodin KE
2014 Stable cell surface expression of GPI-anchored proteins, but not intracellular transport, depends on their fatty acid structure Traffic Janesh, N. Correa, I.R., Jr. and Watanabe, R.
2014 Structural basis for Klf4 recognition of methylated DNA Nucleic Acids Research Yiwei Liu, Yusuf Olatunde Olanrewaju, Yu Zheng, Hideharu Hashimoto, Robert M. Blumenthal, Xing Zhang, Xiaodong Cheng
2014 Structure of 5-hydroxymethylcytosine-specific restriction enzyme AbaSI in complex with DNA Nucleic Acids Res Horton JR, Borgaro JG, Griggs RM, Quimby A, Guan S, Zhang X, Wilson GG, Zheng Y, Zhu Z, Cheng X
2014 Structure and mutagenesis of the DNA modification-dependent restriction endonuclease AspBHI Sci Rep Horton JR, Nugent RL, Li A, Mabuchi MY, Fomenkov A, Cohen-Karni D, Griggs RM, Zhang X, Wilson GG, Zheng Y, Xu SY, Cheng X
2014 Myogenic differential methylation: diverse associations with chromatin structure Biology (Basel) Chandra S, Baribault C, Lacey M, Ehrlich M Epigenetics
2014 Mutations in four glycosyl hydrolases reveal a highly coordinated pathway for rhodopsin biosynthesis and N-glycan trimming in Drosophila melanogaster PLoS Genet Rosenbaum EE, Vasiljevic E, Brehm KS, Colley NJ Glycobiology and Proteomics
2014 Neurospora crassa Female Development Requires the PACC and Other Signal Transduction Pathways, Transcription Factors, Chromatin Remodeling, Cell-To-Cell Fusion, and Autophagy PLoS One Chinnici JL, Fu C, Caccamise LM, Arnold JW, Free SJ Gibson Assembly®
2014 Ordering of mutations in preinvasive disease stages of esophageal carcinogenesis Nat Genet Weaver JM, Ross-Innes CS, Shannon N, Lynch AG, Forshew T, Barbera M, Murtaza M, Ong CA, Lao-Sirieix P, Dunning MJ, Smith L, Smith ML, Anderson CL, Carvalho B, O'Donovan M, Underwood TJ, May AP, Grehan N, Hardwick R, Davies J, Oloumi A, Aparicio S, Caldas C, Eldridge MD, Edwards PA, Rosenfeld N, Tavaré S, Fitzgerald RC; OCCAMS Consortium
2014 Objective: biochemical function Front Genet Anton BP, Kasif S, Roberts RJ, Steffen M
2014 Modular assembly of designer PUF proteins for specific post-transcriptional regulation of endogenous RNA J Biol Eng Abil Z, Denard CA, Zhao H DNA Assembly and Cloning,Golden Gate Assembly
2014 Modification-dependent restriction endonuclease, MspJI, flips 5-methylcytosine out of the DNA helix Nucleic Acids Research Horton, J.R., Wang, H., Mabuchi, M.Y., Zhang, X., Roberts, R.J., Zheng, Y., Wilson, G.G., Cheng, X
2014 Molecular evolution of the Yap/Yorkie proto-oncogene and elucidation of its core transcriptional program Mol Biol Evol Ikmi A, Gaertner B, Seidel C, Srivastava M, Zeitlinger J, Gibson MC Gibson Assembly®
2014 Multiplex genome engineering in human cells using all-in-one CRISPR/Cas9 vector system Sci Rep Sakuma T, Nishikawa A, Kume S, Chayama K, Yamamoto T Golden Gate Assembly
2014 Molecular evolution of the Yap/Yorkie proto-oncogene and elucidation of its core transcriptional program Mol Biol Evol Ikmi A, Gaertner B, Seidel C, Srivastava M, Zeitlinger J, Gibson MC Gibson Assembly®
2014 Procerain B, a cysteine protease from Calotropis procera, requires N-terminus pro-region for activity: cDNA cloning and expression with pro-sequence. Protein Expr Purif Vidhyadhar Nandana, Sushant Singh, Abhay Narayan Singh, Vikash Kumar Dubey High-Fidelity PCR
2014 Probing homodimer formation of epidermal growth factor receptor by selective crosslinking Eur J Med Chem Sun X, Dusserre-Bresson F, Baker B, Zhang A, Xu P, Fibbe C, Noren CJ, Corrêa IR Jr, Xu MQ
2014 Production of Disulfide-Bonded Proteins in Escherichia coli Curr Protoc Mol Biol Ke N, Berkmen M
2014 Protein-protein interactions leading to the recruitment of the host DNA sliding clamp by the hyperthermophilic archaeal virus SIRV2 J Virol Gardner AF, Bell SD, White MF, Prangishvili D, Krupovic M
2014 Prospective identification of parasitic sequences in phage display screens Nucleic Acids Res Matochko WL, Cory Li S, Tang SK, Derda R Phage Display
2014 p19-mediated enrichment and detection of siRNAs Methods Mol Biol Jin J, McReynolds LA, Gullerova M
2014 Overview of cell-free protein synthesis: historic landmarks, commercial systems, and expanding applications Curr Protoc Mol Biol Chong S
2014 PCR amplification of a triple-repeat genetic target directly from whole blood in 15 minutes as a proof-of-principle PCR study for direct sample analysis for a clinically relevant target BMC Med Genet Connelly CM1, Porter LR2, TerMaat JR
2014 Polynucleotide 3'-terminal phosphate modifications by RNA and DNA ligases Journal of Biological Chemistry Alexander M. Zhelkovsky and Larry A. McReynolds
2014 Phosphorylation decreases ubiquitylation of the thiazide-sensitive cotransporter NCC and subsequent clathrin-mediated endocytosis J Biol Chem Rosenbaek LL, Kortenoeven ML, Aroankins TS, Fenton RA Glycobiology and Proteomics
2014 The N-terminal domain modulates α-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA) receptor desensitization J Biol Chem Möykkynen T, Coleman SK, Semenov A, Keinänen K Glycobiology and Proteomics
2014 Transient accumulation of 5-carboxylcytosine indicates involvement of active demethylation in lineage specification of neural stem cells Cell Rep Wheldon LM, Abakir A, Ferjentsik Z, Dudnakova T, Strohbuecker S, Christie D, Dai N, Guan S, Foster JM, Corrêa IR Jr, Loose M, Dixon JE, Sottile V, Johnson AD, Ruzov A
2014 Transcriptomic analysis of carboxylic acid challenge in Escherichia coli: beyond membrane damage PLoS One Royce LA, Boggess E, Fu Y, Liu P, Shanks JV, Dickerson J, Jarboe LR Gibson Assembly®
2014 Trypanosome MKT1 and the RNA-binding protein ZC3H11: interactions and potential roles in post-transcriptional regulatory networks Nucleic Acids Res Singh A, Minia I, Droll D, Fadda A, Clayton C, Erben E
2014 Type I restriction enzymes and their relatives Nucleic Acids Res Loenen WA, Dryden DT, Raleigh EA, Wilson GG
2014 Tuning the electrical properties of the heart by differential trafficking of KATP ion channel complexes J Cell Sci Arakel EC, Brandenburg S, Uchida K, Zhang H, Lin YW, Kohl T, Schrul B, Sulkin MS, Efimov IR, Nichols CG, Lehnart SE, Schwappach B Glycobiology and Proteomics
2014 The Serine-Threonine Protein Kinase PAK4 Is Dispensable in Zebrafish: Identification of a Morpholino-Generated Pseudophenotype PLoS One Law SH, Sargent TD Gibson Assembly®