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Publications

We believe that basic research and the cultivation of scientific knowledge is critical for us to stay connected with our customers and to drive scientific breakthroughs. At NEB, over 30 labs participate in research projects, which are aided by post-doctoral fellows and students in Masters and Ph.D. programs. NEB researchers have authored or co-authored over 1,000 publications (as of 1/17) many of which are in peer-reviewed journals. Further, NEB products have been used successfully in numerous publications by scientists throughout the world.

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Year Title Journal Authors Application(s)
2015 Efficient expression of full-length antibodies in the cytoplasm of engineered bacteria Nat Commun. Robinson MP, Ke N, Lobstein J, Peterson C, Szkodny A, Mansell TJ, Tuckey C, Riggs PD, Colussi PA, Noren CJ, Taron CH, DeLisa MP, Berkmen M.
2015 Visual detection of isothermal nucleic acid amplification using pH-sensitive dyes. Biotechniques Tanner NA, Zhang Y, Evans TC Jr
2015 Genome Filtering for New DNA Biomarkers of Loa loa Infection Suitable for Loop-Mediated PLoS One Poole CB, Ettwiller L, Tanner NA, Evans TC Jr., Wanji S,Carlow CK
2015 Environmental marine pathogen isolation using mesocosm culture of sharpsnout seabream: striking genomic and morphological features of novel Endozoicomonas sp. Sci Rep. Katharios, P. et al.
2015 Transition in sexual system and sex chromosome evolution in the tadpole shrimp Triops cancriformis. Heredity (Edinb). Mathers TC, Hammond RL, Jenner RA, Hänfling B, Atkins J, Gómez A.
2015 Trans-Pacific RAD-Seq population genomics confirms introgressive hybridization in Eastern Pacific Pocillopora corals. Mol Phylogenet Evol. Combosch DJ, Vollmer SV.
2015 Two new phragmotic ant species from Africa: morphology and next-generation sequencing solve a caste association problem in the genus Carebara Westwood. Zookeys. Fischer G, Azorsa F, Garcia FH, Mikheyev AS, Economo EP.
2015 The evolutionary history of the embiotocid surfperch radiation based on genome-wide RAD sequence data. Mol Phylogenet Evol. Longo G, Bernardi G.
2015 The use of museum specimens with high-throughput DNA sequen. J Hum Evol. Burrell AS, Disotell TR, Bergey CM.
2015 Thousands of RAD-seq Loci Fully Resolve the Phylogeny of the Highly Disjunct Arctic-Alpine Genus Diapensia (Diapensiaceae). PLoS One. Hou Y, Nowak MD, Mirré V, Bjorå CS, Brochmann C, Popp M.
2015 Using Next Generation RAD Sequencing to Isolate Multispecies Microsatellites for Pilosocereus (Cactaceae). PLoS One. Bonatelli IA, Carstens BC, Moraes EM.
2015 SNP-based genetic linkage map of tobacco (Nicotiana tabacum L.) using next-generation RAD sequencing. J Biol Res (Thessalon). Xiao B, Tan Y, Long N, Chen X, Tong Z, Dong Y, Li Y.
2015 High-Density Genetic Mapping with Interspecific Hybrids of Two Sea Urchins, Strongylocentrotus nudus and S. intermedius, by RAD Sequencing. PLoS One. Zhou Z, Liu S, Dong Y, Gao S, Chen Z, Jiang J, Yang A, Sun H, Guan X, Jiang B, Wang B.
2015 High-density interspecific genetic maps of kiwifruit and the identification of sex-specific markers. DNA Res. Zhang Q, Liu C, Liu Y, VanBuren R, Yao X, Zhong C, Huang H.
2015 Identification of single nucleotide polymorphism markers associated with bacterial cold water disease resistance and spleen size in rainbow trout. Front Genet. Liu S, Vallejo RL, Palti Y, Gao G, Marancik DP, Hernandez AG, Wiens GD.
2015 Contrasting genetic structure between mitochondrial and nuclear markers in the dengue fever mosquito from Rio de Janeiro: implications for vector control. Evol Appl. Rašić G, Schama R, Powell R, Maciel-de Freitas R, Endersby-Harshman NM, Filipović I, Sylvestre G, Máspero RC, Hoffmann AA.
2015 Evolution of stickleback in 50 years on earthquake-uplifted islands. Proc Natl Acad Sci U S A Lescak EA, Bassham SL, Catchen J, Gelmond O, Sherbick ML, von Hippel FA, Cresko WA.
2015 Evolutionary and biogeographical patterns of barnacles from deep-sea hydrothermal vents. Mol Ecol. Herrera S, Watanabe H, Shank TM.
2015 RAD sequencing and genomic simulations resolve hybrid origins within North American Canis. Bio Lett. Rutledge LY, Devillard S, Boone JQ, Hohenlohe PA, White BN.
2015 Restriction Site-Associated DNA Sequencing (RAD-seq) Reveals an Extraordinary Number of Transitions among Gecko Sex-Determining Systems. Mol Biol Evol. Gamble T, Coryell J, Ezaz T, Lynch J, Scantlebury DP, Zarkower D.
2015 Sequence-tagged high-density genetic maps of Zoysia japonica provide insights into genome evolution in Chloridoideae. Plant J. Wang F, Singh R, Genovesi AD, Wai CM, Huang X, Chandra A, Yu Q.
2015 Leaf margin phenotype-specific restriction-site-associated DNA-derived markers for pineapple (Ananas comosus L.). Breed Sci. Urasaki N, Goeku S, Kaneshima R, Takamine T, Tarora K, Takeuchi M, Moromizato C, Yonamine K, Hosaka F, Terakami S, Matsumura H, Yamamoto T, Shoda M.
2015 Linkage disequilibrium network analysis (LDna) gives a global view of chromosomal inversions, local adaptation and geographic structure. Mol Ecol Resour. Kemppainen P, Knight CG, Sarma DK, Hlaing T, Prakash A, Maung Maung YN, Somboon P, Mahanta J, Walton C.
2015 Population genomic evidence for adaptive differentiation in Baltic Sea three-spined sticklebacks. BMCBiol. Guo B, DeFaveri J, Sotelo G, Nair A, Merilä J.
2015 Comparative Population Genomics of African Montane Forest Mammals Support Population Persistence across a Climatic Gradient and Quaternary Climatic Cycles. PLoS One. Demos TC, Kerbis Peterhans JC, Joseph TA, Robinson JD, Agwanda B, Hickerson MJ.
2015 Complete Genome Sequence of the freshwater colorless sulfur bacterium Beggiatoa leptomitiformis neotype strain D-402T Genome Announc. Fomenkov, A., Vincze, T., Grabovich, M.Y., Dubinina, G., Orlova, M., Belousova, E., Roberts, R.J.
2015 Complete Genome Sequence of Streptomyces sp. strain CCM_MD2014, isolated from topsoil in Woods Hole, Massachusetts Genome Announc. Mariita, R.M., Bhatnagar, S., Hanselmann, K., Hossain, M.J., Korlach, J., Boitano, M., Roberts, R.J., Liles, M.R., Moss, A.G., Leadbetter, J.R., Newman, D.K., Dawson, S.C.
2015 DNA polymerases in biotechnology Front Microbiol. Gardner, A.F. and Kelman, Z.
2015 Differential connectivity of splicing activators and repressors to the human spliceosome Genome Biol. Akerman, M., Fregoso, Ol., Das, S., Ruse, C., Jensen, M.A., Pappin, D.J., Zhang, M.Q., Krainer, A.R.
2015 Complete Genome Sequence of Curtobacterium sp. strain MR_MD2014, isolated from topsoil in Woods Hole, Massachusetts Genome Announc. Mariita, R.M., Bhatnagar, S., Hanselmann, K., Hossain, M.J., Korlach, J., Boitano, M., Roberts, R.J., Liles, M.R., Moss, A.G., Leadbetter, J.R., Newman, D.K., Dawson, S.C.
2015 Complete Genome Sequence Analysis of Bacillus Subtilis T30 Genome Announc. Xu, S-Y., Boitano, M., Clark, T.A., Vincze, T., Fomenkov, A., Kumar, S., Too, PH-M., Gonchar, D., Degtyarev, S.K. and Roberts, R.J.
2015 A Sensitive Approach to Map Genome-wide 5-Hydroxymethylcytosine and 5-Formylcytosine at Single-Base Resolution Mol. Cell Sun, Z., Dai, N., Borgaro, J.G., Quimby, A., Sun, D., Correa, I.R., Jr., Zheng, Y., Zhu, Z. and Guan, S.
2015 Single-molecule visualization of a formin-capping protein 'decision complex' at the actin filament barbed end Nat Commun. Bombardier, J.P., Eskin, J.A., Jaiswal, R., Correa, I.R., Jr., Xu, M.Q., Goode, B.L. and Gelles, J.
2015 Restriction Cascade Exponential Amplification (RCEA) assay with an attomolar detection limit: a novel, highly specific, isothermal alternative to qPCR Scientific Reports
2015 The roles of family B and d DNA polymerases in thermococcus species 9 degrees n okazaki fragment maturation J Biol Chem. Greenough, L., Kelman, Z. and Gardner, A.F.
2015 The mRNA decay factor PAT1 functions in a pathway including MAP kinase 4 and immune receptor SUMM2 Roux, M.E., Rasmussen, M.W., Palma, K., Lolle, S., Regue, A.M., Bethke, G., Glazebrook, J., Zhang, W., Sieburth, L., Larsen, M.R., Mundy, J., Petersen, M.
2015 Rescue of cells from apoptosis increases DNA repair in UVB exposed cells: implications for the DNA damage response Toxicol. Res. Karbaschi, Mahsa., Macip, Salvador., Mistry, Vilas., Abbas, Hussein H.K., Delinassios, George J., Evans, Mark D., Young, Antony R., Cooke, Marcus S.
2015 Expanding the MDx toolbox for filarial diagnosis and surveillance Trends Parasitol. Alhassan, A., Li, Z., Poole, C.B. and Carlow, C.K.S.
2015 Evaluation of a glycoengineered monoclonal antibody via LC-MS analysis in combination with multiple enzymatic digestion MAbs Liu R, Giddens J, McClung CM, Magnelli PE, Wang LX, Guthrie EP.
2015 Recognition and cleavage of 5-methylcytosine DNA by bacterial SRA-HNH proteins Nucleic Acids Res. Han, T., Yamada-Mabuchi, M., Zhao, G., Li, L., Liu, G., Oui, H-Y, Deng, Z., Zheng, Y. and He, X.
2015 Expression and purification of single-chain Type IV restriction enzyme Eco94GmrSD and determination of it substrate preference Scientific Reports He, X., Hull, V., Thomas, J.A., Fu, X., Gidwani, S., Gupta, Y.K., Black, L.W. and Xu, S-Y.
2014 A continuous-exchange cell-free protein synthesis system based on extracts from cultured insect cells PLoS One Stech M, Quast RB, Sachse R, Schulze C, Wüstenhagen DA, Kubick S Glycobiology
2014 A crime against humanity. China Policy Review Roberts, R.J.
2014 A Modified Janus Cassette (Sweet Janus) to Improve Allelic Replacement Efficiency by High-Stringency Negative Selection in Streptococcus pneumoniae PLoS One Li Y, Thompson CM, Lipsitch M Gibson Assembly®
2014 A Modular Plasmid Assembly Kit for Multigene Expression, Gene Silencing and Silencing Rescue in Plants PLoS One Binder A, Lambert J, Morbitzer R, Popp C, Ott T, Lahaye T, Parniske M DNA Assembly and Cloning,Golden Gate Assembly
2014 A versatile system for USER cloning-based assembly of expression vectors for mammalian cell engineering PLoS One Lund AM, Kildegaard HF, Petersen MB, Rank J, Hansen BG, Andersen MR, Mortensen UH USER™ Cloning
2014 A trimeric lipoprotein assists in trimeric autotransporter biogenesis in enterobacteria J Biol Chem Grin I, Hartmann MD, Sauer G, Hernandez Alvarez B, Schütz M, Wagner S, Madlung J, Macek B, Felipe-Lopez A, Hensel M, Lupas A, Linke D Phage Display
2014 An RNA aptamer that specifically binds to the glycosylated hemagglutinin of avian influenza virus and suppresses viral infection in cells PLoS One Kwon HM, Lee KH, Han BW, Han MR, Kim DH, Kim DE Glycobiology
2014 Analysis of hundreds of cis-regulatory landscapes at high resolution in a single, high-throughput experiment Nat Genet Hughes J.R., Roberts N., McGowan S., Hay D., Giannoulatou E., Lynch M., De Gobbi M., Taylor S., Gibbons R., Higgs D.R. Epigenetics,DNA Methylation Analysis,Restriction Enzymes for Epigenetics
2014 A robust TALENs system for highly efficient mammalian genome editing Sci Rep Feng Y, Zhang S, Huang X DNA Assembly and Cloning,Golden Gate Assembly