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Publications

We believe that basic research and the cultivation of scientific knowledge is critical for us to stay connected with our customers and to drive scientific breakthroughs. At NEB, over 30 labs participate in research projects, which are aided by post-doctoral fellows and students in Masters and Ph.D. programs. NEB researchers have authored or co-authored over 1,000 publications (as of 1/17) many of which are in peer-reviewed journals. Further, NEB products have been used successfully in numerous publications by scientists throughout the world.

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Year Title Journal Authors Application(s)
2015 TALEN-mediated targeting of HPV oncogenes ameliorates HPV-related cervical malignancy. J Clin Invest Zheng Hu, Wencheng Ding, Da Zhu, Lan Yu, Xiaohui Jiang, Xiaoli Wang, Changlin Zhang, Liming Wang, Teng Ji, Dan Liu, Dan He, Xi Xia, Tao Zhu, Juncheng Wei, Peng Wu, Changyu Wang, Ling Xi, Qinglei Gao, Gang Chen, Rong Liu, Kezhen Li, Shuang Li, Shixuan Wang, Jianfeng Zhou, Ding Ma, Hui Wang Genome Editing
2015 Targeted Glycoengineering Extends the Protein N-glycosylation Pathway in the Silkworm Silk Gland Sci Rep Asazuma HM., Sohn BH., Kim Y.S., Kuo CW., Khoo KH., Kucharski CA., Fraser MJ., Jarvis DL.
2015 Caspr2 autoantibodies target multiple epitopes. Neurol Neuroimmunol Neuroinflamm Olsen AL., Lai Y., Dalmau J., Scherer SS., Lancaster E.
2015 CD24 tracks divergent pluripotent states in mouse and human cells. Nat Commun Shakiba N., White C.A., Lipsitz Y.Y., Yachie-Kinoshita A., Tonge P.D., Hussein S.M.I., Puri M.C., Elbaz J., Morrissey-Scoot J., Li M., Munoz J., Benevento M., Rogers I.M., Hanna J.H., Heck A.J.R., Wollscheid B., Nagy A., Zandstra P.W.
2015 Cell- and Protein-Directed Glycosylation of Native Cleaved HIV-1 Envelope. J Virol Pritchard L.K., Harvey D.J., Bonomelli C., Crispin M., Doores K.J.
2015 Binding of 14-3-3 reader proteins to phosphorylated DNMT1 facilitates Nucleic Acids Res Estève P., Zhang G., Ponnaluri V., Kanneganti Epigenetics
2015 Biochemical characterization of a Naegleria TET-like oxygenase and its application in single molecule sequencing of 5-methylcytosine Proc Natl Acad Sci USA Pais, J.E., Dai, N., Tamanaha, E., Vaisvila, R., Fomenkov, A.I., Bitinaite, J., Sun, Z., Guan, S., Correa, I.R. Jr., Noren, C.J., Cheng, X., Roberts, R.J., Zheng, Y. and Saleh, L.
2015 Bovine embryo sex determination by multiplex loop-mediated isothermal amplification. Theriogenology Trisadee Khamlor, Petai Pongpiachan, Rangsun Parnpai, Kanchana Punyawai, Siwat Sangsritavong, Nipa Chokesajjawatee Isothermal Amplification
2015 Clinical Evaluation of a Loop-Mediated Isothermal Amplification (LAMP) Assay for Rapid Detection of Neisseria meningitidis in Cerebrospinal Fluid. PLoS One DoKyung Lee, Eun Jin Kim, Paul E Kilgore, Soon Ae Kim, Hideyuki Takahashi, Makoto Ohnishi, Dang Duc Anh, Bai Qing Dong, Jung Soo Kim, Jun Tomono, Shigehiko Miyamoto, Tsugunori Notomi, Dong Wook Kim, Mitsuko Seki Isothermal Amplification
2015 Complete genome sequence and methylome analysis of bacillus strain x1 Genome Announc Fomenkov, A., Lunnen, K.D., Zhu, Z., Anton, B.P., Wilson, G.G., Vincze, T. and Roberts, R.J.
2015 Complete Genome Sequence of Enteroinvasive Escherichia coli O96:H19 Associated with a Severe Foodborne Outbreak Genome Announc Pettengill EA, Hoffmann M, Binet R, Roberts RJ, Payne J, Allard M, Michelacci V, Minelli F, Morabito S.
2015 Complete Genome Sequence of ER2796, a DNA Methyltransferase-Deficient Strain of Escherichia coli K-12 PLoS One Anton, B.P., Mongodin, E.F., Agrawal, S., Fomenkov, A., Byrd, D.R., Roberts, R.J. and Raleigh, E.A.
2015 Cloning Should Be Simple: Escherichia coli DH5α-Mediated Assembly of Multiple DNA Fragments with Short End Homologies PLoS One Kostylev M., Otwell A.E., Richardson R., Suzuki Y.
2015 Comparative Analysis of the Glycosylation Profiles of Membrane-Anchored HIV-1 Envelope Glycoprotein Trimers and Soluble gp140. J Virol Go E.P., Herschhorn A., Gu C., Castillo-Menendez L., Zhang S., Mao Y., Chen H., Ding H., Wakefield J.K., Hua D., Liao H.X., Kappes J.C., Sodroski J., Desaire H.
2015 Comparison of loop-mediated isothermal amplification and real-time PCR for detecting Bordetella pertussis. J Med Microbiol Mohammad Reza Allahyar Torkaman, Kazunari Kamachi, Vajihe Sadat Nikbin, Masoumeh Nakhost Lotfi, Fereshteh Shahcheraghi Isothermal Amplification
2015 Antigenic properties of the human immunodeficiency virus envelope glycoprotein gp120 on virions bound to target cells PLoS Pathog Meron Mengistu, Krishanu Ray, George K Lewis, Anthony L DeVico SNAP Cell,SNAP Surface
2015 Alternative 3' UTRs act as scaffolds to regulate membrane protein localization. Nature Binyamin D Berkovits, Christine Mayr High-Fidelity PCR
2015 An alternative pluripotent state confers interspecies chimaeric competency. Nature Jun Wu, Daiji Okamura, Mo Li, Keiichiro Suzuki, Chongyuan Luo, Li Ma, Yupeng He, Zhongwei Li, Chris Benner, Isao Tamura, Marie N Krause, Joseph R Nery, Tingting Du, Zhuzhu Zhang, Tomoaki Hishida, Yuta Takahashi, Emi Aizawa, Na Young Kim, Jeronimo Lajara, Pedro Guillen, Josep M Campistol, Concepcion Rodriguez Esteban, Pablo J Ross, Alan Saghatelian, Bing Ren, Joseph R Ecker, Juan Carlos Izpisua Belmonte High-Fidelity PCR
2015 An IL-27/NFIL3 signalling axis drives Tim-3 and IL-10 expression and T-cell dysfunction Nat Commun Zhu, C., Sakuishi, K., Xiao, S., Sun, Z., Zaghouani, S., Gu, G., Wang, C., Tan, D.J., Wu, C., Rangachari, M., Pertel, T., Jin, H.T., Ahmed, R., Anderson, A.C., Kuchroo, V.K.
2015 Adapting capillary gel electrophoresis as a senisitive, high-throughput method to accelerate characterization of nucleic acid metabolic enzymes Nucleic Acids Res Greenough, L., Schermerhorn K.M., Mazzola, L., Bybee, J., Rivizzigno, D., Cantin, E., Slatko, B.E., Gardner, A.F.
2015 Complete Genome Sequence of Salmonella enterica subsp. enterica Serovar Agona 460004 2-1, Associated with a Multistate Outbreak in the United States Genome Announc Hoffmann M, Payne J, Roberts RJ, Allard MW, Brown EW, Pettengill JB
2015 Glycation of vitronectin inhibits VEGF-induced angiogenesis by uncoupling VEGF receptor-2-αvβ3 integrin cross-talk Mol Biol Cell Wang L., Zhang X., Pang N., Xiao L., Li Y., Chen N., Ren M., Deng X., Wu J.
2015 Hepatic Stellate Cell Transdifferentiation Involves Genome-Wide Remodeling of the DNA Methylation Landscape J Hepatol Page A., Paoli P., Salvador E., White S., French J., Mann J. Epigenetics
2015 Highly efficient CRISPR/Cas9-mediated TAR cloning of genes and chromosomal loci from complex genomes in yeast Nucleic Acids Res Lee, NC., Larionov, V., Kouprina, N.
2015 GADD45a physically and functionally interacts with TET1Publication Differentiation Kienhöfer S., Musheev M., Stapf U., Helm M., Schomacher L., Niehrs C., Schäfer A. Epigenetics
2015 Genetically encoded fragment-based discovery of glycopeptide ligands for carbohydrate-binding proteins J Am Chem Soc Ng, S., Lin, E., Kitov, P.I., Tjhung, K.F., Gerlits, O.O., Deng, L., Kasper, B., Sood, A., Paschal, B.M., Zhang, P., Ling, C.C., Klassen, J.S., Noren, C.J., Mahal, L.K., Woods, R.J., Coates, L. and Derda, R.
2015 Genome-Wide Methylation Patterns in Salmonella enterica Subsp. enterica Serovars PLoS One Pirone-Davies, C., Hoffmann, M., Roberts, R.J., Muruvanda, T., Timme, R.E., Strain, E., Luo, Y., Payne, J., Luong, K., Song, Y., Tsai, Y.C., Boitano, M., Clark, T.A., Korlach, J., Evans, P.S., Allard, M.W.
2015 Human sialic acid acetyl esterase: Towards a better understanding of a puzzling enzyme. Glycobiology Orizio F., Damiati E., Giacopuzzi E., Benaglia G., Pianta S., Schauer R., Schwartz-Albiez R., Borsani G., Bresciani R., Monti E.
2015 Iron-induced Local Complement Component 3 (C3) Up-regulation via Non-canonical Transforming Growth Factor (TGF)-β Signaling in the Retinal Pigment Epithelium. J Biol Chem Yafeng Li, Delu Song, Ying Song, Liangliang Zhao, Natalie Wolkow, John W Tobias, Wenchao Song, Joshua L Dunaief Site Directed Mutagenesis,High-Fidelity PCR
2015 Islet Endothelial Cells Induce Glycosylation and Increase Cell-surface Expression of Integrin β1 in β Cells Mol Biol Cell Spelios MG., Olsen JA., Kenna LA., Akirav EM.
2015 Kinetic pathway of 40S ribosomal subunit recruitment to hepatitis C virus internal ribosome entry site Proc Natl Acad Sci U S A Gabriele Fuchs, Alexey N Petrov, Caleb D Marceau, Lauren M Popov, Jin Chen, Sen E O'Leary, Richard Wang, Jan E Carette, Peter Sarnow, Joseph D Puglisi SNAP Cell,SNAP Surface
2015 Identification of a Conserved Linear B-Cell Epitope of Streptococcus dysgalactiae GapC Protein by Screening Phage-Displayed Random Peptide Library PLoS One Zhang L., Zhang H., Fan Z., Zhou X., Yu L., Sun H., Wu Z., Yu Y., Song B., Ma J., Tong C., Wang X., Zhu Z., Cui Y.
2015 Insulin-like factor regulates neural induction through an IGF1 receptor-independent mechanism. Mol Biol Cell Haramoto Y., Takahashi S., Oshima T., Onuma Y., Ito Y., Asashima M.
2015 Involvement of the heterodimeric interface region of the nucleotide binding domain-2 (NBD2) in the CFTR quaternary structure and membrane stability Sci Rep Julien M., Chauvet S., Scheckenbach KE., Alfaidy N., Chanson M., Benharouga M.
2015 Functional Characterization of Cucurbitadienol Synthase and Triterpene Glycosyltransferase Involved in Biosynthesis of Mogrosides from Siraitia grosvenorii. Plant Cell Physiol Longhai Dai, Can Liu, Yueming Zhu, Jiangsheng Zhang, Yan Men, Zeng Yan, Yuanxia Sun High-Fidelity PCR
2015 CRL4RBBP7 is required for efficient CENP-A deposition at centromeres J Cell Sci Julien Mouysset, Samuel Gilberto, Michelle G Meier, Fabienne Lampert, Mukta Belwal, Patrick Meraldi, Matthias Peter SNAP Cell
2015 Depletion of CG-Specific Methylation in Mycoplasma hyorhinis Genomic DNA after Host Cell Invasion PLoS One Chernov AV., Reyes L., Peterson S., Strongin AY. Epigenetics,Bisulfite Conversion
2015 Development of a Rapid, Simple Method for Detecting Naegleria fowleri Visually in Water Samples by Loop-Mediated Isothermal Amplification (LAMP). PLoS One Aongart Mahittikorn, Hirotake Mori, Supaluk Popruk, Amonrattana Roobthaisong, Chantira Sutthikornchai, Khuanchai Koompapong, Sukhontha Siri, Yaowalark Sukthana, Duangporn Nacapunchai Isothermal Amplification
2015 Compounds targeting disulfide bond forming enzyme DsbB of Gram-negative bacteria Nature Chemical Biology Landeta, C., Blazyk, J.L., Hatahet, F., Meehan, B.M., Eser, M., Myrick, A., Bronstain, L., Minami, S., Arnold, H., Ke, N., Rubin, E.J., Furie, B.C., Furie, B., Beckwith, J., Dutton, R., Boyd, D.
2015 Considerations and protocols for the synthesis of custom protein labeling probes Metholds Mol Biol Correa, I.R. Jr.
2015 Converting a Sulfenic Acid Reductase into a Disulfide Bond Isomerase Antioxid Redox Signal. Chatelle C, Kraemer S, Ren G, Chmura H, Marechal N, Boyd D, Roggemans C, Ke N, Riggs P, Bardwell J, Berkmen M.
2015 Developmental exposure to 2,3,7,8-tetrachlorodibenzo-p-dioxin alters DNA methyltransferase (dnmt) expression in zebrafish (Danio rerio) Toxicol Appl Pharmacol Aluru N, Kuo E, Helfrich LW, Karchner SI, Linney EA, Pais JE, Franks DG
2015 Efficient expression of full-length antibodies in the cytoplasm of engineered bacteria Nature Communications Robinson, M.-P., Ke, N., Lobstein, J., Peterson, C., Szkodny, A., Mansell, T.J., Tuckey, C., Riggs, P.D., Colussi, P.A., Noren, C.J., Taron, C.H., Delisa, M.P., Berkmen, M.
2015 Enhanced production of secretory glycoprotein VSTM1-v2 with mouse IgGκ signal peptide in optimized HEK293F transient transfection Sci Rep Liu H., Zou X., Li T., Wang X., Yuan W., Chen Y., Han W.
2015 Functional analysis of microRNA activity in Brugia malayi Int J Parasitol Liu, C., Voronin, D., Poole, C.B., Bachu, S., Rogers, M.B., Jin, J., Ghedin, E., Lustigman, S., McReynolds, L.A. and Unnasch, T.R.
2015 Dissecting the molecular properties of prokaryotic flotillins PLoS One Juri Nio Bach, Marc Bramkamp SNAP Cell,SNAP Surface
2015 Dynamic caveolae exclude bulk membrane proteins and are required for sorting of excess glycosphingolipids Nat Commun Elena Shvets, Vassilis Bitsikas, Gillian Howard, Carsten Gram Hansen, Benjamin J Nichols SNAP Surface
2015 Efficient expression of full-length antibodies in the cytoplasm of engineered bacteria Nat Commun. Robinson MP, Ke N, Lobstein J, Peterson C, Szkodny A, Mansell TJ, Tuckey C, Riggs PD, Colussi PA, Noren CJ, Taron CH, DeLisa MP, Berkmen M.
2015 Visual detection of isothermal nucleic acid amplification using pH-sensitive dyes. Biotechniques Tanner NA, Zhang Y, Evans TC Jr
2015 Environmental marine pathogen isolation using mesocosm culture of sharpsnout seabream: striking genomic and morphological features of novel Endozoicomonas sp. Sci Rep. Katharios, P. et al.