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Publications

We believe that basic research and the cultivation of scientific knowledge is critical for us to stay connected with our customers and to drive scientific breakthroughs. At NEB, over 30 labs participate in research projects, which are aided by post-doctoral fellows and students in Masters and Ph.D. programs. NEB researchers have authored or co-authored over 1,000 publications (as of 1/17) many of which are in peer-reviewed journals. Further, NEB products have been used successfully in numerous publications by scientists throughout the world.

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Year Title Journal Authors Application(s)
2015 Evolutionary and biogeographical patterns of barnacles from deep-sea hydrothermal vents. Mol Ecol. Herrera S, Watanabe H, Shank TM.
2015 RAD sequencing and genomic simulations resolve hybrid origins within North American Canis. Bio Lett. Rutledge LY, Devillard S, Boone JQ, Hohenlohe PA, White BN.
2015 Restriction Site-Associated DNA Sequencing (RAD-seq) Reveals an Extraordinary Number of Transitions among Gecko Sex-Determining Systems. Mol Biol Evol. Gamble T, Coryell J, Ezaz T, Lynch J, Scantlebury DP, Zarkower D.
2015 Sequence-tagged high-density genetic maps of Zoysia japonica provide insights into genome evolution in Chloridoideae. Plant J. Wang F, Singh R, Genovesi AD, Wai CM, Huang X, Chandra A, Yu Q.
2015 Leaf margin phenotype-specific restriction-site-associated DNA-derived markers for pineapple (Ananas comosus L.). Breed Sci. Urasaki N, Goeku S, Kaneshima R, Takamine T, Tarora K, Takeuchi M, Moromizato C, Yonamine K, Hosaka F, Terakami S, Matsumura H, Yamamoto T, Shoda M.
2015 Population genomic evidence for adaptive differentiation in Baltic Sea three-spined sticklebacks. BMCBiol. Guo B, DeFaveri J, Sotelo G, Nair A, Merilä J.
2015 Linkage disequilibrium network analysis (LDna) gives a global view of chromosomal inversions, local adaptation and geographic structure. Mol Ecol Resour. Kemppainen P, Knight CG, Sarma DK, Hlaing T, Prakash A, Maung Maung YN, Somboon P, Mahanta J, Walton C.
2015 Comparative Population Genomics of African Montane Forest Mammals Support Population Persistence across a Climatic Gradient and Quaternary Climatic Cycles. PLoS One. Demos TC, Kerbis Peterhans JC, Joseph TA, Robinson JD, Agwanda B, Hickerson MJ.
2015 Production of bioactive chicken (Gallus gallus) follistatin-type proteins in E. coli Sci Rep Lee S.B., Park S.K., Kim Y.S.
2015 Proteomic Analysis Reveals Aberrant O-GlcNAcylation of Extracellular Proteins from Breast Cancer Cell Secretion Mol Biol Cell Netsirisawan P., Chokchaichamnankit D., Srisomsap C., Svasti J., Champattanachai V.
2015 Rapid detection of equine coronavirus by reverse transcription loop-mediated isothermal amplification. J Virol Methods Manabu Nemoto, Yoshinori Morita, Hidekazu Niwa, Hiroshi Bannai, Koji Tsujimura, Takashi Yamanaka, Takashi Kondo Isothermal Amplification
2015 Pre-Steady-State Kinetic Analysis of a Family D DNA Polymerase from Thermococcus sp. 9°N Reveals Mechanisms for Archaeal Genomic Replication and Maintenance J Biol Chem Schermerhorn KM, Gardner AF
2015 Production of a Highly Protease-Resistant Fungal α-Galactosidase in Transgenic Maize Seeds for Simplified Feed Processing Sci Rep Yang W., Zhang Y., Zhou X., Zhang W., Xu X., Chen R., Meng Q., Yuan J., Yang P., Yao B.
2015 Probing the Run-On Oligomer of Activated SgrAI Bound to DNA PLoS One Shah, S., Sanchez, J., Stewart, A., et al. Cloning & Synthetic Biology,DNA Preparation,Restriction Enzyme Digestion,Restriction Enzyme Digestion
2015 REBASE - A database for DNA restriction and modification: enzymes, genes and genomes Nucleic Acids Res Roberts, R.J., Vincze, T., Posfai, J., Macelis, D.
2015 Rapid isolation and single-molecule analysis of ribonucleoproteins from cell lysate by SNAP-SiMPull RNA Margaret L Rodgers, Joshua Paulson, Aaron A Hoskins SNAP Cell,SNAP Surface
2015 Selective expression of sense and antisense transcripts of the sushi-ichi-related retrotransposon - derived family during mouse placentogenesis. Retrovirology Christine Henke, Pamela L Strissel, Maria-Theresa Schubert, Megan Mitchell, Claus C Stolt, Florian Faschingbauer, Matthias W Beckmann, Reiner Strick High-Fidelity PCR
2015 Sequence-specific DNA nicking endonucleases Biomol concepts Xu, S-Y
2015 Rapid Preparation of Released N-Glycans for HILIC Analysis Using a Labeling Reagent that Facilitates Sensitive Fluorescence and ESI-MS Detection Anal Chem Lauber, M.A., Yu, Y.Q., Brousmiche,D.W., Hua, Z., Koza, S.M., Magnelli, P., Guthrie, E., Taron, C.H. and Fountain, K.J.
2015 Rational design of 'controller cells' to manipulate protein and phenotype expression. Metab Eng Amin Zargar, David N Quan, Milad Emamian, Chen Yu Tsao, Hsuan-Chen Wu, Chelsea R Virgile, William E Bentley High-Fidelity PCR
2015 Real-Time Sequence-Validated Loop-Mediated Isothermal Amplification Assays for Detection of Middle East Respiratory Syndrome Coronavirus (MERS-CoV). PLoS One Sanchita Bhadra, Yu Sherry Jiang, Mia R Kumar, Reed F Johnson, Lisa E Hensley, Andrew D Ellington Isothermal Amplification
2015 Pre-steady-state Kinetic Analysis of a Family D DNA Polymerase from Thermococcus sp. 9°N Reveals Mechanisms for Archaeal Genomic Replication and Maintenance J Biol Chem Schermerhorn KM, Gardner AF.
2015 microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach. Parasites & Vectors Macchiaroli, N. et al.
2015 Microscale purification of antigen-specific antibodies Sci Rep Brown EP., Normandin E., Osei-Owusu NY., Mahan AE., Chan YN., Lai JI., Vaccari M., Rao M., Franchini G., Alter G., Ackerman ME.
2015 Multi-Dimensional Measurement of Antibody-Mediated Heterosubtypic Immunity to Influenza. Sci Rep Wang J., Hilchey SP., Hyrien O., Huertas N., Perry S., Ramanunninair M., Bucher D., Zand MS.
2015 Label-free single-cell protein quantification using a drop-based mix-and-read system. Sci. Rep. Abbaspourrad A, Zhang H, Tao Y, Cui N, Asahara H, Zhou Y, Yue D, Koehler SA, Ung LW, Heyman J, Ren Y, Ziblat R, Chong S, Weitz DA.
2015 Mammalian DNA (cytosine-5) methyltransferase mechanisms and RNA-mediated inhibition for future therapies. Epigenetics Diagnostic Therapy Zhang, G., Esteve, P.O., Chin, H.G. and Pradhan, S
2015 Mammalian DNA (cytosine-5) methyltransferase mechanisms and RNA-mediated inhibition for future therapies. Epigenetics Diagnostic Therapy Zhang, G., Esteve, P.O., Chin, H.G. and Pradhan, S
2015 Multivalent site-specific phage modification enhances the binding affinity of receptor ligands Bioconjug Chem Beech, J., Saleh, L., Frentzel, J., Figler, H., Correa, I.R. Jr., Baker, B., Ramspacher, C., Marshall, M., Dasa, S., Linden, J., Noren, C.J. and Kelly, K.A.
2015 Overview of Target Enrichment Strategies. current Protocols in Molecular Biology Kozarewa, I., Armisen, J., Gardner, A.F., Slatko, B.E. and Hendrickson, C.L.
2015 Phylogeny and differentiation of reptilian and amphibian ranaviruses detected in europe PLoS One Stöhr AC, López-Bueno A, Blahak S, Caeiro MF, Rosa GM, Alves de Matos AP, Martel A, Alejo A, Marschang RE
2015 Physiologic Stresses Reveal a Salmonella Persister State and TA Family Toxins Modulate Tolerance to These Stresses PLoS One Silva-Herzog E, McDonald EM, Crooks AL, Detweiler CS.
2015 Na, K-ATPase α3 is a death target of Alzheimer patient amyloid-β assembly. Proc Natl Acad Sci U S A Ohnishi T., Yanazawa M., Sasahara T., Kitamura Y., Hiroaki H., Fukazawa Y., Kii I., Nishiyama T., Kakita A., Takeda H., Takeuchi A., Arai Y., Ito A., Komura H., Hirao H., Satomura K., Inoue M., Muramatsu S., Matsui K., Tada M., Sato M., Saijo E., Shigemitsu Y., Sakai S., Umetsu Y., Goda N., Takino N., Takahashi H., Hagiwara M., Sawasaki T., Iwasaki G., Nakamura Y., Nabeshima Y., Teplow D.B., Hoshi M.
2015 Novel recA-Independent Horizontal Gene Transfer in Escherichia coli K-12 PLoS Kingston AW, Roussel-Rossin C, Dupont C, Raleigh EA.
2015 Novel recA-Independent Horizontal Gene Transfer in Escherichia coli K-12 PloS One Kingston, A. W., Roussel-Rossin, C., Dupont, C., Raleigh, E. A.
2015 Serum N-Glycans: A New Diagnostic Biomarker for Light Chain Multiple Myeloma Sci Rep Chen J., Fang M., Zhao YP., Yi CH., Ji J., Cheng C., Wang MM., Gu X., Sun QS., Chen XL., Gao CF.
2015 Tissue-specific epigenetics in gene neighborhoods: myogenic transcription factor genes Hum Mol Genet Chandra, S., Terragni, J., Zhang, G., Pradhan, S., Haushka, S., Johnston, D., Baribault, C., Lacey, M. and Ehrlich, M.
2015 TonEBP modulates the protective effect of taurine in ischemia-induced cytotoxicity in cardiomyocytes Cell Death Dis. Yang YJ, Han YY, Chen K, Zhang Y, Liu X, Li S, Wang KQ, Ge JB, Liu W, Zuo J.
2015 The foles of family B and d DNA polymerases in thermococcus species 9 degrees n okazaki fragment maturation J Biol Chem Greenough, L., Kelman, Z. and Gardner, A.F.
2015 The ribosome quality control pathway can access nascent polypeptides stalled at the Sec61 translocon Mol Biol Cell Malsburg K., Shao S., Hegde RS.
2015 The RpoE Stress Response Pathway Mediates Reduction of the Virulence of Enteropathogenic Escherichia coli by Zinc. Appl Environ Microbiol Yuan Xue, Jossef Osborn, Anand Panchal, Jay L Mellies High-Fidelity PCR
2015 Transcriptional Analysis of Deinococcus radiodurans Reveals Novel Small RNAs That Are Differentially Expressed under Ionizing Radiation. Appl. Environ. Microbiol. Tsai, H.C. et al
2015 Bias in ligation-based small RNA sequencing library construction is determined by adaptor and RNA structure PLoS One Fuchs, R.T., Sun, Z., Zhuang, F., et al. RNA Analysis
2015 Converting a Sulfenic Acid Reductase into a Disulfide Bond Isomerase Antioxid Redox Signal Chatelle C, Kraemer S, Ren G, Chmura H, Marechal N, Boyd D, Roggemans C, Ke N, Riggs P, Bardwell J, Berkmen M
2015 CRISPR/Cas9 nuclease cleavage combined with Gibson assembly for seamless cloning Biotechniques Wang JW, Wang A, Li K, Wang B, Jin S, Reiser M, Lockey RF
2015 Upregulation of glycans containing 3' fucose in a subset of pancreatic cancers uncovered using fusion-tagged lectins. J Proteome Res Singh S., Kuntal P., Yadav J., Tang H., Partyka K., Kletter D., Hsueh P., Ensink E., Kc B., Hostetter G., Xu E.H., Bern M., Smith D.F., Mehta A.S., Brand R., Melcher K., Haab B.B.
2015 VirB6 and VirB10 from the Brucella type IV secretion system interact via the N-terminal periplasmic domain of VirB6 FEBS Lett Giraldo A.MV., Mary C., Sivanesan D., Baron C.
2015 Visual detection of isothermal nucleic acid amplification using pH-sensitive dyes Biotechniques Tanner, N.A., Zhang, Y. and Evans, T.C., Jr.
2015 The diversity of Bet v 1-specific IgG4 antibodies remains mostly constant during the course of birch pollen immunotherapy J Allergy Clin Immunol Subbarayal B., Schiller D., Möbs C., Pfützner W., Jahn-Schmid B., Gepp B., Breiteneder H., Vieths S., Bohle B.
2015 Stem cells. Asymmetric apportioning of aged mitochondria between daughter cells is required for stemness Science P, Katajisto., Dohla, J., Chaffer, CL., Pentinmikko, N., Marjanovic, N., Igbal, S., Zoncu, R., Chen, W., Weinberg, RA., Sabatini, DM. SNAP Cell