Publications

Publications

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YearTitleJournalAuthorsApplication(s)
2013Role of DNA methylation in expression and transmission of porcine endogenous retroviruses.Journal of Virology.Matousková, M., Vesely, P., Daniel, P., Mattiuzzo, G., Hector, R.D., Scobie, L., Takeuchi, Y. and Hejnar, J.
2013ROLE OF HUMAN HYPOXANTHINE GUANINE PHOSPHORIBOSYLTRANSFERASE IN ACTIVATION OF THE ANTIVIRAL AGENT T-705 (FAVIPIRAVIR)Molecular Pharmacology Fast ForwardLieve Naesens, Luke Guddat, Dianne Keough, André B.P. van Kuilenburg, Judith Meijer, Johan Vande Voorde and Jan Balzarini
2014Role of lipid rafts and GM1 in the segregation and processing of prion proteinPLoS OneBotto L, Cunati D, Coco S, Sesana S, Bulbarelli A, Biasini E, Colombo L, Negro A, Chiesa R, Masserini M, Palestini PGlycobiology
2005Saccharomyces cerevisiae Ybr004c and its human homologue are required for addition of the second mannose during glycosylphosphatidylinositol precursor assembly.FEBS Journal Fabre, A-L, Orlean, P.and Taron, C.H.
1984Screening for and characterizing restriction endonucleasesGenetic EngineeringSchildkraut, I.
Screening of genetic parameters for soluble protein expression in Escherichia coliProtein Expression and PurificationVernet, E., Kotzsch, A., Voldborg, B., et al.
2011Screening of specific binding peptide targeting blood vessel of human esophageal cancer in vivo in miceChin. Med. J. Zhi, M. et al.
2010Secretory production of recombinant proteins in Escherichia coliRecent Patents on BiotechnologyYoon, S.H., Kim, S.K., and Kim J.F.
2004Segmentally Variable Genes: A new perspective on adaptation.PLoS BiologyZheng, Y., Roberts, R.J., and Kasif, S.
2013Segregation of Family A G Protein Coupled Receptor Protomers in the Plasma MembraneMolecular PharmacologyAnthony Gavalas, Tien-Hung Lan, Qiuju Liu, Ivan R. Corrêa, Jr., Jonathan A. Javitch, and Nevin A. Lambert
2007Selecting targeting of adenoviral vectors to neural precursor cells in the hippocampus of adult mice: new prospects for in situ gene therapyStem CellsSchmidt, A. et al.
2002Selection for mutants improving expression of an anti-MAP kinase monoclonal antibody by filamentous phage display.J.Immunol.Methods Tuckey, C.D.and Noren, C.J.
Selection of a mimotope peptide of S-adenosyl-l-homocysteine and its application in immunoassaysMoleculesWu, C. and Tzertzinis, G.Phage Display
2013Selection of a Mimotope Peptide of S-adenosyl-l-homocysteine and Its Application in ImmunoassaysMoleculesWu C. and Tzertzinis G. 
2007Selection of restriction endonucleases using artificial cells.Nucl.Acids.Res.Zheng, Y.and Roberts, R.
2009Selective cross-linking of interacting proteins using self-labeling tagsJ. Am. Chem. Soc. Gautier A. et al.
2015Selective expression of sense and antisense transcripts of the sushi-ichi-related retrotransposon - derived family during mouse placentogenesis.RetrovirologyChristine Henke, Pamela L Strissel, Maria-Theresa Schubert, Megan Mitchell, Claus C Stolt, Florian Faschingbauer, Matthias W Beckmann, Reiner StrickHigh-Fidelity PCR
2005Self-cleavable stimulus responsive tags for protein purification without chromatographyJ. Am. Chem. SocGe, X., et. al.
2002Self-generated DNA termini relax the specificity of SgrAI restriction endonuclease.Proc.Natl.Acad.Sci.USA Bitinaite, J.and Schildkraut, I.
2003Semisynthesis and application of carboxyfluorescein-labelled biologically active human interleukin-8Biol. Chem.David, R., et al.
2006Semisynthesis and characterization of mammalian thioredoxin reductaseBiochem.Eckenroth, B., et al.
2004Semisynthesis of a segmental isotopically labeled protein splicing precursor: NMR evidence for an unusual peptide bond at the N-extein-intein junctionProc. Natl. Acad. Sci. USARomanelli, A., et al.
1998Semisynthesis of cytotoxic proteins using a modified protein splicing element.Protein Sci.Evans, T.C., Benner, J.and Xu, M-Q
2009Semisynthetic fluorescent sensor proteins based on self-labeling protein tagsJ. Am. Chem. Soc. Brun M.A. et al.
2016Sensitive and specific miRNA detection method using SplintR LigasePublication.Nucleic Acids Res.Jin, J., Vaud, S., Zhelkovsky, A.M., Posfai, J. and McReynolds, L.A.
2012Sensitive detection of chromatin coassociations using enhanced chromosome conformation capture on chipNat ProtocSexton T, Kurukuti S, Mitchell JA, Umlauf D, Nagano T, Fraser PEpigenetics, Restriction Enzymes for Epigenetics, DNA Methylation Analysis
2016Sensitive Detection of Plasmodium vivax Using a High-Throughput, Colourimetric Loop Mediated Isothermal Amplification (HtLAMP) Platform: A Potential Novel Tool for Malaria Elimination.PLoS Negl Trop DisBritton, S., Cheng, Q., Grigg, M.J., Poole, C.B., Pasay, C., William, T., Fornace, K., Anstey, N.M., Sutherland, C.J., Drakeley, C. and McCarthy, J.S.
2009Sensitive in vivo imaging of T cells using membrane-bound gaussia princeps luciferaseNat. Med.Santos, E., Yes, R., Lee, J., et al
2009Sensitive in vivo imaging of T cells using membrane-bound gaussia princeps luciferaseNat. Med. Santos, E., Yeh, R., Lee, J., et al.
2008Septin stability and recycling during dynamic structural transitions in cell division and developmentCurrent Biology McMurray, M.A. and Thorner, J.
1998Sequence Comparison of the EcoHK31I and EaeI Restriction-Modification Systems Suggests an Intergenic Transfer of Genetic Material.Biol.Chem.Lee, K-F, Shaw, P-C, Picone, S.J., Wilson, G.G.and Lunnen, K.D.
2005Sequence Specificity and Role of Proximal Amino Acids of the Histone H3 Tail on Catalysis of Murine G9a Lysine 9 Histone H3 Methyltransferase.BiochemistryChin, H.G., Pradhan, M., Esteve, P., Patnaik, D., Evans, T.C.Jr.and Pradhan, S.
2010Sequence-specific cleavage of RNA by Type II restriction enzymes.Nucl.Acids.Res.Murray, I.A., Stickel, S.K.and Roberts, R.J.
2015Sequence-tagged high-density genetic maps of Zoysia japonica provide insights into genome evolution in Chloridoideae.Plant J.Wang F, Singh R, Genovesi AD, Wai CM, Huang X, Chandra A, Yu Q.
2002Sequencing and analysis of a 63 kb bacterial artificial chromosome insert from the Wolbachia endosymbiont of the human filarial parasite Brugia malayi.Int.J.Parasitol.Ware, J., Moran, L., Foster, J., Posfai, J., Vincze, T., Guiliano, D., Blaxter, M., Eisen, J.and Slatko, B.
1986Sequencing in the Fast Lane: A Rapid Protocol for [a-35S] dATP Dideoxy DNA Sequencing.BioTechniquesWilliams, S.A., Slatko, B.E., Moran, L.S., and DeSimone, S.M.
2014Sequencing of captive target transcripts identifies the network of regulated genes and functions of primate-specific miR-522Cell RepTan SM, Kirchner R, Jin J, Hofmann O, McReynolds L, Hide W, Lieberman J
2014Serine and proline-rich ligands enriched via phage-display technology show preferential binding to BCR/ABL expressing cellsHematol Oncol Stem Cell TherShires K, Shankland I, Mowla S, Njikan S, Jaymacker J, Novitzky NPhage Display
2015Serum N-Glycans: A New Diagnostic Biomarker for Light Chain Multiple MyelomaPLoS OneChen J., Fang M., Zhao YP., Yi CH., Ji J., Cheng C., Wang MM., Gu X., Sun QS., Chen XL., Gao CF.
2009SET7/9 mediated methylation of non-histone proteins in mammalian cells.EpigeneticsPradhan, S., Chin, H.G., Esteve, P.O.and Jacobsen, S.E.
2007Shining a light on protein expression in living organisms.Nat Chem Biol Perler, F.
2008Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning.NatureCokus, S.J., Feng, S., Zhang, X., Chen, Z., Merriman, B., Haudenschild, C.D., Pradhan, S., Nelson, S.F., Pellegrini, M.and Jacobsen, S.E.
2012SHuffle, a novel Escherichia coli protein expression strain capable of correctly folding disulfide bonded proteins in its cytoplasmMicrobial Cell FactoriesLobstein, J., Emrich, C.A., Jeans, C., et al.
2012SHuffle, a novel Escherichia coli protein expression strain capable of correctly folding disulfide bonded proteins in its cytoplasmLobstein, J., Emrich, C.A., Jeans, C., Faulkner, M., Riggs, P. and Berkmen, M.
2007Sialic acid on herpes simplex virus type 1 envelope glycoproteins is required for efficient infection of cells J. Virol. Teuton, J.R., Brandt, C.R.
2008Sialylation of beta1 integrins blocks cell adhesion to galectin-3 and protects cells against galectin-3-induced apoptosisJ. Biol. Chem. Zhuo, Y., Chammas, R., Bellis, S.L.
2011Simple and efficient synthesis of 5′ pre-adenylated DNA using thermostable RNA ligase.Nucl.Acids Res.Zhelkovsky, A.M.and McReynolds, L.A.
2016Simple and Highly Sensitive Molecular Diagnosis of Zika Virus by Lateral Flow Assays.Anal Chem.Lee D, Shin Y, Chung S, Hwang KS, Yoon DS, Lee JH
2016Simple Isothermal Strategy for Multiplexed, Rapid, Sensitive, and Accurate miRNA DetectionACS SensWee E J H, Trau M,
2006Simultaneous amplification and screening of whole plasmids using the T7 bacteriophage replisome.Nucl.Acids.Res.Xu, Y., Kim, H-J., Kays, A., Rice, J.and Kong, H.
2015Simultaneous generation of many RNA-seq libraries in a single reactionNat MethodsShishkin AA, Giannoukos G, Kucukural A, Ciulla D, Busby M, Surka C, Chen J, Bhattacharyya RP, Rudy RF, Patel MM, Novod N, Hung DT, Gnirke A, Garber M, Guttman M, Livny J
2012Simultaneous multiple target detection in real-time loop-mediated isothermal amplificationBiotechniquesTanner, N.A., Zhang, Y. and Evans, T.C. Jr.
2012Simultaneous multiple target detection in real-time loop-mediated isothermal amplificationBiotechniquesTanner NA, Zhang Y, Evans TC Jr.
2008Simultaneous protein tagging in two colorsChemistry & Biology Schulz C. and Köhn M.
2007Single M13 bacteriophage tethering and stretching.Proc.Natl.Acad.Sci.USAKhalil, A.S., Ferrer, J.M., Brau, r.R., Kottmann, S.T., Noren, C.J., Lang, M.J.and Belcher, A.M.
2008Single molecule imaging of full protein synthesis by immobilized ribosomesNuc. Acid. Res.  Uemura, S., Iizuka, R., Ueno, T., Shimizu, Y., Taguchi, H., Ueda, T., Puglisi. J., and Funatsu, T.
2016Single-cell 5hmC sequencing reveals chromosome-wide cell-to-cell variability and enables lineage reconstructionNature BiotechnologyMooijman D, Dey S S, Boisset JC, Crosetto N, van Oudenaarden AEpigenetics
2005Single-cell FRET imaging of transferrin receptor trafficking dynamics by Sfp-catalyzed, site-specific protein labelingChem. Biol Yin J. et al.
1997Single-column purification of free recombinant proteins using a self-cleavable affinity tag derived from a protein splicing element.GeneChong, S., Mersha, F.B., Comb, D.G., Scott, M.E., Landry, D., Vence, L.M., Perler, F.B., Benner, J., Kucera, R.B., Hirvonen, C.A., Pelletier, J.J., Paulus, H., and Xu, M.Q.
2008Single-process expression and purification of multiple recombinant protein through cocultivation and affinity purification.Anal.Biochem.Porte, M.and Chong, S.
2013Single-stranded DNA library preparation for the sequencing of ancient or damaged DNANat. Protoc.Gansauge MT, Meyer M.
2009Site specific conjugation of fluoroprobes to the remodeled Fc N-glycans of monoclonal antibodies using mutant glycosyltransferases: application for cell surface antigen detection Bioconjug. Chem. Boeggeman, E., Ramakrishnan, B., Pasek, M., Manzoni, M., Puri, A., Loomis, K.H., Waybright, T.J., Qasba, P.K. Glycobiology
1998Site-directed Mutagenesis of Essential Residues Involved in the Mechanism of Bacterial Glycosylasparaginase.J.Biol.Chem.Liu, Y., Guan, C.and Aronson, N.N., Jr.
2004Site-specific conjugation of oligonucleotides to the C-terminus of recombinant protein by expressed protein ligationBioorg. Med. Chem. Lett.Takeda, S.,et al.
2009Site-specific covalent labeling of proteins inside live cells using small molecule probesBioorg. Med. Chem.Chattopadhaya, S., et al.
2005Site-specific DNA-nicking mutants of the heterodimeric restriction endonuclease R.BbvCI.J.Mol.Biol.Heiter, D.F., Lunnen, K.D.and Wilson, G.G.
2005Site-specific immobilization of proteins in a microarray using intein-mediated protein splicingBioorg. Med. Chem. Lett.Girish, A., et al.
2011Site-specific protein labeling by intein-mediated protein ligation.Methods Mol.Biol.Ghosh, I., Considine, N., Maunus, E., Sun, L., Zhang, A., Buswell, J., Evans, T.C.Jr.and Xu, M.Q.
2009Site-Specific, covalent labeling of recombinant antibody fragments via fusion to an engineered version of 6-O-alkylguanine DNA alkyltransferaseBioconjug Chem. Kapmeier F. et al.
2015Small RNA-mediated DNA (cytosine-5) methyltransferase 1 inhibition leads to aberrant DNA methylationNucleic Acids ResZhang, G., Esteve, P.O., Chin, H.G., Terragni, J., Dai, N., Correa, I.R. Jr. and Pradhan, S.
2006SmpB triggers GTP hydrolysis of elongation factor Tu on ribosome by compensating for the lack of codon-anticodon interaction during trans-translation initiationJ. Biol. Chem.Shimizu, Y. and Ueda, T.
2005SNAP-tag mediated live cell labeling as an alternative to GFP in anaerobic organismsBioTechniques Regoes A. et al.
2008SNAP-tag Technologies: Novel tools to study protein functionNEB Expressions Johnson K.
2015SNP-based genetic linkage map of tobacco (Nicotiana tabacum L.) using next-generation RAD sequencing.J Biol Res (Thessalon). Xiao B, Tan Y, Long N, Chen X, Tong Z, Dong Y, Li Y.
2004Soluble expression and affinity purification of functional domain of human acetylcholine receptor alpha-subunit by the modulation of maltose binding protein.Biotechnol Lett.Li, Z.Y., Li, Y.J., Guo, C.Y., Shi, Y.W., Xu, M-Q., Trommer, W.E.and Yuan, J.M.
2009Soluble expression and one-step purification of a neurotoxin Huwentoxin-I in Escherichia coliProtein Expr Purif.Che, N., et. al.
2007Solution Structure of a KlbA Intein Precursor from Methanococcus jannaschii.Protein Sci.Johnson, M., Southworth, M., Herrmann, T., Brace, L., Perler, F.and Wuthrich, K.
1988Species-specific oligonucleotide probes for the identification of human filarial parasites.Mol.Biochem.Parasitol.Williams, S.A., DeSimone, S.M., and McReynolds, L.A.
2004Specific and covalent targeting of conjugating and deconjugating enzymes of ubiquitin-like proteinsMol. Cell Biol.Hemelaar, J.et al.
2004Specific labeling of cell surface proteins with chemically diverse compoundsJ .Am. Chem. Soc.  George N. et al.
2015Specificity of the ModAll, ModA12 and ModD1 epigenetic regulator N6-adenine DNA methyltransferases of Neisseria MeningitidisNucleic Acids ResSeib, K.L., Jen, F.E., Tan, A., Scott, A.L., Kumar, R., Power, P.M., Chen, L.T., Wu, H.J., Wang, A.H., Hill, D.M., Luyten, Y.A., Morgan, R.D., Roberts, R.J., Maiden, M.C., Boitano, M., Clark, T.A., Korlach, J., Rao, D.N. and Jennings, M.P.
2008Spectral resolved gene technology for multiplexed bioluminescence and high content screening Anal. Chem. Michelini, E., Cevenini, L., Mezzanote, L., Ablamsky, D., Southworth, T., Branchini, B. and Roda, A.
2014SpeedyGenes: an improved gene synthesis method for the efficient production of error-corrected, synthetic protein libraries for directed evolutionProtein Eng Des SelCurrin A, Swainston N, Day PJ, Kell DB
2010Splicing of the Mycobacteriophage Bethlehem DnaB intein: identification of a new mechanistic class of inteins that contain an obligate block F nucleophile.Journal of Biological ChemistryTori, K., Dassa, B., Johnson, M.A., Southworth, M.W., Brace, L.E., Ishino, Y., Pietrokovski, S., and Perler, F.B.
2014Spontaneous in vitro senescence of glioma cells confirmed by an antibody against IDH1R132HAnticancer ResStoczynska-Fidelus E, Och W, Rieske P, Bienkowski M, Banaszczyk M, Winiecka-Klimek M, Zieba J, Janik K, Rosiak K, Treda C, Stawski R, Radomiak-Zaluska A, Piaskowski S
2004SPR-based interaction studies with small molecular weight ligands using hAGT fusion proteinsAnal. Biochem. Huber W. et al.
2014Stable cell surface expression of GPI-anchored proteins, but not intracellular transport, depends on their fatty acid structureTrafficJanesh, N. Correa, I.R., Jr. and Watanabe, R.
2015Stem cells. Asymmetric apportioning of aged mitochondria between daughter cells is required for stemnessScienceP, Katajisto., Dohla, J., Chaffer, CL., Pentinmikko, N., Marjanovic, N., Igbal, S., Zoncu, R., Chen, W., Weinberg, RA., Sabatini, DM.SNAP Cell
2010Stimulated emission depletion nanoscopy of living cells using SNAP-Tag fusion proteinsBiophys. J.  Hein B. et al.
2014Strand Invasion Based Amplification (SIBA®): A Novel Isothermal DNA Amplification Technology Demonstrating High Specificity and Sensitivity for a Single Molecule of Target AnalytePLoS OneHoser MJ, Mansukoski HK, Morrical SW, Eboigbodin KE
2009Strategies for successful recombinant expression of disulfide bond-dependent proteins in Escherichia coliMicrobial Cell Factoriesde Marco, A.
2015Structural and biochemical studies of a moderately thermophilic exonuclease I from Methylocaldum szegediensePLoS OneFei, L., Tian, S., Moysey, R., Misca, M., Barker, J.J., Smith, M.A., McEwan, P.A., Pilka, E.S., Crawley, L., Evans, T. and Sun, D.
Structural basis for human PRDM9 action at recombination hot spots.Genes Dev.Patel, A., Horton, J.R., Wilson, G.G., Zhang, X. and Cheng, X.
2014Structural basis for Klf4 recognition of methylated DNANucleic Acids ResearchYiwei Liu, Yusuf Olatunde Olanrewaju, Yu Zheng, Hideharu Hashimoto, Robert M. Blumenthal, Xing Zhang, Xiaodong Cheng
2015Structural basis of asymmetric DNA methylation and ATP-triggered long-range diffusion by EcoP15INature CommunicationsGupta, Y.K., Chan, S.H., Xu, S.Y., and Aggarwal, A.K.
2012Structural bias in T4 RNA ligase-mediated 3'-adapter ligationNucleic Acids Res.Zhuang, F., Fuchs, R.T., Sun, Z., Zheng, Y. and Robb, G.B.
2004Structural characterization and comparative phylogenetic analysis of E.coli HemK, a protein (N5)-glutamine methyltransferase.Mol.Microbiol.Yang, Z., Shipman, L., Zhang, M., Anton, B., Roberts, R.J.and Cheng, X.
2012Structural insights into the assembly and shape of Type III restriction-modification (R-M) EcoP15I complex by small-angle X-ray scattering J Mol biol. Gupta, Y.K., Yang, L., Chan, S.H., Samuelson, J.C., Xu, S.-Y. and Aggarwal, A.K.
1999Structural Insights into the Mechanism of Intramolecular Proteolysis.CellXu, M.Q., Buckley, D., Guan, C.and Guo, H-C
2000Structural Insights into the Protein Splicing Mechanism of PI-SceI.J.Biol.Chem.Poland, B.W., Xu, M.Q.and Quiocho, F.L.