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    2013The COMBREX project design methodology and initial resultsPLOS ONE Anton BP, Chang YC, Brown P, Choi HP, Faller LL, Guleria J, Hu Z, Klitgord N, Levy-Moonshine A, Maksad A, Mazumdar V, McGettrick M, Osmani L,Pokrzywa R, Rachlin J, Swaminathan R, Allen B, Housman G, Monahan C, Rochussen K, Tao K, Bhagwat AS, Brenner SE, Columbus L, de Crécy-Lagard V, Ferguson D, Fomenkov A, Gadda G, Morgan RD, Osterman AL, Rodionov DA, Rodionova IA, Rudd KE, Söll D, Spain J, Xu SY, Bateman A,Blumenthal RM, Bollinger JM, Chang WS, Ferrer M, Friedberg I, Galperin MY, Gobeill J, Haft D, Hunt J, Karp P, Klimke W, Krebs C, Macelis D, Madupu R, Martin MJ, Miller JH, O'Donovan C, Palsson B, Ruch P, Setterdahl A, Sutton G, Tate J, Yakunin A, Tchigvintsev D, Plata G, Hu J, Greiner R, Horn D,Sjölander K, Salzberg SL, Vitkup D, Letovsky S, Segrè D, DeLisi C, Roberts RJ, Steffen M, Kasif S.
    2013DNMT1-interacting RNAs block gene-specific DNA methylationNatureAnnalisa Di Ruscio, Alexander K. Ebralidze, Touati Benoukraf, Giovanni Amabile, Loyal A. Goff, Jolyon Terragni, Maria Eugenia Figueroa, Lorena Lobo De Figueiredo Pontes, Meritxell Alberich-Jorda, Konstantin K. Ebralidze, Sriharsa Pradhan, John L. Rinn, Daniel G. Tenen
    2013Efficient and specific gene knockdown by small interfering RNAs produced in bacteriaNat Biotechnol.Huang, L., Jin, J., Deighan, P., Liner, E., McReynolds, L. and Lieberman, J.
    2013A Method for Selectively Enriching Microbial DNA from Contaminating Vertebrate Host DNAPLOS ONEGeorge R. Feehery, Erbay Yigit, Samuel O. Oyola, Bradley W. LanghorstVictor T. Schmidt, Fiona J. Stewart, Eileen T. Dimalanta, Linda A. Amaral-Zettler, Theodore Davis, Michael A. Quail, Sriharsa Pradhan
    2013High-resolution enzymatic mapping of genomic 5-hydroxymethylcytosine in mouse embryonic stem cellsCell RepSun Z, Terragni J, Borgaro JG, Liu Y, Yu L, Guan S, Wang H, Sun D, Cheng X, Zhu Z, Pradhan S, Zheng Y
    2013Highlights of the DNA cutters: a short history of the restriction enzymesNucleic Acids ResearchWil A. M. Loenen, David T. F. Dryden, Elisabeth A. Raleigh, Geoffrey G. Wilson, and Noreen E. Murray
    2012RNAi triggered by specialized machinery silences developmental genes and retrotransposonsNatureYamanaka, S., Mehta, S., Reyes-Turcu, F.E., Zhuang, F., Fuchs, R.T., Rong, Y., Robb, G.B. and Grewal, S.I.
    2012Stucture and cleavage activity of the tetrameric MspJI DNA modification-dependent restriction endonuclease.Nucleic Acids ResearchHorton, J.R., Mabuchi, M., Cohen-Karni, D., Zhang, X., Griggs, R., Samaranayake, M., Roberts, R.J., Zheng, Y. and Cheng, X.
    2012Identification of genes containing ecdysone response elements in the genome of Brugia malayiMol Biochem ParasitolLiu, C., Enright, T., Tzertzinis, G. and Unnasch, T.R.
    2011Natural and engineered nicking endonucleases--from cleavage mechanism to engineering of strand-specificity.Nucl.Acids.Res.Chan, S.H., Stoddard, B.L.and Xu, S.Y.