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    YearTitleJournalAuthorsApplication(s)
    2014Structure and mutagenesis of the DNA modification-dependent restriction endonuclease AspBHISci RepHorton JR, Nugent RL, Li A, Mabuchi MY, Fomenkov A, Cohen-Karni D, Griggs RM, Zhang X, Wilson GG, Zheng Y, Xu SY, Cheng X
    2014Structure of 5-hydroxymethylcytosine-specific restriction enzyme AbaSI in complex with DNANucleic Acids ResHorton JR, Borgaro JG, Griggs RM, Quimby A, Guan S, Zhang X, Wilson GG, Zheng Y, Zhu Z, Cheng X
    2014Structure of a Naegleria Tet-like dioxygenase in complex with 5-methylcytosine DNANatureHashimoto H, Pais JE, Zhang X, Saleh L, Fu ZQ, Dai N, Corrêa IR Jr, Zheng Y, Cheng X
    2002Structure of a tRNA Repair Enzyme and Molecular Biology Workhorse: T4 Polynucleotide Kinase.StructureGalburt, E.A., Pelletier, J., Wilson, G.and Stoddard, B.L.
    1995Structure of BamHI endonuclease bound to DNA: partial folding and unfolding on DNA binding.ScienceNewman, M., Strzelecka, T., Dorner, L.F., Schildkraut, I., and Aggarwal, A.K.
    1998Structure of FokI has Implications for DNA Cleavage.Proc.Natl.Acad.Sci.USA Wah, D.A., Bitinaite, J., Schildkraut, I., Aggarwal, A.K.
    2005Structure of HinP1I endonuclease reveals a striking similarity to the monomeric restriction enzyme MspI.Nucl.Acids.Res.Yang, Z., Horton, J.R., Maunus, R., Wilson, G.G., Roberts, R.R.and Cheng, X.
    1994Structure of PvuII endonuclease with cognate DNA.EMBO J.Cheng, X., Balendiran, K., Schildkraut, I., and Anderson, J.E.
    2003Structure of Rab GDP-dissociation inhibitor in complex with prenylated YPT1 GTPaseScienceRak, A., et al.
    1994Structure of restriction endonuclease BamHI and its relationship to EcoRI.NatureNewman, M., Strzelecka, T., Dorner, L.F., Schildkraut, I., and Aggarwal, A.K.
    1994Structure of restriction endonuclease BamHI phased at 1.95 A resolution by MAD analysis.StructureNewman, M., Strzelecka, T., Dorner, L.F., Schildkraut, I., and Aggarwal, A.K.
    2003Structure of the large FK506-binding protein FKBP51, an Hsp90-binding protein and a component of steroid receptor complexesProc. Natl. Acad. Sci. USASinars, C.R., et al.
    1997Structure of the Multimodular Endonuclease FokI Bound to DNA.NatureWah, D.A., Hirsch, J.A., Dorner, L.F., Schildkraut, I., Aggarwal, A.K.
    2004Structure of the Q237W mutant of HhaI DNA methyltransferase: An insight into protein-protein interactions.Biol.Chem.Dong, A., Zhou, L., Zhang, X., Stickel, S., Roberts, R.J.and Cheng, X.
    2014Structure of the Trehalose-6-phosphate Phosphatase from Brugia malayi Reveals Key Design Principles for Anthelmintic DrugsPLoS PathogFarelli JD, Galvin BD, Li Z, Liu C, Aono M, Garland M, Hallett OE, Causey TB, Ali-Reynolds A, Saltzberg DJ, Carlow CK, Dunaway-Mariano D, Allen KN
    2012Structure-function analysis of Methanobacterium thermoautotrophicum RNA ligase - engineering a thermostable ATP independent enzymeBMC Mol Biol.Zhelkovsky, A.M. and McReynolds, L.A.
    1999Structures of a Binary Complex of HhaI Methyltransferase with S-adenosyl-L-methionine Formed in the Presence of a Short Non-specific DNA Oligonucleotide.J.Mol.Biol.O'Gara, M., Zhang, X., Roberts, R.J.and Cheng, X.
    1998Structures of HhaI methyltransferase complexed with substrates containing mismatches at the target base.Nature Struct.Biol.O'Gara, M., Horton, J.R., Roberts, R.J.and Cheng, X.
    2008Structures of the rare-cutting restriction endonuclease NotI reveal a unique metal binding fold involved in DNA binding.StructureLambert, A.R., Sussman, D., Shen, b., Maunus, R., Nix, J., Samuelson, J., Xu, S.Y.and Stoddard, B.L.
    2012Stucture and cleavage activity of the tetrameric MspJI DNA modification-dependent restriction endonuclease.Nucleic Acids ResearchHorton, J.R., Mabuchi, M., Cohen-Karni, D., Zhang, X., Griggs, R., Samaranayake, M., Roberts, R.J., Zheng, Y. and Cheng, X.
    2003Study of protein splicing and intein-mediated peptide bond cleavage under high-cell-density conditions.Biotechnol.Prog.Sharma, S., Zhang, A., Wang, H., Harcum, S.W.and Chong S.
    2012Substrate cooperativity in marine luciferases PLoS OneTzertzinis, G., Schildkraut, E. and Schildkraut, I.
    2012Substrate cooperativity in marine luciferasesPLoS OneTzertzinis, G., Schildkraut, E., and Schildkraut, I.
    1997Substrate DNA and cofactor regulate the activities of a multi-functional restriction-modification enzyme, Bcgl.Nucl.Acids Res.Kong, H., and Smith, C.L.
    2004Substrate specificity and kinetic mechanism of mammalian G9a histone H3 methyltransferase.J.Biol.Chem.Patnaik, D., chin, H.G., esteve, P.O., Benner, J., Jacobsen, S.E.and Pradhan, S.
    2013Substrates for Improved Live-Cell Fluorescence Labeling of SNAP-tagCurrent Pharmaceutical DesignIvan R. Corrêa Jr, Brenda Baker, Aihua Zhang, Luo Sun, Christopher R. Provost, Grazvydas Lukinavicius, Luc Reymond, Kai Johnsson, and Ming-Qun Xu
    2007Subtilisin-like proteases in nematodes.Mol.Biochem.Parasitol.Poole, C.B., Jin, J.and McReynolds, L.A.
    2008Subunit-specific surface mobility of differentially labeled AMPA receptor subunitsEur. J. Cell Biol. Kropf M. et al.
    2004Synthesis and characterization of bifunctional probes for the specific labeling of fusion proteinsBioorg. Med. Chem. Lett. Kindermann M. et al.
    2006Synthesis and evaluation of the bioluminescent activity of (S)-Cypridina luciferin and its analogsTetrahedron LettersWu, C., Kawasaki, K., Ohgiya, S., Ohmiya, Y.
    2004Synthesis of fluorescently labeled mono- and diprenylated Rab7 GTPaseJ. Am. Chem. Soc.Durek, T., et al.
    2007Synthesis of Polyester by Means of Genetic Code ReprogrammingChem. Biol. Ohta, A., Murakami, H., Higashimura, E., and Suga, H.
    2007Synthetic analogues of glycosylphosphatidylinositol-anchored proteins and their behavior in supported lipid bilayersJ. Am. Chem. Soc. Paulick, M. G., et al.
    2011T4 RNA ligase 2 truncated active site mutants: improved tools for RNA analysis.BMC Biotechnol.Viollet, S., Fuchs, R.T., Munafo, D.B., Zhuang, F.and Robb, G.B.
    2009Tag-probe labeling methods for live-cell imaging of membrane proteins Biochim. Biophys. Acta. Uano Y. and Matsuzaki K.
    2013Targeted delivery of proapoptotic peptides to tumor-associated macrophages improves survivalProc. Natl. Acad. Sci. Cieslewicz, M. et alPhage Display
    2013Targeted drug delivery systems mediated by a novel peptide in breast cancer therapy and imagingPLoS OneLu, R.-M. et alPhage Display
    2012Targeted genome enrichment for efficient purification of endosymbiont DNA from host DNASymbiosisGeniez, S., Foster, J.M., Kumar, S., Moumen, B., Leproust, E., Hardy, O., Guadalupe, M., Thomas, S.J., Boone, B., Hendrickson, C., Bouchon, D., Greve, P and Slatko, B.E.
    2008Targeted nanoparticles for imaging incipient pancreatic ductal adenocarcinomaPLoS Med.Kelly, K.A. et al.
    2010Targeted photoswitchable probe for nanoscopy of biological structures ChemBioChem Dellagiacoma, C. et al.
    2011Targeting choroid plexus epithelia and ventricular ependyma for drug delivery to the central nervous systemBMC NeurosciGonzalez, A.M. et al.Phage Display
    2008Targeting DNA (5)mCpG sites with chimeric endonucleases.Anal.Biochem.Formenkov, A., Too, P.H., Chan, S.H., Vaisvila, R., Cantin, B.A., Mazzola, L., Tam, V.and Xu, S.Y.
    2010Targeting of embryonic stem cells by peptide-conjugated quantum dotsPLoS OneLu, S. et al.
    2009Targeting of tumor blood vessels: a phage-displayed tumor-homing peptide specifically binds to matrix metalloproteinase-2-processed collagen IV and blocks angiogenesis in vivoMol. Cancer Res.Mueller, J. et al.
    2011Targeting the Wolbachia Cell Division Protein FtsZ as a New Approach for Antifilarial Therapy.PLoS Neglected Tropical DiseasesLi, Z., Garner, A.L., Gloeckner, C., Janda, K.D.and Carlow, C.K.
    2007Tasting Phenylthiocarbamide (PTC): A New Lab With an Old Flavor.Am.Biol.Teacher Merritt, R., Bierwort, L., Slatko, B., Weiner, M., Weiner, E., Ingram, J.and Sciarra, K.
    2008Tasting Phenylthiocarbamide (PTC): A New Lab With an Old Flavor.Am.Biol.TeacherMerritt, R., Bierwort, L., Slatko, B., Weiner, M., Weiner, E., Ingram, J.and Sciarra, K.
    1996Teaching About ScienceAccountability in ResearchRoberts, R.J.
    2008Templated protein assembly on micro-contact-printed surface patterns. Use of the SNAP-tag protein functionality LangumuirIversen L. et al.
    2008Template-Independent DNA Polymerases.Curr.Protoc.Mol.Biol.Yue, D., Tabor, S.and Nichols, N.M.
    2013The advantages of SMRT™ sequencing.  Genome Biology Roberts, R.J., Carneiro, M.O., Schatz, M.C.
    2014The ambrosia symbiosis is specific in some species and promiscuous in others: evidence from community pyrosequencing.ISME JMartin Kostovcik, Craig C Bateman, Miroslav Kolarik, Lukasz L Stelinski, Bjarte H Jordal, Jiri HulcrHigh-Fidelity PCR
    1988The Amino Acid Sequence of the Eukaryotic DNA [N6-adenine] Methyltransferase, M-CviBIII, Has Regions of Similarity With the Prokaryotic Isoschizomer M-TaqI and Other DNA [N6-adenine] Methyltransferases.GeneNarva, K.E., Van Etten, J.L., Slatko, B.E.and Benner, J.S.
    2009The apearance of pyrrolysine in tRNAHis guanylyltransferase by neutral evolution.Proc.Natl.Acad.Sci.USAHeinemann, I.U., O'donoghue, P., Madinger, C., Benner, J., Randau, L., Noren, C.J.and Soll, D.
    2011The Arthrobacter Species FB24 Arth_1007 (DnaB) Intein Is a Pseudogene.PLoS ONETori, K.and Perler, F.B.
    2004The bacterial catalase from filarial DNA preparations derives from common pseudomonad contaminants and not from Wolbachia endosymbionts.Parasitol.Res.Foster, J., Baldo, L., Blaxter, M., Hendle-Duhrsen, K., Whitton, C., Slatko, B.and Bandi, C
    2008The BsaHI restriction-modification system: Cloning, sequencing and characterisation of DNA recognising motifs.BMC Molecular Biology Neely, R.K.and Roberts, R.J.
    2008The Caenorhabditis elegans NR4A nuclear receptor is required for spermatheca morphogenesis.Dev.Biol.Gissendanner, C.R., Kelley, K., Nguyen, T.Q., Hoener, M.C., Sluder, A.E.and Maina, C.V.
    1988The characterization and cloning of the EagI restriction-modification system.Gene Sznyter, L.A., and Brooks, J.E.
    2011The characterization of human adenylate kinases 7 and 8 demonstrates differences in kinetic parameters and structural organization among the family of adenylate kinase isoenzymes Biochem J.  Panayiotou, C., Solaroli, N., Xu, Y., Johansson, M. and Karlsson, A.
    2005The chitin synthase genes chs-1 and chs-2 are essential for C.elegans development and responsible for chitin deposition in the eggshell and pharynx, respectively.Dev.Biol.Zhang, Y., Foster, J.M., Nelson, L.S., Ma, D.and Carlow C.K.S.
    1984The cleavage site for the restriction endonuclease EcoRV is 5'-GAT^ATC-3'.GeneSchildkraut, I., Banner, C.D.B., Rhodes, C.S., and Parekh, S.
    1987The cleavage site for the restriction endonucleases BanI and HgiCI is 5' ...G^GPyPuCC ...3'.Nucl.Acids Res.Schildkraut, I., Lynch, J., and Morgan, R.
    2014The CLO3403/CLO3404 Two-Component System of Clostridium botulinum E1 Beluga Is Important for Cold Shock Response and Growth at Low TemperaturesAppl Environ MicrobiolMascher G, Derman Y, Kirk DG, Palonen E, Lindström M, Korkeala H
    2013The COMBREX project design methodology and initial resultsPLOS ONE Anton BP, Chang YC, Brown P, Choi HP, Faller LL, Guleria J, Hu Z, Klitgord N, Levy-Moonshine A, Maksad A, Mazumdar V, McGettrick M, Osmani L,Pokrzywa R, Rachlin J, Swaminathan R, Allen B, Housman G, Monahan C, Rochussen K, Tao K, Bhagwat AS, Brenner SE, Columbus L, de Crécy-Lagard V, Ferguson D, Fomenkov A, Gadda G, Morgan RD, Osterman AL, Rodionov DA, Rodionova IA, Rudd KE, Söll D, Spain J, Xu SY, Bateman A,Blumenthal RM, Bollinger JM, Chang WS, Ferrer M, Friedberg I, Galperin MY, Gobeill J, Haft D, Hunt J, Karp P, Klimke W, Krebs C, Macelis D, Madupu R, Martin MJ, Miller JH, O'Donovan C, Palsson B, Ruch P, Setterdahl A, Sutton G, Tate J, Yakunin A, Tchigvintsev D, Plata G, Hu J, Greiner R, Horn D,Sjölander K, Salzberg SL, Vitkup D, Letovsky S, Segrè D, DeLisi C, Roberts RJ, Steffen M, Kasif S.
    2009The complete genome of Teredinibacter turnerae T7901: an intracellular endosymbiont of marine wood-boring bivalves (shipworms).PLoS ONEYang, J.C., Madupu, R., Durkin, A.S., Ekborg, N.A., Pedamallu, C.S., Hostetler, J.B., Radune, D., Toms, B.S., Henrissat, B., Coutinho, P.M., Schwarz, S., Field, L., Trindade-Silva, A.E., Soares, C.A., Elshahawi, S., Hanora, A., Schmidt, E.W., Haygood, M.G., Posfai, J., Benner, J., Madinger, C., Nove, J., Anton, B., Chaudhary, K., Foster, J., Holman, A., Kumar, S., Lessard, P.A., Luyten, Y.A., Slatko, B., Wood, N., Wu, B., Teplitski, M., Mougous, J.D., Ward, N., Eisen, J.A., Badger, J.H.and Distel, D.L.
    2013The complex methylome of the human gastric pathogen Helicobacter pyloriNucleic Acids ResearchJuliane Krebes, Richard D. Morgan, Boyke Bunk, Cathrin Spröer, Khai Luong, Raphael Parusel, Brian P. Anton, Christoph König, Christine Josenhans, Jörg Overmann, Richard J. Roberts, Jonas Korlach, Sebastian Suerbaum
    2014The complex methylome of the human gastric pathogen Helicobacter pyloriNucleic Acids ResKrebes J, Morgan RD, Bunk B, Spröer C, Luong K, Parusel R, Anton BP, König C, Josenhans C, Overmann J, Roberts RJ, Korlach J, Suerbaum S
    1992The corrected nucleotide sequences of the TaqI restriction and modification enzymes reveal a thirteen-codon overlap.GeneBarany, F., Slatko, B., Danzitz, M., Cowburn, D., Schildkraut, I., and Wilson, G.G.
    1999The Cyclization and Polymerization of Bacterially Expressed Proteins Using Modified Self-splicing Inteins.J.Biol.Chem.Evans, T.C., Benner, J.and Xu, M-Q
    2010The Deinococcus radiodurans Snf2 intein caught in the act: Detection of the Class 3 intein signature Block F.branched intermediate.Protein Sci.Brace, L.E., Southworth, M.W., Tori, K., Cushing, M.L.and Perler, F.
    1994The DNA (cytosine-5) methyltransferases.Nucl.Acids Res.Kumar, S., Cheng, X., Klimasauskas, S., Sha, M., Posfai, J., Roberts, R.J., and Wilson, G.G.
    2000The early days of bioinformatics publishingBioinformaticsRoberts, R.J.
    2009The effect of carbon source on the secretome of Kluyveromyces lactis.ProteomicsMadinger, C.L., Sharma S.S., Anton, B.P., Fields, L.G., Cushing, M.L., Canovas, J., Taron, C.H., and Benner, J.S.
    2009The effect of carbon source on the secretome of Kluyveromyces lactisProteomicsMadinger, C.L., Sharma, S.S., Anton, B.P., Fields, L.G., Cushing, M.L., Canovas, J., Taron, C.H. and Benner, J.S.
    1985The effect of site specific methylation on restriction endonuclease digestion.Nucl.Acids Res.McClelland, M., and Nelson, M.
    1987The effect of site-specific methylation on restriction-modification enzymes.Nucl.Acids Res.Nelson, M., and McClelland, M.
    2000The efficiency of Escherichia coli selenocysteine insertion is influenced by the immediate downstream nucleotide.Nucl.Acids Res.Sandman, K.E.and Noren, C.J.
    1994The 'endo-blue method' for direct cloning of restriction endonuclease genes in E.coli.Nucl.Acids Res.Fomenkov, A., Xiao, J.P., Dila, D., Raleigh, E., and Xu, S.Y.
    2001The Energetics of the Interaction of BamHI Endonuclease with its Recognition Site GGATCC.J.Mol.Biol.Engler, L.E., Sapienza, P., Dorner, L.F., Kucera, R., Schildkraut, I.and Jen-Jacobson, L.
    1980The Evolution of Genes: the Chicken Preproinsulin GeneCellPerler, F.B.and Efstratiadis, A.
    2013The Evolution of Genes: the Chicken Preproinsulin GeneCellPerler, F.B.and Efstratiadis, A.
    2008The fidelity Index provides a systematic quantitation of star activity of DNA restriction endonucleases.Nucl.Acids.Res.Wei, H., Therrien, C., Blanchard, A., Guan, S.and Zhu, Z.
    2000The filarial genome project: analysis of the nuclear, mitochondrial and endosymbiont genomes of Brugia malayi.Int.J.Parasitol.Williams, S.A., Lizotte-Waniewski, M.R., Foster, J., Guiliano, D., Daub, J., Scott, A.L., Slatko, B.and Blaxter, M.L.
    2004The first amendment and scientific freedom in the era of bioterrorism.J.Biolaw and BusinessAnton, B.P.
    2013The First Identification and Retrospective Study of Severe Fever With Thrombocytopenia Syndrome in JapanThe Journal of Infectious DiseasesToru Takahashi, Ken Maeda, Tadaki Suzuki, Aki Ishido, Toru Shigeoka, Takayuki Tominaga, Toshiaki Kamei, Masahiro Honda, Daisuke Ninomiya, Takenori Sakai, Takanori Senba, Shozo Kaneyuki, Shota Sakaguchi, Akira Satoh, Takanori Hosokawa, Yojiro Kawabe, Shintaro Kurihara, Koichi Izumikawa, Shigeru Kohno, Taichi Azuma, Koichiro Suemori, Masaki Yasukawa, Tetsuya Mizutani, Tsutomu Omatsu, Yukie Katayama, Masaharu Miyahara, Masahito Ijuin, Kazuko Doi, Masaru Okuda, Kazunori Umeki, Tomoya Saito, Kazuko Fukushima, Kensuke Nakajima, Tomoki Yoshikawa, Hideki Tani, Shuetsu Fukushi, Aiko Fukuma, Momoko Ogata, Masayuki Shimojima, Noriko Nakajima, Noriyo Nagata, Harutaka Katano, Hitomi Fukumoto, Yuko Sato, Hideki Hasegawa, Takuya Yamagishi, Kazunori Oishi, Ichiro Kurane, Shigeru Morikawa, Masayuki Saijo
    2013The Formin Daam1 and Fascin Directly Collaborate to Promote Filopodia FormationCurrent Biology Jaiswal, R., Breitsprecher, D., Collins, A., Correa, I.R., Jr., Xu, M.-Q. and Goode, B.L.
    2013The genetic code constrains yet facilitates Darwinian evolutionNucleic Acids ResFirnberg E, Ostermeier M
    2009The Heme Biosynthetic Pathway of the Obligate Wolbachia Endosymbiont of Brugia malayi as a Potential Anti-filarial Drug Target.PLoS Negl Trop DisWu, B., Novelli, J., Foster, J., Vaisvila, R., Conway, L., Ingram, J., Ganatra, M., Rao, A.U., Hamza, I.and Slatko, B.
    2010The human proteins MBD5 and MBD6 associate with heterochromatin but they do not bind methylated DNAPLoS OneLaget, S., et al.
    1990The identification of an Onchocerca-specific recombinant antigen containing a T cell epitope.J Immunol.Colina, K.F., Perler, F.B., Matsumura, I., Meda, M., and Nutman, T.B.
    1999The in Vitro Ligation of Bacterially Expressed Proteins Using an Intein from Methanobacterium thermoautotrophicum.J.Biol.Chem.Evans, T.C., Benner, J.and Xu, M-Q
    2004The ins and outs of gene expression control.Nat.Biotechnol.Perler, F.B.
    2004The isolation of strand-specific nicking endonucleases from a randomized SapI expression library.Nucl.Acids Res.Samuelson, J.C., Zhu, Z.and Xu, S.Y.
    1999The kinetic mechanism of EcoRI endonuclease.J.Biol.Chem.Wright, D.J., Jack, W.E.and Modrich P.
    2009The Kruppel-like zinc finger protein Glis3 directly and indirectly activates insulin gene transcriptionNucleic Acids Res.Yang, Y., Chang, B.H., Samson, S.L., Li, M.V., Chan, L.
    2007The level of synthesis and secretion of Gaussia princeps luciferase in transfected CHO cells is heavily dependent on the choice of signal peptideJ. BiotechnolKnappskog, S., Ravneberg, H., Gjerdrum, C., Trosse, C., Stern, B., and Pryme I.F.
    2000The LipB protein is a negative regulator of dam gene expression in Escherichia coli.Biochim.Biophys.Acta.Vaisvila, R., Rasmussen, L.J., Lobner-Olsen, A., von Freisleben, U.and Marinus, M.G.
    1993The M.AluI DNA-(cytosine C5)-methyltransferse has an unusually large, partially dispensable, variable region.Nucl.Acids Res.Zhang, B., Tao, T., Wilson, G.G., and Blumenthal, R.M.
    1998The Maltoxe-Binding Protein as a Scaffold for Monovalent Display of Peptides Derived from Phage Libraries.Anal.Biochem.Zwick, M.B., Bonnycastle, L.L.C., Noren, K.A., Venturini, S., Leong, E., Barbas, C.F., Noren, C.J.and Scott, J.K.