Publications

Publications

In addition to using the filters to search, this list may be sorted by clicking on any column header. Titles in orange are linked to the full article text.

Use any combination of the filters and/or perform a keyword(s) search to narrow your results below.

Search Filters
  1. Filter by:
  2. and/or
  3. Clear all filters

Your search returned 1783 results.

Search Results
YearTitleJournalAuthorsApplication(s)
2017A practical guide to the oral microbiome and its relation to health and diseaseKrishnan, K., Chen, T., Paster, B.J.
2017Association of 5-hydroxymethylation and 5-methylation of DNA cytosine with tissue-specific gene expressionEpigeneticsPonnaluri, V.K., Ehrlich, K.C., Zhang, G., Lacey, M., Johnston, D., Pradhan, S., Ehrlich, M.
2017​Colorimetric tests for diagnosis of filarial infection and vector surveillance using non-instrumented nucleic acid loop-mediated isothermal amplification (NINA-LAMP).PLoS OnePoole, C.B., Li, Z., Alhassan, A., Guelig, D., Diesburg, S., Tanner, N.A., Zhang, Y., Evans, T.C. Jr., LaBarre, P., Wanji, S., Burton R.A. and Carlow, C.K.
2017Complete genome and methylome sequences of Salmonella enterica subsp. enterica Serovars Typhimurium, Saintpaul, and Stanleyville from the SARA/SARB collectionGenome AnnounceYao, K., Roberts, R.J., Allard, M.W., Hoffmann, M.
2017Complete genome sequence and methylome analysis of Acinetobacter calcoaceticus 65Fomenkov, A., Vincze, T., Degtyarev, S.K., Roberts, R.J.
2017Complete genome sequence of Kluyveromyces lactis strain GG799, a common yeast host for heterologous protein expressionGenome AnnouncementsChuzel, L., Ganatra, M.B., Schermerhorn, K.M., Gardner, A.F., Anton, B.P., Taron, C.H.
2017Defining the RNaseH2 enzyme-initiated ribonucleotide excision repair pathway in ArchaeaJ. Biol Chem.Heider, M.R., Burkhart, B.W., Santangelo, T.J., Gardner, A.F.
2017DNA damage is a pervasive cause of sequencing errors, directly confounding variant identificationScienceChen, L., Liu, P., Evans, T.C., Jr., Ettwiller, L.M.
2017DNA recognition by the SwaI restriction endonuclease involves unusual distortion of an 8 base pair A:T-rich targetNucl. Acids Res.Shen, B.W., Heiter, D.F., Lunnen, K.D., Wilson, G.G., Stoddard, B.L.
2017DNA target recognition domains in the Type I restriction and modification systems of Staphylococcus aureusNucl. Acids Res.Cooper, L.P., Roberts, G.A., White, J.H., Luyten, Y.A., Bower, E.K., Morgan, R.D., Roberts, R.J., Lindsay, J.A., Dryden, D.T.
2017Dynamics of 5-carboxylcytosine during hepatic differentiation: potential general role for active demethylation by DNA repair in lineage specificationLewis, L.C., Lo, P.C., Foster, J.M., Dai, N., Correa, I.R., Jr., Durczak, P.M., Duncan, G., Ramsawhook, A., Aithal, G.P., Denning, C., Hannan, N.R., Ruzov, A.
2017Evaluating computatonal gene ontology annotationsMethods Mol. Biol.Skunca, N., Roberts, R.J., Steffen, M.
2017Examining Sources of Error in PCR by Single-Molecule Sequencing.PLoS ONEPotapov Vladamir, Ong Jennifer L
2017Functional characterisation of cis-regulatory elements governing dynamic Eomes expressionDevelopmentSimon, C.S. et al.
2017Genome AnnounceGenome Announce.Fomenkov, A., Akimov, V.N., Vasilyeva, L.V., Andersen, D.T., Vincze, T., Roberts, R.J.
2017Highly specific imaging of mRNA in single cells by target RNA-initiated rolling circle amplificationChem SciDeng, Ruijie., Zhang, Kaixiang., Sun, Yupeng., Ren, Xiaojun., Li, Jinghong.
2017Macrocycle peptides delineate locked-open inhibition mechanism for micoorganism phosphoglycerate mutasesNat. Commun.Yu, H., Dranchak, P., Li, Zhiru, MacArthur, R., Munson, M.S., Mehzabeen, N., Baird, N.J., Battalie, K.P., Ross, D., Lovell, Sc., Carlow, C.K.S., Suga, H., Inglese, J.
2017Mechanism and timing of Mcm2-7 ring closure during DNA replication origin licensingNat. Struct. Mol. Biol.Ticau, S., Friedman, L.J., Champasa, K., Correa, I.R., Jr., Gelles, J., Bell, S.P.
2017Methods for structural and functional analyses of intramembrane prenyltransferases in the UbiA superfamilyMethods EnzymolYang, Y., Ke, N., Liu, S., Li, W.
2017N-glycosylation affects the stability and barrier function of the MUC16 mucinJ. Biol Chem.Taniguchi, T., Woodward, A.M., Magnelli, P., McColgan, N.M., Lehoux, S., Jacobo, S.M.P., Mauris, J., Argueso, P.
2017NicE-seq: High resolution open chromatin profilingGenome BiologyPonnaluri, V.K.C., Zhang, G., Estève, P.-O., Spracklin, G., Sian, S., Xu, S.-Y., Benoukraf, T., Pradhan, S.
2017Rapid Time Scale Analysis of T4 DNA Ligase–DNA Binding.BiochemistryBauer, R.J., Jurkiw, T.J., Evans, T.C. Jr. and Lohman, G.J.
2017Removing the needle from the haystack: Enrichment of Wolbachia endosymbiont transcripts from host rematode RNA by Cappable-seqTMPLoS OneLuck, A.N., Slatko, B.E., Foster, J.M.
2017Restriction endonuclease AgeI is a monomer which dimerizes to cleave DNANucleic Acids Res.Tamulaitiene, G., Jovaisaite, V., Tamulaitis, G., Songailiene, I., Manakova, E., Zaremba, M., Grazulis, S., Xu, S.Y., Siksnys, V.
2017Rpn (YhgA-Like) Proteins of Escherichia coli K-12 and their Contribution to Rec-A-Independent Horizontal TransferJ. BacteriolKingston, A.W., Ponkratz, C. and Raleigh, E.A.
2017Sequential formation of two branched intermediates during protein splicing of class three inteinsExtrmophilesTori, K. and Perler, F.
2017Serotyping dengue virus with isothermal amplification and a portable sequencerScientific ReportsYamagishi, J., et al.
2017Targeted enrichment and sequencing of recent endosymbiont-host lateral gene transfersSci Rep.Dunning Hotopp, J.C., Slatko, B.E., Foster, J.M.
2017The GAN exonuclease, or the flap endonuclease Fen1 and RNase HII are necessary for viability of Thermococcus kodakarensisJ. BacteriolBurkhart, B.W., Cubonova, L., Heider, M.R., Kelman, Z., Reeve, J.N., Santangelo, T.J.
2017Using high-throughput barcode sequencing to efficiently map connectomesNucleic Acids ResearchPeikon, I.D., Kebschull, J.M., Vagin, V.V., Ravens, D.I, Sun, Y.-C., Brouzes, E., Correa, I.R., Bressan, D., Zador, A.M.
2017Various Mutations compensate for a deleterious lacZα insert in the replication enhancer of M13 bacteriophagePLoS OneZygiel, E.M., Noren, K.A., Adamkiewicz, M.A., Aprile, R.J., Bowditch, H.K., Carroll, C.L., Cerezo, M.A.S., Dagher, A.M., Hebert, C.R., Hebert, L.E., Mahame, G.M., Milne, S.C., Silvestri, K.M., Sutherland, S.E., Sylvia, A.M., Taveira, C.N., VanValkenburgh, D.J., Noren, C.J., Hall, M.F.
2017Whole genome amplification provides suitable control DNA for use in DNA barcoding applicationsBiop.Bourque, D.A., Naaum, A.M., Distel, D.L., Hanner, R.H.
2016A DsbA-Deficient Periplasm Enables Functional Display of a Protein with Redox-Sensitive Folding on M13 Phage.BiochemistryChen, M., Samuelson, J.C.
2016A Genetic Map for the Only Self-Fertilizing Vertebrate.G3 (Bethesda)Kanamori A, Sugita Y, Yuasa Y, Suzuki T, Kawamura K, Uno Y, Kamimura K, Matsuda Y, Wilson CA, Amores A, Postlethwait JH, Suga K, Sakakura Y.
2016A high-throughput assay for the comprehensive profiling of DNA ligase fidelityNucleic Acids Res.Lohman, G.J., Bauer, R.J., Nichols, N.M., Mazzola, L., Bybee, J., Rivizzigno, D., Cantin, E., Evans, T.C., Jr.
2016A microbiome DNA enrichment method for next-generation sequencing sample preparationCurr Prot Mol Biol.Yigit, E., Feehery, G.R., Langhorst, B.W., Stewart, F.J., Dimalanta, E.T., Pradhan, S., Slako, B., Gardner, A.F., McFarland, J., Sumner, C., Davis, T.B.
2016A mix-and-read drop-based in vitro two-hybrid method for screening high-affinity peptide binders.Sci RepCui, N., Zhang, H., Schneider, N., Tao, Y., Asahara, H., Sun, Z., Cai, Y., Koehler, S.A., de Greef, T.F., Abbaspourrad, A., Weitz, D.A. and Chong, S.
2016A novel enrichment strategy reveals unprecedented number of novel transcription start sites at single base resolution in a model prokaryote and the gut microbiome.BMC GenomicsEttwiller, L., Buswell, J., Yigit, E. and Schildkraut, I
2016Absence of the filarial endosymbiont Wolbachia in seal heartworm (Acanthocheilonema spirocauda) but evidence of ancient lateral gene transfer.J Parasitol.Keroack, C.D., Wurster, J.I., Decker, C.G., Williams, K.M., Slatko, B.E., Foster, J.M. and Williams, S.A.
2016Adapting capillary gel electrophoresis as a sensitive, high-throughput method to accelerate characterization of nucleic acid metabolic enzymesNucleic Acids Res.Greenough, L., Schermerhorn, K.M., Mazzola, L., Bybee, J., Rivizzigno, D., Cantin, E., Slatko, B.E., Gardner, A.F.
2016Adaptive genetic variation distinguishes Chilean blue mussels (Mytilus chilensis) from different marine environments.Ecol Evol. Araneda C, Larraín MA, Hecht B, Narum S.
2016Advanced uracil DNA glycosylase-supplemented real-time reverse transcription loop-mediated isothermal amplification (UDG-rRT-LAMP) method for universal and specific detection of Tembusu virusScientific ReportsTang Y, Chen H, Diao Y
2016AnnoTALE: bioinformatics tools for identification, annotation, and nomenclature of TALEs from Xanthomonas genomic sequences.Sci Rep.Grau, J., Reschke, M., Erkes, A., Streubel, J., Morgan, R.D., Wilson, G.G., Koebnik, R. and Boch, J.
2016Association of 5-hydroxymethylation and 5-methylation of DNA cytosine with tissue-specific gene expressionEpigenetics.Ponnaluri, V.K., Ehrlich, K.C., Zhang, G., Lacey, M., Johnston, D., Pradhan, S. and Ehrlich, M.
2016Binding of 14-3-3 reader proteins to phosphorylated DNMT1 facilitates aberrant DNA methylation and gene expression.Nucleic Acids Res.Esteve, P.O., Zhang, G., Ponnaluri, V.K., Deepti, K., Chin, H.G., Dai, N., Saqum, C., Black, K., Correa, I.R. Jr., Bedford, M.T., Cheng, X. and Pradhan, S.
2016Biosynthesis and Function of Modified Bases in Bacteria and Their Viruses.Chemical ReviewsWeigele, P.W. and Raleigh, E. A.
2016Characterization of innate immunity genes in the parasitic nematode Brugia malayiSymbiosisLibro, S., Slatko, B.E. and Foster, J.M.
2016Characterizing Two Inter-specific Bin Maps for the Exploration of the QTLs/Genes that Confer Three Soybean Evolutionary Traits.Front Plant Sci. Wang W, Liu M, Wang Y, Li X, Cheng S, Shu L, Yu Z, Kong J, Zhao T, Gai J.
2016COMBREX-DB: An experiment centered database of protein function: knowledge, predictions and knowledge gaps. Nucl. Acids Res.Chang, Y.-C., Hu, Z., Rachlin, J., Anton, B.P., Kasif, S., Roberts, R.J. and Steffen, M.
2016Comparative Methylome Analysis of the Occasional Ruminant Respiratory Pathogen Bibersteinia trehalosi.PLoS OneAnton, B.P., Harhay, G.P., Smith, T.P., Blom, J. and Roberts, R.J.