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    YearTitleJournalAuthorsApplication(s)
    2016A DsbA-Deficient Periplasm Enables Functional Display of a Protein with Redox-Sensitive Folding on M13 Phage.BiochemistryChen, M., Samuelson, J.C.
    2016A mix-and-read drop-based in vitro two-hybrid method for screening high-affinity peptide binders.Sci RepCui, N., Zhang, H., Schneider, N., Tao, Y., Asahara, H., Sun, Z., Cai, Y., Koehler, S.A., de Greef, T.F., Abbaspourrad, A., Weitz, D.A. and Chong, S.
    2016A novel enrichment strategy reveals unprecedented number of novel transcription start sites at single base resolution in a model prokaryote and the gut microbiome.BMC GenomicsEttwiller, L., Buswell, J., Yigit, E. and Schildkraut, I
    2016Absence of the filarial endosymbiont Wolbachia in seal heartworm (Acanthocheilonema spirocauda) but evidence of ancient lateral gene transfer.J Parasitol.Keroack, C.D., Wurster, J.I., Decker, C.G., Williams, K.M., Slatko, B.E., Foster, J.M. and Williams, S.A.
    2016Advanced uracil DNA glycosylase-supplemented real-time reverse transcription loop-mediated isothermal amplification (UDG-rRT-LAMP) method for universal and specific detection of Tembusu virusScientific ReportsTang Y, Chen H, Diao Y
    2016AnnoTALE: bioinformatics tools for identification, annotation, and nomenclature of TALEs from Xanthomonas genomic sequences.Sci Rep.Grau, J., Reschke, M., Erkes, A., Streubel, J., Morgan, R.D., Wilson, G.G., Koebnik, R. and Boch, J.
    2016Biosynthesis and Function of Modified Bases in Bacteria and Their Viruses.Chem RevWeigele, P.W. and Raleigh, E. A.
    2016Characterization of innate immunity genes in the parasitic nematode Brugia malayiSymbiosisLibro, S., Slatko, B.E. and Foster, J.M.
    2016Complete Genome and Methylome Sequences of Salmonella enterica subsp. enterica Serovar Panama (ATCC 7378) and Salmonella enterica subsp. enterica Serovar Sloterdijk (ATCC 15791).Genome Announc.Yao, K., Muruvanda, T., Roberts, R.J., Payne, J., Allard, M.W. and Hoffmann, M.
    2016Complete Genome Sequence and Methylome Analysis of Aeromonas hydrophila Strain YL17, Isolated from a Compost Pile.Genome Announc.Lim, Y.L., Roberts, R.J., Ee, R., Yin, W.F. and Chan, K.G.
    2016Complete Genome Sequence of a Strain of Azospirillum thiophilum Isolated from a Sulfide Spring.Genome Announc.Fomenkov, A., Vincze, T., Grabovich, M., Anton, B.P., Dubinina, G., Orlova, M., Belousova, E. and Roberts, R.J.
    2016Complete Genome Sequence of the Engineered Escherichia coli SHuffle Strains and Their Wild-Type Parents Genome Announc.Anton, B.P., Fomenkov, A., Raleigh, E.A. and Berkmen, M.
    2016Comprehensive Profiling of Glycosphingolipid Glycans Using a Novel Broad Specificity Endoglycoceramidase in a High-Throughput Workflow.Albrecht, S., Vainauskas, S., Stöckmann, H., McManus, C., Taron, C.H. and Rudd, P.M.
    2016<a href="http://biorxiv.org/content/early/2016/04/04/047142" target="_blank">Detecting DNA Methylation using the Oxford Nanopore Technologies MinION sequencer</a>bioRxivSimpson, J.T. et al.
    2016Emerging pathogens of gilthead seabream: characterisation and genomic analysis of novel intracellular β-proteobacteria.ISME J.Seth-Smith, M.B.P. et al.
    2016Epidemiological typing of Neisseria gonorrhoeae and detection of markers associated with antimicrobial resistance directly from urine samples using next generation sequencingSex. Transm. InfectGraham, R.M.A. et al.
    2016Expression and purification of the modification-dependent restriction enzyme BisI and its homologous enzymesSci RepXu, S.Y., Klein, P., Degtyarev, S.K.h. and Roberts, R.J.
    2016Folate-/FAD-dependent tRNA methyltransferase from Thermus thermophilus regulates other modifications in tRNA at low temperatures.Genes Cells Yamagami, R., Tomikawa, C., Shigi, N., Kazayama, A., Asai, S.I., Takuma, H., Hirata, A., Fourmy, D., Asahara, H., Watanabe, K., Yoshizawa, S. and Hori, H.
    2016Genetically anchored fluorescent probes for subcellular specific imaging of hydrogen sulfide.AnalystChen, J., Zhao, M., Jiang, X., Sizovs, A., Wang, M.C., Provost, C.R., Huang, J. and Wang, J.
    2016Genetics: profiling DNA methylation and beyondNature MethodsMarx V.Epigenetics, Restriction Enzymes for Epigenetics
    2016Genomic study of the Ket: a PaleoEskimo-related ethnic group with significant ancient North Eurasian ancestry.Sci Rep.Flegontov, P. et al.
    2016Host-Associated Genomic Features of the Novel Uncultured Intracellular Pathogen Ca. Ichthyocystis Revealed by Direct Sequencing of Epitheliocysts.Genome Biol. Evol.Qi, W. et al.
    2016Identification of Ecdysone Hormone Receptor Agonists as a Therapeutic Approach for Treating Filarial Infections.PLoS Negl Trop Dis.Mhashilkar, A.S., Vankayala, S.L., Liu, C., Kearns, F., Mehrotra, P., Tzertzinis, G., Palli, S.R., Woodcock, H.L. and Unnaschm, T.R.
    2016Increasing Genome Sampling and Improving SNP Genotyping for Genotyping-by-Sequencing with New Combinations of Restriction Enzymes G3Fu YB, Peterson G. W., Dong YRestriction Enzyme Digestion, Restriction Enzyme Digestion
    2016Jmjd2/Kdm4 demethylases are required for expression of Il3ra and survival of acute myeloid leukemia cellsGenes & DevAgger, K. et al.
    2016Metagenomic analysis of bloodstream infections in patients with acute leukemia and therapy induced neutropenia.Sci Rep.Gyarmati, P. et al.
    2016mRNA capping: biological functions and applications. Nucleic Acids ResRamanathan, A., Robb, G.B. and Chan, S.H.
    2016omplete Genome Sequence and Methylome Analysis of Bacillus globigii ATCC 49760.Genome Announc.Morgan, R.D.
    2016Phenotypic and molecular analysis of the effect of 20-hydroxyecdysone on the human filarial parasite Brugia malayi.Int J ParasitolMhashilkar, A.S., Adapa, S.R., Jiang, R.H., Williams, S.A., Zaky, W., Slatko, B.E., Luck, A.N., Moorhead, A.R. and Unnasch, T.R.
    2016Reminder to deposit DNA sequencesPublicationScience Blaxter, M., Danchin, A., Savakis, B., Fukami-Kobayashi, K., Kurokawa, K., Sugano, S., Roberts, R.J., Salzberg, S.L. and Wu, C.I.
    2016Sensitive and specific miRNA detection method using SplintR LigasePublication.Nucleic Acids Res.Jin, J., Vaud, S., Zhelkovsky, A.M., Posfai, J. and McReynolds, L.A.
    2016Sensitive Detection of Plasmodium vivax Using a High-Throughput, Colourimetric Loop Mediated Isothermal Amplification (HtLAMP) Platform: A Potential Novel Tool for Malaria Elimination.PLoS Negl Trop DisBritton, S., Cheng, Q., Grigg, M.J., Poole, C.B., Pasay, C., William, T., Fornace, K., Anstey, N.M., Sutherland, C.J., Drakeley, C. and McCarthy, J.S.
    2016Structure of Type IIL Restriction-Modification Enzyme MmeI in Complex with DNA Has Implications for Engineering New Specificities.PLoS Biol.Callahan, S.J., Luyten, Y.A., Gupta, Y.K., Wilson, G.G., Roberts, R.J., Morgan, R.D. and Aggarwal, A.K.
    2016Taxonomer: an interactive metagenomics analysis portal for universal pathogen detection and host mRNA expression profilingGenome BiologyFlygare, S. et al.
    2016The Epigenomic Landscape of Prokaryotes.PLoS Genet.Blow, M.J., Clark, T.A., Daum, C.G., Deutschbauer, A.M., Fomenkov, A., Fries, R., Froula, J., Kang, D.D., Malmstrom, R.R., Morgan, R.D., Posfai, J., Singh, K., Visel, A., Wetmore, K., Zhao, Z., Rubin, E.M., Korlach, J., Pennacchio, L.A. and Roberts, R.J.
    2016The Inhibitory Effect of Non-Substrate and Substrate DNA on the Ligation and Self-Adenylylation Reactions Catalyzed by T4 DNA Ligase. PLoS OneBauer, R.J., Evans, T.C. Jr. and Lohman, G.J.
    2016The Microbiome of Aseptically Collected Human Breast Tissue in Benign and Malignant DiseaseSci Rep.Hieken, T.J. et al.
    2016Type II restriction endonucleases - a historical perspective and more.Nucleic Acids Res Pingoud, A., Wilson, G.G. and Wende, W.
    2016Using glycosidases to remove, trim, or modify glycans on therapeutic proteinsPublication.BioProcess InternationalGuthrie, E.P., Magneilli, P.E.
    2016Visualization of Periplasmic and Cytoplasmic Proteins with a Self-Labeling Protein Tag.J BacteriolKe, N., Landgraf, D., Paulsson, J. and Berkmen, M.
    2015A database for DNA restriction and modification: enzymes, genes and genomes. Nucleic Acids ResearchRoberts, R.J., Vincze, T., Posfai, J., Macelis, D.
    2015A high-throughput assay for the comprehensive profiling of DNA ligase fidelityNucleic Acids ResLohman GJ, Bauer RJ, Nichols NM, Mazzola L, Bybee J, Rivizzigno D, Cantin E, Evans TC Jr.
    2015A lipid switch unlocks Parkinson's disease-associated ATP13A2Proc Natl Acad Sci U S AHolemans T., Sørensen DM., Veen S., Martin S., Hermans D., Kemmer GC., Haute C., Baekelandt V., Pomorski TG., Agostinis P., Wuytack F., Palmgren M., Eggermont J., Vangheluwe P.
    2015A metagenomics and case-control study to identify viruses associated with bovine respiratory disease.J VirolTerry Fei Fan Ng, Nikola O Kondov, Xutao Deng, Alison Van Eenennaam, Holly L Neibergs, Eric DelwartcDNA Synthesis
    2015A New Approach to Produce HIV-1 Envelope Trimers: BOTH CLEAVAGE AND PROPER GLYCOSYLATION ARE ESSENTIAL TO GENERATE AUTHENTIC TRIMERS.J Biol ChemAlSalmi W., Mahalingam M., Ananthaswamy N., Hamlin C., Flores D., Gao G., Rao V.B.
    2015A Proline-Rich Domain in the Genotype 4 Hepatitis E Virus ORF3 PLoS OneWang H., Fangxiao J., Liang H., Gu H.
    2015A simple bridging flocculation assay for rapid, sensitive and stringent detection of gene specific DNA methylationSci RepWee E., Ngo T., Trau M.Epigenetics, DNA Enrichment
    2015A Structural and Functional Comparison Between Infectious and Non-Infectious Autocatalytic Recombinant PrP ConformersPLoS PathogNoble GP., Wang DW., Walsh DJ., Barone JR., Miller MB., Nishina KA., Li S., Supattapone S.
    2015Activation and enhancement of Fredericamycin A production in deepsea-derived Streptomyces somaliensis SCSIO ZH66 by using ribosome engineering and response surface methodology.Microb Cell FactYonghe Zhang, Huiming Huang, Shanshan Xu, Bo Wang, Jianhua Ju, Huarong Tan, Wenli LiHigh-Fidelity PCR
    2015Adapting capillary gel electrophoresis as a senisitive, high-throughput method to accelerate characterization of nucleic acid metabolic enzymesNucleic Acids ResGreenough, L., Schermerhorn K.M., Mazzola, L., Bybee, J., Rivizzigno, D., Cantin, E., Slatko, B.E., Gardner, A.F.