Home Research Publications

Publications

We believe that basic research and the cultivation of scientific knowledge is critical for us to stay connected with our customers and to drive scientific breakthroughs. At NEB, over 30 labs participate in research projects, which are aided by post-doctoral fellows and students in Masters and Ph.D. programs. NEB researchers have authored or co-authored over 1,000 publications (as of 1/17) many of which are in peer-reviewed journals. Further, NEB products have been used successfully in numerous publications by scientists throughout the world.

Use the filters below to search for publications by year, journal or keyword. This list may be sorted by clicking on any column header.

Videos

Basic Research

Learn more about NEB’s commitment to basic research

Search Our Publications

In addition to using the filters to search, this list may be sorted by clicking on the sort options. Titles in orange are linked to the full article text.

Use any combination of the facets and/or perform a keyword(s) search to narrow your results below.

Search Filters

Filter by:
1. Year
2. Journal
3. Only Show NEB publications
and/or
Search keyword(s):
Clear all filters

Your search returned 1795 results.

Search Results
Year	Title	Journal	Authors	Application(s)
2004	The first amendment and scientific freedom in the era of bioterrorism.	J.Biolaw and Business	Anton, B.P.
2013	Vectors	Brenner's Encyclopedia of Genetics	Anton, B.P.
2005	Live chemical reports from the cell surface	Chem. Biol.	Cravatt B.F.
2011	Comparitive characterization of the PvuRts11 family and application in mapping genomic 5-hydroxymethylcytosine	Nucl. Acids Res.
2015	Restriction Cascade Exponential Amplification (RCEA) assay with an attomolar detection limit: a novel, highly specific, isothermal alternative to qPCR	Scientific Reports
	Optimization of Medium Composition for Production pf Recombinant
	The level of synthesis and secretion of Gaussia princeps
	Targeting of tumor blood vessels
	waffles
	Rapid Low-Cost Detection of Zika Virus Using Programmable Biomolecular Components
	Culture-independent genomic characterisation of Candidatus Chlamydia
	Efficient DNA ligation in DNA-RNA hybrid helices by Chlorella
2003	Purification and characterization of the beta-trefoil fold protein barley alpha-amylase/subtilisin inhibitor overexpressed in Escherichia coli	Protein Expr. Purif.	Bonsager, B.C., et al.
2013	The haplotype-resolved genome and epigenome of the aneuploid HeLa cancer cell line	Nature	Adey, A. et al.
2006	Semisynthesis and characterization of mammalian thioredoxin reductase	Biochem.	Eckenroth, B., et al.
2010	Labeling cell structures and tracking cell lineage in zebrafish using SNAP-Tag	Dev. Dynamics	Campos, C. et al.
2010	Targeted photoswitchable probe for nanoscopy of biological structures	ChemBioChem	Dellagiacoma, C. et al.
2010	Cloning the human vitamin D receptor into the pTwin-1 expression vector	J Steroid Biochem Mol Biol	Collins, E. D., et. al.
2007	Tracking of human Y receptors in living cells- A fluorescence approach	Peptides	Böhme. et al.
2008	A designed protein for the specific and covalent heteroconjugation of biomolecules	Bioconj. Chem.	Chidley C. et al.
2009	Indo-1 Derivatives for local calcium sensing	JACS Chemical Biology	Bannwarth et. al.
2009	Characterization and subcellular localization of bacterial flotillin homologue	Microbiology	Donovan C. et al.
2009	Centromere assembly requires the direct recognition of CENP-A nucleosomes by CENP-N	Nat. Cell Biol.	Carroll C.W. et al.
2009	A new family of receptor tyrosine kinases with a venus flytrap binding domain in insects and other invertebrates activated by aminoacids	PLoS One	Ahier A. et al.
2009	Direct observation of the nanoscale dynamics of membrane lipids in a living cell	Nature	Eggeling C. et al.
2010	Lighting up multiprotein complexes: lessons from GPCR oligomerization	Trends Biotechnol	Ciruela F. et al.
2009	HTRF: A technology tailored for drug discovery - a review of theoretical aspects and recent applications	Curr. Chem. Genomics	Degorce F. et al.
2009	Centromere-specific assembly of CENP-a nucleosomes is mediated by HJURP	Cell	Foltz D.R. et al.
2012	Clathrin promotes centrosome integrity in early mitosis through stabilization of centrosomal ch-TOG	J. Cell Bio.	Foraker, A.B., et al.
2011	Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation	Nature	Ficz, G., et al.
2010	Peptides from phage display library modulate gene expression in mesenchymal cells and potentiate osteogenesis in unicortical bone defects	Vis. Exp.	Balian, G. et al.	Phage Display
2008	Cellular Ser/Thr-kinase assays using generic peptide substrates	Curr. Chem. Gen.	Adams D. G. et al.
2009	Membrane proteins follow multiple pathways to the basolateral cell surface in polarized epithelial cells	J. Cell Biol.	Farr G. A. et al.
2008	An engineered protein tag for multiprotein labeling in living cells	Chemistry & Biology	Gautier A. et al.
2008	AGT/SNAP-Tag: A versatile tag for covalent protein labeling from probes and tags to study biomolecular function	Ed. Edited by Miller, L. W.	Gautier A. et al.
2009	Selective cross-linking of interacting proteins using self-labeling tags	J. Am. Chem. Soc.	Gautier A. et al.
2005	Site-specific immobilization of proteins in a microarray using intein-mediated protein splicing	Bioorg. Med. Chem. Lett.	Girish, A., et al.
2011	Targeting choroid plexus epithelia and ventricular ependyma for drug delivery to the central nervous system	BMC Neurosci	Gonzalez, A.M. et al.	Phage Display
2006	Intein-mediated in vitro synthesis of lipidated Ras proteins	Chem. Commun. (Camb)	Gottlieb, D., et al.
2003	Cytosine methylation by the SuaI restriction-modification system: implications for genetic fidelity in a hyperthermophilic archaeon.	J.Bacteriol.	Grogan, D.W.
2011	Potent Anti-Tumor Effect Generated by a Novel Human Papilllomavirus (HPV) Antagonist Peptide Reactivating the pRb/E2F Pathway	PLoS One	Guo, C.P. et al.
2004	Intein-mediated fusion expression, high efficient refolding, and one-step purification of gelonin toxin	Protein Expr Purif.	Guo, C., et al.
2007	Intein-mediated expression is an effective approach in the study of beta-defensins	Biochem Biophys Res Commun	Diao, H., et. al.
2010	Radiation-guided drug delivery to mouse models of lung cancer	Clin. Cancer Res.	Hairiri, G. et al.
2001	In vitro assembly of phytochrome B apoprotein with synthetic analogs of the phytochrome chromophore	Proc. Natl. Acad. Sci. USA	Hanzawa, H., et al.
2010	Stimulated emission depletion nanoscopy of living cells using SNAP-Tag fusion proteins	Biophys. J.	Hein B. et al.
2006	Evolving the substrate specificity of O6 alkylguanine DNA alkyltransferase through loop insertion for applications in molecular imaging	ACS Chem Biol.	Heinis C. et al.
2011	Ordered and dynamic assembly of single spliceoseoms	Science	Hoskins, A. et al.
2005	A versatile system for the expression of nonmodified bacteriocins inEscherichia coli	J. Appl. Microbiol.	Ingham, A.B., et al.
2006	The N terminus of GTP gamma S-activated transducin alpha-subunit interacts with the C terminus of the cGMP phosphodiesterase gammasubunit	J. Biol. Chem.	Grant, J., et al.
2010	Ligand regulation of the quaternary organization of cell surface M3 muscarinic acetylcholine receptors analyzed by fluorescence resonance energy transfer (FRET) imaging and homogenous time-resolved FRET	J. Biol. Chem.	Alvarez-Curto J. et al.
2010	Chemically ubiquitylated PCNA as a probe for eukaryotic translesion DNA synthesis	Nat. Chem. Biol.	Chen, J., et al.
2008	Photobleaching-free infrared near-field microscopy localizes molecules in neurons	J. App. Phys.	Generosi J. et al.
2008	Caged substrates for protein labeling and immobilization	Chembiochem	Banala J. et al.
2008	Caged substrates for protein labeling and immobilization	Chembiochem	Banala J. et al.
2008	AMPA receptor imaging by infrared scanning near-field optical microscopy	Physica Status Solidi C: Current Topics in Solid State Physics	Generosi J. et al.
2004	Specific and covalent targeting of conjugating and deconjugating enzymes of ubiquitin-like proteins	Mol. Cell Biol.	Hemelaar, J.et al.
2002	Autoregulation of a bacterial sigma factor explored by using segmental isotopic labeling and NMR	Proc. Natl. Acad. Sci. USA	Camarero, J.A., et al.
2010	Vascular-Targeting Anti-Oxidant Therapy in a Model of Hypertension and Stroke	J. Cardiovasc. Pharmacol	Greig, J.A. et al.
1987	Properties and uses of restriction endonucleases.	Methods Enzymol.	Brooks, J.E.
2010	Engineering of a synthetic electron conduit in living cells	Proc. Natl. Acad. Sci. USA	Jensen, H.M., et al.
2005	N-Glycans of Caenorhabditis elegans are specific to developmental stages	J. Biol. Chem.	Cipollo, J.F., Awad, A.M., Costello, C.E., Hirschberg, C.B.
2016	Comparison of intraspecific, interspecific and intergeneric chloroplast diversity in Cycads.	Sci Rep.	Jiang, G.F. et al.
2012	Functional importance of Dicer protein in the adaptive cellular response to hypoxia	J. Biol. Chem.	Ho, J.J., et al.
2002	Helminth genomics: from gene discovery to genome sequencing.	Trends Parasitol	Foster, J.M.and Johnston, D.A.
2015	Considerations and protocols for the synthesis of custom protein labeling probes	Metholds Mol Biol	Correa, I.R. Jr.
2014	Live-cell reporters for fluorescence imaging	Curr Opin Chem Biol	Corrêa IR Jr.
2003	Directed evolution of O6-alkylguanine-DNA alkyltransferase for efficient labeling of fusion proteins with small molecules in vivo	Chem. Biol.	Juillerat A. et al.
2005	Engineering substrate specificity of O6-alkylguanine-DNA alkyltransferase for specific protein labeling in living cells	ChemBioChem	Juillerat A. et al.
2016	Phytochromes function as thermosensors in Arabidopsis.	Science	Jung, J-H. et al.
2010	Artificial neural network study on organ-targeting peptides	J. Comput. Aided. Mol. Des.	Jung, E. et al.
2016	Jmjd2/Kdm4 demethylases are required for expression of Il3ra and survival of acute myeloid leukemia cells	Genes & Dev	Agger, K. et al.
2008	SNAP-tag Technologies: Novel tools to study protein function	NEB Expressions	Johnson K.
2008	Diffusion and directed movement: in vitro motile properties of fission yeast kinesin-14 Plk1	J. Biol. Chem.	Fururta, K. et al.
2009	Visualizing biochemical activities in living cells	Nat Chem Biol	Johnsson K.
2003	Kinetic analysis of the coordinated interaction of SgrAI restriction endonuclease with different DNA targets.	J.Biol.Chem.	Hingorani, K.and Bitinaite, J.
2006	Reactivity of intein thioesters: appending a functional group to a protein	Chembiochem.	Kalia, J., et al.
2010	Rapid optical imaging of EGF receptor expression with a single-chain antibody SNAP-tag fusion protein	Eur. J. Med. Mol. Imaging	Kampmeier, F. et al.
2009	Site-Specific, covalent labeling of recombinant antibody fragments via fusion to an engineered version of 6-O-alkylguanine DNA alkyltransferase	Bioconjug Chem.	Kapmeier F. et al.
2011	The MspJI family of modification-dependent restriction endonucleases for epigenetic studies	Proc. Natl. Acad. Sci.	Cohen-Karni, D, et al.
2007	Authentic interdomain communication in an RNA helicase reconstituted by expressed protein ligation of two helicase domains	FEBS J.	Karow, A., et al.
2010	Analysis of p300/CBP histone acetyltransferase regulation using circular permutation and semisynthesis	J. Am. Chem. Soc.	Karukurichi, K. et al.
2008	Targeted nanoparticles for imaging incipient pancreatic ductal adenocarcinoma	PLoS Med.	Kelly, K.A. et al.
2003	A general method for the covalent labeling of fusion proteins with small molecules in vivo	Nature Biotechnology	Keppler A. et al.
2004	Labeling of fusion proteins with synthetic fluorophores in live cells	PNAS	Keppler A. et al.
2004	Labeling of fusion proteins of O6-alkylguanine-DNA alkyltransferase with small molecules in vitro and in vivo	Methods	Keppler A. et al.
2006	Fluorophores for live cell imaging of AGT fusion proteins across the visible spectrum	BioTechniques	Keppler A. et al.
2009	Chromophore-assisted laser inactivation of α- and γ-tubulin SNAP-tag fusion proteins inside living cells	ACS Chem. Biol.	Keppler A. et al.
2001	Converting MlyI endonuclease into a nicking enzyme by changing its oligomerization state.	EMBO Reports	Besnier, C.E.and Kong, H.
1998	Analyzing the Functional Organization of a Novel Restriction Modification System, the BcgI System.	J.Mol.Biol.	Kong, H
2014	Whole-genome haplotyping using long reads and statistical methods.	Nature Biotechnology	Kuleshov, K. et al.
2010	Evolutionary divergence in the fungal response to fluconazole revealed by soft clustering	Gen. Bio.	Kuo, D., et al.
2001	Characterization of glycosylated variants of beta-lactoglobulin expressed in Pichia pastoris	Protein Eng.	Kalidas, C., Joshi, L., Batt, C.
2005	Yersinia pestis outer membrane type III secretion protein YscC: expression, purification, characterization, and induction of specific antiserum	Protein Expr. Purif.	Goodin, J. L., et al.
2007	Propagation of centromeric chromatin requires exit from mitosis	J. of Cell Bio.	Jansen L. et al
2008	Templated protein assembly on micro-contact-printed surface patterns. Use of the SNAP-tag protein functionality	Langumuir	Iversen L. et al.
2004	Manipulation of carrier proteins in antibiotic biosynthesis	Chem. Biol.	La Clair, J.J. et al.
2008	Novel endo-alpha-N-acetylgalactosaminidases with broader substrate specificity.	Glycobiology	Koutsioulis, D., Landry, D.and Guthrie E.P.
2010	Potential amyloid plaque-specific peptides for the diagnosis of Alzheimer's disease	Neurobiol. Aging.	Larbanoix, L. et al.
2007	Inducing and sensing protein-protein interactions in living cells by selective cross-linking	Angew Chem. Int. Ed	Lemercier, G. et al.
2010	Peptide ligands that use a novel binding site to target both TGF-β receptors	Mol. Biosyst.	Li, L. et al.
2010	Novel peptide-dendrimer conjugates as drug carriers for targeting nonsmall cell lung cancer	Int. J. Nanomedicine	Liu, J. et al.
2012	Characterization of transcription factors that regulate the Type IV secretion system and riboflavin biosynthesis in Wolbachia of Brugia malayi	PLOS One	Li, Liz and Carlow, C.
2012	SHuffle, a novel Escherichia coli protein expression strain capable of correctly folding disulfide bonded proteins in its cytoplasm	Microbial Cell Factories	Lobstein, J., Emrich, C.A., Jeans, C., et al.
2015	The evolutionary history of the embiotocid surfperch radiation based on genome-wide RAD sequence data.	Mol Phylogenet Evol.	Longo G, Bernardi G.
2012	Detection of miRNAs with a nanopore single-molecule counter	Expert Rev. Mol. Diagn.	Gu, L.Q., et al.
2001	The nicking endonuclease N.BstNBI is closely related to Type IIs restriction endonucleases MlyI and PleI.	Nucl.Acids Res.	Higgins, L.S., Besnier, C.and Kong H.
2014	Concurrent transcriptional profiling of Dirofilaria immitis and its Wolbachia endosymbiont throughout the nematode life cycle reveals coordinated gene expression	BMC Genomics	Luck, A.N., Evans, C.C., Foster, J.M., et al.
2002	Expression of the class 1 outer-membrane protein of Neisseria meningitidis in Escherichia coli and purification using a self-cleavable affinity tag	Protein Expr. Purif.	Humphries, H. E., Christodoulides, M. and Heckels, J. E.
2011	A SNAP-tagged detivative of HIV-1 - A versatile tool to study virus-cell interactions	PLoS One	Eckhardt, M. et al.
2011	A peptide to dimerized translationally controlled tumor protein modulates allergic reactions	J. Mol. Med.	Kim, M.
2003	Covalent and selective immobilization of fusion proteins	JACS	Kindermann M. et al.
2004	Synthesis and characterization of bifunctional probes for the specific labeling of fusion proteins	Bioorg. Med. Chem. Lett.	Kindermann M. et al.
2013	Targeted delivery of proapoptotic peptides to tumor-associated macrophages improves survival	Proc. Natl. Acad. Sci.	Cieslewicz, M. et al	Phage Display
2013	RNA-Methylation-Dependent RNA Processing Controls the Speed of the Circadian Clock	Cell	Fustin, J.-M. et al.
2013	Efficient genome editing in Caenorhabditis elegans by CRISPR-targeted homologous recombination	Nucleic Acids Res	Chen C, Fenk LA, de Bono M	Gibson Assembly®
	Production of disulfide-bonded proteins in Escherichia coli		Berkmen, M.
2006	Fluorescence-mediated analysis of mitochondrial preprotein import in vitro	Anal. Biochem.	Krayl M. et al.
2010	Localizable and Highly Sensitive Calcium Indicator Based on a BODIPY Fluorophore	Anal. Chem.	Kamiya M. and Johnsson K.
2010	Triplet imaging of oxygen consumption during the contraction of a single smooth muscle cell	Biophys. J.	Geissbuehler M. et al.
2010	Purification of untagged HIV-1 reverse transcriptase by affinity chromatography	Protein Expr. Purif.	Lu, M., et. al.
2010	D-peptide inhibitors of the p53-MDM2 interaction for targeted molecular therapy of malignant neoplasms	Proc. Natl. Acad. Sci.	Liu, M. et al.
2012	Production of disulfide-bonded proteins in Escherichia coli	Protein Expression and Purification	Berkmen, M.
2012	Oxidative folding of proteins in Escherichia coli	BioProcess International	Berkmen, M.
2012	Oxidative folding of proteins in Escherichia coli	BioPharm International	Berkmen, M.
2008	Subunit-specific surface mobility of differentially labeled AMPA receptor subunits	Eur. J. Cell Biol.	Kropf M. et al.
2009	Neuroprotective secreted amyloid precursor protein acts by disrupting amyloid precursor protein dimers	J. Biol. Chem.	Gralle M. et al.
1998	Active site mutants of a cyclosporin A-insensitive cyclophilin from Brugia malayi: effect on catalysis and drug binding.	Mol.Biochem.Parasitol.	Ma, D.and Carlow, C.K.S.
1999	Molecular characterization of FKBP13 from filarial parasites.	Mol.Biochem.Parasitol.	Ma, D.and Carlow, C.K.S.
2009	Semisynthetic fluorescent sensor proteins based on self-labeling protein tags	J. Am. Chem. Soc.	Brun M.A. et al.
2009	A synthetic peptide mediated actvie targeting of cisplatin liposomes to Tie2 expressing cells	J. Control Release.	Mai, J. et al.
2010	Expression, purification, phosphorylation and characterization of recombinant human statherin	Protein Expr Purif.	Manconi, B., et. al.
1991	Cross-linking of a monoclonal antibody-antigen complex enables detection of parasite antigen in immunoblots and in an expression library.	Mol.Biochem.Parasitol.	Awobuluyi, M., Mania, C.V., and Carlow, C.K.S.
2009	Strategies for successful recombinant expression of disulfide bond-dependent proteins in Escherichia coli	Microbial Cell Factories	de Marco, A.
2010	A novel melanoma-targeting peptide screened by phage display exhibits antitumor activity	J. Mol. Med.	Matsuo, A.L. et al.
2010	Photoactivatable and photoconvertible fluorescent probes for protein labeling	ACS Chem. Biol. Asap	Maurel D. et al.
2008	Cell-surface protein-protein interaction analysis with time-resolved FRET and SNAP-tag technologies: application to GPCR oligomerization	Nature Methods	Maurel D. et al.
2009	"Adenosine Triphosphate Stimulates Aquifex aeolicus MutL Endonuclease Activity"	PLoS ONE	Mauris, J., & Evans, J
2015	Alternative 3' UTRs act as scaffolds to regulate membrane protein localization.	Nature	Binyamin D Berkovits, Christine Mayr	High-Fidelity PCR
2001	Qualitative detection of apoptotic cells assessed by DNA fragmentation.	Methods Mol.Biol.	McIlwrath, A.J.
2014	p19-mediated enrichment and detection of siRNAs	Methods Mol Biol	Jin J, McReynolds LA, Gullerova M
2014	Mediated enrichment of siRNAs	Methods in Molecular Biology	Jin J., McReynolds L.A. and Gullerova M.
1992	Using Molecular Biological Techniques to Identify and Study Gene Products Involved in Dirofilarial Immunoprophylaxis.	American Heartworm Society	Hough, D.M., Awobuluyi, M.E., McReynolds, L.A., Carlow, C.K.S., and Maina, C.V.
1994	An analysis of the humoral immune response of dogs following vaccination with irradiated infective larvae of Dirofilaria immitis.	Parasite Immunol.	Mejia, J.S., and Carlow, C.K.S.
2006	Covalent labeling of cell-surface proteins for in vivo FRET studies	FEBS Letters	Meyer B.H. et al.
2006	FRET imaging reveals that functional neurokinin-1 receptors are monomeric and reside in membrane microdomains of live cells	Proc. Natl. Acad. Sci. USA	Meyer B.H. et al.
2015	Two new phragmotic ant species from Africa: morphology and next-generation sequencing solve a caste association problem in the genus Carebara Westwood.	Zookeys.	Fischer G, Azorsa F, Garcia FH, Mikheyev AS, Economo EP.
2009	Lateral transport of smoothened from the plasma membrane to the membrane of the cilium	J. Cell Biol.	Milenkovic L. et al.
1997	Human T-Cell Lukemia Virus Type 1 Tax Releases Cell Cycle Arrest Induced by p16INK4a.	J.Virol.	Low, K.G., Dorner, L.F., Fernando, D.B., Grossman, J., Jeang, K.T., and Comb, M.J.
2010	Bacterial charity work leads to population-wide resistance	Nature	Lee, H.H., Molla, M.N., Cantor, C.R., Collina, J.J.
2002	Cho, a second endonuclease involved in Escherichia coli nucleotide excision repair	Proc. Natl. Acad. Sci. US	Moolenaar GF, et al.
2015	Using Next Generation RAD Sequencing to Isolate Multispecies Microsatellites for Pilosocereus (Cactaceae).	PLoS One.	Bonatelli IA, Carstens BC, Moraes EM.
2005	Expression of SMAP-29 cathelicidin-like peptide in bacterial cells by intein-mediated system	Protein Expr. Purif.	Morassutti, C., et al.
2010	Phosphopantetheinyl Transferase-Catalyzed Formation of Bioactive Hydrogels for Tissue Engineering	J. Am. Chem. Soc.	Mosiewicz, K. A. et al.
2007	A Concise Synthesis of the Pennsylvania green fluorophore and labeling of intracellular targets with O6-Benzylguanine Derivatives	Org. Lett.	Mottram L. F. et al.
2014	An RNA aptamer that specifically binds to the glycosylated hemagglutinin of avian influenza virus and suppresses viral infection in cells	PLoS One	Kwon HM, Lee KH, Han BW, Han MR, Kim DH, Kim DE	Glycobiology
2013	Single-stranded DNA library preparation for the sequencing of ancient or damaged DNA	Nat. Protoc.	Gansauge MT, Meyer M.
2009	Targeting of tumor blood vessels: a phage-displayed tumor-homing peptide specifically binds to matrix metalloproteinase-2-processed collagen IV and blocks angiogenesis in vivo	Mol. Cancer Res.	Mueller, J. et al.
2003	A fusion of disciplines: chemical approaches to exploit fusion proteins for functional genomics	Chembiochem	Johnsson N. and Johnsson K.
2004	Specific labeling of cell surface proteins with chemically diverse compounds	J .Am. Chem. Soc.	George N. et al.
2015	microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach.	Parasites & Vectors	Macchiaroli, N. et al.
2014	Production of Disulfide-Bonded Proteins in Escherichia coli	Curr Protoc Mol Biol	Ke N, Berkmen M
2005	Protein chemistry on the surface of living cells	Chembiochem.	Johnsson N. et al.
2007	Chemical tools for biomolecular imaging	ACS Chem. Biol.	Johnsson N. and Johnsson K.
2009	Soluble expression and one-step purification of a neurotoxin Huwentoxin-I in Escherichia coli	Protein Expr Purif.	Che, N., et. al.
2006	Genetically Encoded but Nonpolypeptide Prolyl-tRNA Functions in the A Site for SecM-Mediated Ribosomal Stall	Mol. Cell.	Muto, H., Nakatogawa, H., and Ito, K.
2006	Alteration of sequence specificity of the type II restriction endonuclease HincII through an indirect readout mechanism.	J Biol Chem.	Joshi, H.K., Etzkorn, C., Chatwell, L., Bitinaite, J.and Horton, N.C.
2011	Introduction and historical overview of DNA sequencing	Curr. Prot. Mol. Biol.	Nelson, F.K, et. al.
1987	The effect of site-specific methylation on restriction-modification enzymes.	Nucl.Acids Res.	Nelson, M., and McClelland, M.
1987	Purification and assay of Type II DNA methylases.	Methods Enzymol.	Nelson, M., and McClelland, M.
1987	Enhancement of the apparent cleavage specificities of restriction endonucleases: applications to megabase mapping of chromosomes.		McClelland, M., and Nelson, M.
1984	DNA modification methylases: New uses in the manipulation of DNA.	BioTechniques	Christ, C., and Nelson, M.
1985	The effect of site specific methylation on restriction endonuclease digestion.	Nucl.Acids Res.	McClelland, M., and Nelson, M.
1985	Purification of MboII methylase (GAAGmA) from Moraxella bovis: site specific cleavage of DNA at nine and ten base pair sequences.	Nucl.Acids Res.	McClelland, M., Nelson, M., and Cantor, C.R.
2009	Detection of ligand-induced CNTF receptor dimers in living cells by fluorescence cross correlation spectroscopy	Biochim. Biophys. Acta.	Neugart F. et al.
2015	Dissecting the molecular properties of prokaryotic flotillins	PLoS One	Juri Nio Bach, Marc Bramkamp	SNAP Cell,SNAP Surface
2011	Exonucleases	Curr.Protoc.Mol.Biol.	McReynolds, L.A.and Nichols, N.M.
2011	Endonucleases	Curr Protoc Mol Biol	Nichols, N.M.
	Database of DNA polymerases	Curr Protoc Mol Biol.	Langhorst, B.W. and Nichols, N.M.
2009	DNA Cloning and Engineering by Uracil Excision.	Curr.Protoc.Mol.Biol.	Bitinaite, J.and Nichols, N.M.
2001	Construction of high-complexity combinatorial phage display peptide libraries.	Methods	Noren, K.A.and Noren, C.J.
2008	A target-unrelated peptide in an M13 phage display library traced to an advantageous mutation in the gene II ribosome-binding site.	Anal.Biochem.	Brammer, L.A., Bolduc, B., Kass, J.L., Felice, K.M., Noren, C.J.and Hall, M.F.
2009	Identification and characterization of a peptide with affinity to head and neck cancer	J. Nucl. Med.	Nothelfer, E.M. et al.
1995	Cloning of a pair of genes encoding isoschizomeric restriction endonucleases from Bacillus species: the BspEI and BspMII restriction and modification systems.	Gene	Nwankwo, D.O.
2006	Structure and dynamics of the epidermal growth factor receptor C-terminal phosphorylation domain	Protein Sci.	Lee, N.Y., et al.
2010	Development of SNAP-tag-mediated live cell labeling as an alternative to GFP in Porphyromonas gingivalis	FEMS Immunol. Med. Microbiol.	Nicolle O. et al.
2007	Chemical probes shed light on protein function	Curr. Opin. Struct. Biol.	O'Hare H.M. et al.
2013	A Protocol for Construction of Gene Targeting Vectors and Generation of Homologous Recombinant Embryonic Stem Cells	Methods in Molecular Biology	Hicham Bouabe, Klaus Okkenhaug
2009	"Translational Recoding"	The Wiley Encyclopedia of Chemical Biology, Tadhg P.Begley, Ed	Osborne, E.M.and Noren, C.J.
2014	A simple isothermal DNA amplification method to screen black flies for Onchocerca Volvulus infection	PLoS One	Alhassan, A., Makepeace, B.L., LaCourse, E.J., Osei-Atweneboana, M.Y., Carlow, C.K.S.
2013	The genetic code constrains yet facilitates Darwinian evolution	Nucleic Acids Res	Firnberg E, Ostermeier M
2008	An amalgamation of solid phase peptide synthesis and ribosomal peptide synthesis	Biopolymers	Ottesen, J. et al.
2011	Identification and characterization of protein glycosylation using specific endo- and exoglycosidases.	Methods Mol.Biol.	Magnelli, P., Bielik, A.and Guthrie, E.
2011	Tuning different expression parameters to achieve soluble recombinant proteins in E. coli: Advantages of high-throughput screening	Biotechnology Journal	Correa, A. and Oppezzo, P.
2003	An aspartate aminotransferase of Wolbachia endobacteria from Onchocerca volvulus is recognized by IgG1 antibodies from residents of endemic areas.	Parasitol.Res.	Fischer, P., Bonow, I., Buttner, D.W., Kamal, I.H.and Liebau, E.
2013	Efficient and specific gene knockdown by small interfering RNAs produced in bacteria	Nat Biotechnol.	Huang, L., Jin, J., Deighan, P., Liner, E., McReynolds, L. and Lieberman, J.
2015	Environmental marine pathogen isolation using mesocosm culture of sharpsnout seabream: striking genomic and morphological features of novel Endozoicomonas sp.	Sci Rep.	Katharios, P. et al.
2006	Expression of N-terminal Cys-protein fragments using an intein refolding strategy	Bioorg. Med. Chem.	Hackenberger, C. P., et. al.
2016	Metagenomic analysis of bloodstream infections in patients with acute leukemia and therapy induced neutropenia.	Sci Rep.	Gyarmati, P. et al.
2016	Genomic study of the Ket: a PaleoEskimo-related ethnic group with significant ancient North Eurasian ancestry.	Sci Rep.	Flegontov, P. et al.
2012	Identification and characterization of protein glycosylation using specific endo- and exoglycosidases	Methods Mol Biol.	Magnelli P, Bielik A, Guthrie E.
2012	Identification and characterization of protein glycosylation using specific endo-and exoglycosidases	Methods Mol Biol	Magnelli, P., Bielik, A., Guthrie, E.
2009	Characterization of the Caenorhabditis elegans UDP_Galactopyranose mutase homolog glf-1 reveals an essential role for galactofuranose metabolism in nematode surface coat synthesis.nematode surface coat synthesis.	Dev.Biol.	Novelli, J.F., Chaudhary, K., Canovas, J., Benner, J., Madinger, C., Kelly, P., Hodgkin, J.and Carlow, C.K.
1988	Characterization of clones of the BamHI methyltransferase gene.	Gene	Nathan, P.D.and Brooks, J.E.
2008	RNA Polymerases.	Curr.Protoc.Mol.Biol.	Paschal, B.M., McReynolds, L.A., Noren, C.J.and Nichols, N.M.
2007	Synthetic analogues of glycosylphosphatidylinositol-anchored proteins and their behavior in supported lipid bilayers	J. Am. Chem. Soc.	Paulick, M. G., et al.
2016	Visualization of Periplasmic and Cytoplasmic Proteins with a Self-Labeling Protein Tag.	J Bacteriol	Ke, N., Landgraf, D., Paulsson, J. and Berkmen, M.
1992	Regulation of the BamHI restriction-modification system by a small intergenic open reading frame, bamHIC, in both Escherichia coli and Bacillus subtilis.	J.Bacteriol.	Ives, C.L., Nathan, P.D., and Brooks, J.E.
1989	Characterization of clones of the BamHI methyltransferase gene	J. Cell Biochem.	Nathan, P.D. and Brooks. J.E.
2011	Identification and Characterization of Protein Glycosylation using Specific Endo- and Exoglycosidases	J Vis Exp.	Magnelli PE, Bielik AM, Guthrie EP.
2016	Using glycosidases to remove, trim, or modify glycans on therapeutic proteins	BioProcess International	Guthrie, E.P., Magneilli, P.E.
2009	A Symbolic Interval Inference Approach for Constraint Satisfaction: Implementation of Kinematics Applications	International Journal of Operations Research	Pedamallu, C.S.and Ozdamar, L .
2009	New Simulated Annealing Algorithms for Constrained Optimization.	Asia-Pacific Journal for Operational Research	Ozdamar, L.and Pedamallu.C.S.
2002	InBase, the Intein Database.	Nuc.Acids Res.	Perler, F.B.
2002	Development of a Positive Genetic Selection System for Inhibition of Protein Splicing Using Mycobacterial Inteins in Escherichia coli DNA Gyrase Subunit A.	J.Mol.Micro.Biotechnol.	Adam, E.and Perler, F.B.
2001	Hyperthermophilic Inteins.	Methods Enzymol.	Perler, F.B.
1980	The Evolution of Genes: the Chicken Preproinsulin Gene	Cell	Perler, F.B.and Efstratiadis, A.
2000	InBase, the Intein Database.	Nuc.Acids Res.	Perler, F.B.
2000	Protein Splicing in the Absence of an Intein Penultimate Histidine.	J.Biol.Chem.	Chen, L., Benner, J.and Perler, F.
2000	Protein splicing and its applications.	Curr.Opin.Biotech.	Perler, F.B.and Adam, E.
1998	Protein Splicing of inteins and hedgehog autoproteolysis: structure, function and evolution.	Cell	Perler, F.B.
1998	Breaking up is easy with esters [news; comment].	Nature Struct.Biol.	Perler, F.B.
1999	A natural example of protein trans-splicing.	TIBS	Perler, F.B.
1999	InBase, the New England Biolabs Intein Database.	Nuc.Acids Res.	Perler, F.B.
2004	The ins and outs of gene expression control.	Nat.Biotechnol.	Perler, F.B.
2013	The Evolution of Genes: the Chicken Preproinsulin Gene	Cell	Perler, F.B.and Efstratiadis, A.
2006	Protein splicing mechanisms and applications.	IUBMB Life	Perler, F.B.
2014	Protein splicing: how inteins escape from precursor proteins	J Biol Chem	Mills KV, Johnson MA, Perler FB
2014	Evolution, mechanisms, and applications of intein-mediated protein splicing	J Biol Chem	Perler FB, Allewell NM
2005	The mechanisms of intein-mediated protein splicing: variations on a theme.	IUBMB Life	Mills, K.V.and Perler, F.B.
1986	Cloning and characterization of two Onchocerca volvulus repeated DNA sequences.	Mol.Biochem.Parasitol.	Perler, F.B., and Karam, M.
1987	Genomic Cloning of Recombinant Antigens Detected by Antiserum Against Infective Larvae of Brugia Malayi.	Molecular Paradigms for Eradicating Helminthic Parasites	Arasu, P., and Perler, F.B.
1994	Molecular Cloning of an Onchocerca volvulus Extracellular Cu-Zn Superoxide Dismutase.	Infect.Immun.	James, E.R., McLean, D.C.J., and Perler, F.B.
1997	Compilation and analysis of intein sequences.	Nuc.Acids Res.	Perler, F.B., Olsen, G.J., and Adam, E.
2007	Shining a light on protein expression in living organisms.	Nat Chem Biol	Perler, F.
2009	Protein Splicing: A Versatile Tool for Drug Discovery.	Adv.Drug Deliv.Rev.	Cheriyan, M.and Perler, F.B.
1987	Monoclonal antibodies to parasite antigens: a rapid immunization protocol requiring small numbers of parasites.	J.Parasitol.	Carlow, C.K.S., Edwards, M.K., James, E.R., and Philipp, M.
1987	Protective immunity to Brugia malayi larvae in BALB/c mice: potential of this model for the identification of protective antigens.	Am.J.Trop.Med.Hyg.	Carlow, C.K.S., and Philipp, M.
1987	Brugia malayi: recombinant antigens expressed by genomic DNA clones.	Exp.Parasitol.	Arasu , P., Philipp, M., and Perler, F.
1984	Acetylcholinesterase secreted by intestinal nematodes: a reinterpretation of its putative role of "biochemical holdfast."	Trans.Royal Soc Trop.Med.and Hyg.	Philipp, M.
1990	Antigenic and dynamic properties of the surface of Onchocerca microfilariae.	Trop.Med.Parasitol.	Edwards, M.K., Busto, P., James, E.R., Carlow, C.K.S., and Philipp, M.
2009	Tuning microbial hosts for membrane protein production	Microbial Cell Factories	Freigassner, M., Pichler, H. and Glieder, A.
2007	Distribution plasticity of the human estrogen receptor alpha in live cells: distinct imaging of consecutively expressed receptors	J. Mol. Biol.	Pick H. et al.
2000	Crystal Structure of the Complex of Brugia Malayi Cyclophilin and Cyclosporin A.	Protein Sci.	Ellis, P.J., Carlow, C.K.S., Ma, D.and Kuhn, P.
1998	Crystal Structure of the Complex of Brugia Malayi Cyclophilin and Cyclosporin A.	Biochemistry	Ellis, P.J., Carlow, C.K.S., Ma, D.and Kuhn, P.
2008	Heterologous expression of Mytilus californianus foot protein three (Mcfp-3) in Kluyveromyces lactis	Platko, J.D., et al.	Platko, J.D., et al.
1989	MscI, a type II restriction endonuclease from Micrococcus species which recognizes 5' TGGCCA 3'.	Nucl.Acids Res.	Polisson, C.
2002	A novel cyclophilin from parasitic and free-living nematodes with a unique substrate-and drug-binding domain.	J.Biol.Chem.	Ma, D., Nelson, L.S., LeCoz, K., Poole, C.and Carlow, C.K.S.
2003	Cloning and Biochemical Characterization of Blisterase, a Subtilisin-like Convertase from the Filarial Parasite, Onchocerca volvulus.	J.Biol.Chem.	Poole, C.B., Jin, J.and McReynolds, L.A.
2010	Protein mediated miRNA detection and siRNA enichment using p19.	BioTechniques	Jin, J., Cid, M., Poole, C.B.and McReynolds, L.A.
2010	“Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi”.	Mol.Biochem.Parasitol.	Poole, C.B., Davis, P.J., Jin, J.and McReynolds, L.A.
1996	Carboxy-terminal sequence divergence and processing of the polyprotein antigen from Dirofilaria immitis1.	Mol.Biochem.Parasitol.	Poole, C.B., Hornstra, L.J., Benner, J.S., Fink, J.R., and McReynolds, L.A.
2007	Subtilisin-like proteases in nematodes.	Mol.Biochem.Parasitol.	Poole, C.B., Jin, J.and McReynolds, L.A.
2010	Open source tool for prediction of genome wide protein-protein interaction network based on ortholog information.	Source Code for Biology and Medicine	Pedamallu, C.and Posfai, J.
2011	Characterization of Sulfolobus islandicus rod-shaped virus 2 gp19, a single-strand specific endonuclease.	Extremophiles	Gardner, A.F., Prangishvili, D.and Jack.W.E.
2015	Cell- and Protein-Directed Glycosylation of Native Cleaved HIV-1 Envelope.	J Virol	Pritchard L.K., Harvey D.J., Bonomelli C., Crispin M., Doores K.J.
1999	Parasitic helminth genomics.	Exp.Parasitol.	Blaxter, M., Aslett, M., Guiliano, D., Daub, J.and The Filarial Genome Project
1999	Deep within the Filarial Genome: Progress of the Filarial Genome Project.	Parasitology Today	The Filarial Genome Project
2006	Post-translational covalent labeling reveals heterogeneous mobility of individual G protein-coupled receptors in living cells	ChemBioChem	Prummer M. et al.
2011	New Clues in the Allosteric Activation of DNA Cleavage by SgrAI; Structures of SgrAI Bound to Cleaved Primary Site DNA and Uncleaved Secondary Site DNA.	Acta Crystallogr.F.Structural biology and crystallization communications	Little, E.J., Dunten, P.W., Bitinaite, J.and Horton, N.C.
2010	Phage display probes for imaging early response to bevacizumab treatment	Amino Acids	Cao, Q. et al.	Phage Display
2002	Towards the generation of artificial O6-alkylguanine-DNA alkyltransferases: in vitro selection of antibodies with reactive cysteine residues	ChemBioChem	Damoiseaux, R. et al
2011	Chemical Modification of Proteins in Living Cells	Methods in Protein Chemistry	Hanek, A.; Corrêa, I. R., Jr.
2003	Semisynthesis and application of carboxyfluorescein-labelled biologically active human interleukin-8	Biol. Chem.	David, R., et al.
2013	Targeted drug delivery systems mediated by a novel peptide in breast cancer therapy and imaging	PLoS One	Lu, R.-M. et al	Phage Display
2006	Self-assembling protein arrays on DNA chips by auto-labeling fusion proteins with a single DNA address	Proteomics	Jongsma M.A., Litjens R. H.
2012	In vitro Transcription and Capping of Gaussia Luciferase mRNA Followed by HeLa Cell Transfection	J. Vis. Exp.	Jani, B. and Fuchs, R.
2009	Using chemical approaches to study selenoproteins-Focus on thioredoxin reductases	Biochim. Biophys. Acta.	Hondal, R. J.
2000	Characterization of the Specific DNA Nicking Activity of Restriction Endonuclease N.BstNBI.	Biol.Chem.	Morgan, R., Calvet, C., Demeter, M., Agra, R.and Kong, H.
2003	Structure of Rab GDP-dissociation inhibitor in complex with prenylated YPT1 GTPase	Science	Rak, A., et al.
2011	Cleavage of a model DNA replication fork by a methyl-specific endonuclease.	Nucl.Acids.Res.	Ishikawa, K., Handa, N.Sears, L., Raleigh, E.A.and Kobayashi, I.
1998	Evolutionary evidence for recombination among bacteria in nature.E.coli.	Horizontal Gene Transfer	Milkman, R., Cryderman, D., McKane, M., McWeeny, K.and Raleigh E.A.
1998	Restriction Modification Systems: Where They Are and What They Do.	Bacterial Genomes	Raleigh, E.A.and Brooks, J.E
1999	Molecular evolution of the Escherichia coli chromosome.V.Recombination patterns among strains of diverse origin.	Genetics	Milkman, R., Raleigh, E.A., McKane, M., Cryderman, D.and Pohlman, K.
2004	Transposon-mediated linker insertion scanning mutagenesis of the Escherichia coli McrA endonuclease.	J.Bacteriol.	Anton, B.P.and Raleigh, E.A.
2013	Conjugation	Brenner's Encyclopedia of Genetics	Raleigh, E.A. and Low, K.B.
2013	Abortive Transduction	Brenner's Encyclopedia of Genetics	Raleigh, E.A.
2013	Bacterial Genes	Brenner's Encyclopedia of Genetics	Raleigh, E.A.
2016	Complete Genome Sequence of the Engineered Escherichia coli SHuffle Strains and Their Wild-Type Parents	Genome Announc.	Anton, B.P., Fomenkov, A., Raleigh, E.A. and Berkmen, M.
2016	Derivative Engineered To Be Deficient in All Methylcytosine and Methyladenine Restriction Systems.	Genome Announc.	Jobling, M.G., Raleigh, E.A. and Frank, D.N.
2016	Complete Genome Sequence of NEB 5-alpha, a Derivative of Escherichia coli K-12 DH5 alpha.	Genome Announc.	Anton, B.P. and Raleigh, E.A.
2016	Complete Genome Sequence of Escherichia coli ER1821R, a Laboratory K-12 Derivative Engineered To Be Deficient in All Methylcytosine and Methyladenine Restriction Systems	Genome Announc.	Jobling, M.G., Raleigh, E.A. and Frank, D.N.
1995	On the regulation and diversity of restriction in Esherichia coli.	Gene	Kelleher, J.E., and Raleigh, E.A.
1987	Restriction and modification in vivo by Escherichia coli K12	Methods Enzymol.	Raleigh, E.A.
1991	A Novel Activity in Escherichia coli K-12 That Directs Restriction of DNA Modified at CG Dinucleotides.	J.Bacteriol.	Kelleher, J.E., and Raleigh, E.A.
1992	Organization and function of the mcrBC genes of Escherichia coli K-12.	Mol.Microbiol	Raleigh, E.A.
1994	Response to UV Damage by Four Escherichia coli K-12 Restriction Systems.	J.Bacteriol.	Kelleher, J.E., and Raleigh, E.A.
1988	Genetic dissection of the methylcytosine-specific restriction system mcrB of Escherichia coli K-12.	Gene	Dila, D., and Raleigh, E.A.
2017	Rpn (YhgA-Like) Proteins of Escherichia coli K-12 and their Contribution to Rec-A-Independent Horizontal Transfer	J. Bacteriol	Kingston, A.W., Ponkratz, C. and Raleigh, E.A.
2015	Antigenic properties of the human immunodeficiency virus envelope glycoprotein gp120 on virions bound to target cells	PLoS Pathog	Meron Mengistu, Krishanu Ray, George K Lewis, Anthony L DeVico	SNAP Cell,SNAP Surface
1987	Monoclonal antibody to a unique surface epitope of the human filaria Brugia malayi identifies infective larvae in mosquito vectors.	Proc.Natl.Acad.Sci.USA	Carlow, C.K.S., Franke, E.D., Lowrie, R.C.J., Partono, F., and Philipp, M.
2016	omplete Genome Sequence and Methylome Analysis of Bacillus globigii ATCC 49760.	Genome Announc.	Morgan, R.D.
1990	AciI, a unique restriction endonuclease from Arthrobacter citreus which recognizes 5' CCGC3'.	Nucl.Acids Res.	Polisson, C., and Morgan, R.D.
1988	AseI, a restriction endonuclease from Aquaspirillum serpens which recognizes 5'ATTAAT3'.	Nucl.Acids Res.	Polisson, C., and Morgan, R.D.
1988	BsrI, a unique restriction endonuclease from Bacillus stearothermophilus which recognizes 5'ACTGG3'.	Nucl.Acids Res.	Polisson, C., and Morgan, R.D.
1988	EarI, a restriction endonuclease from Enterobacter aerogenes which recognizes 5'CTCTTC3'.	Nucl.Acids Res.	Polisson, C., and Morgan, R.D.
1988	MseI, a unique restriction endonuclease from Micrococcus species which recognizes 5'T^TAA 3'.	Nucl.Acids Res.	Morgan, R.D.
1989	DrdI, a unique restriction endonuclease from Deinococcus radiodurans which recognizes 5'GACN6GTC3'.	Nucl.Acids Res.	Polisson, C., and Morgan, R.D.
2007	An improved and secreted luciferase reporter for schistosomes.	Mol. Biochem. Parasitol.	Cheng, G. and Davis, R.E.
2007	An improved and secreted luciferase reporter for schistosomes	Mol. Biochem. Parasitol.	Cheng, G. and Davis, R.E.
2005	SNAP-tag mediated live cell labeling as an alternative to GFP in anaerobic organisms	BioTechniques	Regoes A. et al.
2016	Use of the Shuffle Strains in Production of Proteins.	Curr Protoc Protein Sci.	Ren, G., Ke, N. and Berkmen, M.
2011	6-Thioguanine reactivates epigenetically silenced genes in acute lymphoblastic leukemia cells by facilitating proteasome-mediated degradation of DNMT1		Canc. Res.
1995	Minimum duplex requirements for restriction enzyme cleavage near the termini of linear DNA fragments.	BioTechniques	Moreira, R.F., and Noren, C.J.
1996	Potent Inhibition Of T7 Rna-Polymerase With A Truncated T7 Promoter.	Abstracts Of Papers Of The American Chemical Society	Noren, C.J., and Moreira, R.F.
2017	Whole genome amplification provides suitable control DNA for use in DNA barcoding applications	Biop.	Bourque, D.A., Naaum, A.M., Distel, D.L., Hanner, R.H.
2000	Expression and purification of recombinant proteins by fusion to maltose-binding protein.	Mol.Biotechnol.	Riggs, P.
2016	Erratum to: SHuffle, a novel Escherichia coli protein expression strain capable of correctly folding disulfide bonded proteins in its cytoplasm.	Microb Cell Fact.	Lobstein, J., Emrich, C.A., Jeans, C., Faulkner, M., Riggs, P. and Berkmen, M.
1988	Vectors that facilitate the expression and purification of foreign peptides in Escherichia coli by fusion to maltose-binding protein.	Gene	Guan, C.D., Li, P., Riggs, P.D., and Inouye, H.
1997	Detection and Isolation of Recombinant Protein Based on Binding Affinity Reporter	Methods Mol.Biol.	Riggs, P.
2012	SHuffle, a novel Escherichia coli protein expression strain capable of correctly folding disulfide bonded proteins in its cytoplasm		Lobstein, J., Emrich, C.A., Jeans, C., Faulkner, M., Riggs, P. and Berkmen, M.
2012	Engineered derivatives of maltose-binding protein	Protein Engineering	Riggs, P.D.
2007	Uncoupling metallonuclease metal ion binding sites via nudge mutagenesis.	J Biol Inorg Chem	Papadakos, G.A., Nastri, H., Riggs, P.and Dupureur, C.M.
2011	Next-gen expression systems		Ritter, A.
1990	Filarial paramyosin: cDNA sequences from Dirofilaria immitis and Onchocerca volvulus.	Mol.Biochem.Parasitol.	Limberger, R.J., and McReynolds, L.A.
2008	Bacterial species exhibit diversity in their mechanisms and capacity for protein disulfide bond formation.	Proc Natl Acad Sci	Dutton, R.J., Boyd, D., Berkmen, M.and Beckwith, J.
2014	Genomics of CpG methylation in developing and developed zebrafish	G3 (Bethesda)	McGaughey DM, Abaan HO, Miller RM, Kropp PA, Brody LC
2005	Sau421, a Bcgl-like restriction-modification system encoded by the Staphylococcus aureus quadruple-converting phage phi 42	Microbiology	Dempsey, R.M., Carroll, D., Kong, H.M., Higgins, L., Keane, C.T., Coleman, D.C.
1995	Extremozymes: expanding the limits of biocatalysis.	Biotechnology	Adams, M.W.W., Perler, F.B.and Kelly, R.M.
2016	Epidemiological typing of Neisseria gonorrhoeae and detection of markers associated with antimicrobial resistance directly from urine samples using next generation sequencing	Sex. Transm. Infect	Graham, R.M.A. et al.
2010	Optimization of enzymatic reaction conditions for generating representative pools of cDNA from small RNA.	RNA	Munafo, D.and Robb, B.
2001	PubMed Central: The GenBank of the Published Literature.	Proc.Natl.Acad.Sci.	Roberts, R.J.
2001	REBASE-restriction enzymes and methylases.	Nucl.Acids Res.	Roberts, R.J., and Macelis, D.
2001	Comparative genomics of the restriction-modification systems in Helicobacter pylori.	Proc.Natl.Acad.Sci.USA	Lin, L.F., Posfai, J., Roberts, R.J.and Kong, H.
2011	COMBREX – COMputational BRidges to EXperiments.	Biochem.Soc.Trans.	Roberts, R.J.
2003	A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes.	Nucl.Acids Res.	Roberts, R.J., Belfort, M.et al.
2000	REBASE-restriction enzymes and methylases.	Nucl.Acids Res.	Roberts, R.J.and Macelis, D.
2000	The early days of bioinformatics publishing	Bioinformatics	Roberts, R.J.
1998	REBASE-restriction enzymes and methylases.	Nucl.Acids Res.	Roberts, R.J.and Macelis, D.
1999	REBASE-restriction enzymes and methylases.	Nucl.Acids Res.	Roberts, R.J.and Macelis, D.
2004	A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes.	Nucleic Acids and Molecular Biology	Roberts, R.J., Belfort, M.et al.
2004	Identifying protein function - a call for community action.	PLoS Biology	Roberts, R.J.
2015	Ten simple rules to win a nobel prize		Roberts, R.J.
2015	Complete Genome Sequence of Salmonella enterica subsp. enterica Serovar Agona 460004 2-1, Associated with a Multistate Outbreak in the United States	Genome Announc	Hoffmann M, Payne J, Roberts RJ, Allard MW, Brown EW, Pettengill JB
2014	A crime against humanity.	China Policy Review	Roberts, R.J.
2005	How restriction enzymes became the workhorses of molecular biology.	PNAS	Roberts, R.J.
1995	On base flipping.	Cell	Roberts, R.J.
1993	REBASE-restriction enzymes and methylases.	Nucl.Acids Res.	Roberts, R.J.and Macelis, D.
1993	The Restriction Enzymes	Nucleases	Roberts, R.J.and Macelis, D.
1996	Teaching About Science	Accountability in Research	Roberts, R.J.
1996	REBASE--restriction enzymes and methylases.	Nucl.Acids Res.	Roberts, R.J.and Macelis, D.
1994	An amazing distortion in DNA induced by a methyltransferase (Nobel lecture)	Bioscience Reports	Roberts, R.J.
1994	An amazing distortion in DNA induced by a methyltransferase (Nobel lecture)	Angew.Chem.Int.Ed.Engl.	Roberts, R.J.
1994	REBASE - restriction enzymes and methylases	Nucl.Acids.Res.	Roberts, R.J.and Macelis, D.
1997	REBASE-restriction enzymes and methylases.	Nucl.Acids Res.	Roberts, R.J.and Macelis, D.
1997	Homing endonucleases: keeping the house in order.	Nucl.Acids Res.	Belfort, M., and Roberts, R.J.
2012	Marine genome resource sustainability in Central America	Electronic Journal of Biotechnology	Huete-Perez, J.A., Roberts, R.J. and Quezada, F.
2008	Restriction and modification enzymes and their recognition sequences.	Life Illuminated	Roberts, R.J.
2008	The BsaHI restriction-modification system: Cloning, sequencing and characterisation of DNA recognising motifs.	BMC Molecular Biology	Neely, R.K.and Roberts, R.J.
2008	HhaI methyltransferase flips its target base out of the DNA helix.	Life Illuminated	Roberts, R.J.
1992	ApoI, a unique restriction endonuclease from Arthrobacter protophormiae which recognizes 5' RAATTY-3'.	Nucl.Acids Res.	Polisson, C., and Robinson, D.
2008	Orthologues of the Drosophila melanogaster E75 molting control gene in the filarial parasites Brugia malayi and Dirofilaria immitis.	Mol.Biochem.Parasitol.	Crossgrove, K., Maina, C.V., Robinson-Rechavi, M.and Lochner, M.C.
2009	Development of a dual luciferase	TrAC Trends in Analytical Chemistry	Roda, A., Guardigli, M., Michelini, E. and Mirasoli, M.
2009	Bioluminescence in analytical chemistry and in vivo imaging	TrAC Trends in Analytical Chemistry	Roda, A., Guardigli, M., Michelini, E., Mirasoli, M.
2015	Rapid isolation and single-molecule analysis of ribonucleoproteins from cell lysate by SNAP-SiMPull	RNA	Margaret L Rodgers, Joshua Paulson, Aaron A Hoskins	SNAP Cell,SNAP Surface
1996	Comparative analysis of expression of the SalI restriction-modification system in Escherichia coli and Streptomyces	Mol. Gen. Genet.	Alvarez, M.A., Gomez, A., Gomez, P., Brooks, J.E., Rodicio, M.R.
2004	Semisynthesis of a segmental isotopically labeled protein splicing precursor: NMR evidence for an unusual peptide bond at the N-extein-intein junction	Proc. Natl. Acad. Sci. USA	Romanelli, A., et al.
2015	Novel recA-Independent Horizontal Gene Transfer in Escherichia coli K-12	PLoS	Kingston AW, Roussel-Rossin C, Dupont C, Raleigh EA.
2006	Production and purification of recombinant human glucagons overexpressed as intein fusion protein in Escherichia coli	Protein Pept. Lett.	Esipov, R.S., et. al.
2010	Fura-2FF-based calcium indicator for protein labeling	Org. Biomol. Chem.	Ruggiu A. A. et al.
2017	Dynamics of 5-carboxylcytosine during hepatic differentiation: potential general role for active demethylation by DNA repair in lineage specification		Lewis, L.C., Lo, P.C., Foster, J.M., Dai, N., Correa, I.R., Jr., Durczak, P.M., Duncan, G., Ramsawhook, A., Aithal, G.P., Denning, C., Hannan, N.R., Ruzov, A.
2004	Versatile protein biotinylation strategies for potential high-throughput proteomics	J Am. Chem. Soc.	Lue, R.Y., et al.
2002	Multiple pathways of Spx (YjbD) proteolysis in Bacillus subtilis	J. Bacteriol	Nakano, S., et al.
2002	Co-operation and communication between the human maintenance and de novo DNA (cytosine-5) methyltransferases.	EMBO J.	Kim, G.D., Ni, J., Kelesoglu, N., Roberts, R.J.and Pradhan, S.
2001	Intein-mediated rapid purification of cre recombinase	Protein Expr.Purif.	Cantor, E.J.and Chong, S.
2001	The VP1-unique region of parvovirus B19: amino acid variability and antigenic stability	J. Gen. Virol.	Dorsch, S., et al.
2001	The activity of the murine DNA methyltransferase Dnmt1 is controlled by interaction of the catalytic domain with the N-terminal part of the enzyme leading to an allosteric activation of the enzyme after binding to methylated DNA	J. Mol. Biol.	Fatemi, M., Hermann, A., Pradhan, S., Jeltsch, A.
2011	Identification of targeting peptides for ischemic myocardium by in vivo phage display	J. Mol. Cell. Cardiol.	Kanki, S. et al.
2003	Induced protein dimerizaton in vivo through covalent labeling	JACS	Gendreizig, S. et al.
2003	Covalent labeling of fusion proteins with chemical probes in living cells	Chimia	Gendreizig S. et al.
2000	Hybrid mouse-prokaryotic DNA (Cytosine-5) methyltransferase retain the specificity of the parental C-terminal domain.	EMBO J.	Pradhan, S and Roberts, R.J.
2000	Structure and function of the mouse DNA methyltransferase Gene, DNMT1 shows a tripartite structure.	J.Mol.Biol.	Margot, J.B., Aguirre-Arteta, A.M., DiGiacco, B.V., Pradhan, S., Roberts, R.J., Cardoso, M.C.and Leonhardt, H.
1998	Isolation, Characterization and Baculovirus-Mediated Expression of the cDNA Encoding Cytosine DNA Methyltransferase from Pisum Sativum.	Nuc.Acids Res.	Pradhan, S., Cummings, M., Roberts, R.J.and Adams, R.L.P.
2004	Changing the Enzymatic Activity of T7 Endonuclease by Mutations at the Beta-Bridge Site: Alteration of Substrate Specificity Profile and Metal Ion Requirements by Mutation Distant from the Catalytic Domain.	Biochemistry	Guan, C., Kumar, S., Kucera, R.and Ewel, A.
2013	Evaluation of UDP-GlcN Derivatives for Selective Labeling of 5-(Hydroxymethyl)cytosine	Chembiochem	Dai N, Bitinaite J, Chin HG, Pradhan S, Corrêa IR Jr.
2015	Converting a Sulfenic Acid Reductase into a Disulfide Bond Isomerase	Antioxid Redox Signal	Chatelle C, Kraemer S, Ren G, Chmura H, Marechal N, Boyd D, Roggemans C, Ke N, Riggs P, Bardwell J, Berkmen M
2015	Complete Genome Sequence of ER2796, a DNA Methyltransferase-Deficient Strain of Escherichia coli K-12	PLoS One	Anton, B.P., Mongodin, E.F., Agrawal, S., Fomenkov, A., Byrd, D.R., Roberts, R.J. and Raleigh, E.A.
2015	Compounds targeting disulfide bond forming enzyme DsbB of Gram-negative bacteria	Nature Chemical Biology	Landeta, C., Blazyk, J.L., Hatahet, F., Meehan, B.M., Eser, M., Myrick, A., Bronstain, L., Minami, S., Arnold, H., Ke, N., Rubin, E.J., Furie, B.C., Furie, B., Beckwith, J., Dutton, R., Boyd, D.
2015	Converting a Sulfenic Acid Reductase into a Disulfide Bond Isomerase	Antioxid Redox Signal.	Chatelle C, Kraemer S, Ren G, Chmura H, Marechal N, Boyd D, Roggemans C, Ke N, Riggs P, Bardwell J, Berkmen M.
2006	DNA Damage-induced Down-regulation of Human Cdc25C and Cdc2 is Mediated by Cooperation between p53 and Maintenance DNA (Cytosine 5) Methyltransferase 1.	J Biol Chem.	Le Gac, G., Esteve, P., Ferec, C.and Pradhan, S.
2016	Taxonomer: an interactive metagenomics analysis portal for universal pathogen detection and host mRNA expression profiling	Genome Biology	Flygare, S. et al.
2016	WGS for surveillance of antimicrobial resistance: a pilot study to detect the prevalence and mechanism of resistance to azithromycin in a UK population of non-typhoidal Salmonella.	J Antimicrob Chemother.	Nair, S. et al.
2016	Adaptive genetic variation distinguishes Chilean blue mussels (Mytilus chilensis) from different marine environments.	Ecol Evol.	Araneda C, Larraín MA, Hecht B, Narum S.
2014	Myogenic differential methylation: diverse associations with chromatin structure	Biology (Basel)	Chandra S, Baribault C, Lacey M, Ehrlich M	Epigenetics
2014	Overview of cell-free protein synthesis: historic landmarks, commercial systems, and expanding applications	Curr Protoc Mol Biol	Chong S
2014	MBD4 cooperates with DNMT1 to mediate methyl-DNA repression and protects mammalian cells from oxidative stress	Epigenetics	Laget S, Miotto B, Chin HG, Estève PO, Roberts RJ, Pradhan S, Defossez PA
2014	Traceless splicing enabled by substrate induced activation of the Nostoc punctiforme Npu DnaE intein after mutation of a catalytic cystein to serine	J Mol Biol.	Cheriyan, M., Chan, S-H., Perler, F.
2005	A single catalytic domain of the junction-resolving enzyme T7 endonuclease I is a non-specific nicking endonuclease.	Nucl.Acids Res.	Guan, C.and Kumar, S.
2005	Human maintenance DNA (cytosine-5)-methyltransferase and p53 modulate expression of p53-repressed promoters.	Proc.Natl.Acad.Sci.USA	Esteve, P.O., Chin, H.G.and Pradhan, S.
1995	Disruption of the target G-C base-pair by the HhaI methyltransferase.	Gene	Klimasauskas, S., and Roberts, R.J.
1995	Functional analysis of Gln-237 mutants of HhaI methyltransferase.	Nucl.Acids Res.	Mi, S., Alonso, D., and Roberts, R.J.
1995	Parasite Cyclophilins and Antiparasite Activity of Cyclosporin A.	Parasitology Today	Page, A.P., Kumar, S., and Carlow, C.K.S.
1995	CG and CNG methyltransferase in plants	Gene	Pradhan, S., Houlston, C., Cummings, M., Adams, R.L.P.
2010	Methods for detection and measurement of hydrogen peroxide inside and outside of cells	Mol. Cells	Rhee S. G. et al.
2010	The human proteins MBD5 and MBD6 associate with heterochromatin but they do not bind methylated DNA	PLoS One	Laget, S., et al.
2010	Targeting of embryonic stem cells by peptide-conjugated quantum dots	PLoS One	Lu, S. et al.
2010	In vitro genetic reconstruction of bacterial transcription initiation by coupled synthesis and detection of RNA polymerase holoenzyme.	Nucl.Acids.Res.	Asahara, H.and Chong, S.
2010	Chromatin particle spectrum analysis: a method for comparative chromatin structure analysis using paired-end mode next-generation DNA sequencing	Nucleic Acids Research	Kent, N.A., Adams, S., Moorhouse, A., and Paszkiewicz, K.
2010	Benzylguanine Thiol self-assembled monolayers for the immobilization of SNAP-tag proteins on microcontact-printed surface structures	Langmuir	Engin S. et al.
2010	In vitro genetic reconstruction of bacterial transcription initiation by coupled synthesis and detection of RNA polymerase holoenzyme	Nucleic Acids Res.	Asahara, H. and Chong, S.
1996	Thermostable DNA Polymerases.	Enzymes and Proteins from Hyperthermophilic Microorganisms, Advs.Protein Chemistry	Perler, F.B., Kumar, S., and Kong, H.
1994	Restriction and modification. In: Molecular Biology of Bacteriophage T4	American Society for Microbiology, Washington, D.C.	Carlson, K., Raleigh, E.A. and Hattman, S.
2012	Genome Sequence of the Model Hyperthermophilic Archaeon Thermococcus litoralis NS-C	J Bacteriol.	Gardner, A.F., Kumar, S. and Perler, F.B.
2007	New and easy strategy for cloning, expression, purification, and characterization of the 5S subunit of transcarboxylase from Propionibacterium f. shermanii	Prep. Biochem. Biotechnol.	Bhat, R. K. and Berger, S.
2007	Molecular Mechanisms of Transactivation and Doxorubicin-mediated Repression of survivin Gene in Cancer Cells.	J of Biological Chemistry	Esteve, P.O., Chin, H.G.and Pradhan, S.
2007	UHRF1 Plays a Role in Maintaining DNA Methylation in Mammalian Cells.	Science	Bostick, M., Kim, J.K., Esteve, P-O., Clark, A., Pradhan, S and Jacobsen, S.
2007	Use of intein-mediated phosphoprotein arrays to study substrate specificity of protein phosphatases	Biotechniques	Kochinyan, S., et al.
2007	Rational manipulation of carrier-domain geometry in nonribosomal peptide synthetases	ChemBioChem.	Liu E and Bruner S. D.
2007	Automethylation of G9a and its implication in wider substrate specificity and HP1 binding.	Nucl.Acids.Res.	Chin, H.G., Esteve, P.O., Pradhan, M., Benner, J., Patnaik, D., Carey, M.F., and Pradhan, S.
2007	Expressed protein ligation using an N-terminal cysteine containing fragment generated in vivo from a pelB fusion protein	Protein Expr. Purif.	Hauser, P. S., et al.
2008	A comparative study of protein synthesis in in vitro systems: from the prokaryotic reconstituted to the eukaryotic extract-based.	BMC Biotechnol.	Hillebrecht, J.R.and Chong, S.
2008	Optical lock-in detection of FRET using synthetic and genetically encoded optical switches	Biophys. J.	Mao S. et al.
2008	The Wolbachia endosymbiont of Brugia malayi has an active pyruvate phosphate dikinase.	Mol.Biochem.Parasitol.	Raverdy, S., Foster, J.M., Roopenian, E.and Carlow, C.K.
2008	Single-process expression and purification of multiple recombinant protein through cocultivation and affinity purification.	Anal.Biochem.	Porte, M.and Chong, S.
2008	Genome-wide analysis reveals a cell cycle-dependent mechanism controling centromere propagation	J. Cell Biol.	Erhardt, S. et al.
2017	A refined DNA methylation detection method using MspJI coupled quantitative PCR	Analytical Biochemistry	Petell, C.J., Loiseau, G., Gandy, R., Pradhan, S., Gowher, H.
2009	Use of intein-mediated protein ligation strategies for the fabrication of functional protein arrays	Methods Enzymol.	Chattopadhaya, S., et al.
2009	Site-specific covalent labeling of proteins inside live cells using small molecule probes	Bioorg. Med. Chem.	Chattopadhaya, S., et al.
2009	Expanding the chemical Biologist's tool kit: chemical labelling strategies and its applications	Curr. Med. Chem.	Chattopadhaya S. et al.
2009	Computational Prediction of Essential Genes in an Unculturable Endosymbiotic Bacterium, Wolbachia of Brugia malayi.	BMC Microbiol.	Holman, A.G., Davis, P.J., Foster, J.M., Carlow, C.K.S.and Kumar, S.
2002	The retinoblastoma gene product interacts with maintenance human DNA (Cytosine-5) methyltransferase and modulates its activity.	EMBO J.	Pradhan, S.and Kim, G.-D.
2011	Identification and characterization of the cofactor-independent phosphoglycerate mutases of Dirofilaria immitis and its Wolbachia endosymbiont.	Veterinary Parasitology	Li.Z., Galvin, B., Raverdy, S.and Carlow, C.K.S.
2003	Mammalian DNA (cytosine-5) methyltransferases and their expression.	Clin.Immunol.	Pradhan, S.and Esteve P.-O.
2003	Intein-mediated Protein Purification	Methods and Tools in Biosciences and Medicine	Chong, S.and Perler, F.B.
2003	Allosteric Activator Domain of Maintenance Human DNA (Cytosine-5) Methyltransferase and Its Role in Methylation Spreading.	Biochemistry	Pradhan, S.and Esteve P.-O.
1995	M.Hhal binds tightly to substrates containing mismatches at the target base.	Nucl.Acids Res.	Klimasauskas, S.and Roberts, R.J.
2010	Identification and Phylogenetic Analysis of Dirofilaria Ursi (Nematoda: Filarioidea) from Wisconsin Black Bears (Ursus americanus) and its Wolbachia Endosymbiont	J Parasitol.	Michalski, S., Bain, O., Fischer, K.Fishcher, P., Kumar, S.and Foster, J.
2008	Le double jeu de l’épigénétique: Cible et acteur du cancer [Master and servant: epigenetic deregulations as a cause and a consequence of cancer.]	Med Sci (Paris)	Laget, S.and Defossez, P.A.
2004	Substrate specificity and kinetic mechanism of mammalian G9a histone H3 methyltransferase.	J.Biol.Chem.	Patnaik, D., chin, H.G., esteve, P.O., Benner, J., Jacobsen, S.E.and Pradhan, S.
2006	Catalytic properties and kinetic mechanism of human recombinant Lys-9 histone H3 methyltransferase SUV39H1: participation of the chromodomain in enzymatic catalysis.	Biochemistry	Chin, H.G., Patnaik, D., Esteve, P.O., Jacobsen, S.E.and Pradhan.S.
2009	UHRF1 binds G9a and participates in p21 transcriptional regulation in mammalian cells.	Nucl.Acids.Res.	Kim, J.K., Estève, P.O., Jacobsen, S.E.and Pradhan, S.
2010	Genome-wide mapping of alternative splicing in Arabidopsis thaliana	Genome Res	Filichkin, S.A., Priest, H.D., Given, S.A., et al
2003	Coevolution of an aminoacyl-tRNA synthetase with its tRNA substrates	Proc. Natl. Acad. Sci. USA	Salazar, J.C., et al.
2015	Multivalent site-specific phage modification enhances the binding affinity of receptor ligands	Bioconjug Chem	Beech, J., Saleh, L., Frentzel, J., Figler, H., Correa, I.R. Jr., Baker, B., Ramspacher, C., Marshall, M., Dasa, S., Linden, J., Noren, C.J. and Kelly, K.A.
2006	Protein splicing in cis and in trans.	The Chemical Record	Saleh, L.and Perler, F.B.
2008	RimO, a MiaB-like enzyme, methylthiolates the universally conserved Asp88 residue of ribosomal protein S12 in Escherichia coli.	Proc Natl Acad Sci.	Anton, B.P., Saleh, L., Benner, J.S., Raleigh, E.A., Kasif, S.and Roberts, R.J.
2011	Tuned Escherichia coli as a host for the expression of disulfide-rich proteins	Biotechnology Journal	Salinas, G., Pellizza, L., Margenat, M., et al.
2000	Construction and use of pIII-displayed peptide libraries	Phage Display: A Laboratory Manual	Noren, K.A., Saltman, L.H.and Noren, C.J.
2008	Epigenetic mechanisms in mammals.	Cell Mol.Life Sci.	Kim JK, Samaranayake M, Pradhan S.
2009	Regulation of DNMT1 Stability through SET7-Mediated Lysine Methylation in Mammalian Cells.	Proc.Natl.Acad.Sci.	Esteve, P.O., Chin, H.G., Benner, J., Feehery, G.R., Samaranayake, M., Horwitz, G.A., Jacobsen, S.E.and Pradhan, S.
2009	Epigenetic mechanisms in mammals	Cell Mol Life Sci	Kim, J.K., Samaranayake, M., Pradhan, S
2008	CXXC domain of human DNMT1 is essential for enzymatic activity.	Biochemistry	Pradhan, M., Estève, P.O., Chin, H.G., Samaranayke, M., Kim, G.D.and Pradhan, S.
2009	Human condensin function is essential for centromeric chromatin assembly and proper sister kinetochore orientation	PLoS One	Samoshkin A. et al.
2015	CRL4RBBP7 is required for efficient CENP-A deposition at centromeres	J Cell Sci	Julien Mouysset, Samuel Gilberto, Michelle G Meier, Fabienne Lampert, Mukta Belwal, Patrick Meraldi, Matthias Peter	SNAP Cell
2011	Recent developments in difficult protein expression: A guide to E. colistrains, promoters, and relevant host mutations.	Methods in Molecular Biology	Samuelson, J.C.
2011	"Recent Developments in Difficult Protein Expression: A Guide to E.coli strains, Promoters and Relevant Host Mutations" editors Tom C.Evans Jr.and Ming-Qun Xu, Humana Press	Methods Mol.Biol.	Samuelson, J.C.
	"Bacterial Systems" introduction of Membrane Proteins - Strategies for Expression and Isolation		Samuelson, J.C.
2016	A DsbA-Deficient Periplasm Enables Functional Display of a Protein with Redox-Sensitive Folding on M13 Phage.	Biochemistry	Chen, M., Samuelson, J.C.
2009	Rational Design of a Fusion Partner for Membrane Protein Expression in E.coli.	Protein Sci.	Luo, J., Choulet, J.and Samuelson, J.C.
2008	Bioluminescent virion shells; new tools for quantitation of AAV vector dynamics in cells and live animals	Gene Ther.	Asokan, A., Johnson, J.S., Li, C., Samulski, R.J.
2010	Molecular diagnosis of neonatal diabetes mellitus using next-generation sequencing of the whole exome	PLoS One	Bonnefond, A., Durand, E., Sand, O. et al
2006	Deglycosylation of the beta1-subunit of the BK channel changes its biophysical properties	Am. J. Physiol.Cell. Physiol.	Hagen, B.M., Sanders, K.M.
2000	Phage Display of Selenopeptides.	J.Amer.Chem.Soc.	Sandman, K.E., Benner, J.S.and Noren, C.J.
2000	The efficiency of Escherichia coli selenocysteine insertion is influenced by the immediate downstream nucleotide.	Nucl.Acids Res.	Sandman, K.E.and Noren, C.J.
1994	Histone-encoding genes from Pyrococcus: evidence for members of the HMf family of archaeal histones in a non-methanogenic Archaeon*.	Gene	Sandman, K., Perler, F.B., and Reeve, J.N.
2011	Decoding a Substantial Set of Samples in Parallel by Massive Sequencing	PLoS ONE	Neiman, M., Lundin, S., Savolainen, P., Ahmadian, A.
2011	A phage-targeting startegy for the design of spatiotemporal drug delivery from grafted matrices	Fibrogenesis Tissue Repair	Sawada, R. et al.
2008	Reliability of Cycloplegic Autorefractor Measurements to determine Spherical and Astigmatic Refractive Errors in Young Children	Journal of Ophthalmology and Visual Science	Pedamallu, S.B., Reddy, K.S., Pedamallu, R.and Pedamallu, C.S.
2008	Incidence of occult carcinoma in multinodular goiter using histopathological findings.	Internet journal of surgery TM	Pedamallu, R., Pedamallu, S.B., Rama Rao, K.V., and Pedamallu, C.S.
2015	Complete Genome Sequence of Streptomyces sp. strain CCM_MD2014, isolated from topsoil in Woods Hole, Massachusetts	Genome Announc.	Mariita, R.M., Bhatnagar, S., Hanselmann, K., Hossain, M.J., Korlach, J., Boitano, M., Roberts, R.J., Liles, M.R., Moss, A.G., Leadbetter, J.R., Newman, D.K., Dawson, S.C.
2015	Complete Genome Sequence of Curtobacterium sp. strain MR_MD2014, isolated from topsoil in Woods Hole, Massachusetts	Genome Announc.	Mariita, R.M., Bhatnagar, S., Hanselmann, K., Hossain, M.J., Korlach, J., Boitano, M., Roberts, R.J., Liles, M.R., Moss, A.G., Leadbetter, J.R., Newman, D.K., Dawson, S.C.
2003	Assembly of high-affinity insulin receptor agonists and antagonists from peptide building blocks	Proc. Natl. Acad. Sci. USA	Schaffer, L., et al.
2017	The advantages of SMRT™ sequencing.	Genome Biology	Roberts, R.J., Carneiro, M.O., Schatz, M.C.
2015	Involvement of the heterodimeric interface region of the nucleotide binding domain-2 (NBD2) in the CFTR quaternary structure and membrane stability	Sci Rep	Julien M., Chauvet S., Scheckenbach KE., Alfaidy N., Chanson M., Benharouga M.
2015	Pre-Steady-State Kinetic Analysis of a Family D DNA Polymerase from Thermococcus sp. 9°N Reveals Mechanisms for Archaeal Genomic Replication and Maintenance	J Biol Chem	Schermerhorn KM, Gardner AF
2015	Pre-steady-state Kinetic Analysis of a Family D DNA Polymerase from Thermococcus sp. 9°N Reveals Mechanisms for Archaeal Genomic Replication and Maintenance	J Biol Chem	Schermerhorn KM, Gardner AF.
2011	TrbB from conjugative plasmid F is a structurally distinct disulfide isomerase that requires DsbD for redox state maintenance.	J Bacteriol	Hemmis, C.W., Berkmen, M., Eser, M.and Schildbach, J.F.
2002	Self-generated DNA termini relax the specificity of SgrAI restriction endonuclease.	Proc.Natl.Acad.Sci.USA	Bitinaite, J.and Schildkraut, I.
2002	Creation of an Artificial Bifunctional Intein by Grafting a Homing Endonuclease into a Mini-intein.	J.Mol.Biol.	Hall, M.F., Noren, C., Perler, F.and Schildkraut, I.
2001	The Energetics of the Interaction of BamHI Endonuclease with its Recognition Site GGATCC.	J.Mol.Biol.	Engler, L.E., Sapienza, P., Dorner, L.F., Kucera, R., Schildkraut, I.and Jen-Jacobson, L.
2000	Identification of the Metal-Binding Sites of Restriction Endonucleases by Fe2+-Mediated Oxidative Cleavage.	Biochemistry	Hlavaty, J.J., Benner, J.S., Hornstra, L.J.and Schildkraut, I.
2000	Understanding the immutability of restriction enzymes: crystal structure of BglII and its DNA substrate at 1.5 angstrom resolution.	Nature Struct.Biol.	Lukacs, C.M., Kucera, R., Schildkraut, I.and Aggarwal, A.K.
1999	Crystallization and preliminary diffractin analysis of the HincII restriction endonuclease-DNA complex.	Acta Crystallogr.D.Biol.Crystallogr.	Horton, N.C, Dorner, L.F., Schildkraut, I.and Perona J.J.
1993	Compilation of Commercially Available Nucleases	Nucleases	Schildkraut, I.
1993	A unique restriction endonuclease, BcgI, from Bacillus coagulans.	Nucl.Acids Res.	Kong, H., Morgan, R.D., Maunus, R.E., and Schildkraut, I.
1986	Two unique restriction endonucleases from Neisseria lactamica.	Nucl.Acids Res.	Qiang, B.Q., and Schildkraut, I.
1987	NotI and SfiI: restriction endonucleases with octanucleotide recognition sequences.	Methods Enzymol.	Qiang, B.-Q., and Schildkraut, I.
1987	The use of DNA methylases to alter the apparent recognition specificities of restriction endonucleases.	Methods Enzymol.	Nelson, M., and Schildkraut, I.
1987	The cleavage site for the restriction endonucleases BanI and HgiCI is 5' ...G^GPyPuCC ...3'.	Nucl.Acids Res.	Schildkraut, I., Lynch, J., and Morgan, R.
1984	Alteration of apparent restriction endonuclease recognition specificities by DNA methylases.	Nucl.Acids Res.	Nelson, M., Christ, C., and Schildkraut, I.
1984	Screening for and characterizing restriction endonucleases	Genetic Engineering	Schildkraut, I.
1984	The cleavage site for the restriction endonuclease EcoRV is 5'-GAT^ATC-3'.	Gene	Schildkraut, I., Banner, C.D.B., Rhodes, C.S., and Parekh, S.
1984	A type II restriction endonuclease with an eight nucleotide specificity from Streptomyces fimbriatus.	Nucl.Acids.Res.	Qiang, B.Q., and Schildkraut, I.
1994	Direct selection of binding proficient/catalytic deficient variants of BamHI endonuclease.	Nucl.Acids.Res.	Dorner, L.F., and Schildkraut, I.
2007	Selecting targeting of adenoviral vectors to neural precursor cells in the hippocampus of adult mice: new prospects for in situ gene therapy	Stem Cells	Schmidt, A. et al.
2016	Efficient In Situ Detection of mRNAs using the Chlorella virus DNA ligase for Padlock Probe Ligation	RNA	Schneider, N and Meier, M.
2008	Simultaneous protein tagging in two colors	Chemistry & Biology	Schulz C. and Köhn M.
2015	Human sialic acid acetyl esterase: Towards a better understanding of a puzzling enzyme.	Glycobiology	Orizio F., Damiati E., Giacopuzzi E., Benaglia G., Pianta S., Schauer R., Schwartz-Albiez R., Borsani G., Bresciani R., Monti E.
2016	The endoplasmic reticulum: structure, function and response to cellular signaling	Cell Mol Life Sci.	Schwarz, D.S., Blower, M.D.
2011	Mutational and biochemical analysis of the DNA-entry nuclease EndA from Streptococcus pneumoniae	Nucleic Acids Res.	Midon, M., Schäfer, P., Pingoud, A., Ghosh, M., Moon, A.F., Cuneo, M.J., London, R.E. and Meiss, G.
1993	Type II Restriction Endonucleases	Nucleases	Roberts, R.J.and Halford, S.E.
2009	SET7/9 mediated methylation of non-histone proteins in mammalian cells.	Epigenetics	Pradhan, S., Chin, H.G., Esteve, P.O.and Jacobsen, S.E.
1993	The Polyprotien Allergens of Nematodes.	Parasitol.Today	McReynolds, L.A., Kennedy, M.W., and Selkirk, M.E.
1992	Cloning of a cuticular antigen that contains multiple tandem repeats from the filarial parasite Dirofilaria immitis.	Proc.Natl.Acad.Sci.USA	Poole, C.B., Grandea, A.G., III, Maina, C.V., Jenkins, R.E., Selkirk, M.E., and McReynolds, L.A.
2014	Role of lipid rafts and GM1 in the segregation and processing of prion protein	PLoS One	Botto L, Cunati D, Coco S, Sesana S, Bulbarelli A, Biasini E, Colombo L, Negro A, Chiesa R, Masserini M, Palestini P	Glycobiology
1999	Plasmodium vivax, P.cynomolgi, and P.knowlesi: Identification of Homologue Proteins Associated with the Surface of Merozoites.	Exp.Parasitol.	Barnwell, J.W., Galinski, M.R., DeSimone, S.G., Perler, F.and Ingravallo, P.
2016	mRNA capping: biological functions and applications.	Nucleic Acids Res	Ramanathan, A., Robb, G.B. and Chan, S.H.
2015	The ribosome quality control pathway can access nascent polypeptides stalled at the Sec61 translocon	Mol Biol Cell	Malsburg K., Shao S., Hegde RS.
2008	A codon-optimized luciferase from Caussia princeps facilitates the in vivo monitoring of gene expression in the model alga Chlamydomonas reinhardtii.	Curr. Genet.	Shao, N. and Bock, R.
2008	A codon-optimized luciferase from Gaussia princeps facilitates the in vivo monitoring of gene expression in the model alga Chlamydomonas reinhardtii	Curr. Genet.	Shao, N. and Bock, R.
2009	Comparison of distinct protein isoforms of the receptor for advanced glycation end-products expressed in murine tissues and cell lines	Cell Tissue Res.	Gefter, J.V., Shaufl, A.L., Fink, M.P., Delude, R.L.	Glycobiology
2014	Insights into the initiation of JC virus DNA replication derived from the crystal structure of the T-antigen origin binding domain	PLoS Pathog	Meinke G, Phelan PJ, Kalekar R, Shin J, Archambault J, Bohm A, Bullock PA	Gibson Assembly®
2014	Serine and proline-rich ligands enriched via phage-display technology show preferential binding to BCR/ABL expressing cells	Hematol Oncol Stem Cell Ther	Shires K, Shankland I, Mowla S, Njikan S, Jaymacker J, Novitzky N	Phage Display
2015	Developmental exposure to 2,3,7,8-tetrachlorodibenzo-p-dioxin alters DNA methyltransferase (dnmt) expression in zebrafish (Danio rerio)	Toxicol Appl Pharmacol	Aluru N, Kuo E, Helfrich LW, Karchner SI, Linney EA, Pais JE, Franks DG
2004	Cassette-like variation of restriction enzyme genes in Escherichia coli C and relatives.	Nucl.Acids Res.	Sibley, M.H.and Raleigh, E.A.
2010	Evolution of Bacterial Phosphoglycerate Mutases: Non-homologous Isofunctional Enzymes Undergoing Gene Losses, Gains and Lateral Transfers.	PLoS ONE	Foster, J.M., Davis, P.J., Raverdy, S., Sibley, M.H., Raleigh, E.A., Kumar, S.and Carlow, C.K.S.
2012	A versatile element for gene addition in bacterial chromosomes	Nucl.Acids Res.	Sibley, M.H.and Raleigh, E.A.
2009	Illuminating the life of GPCRs	Cell Commun. Signal	Böhme I and Beck-Sickinger A. G.
2006	Protein function microarrays based on self-immobilizing and self-labeling fusion proteins	ChemBioChem.	Sielaff I. et al.
2006	Protein function microarrays based on self-immobilizing and self-labeling fusion proteins	ChemBioChem.	Sielaff I. et al.
2005	Automated isolation techniques for microalgae, pgs.101-116 in "Algal culturing techniques"	Algal culturing techniques	Sieracki, M., Poulton, N., Crosbie, N.
1988	Cloning, purification and characterization of the M.NdeI methyltransferase from Neisseria denitrificans	Gene	Silber, K.R., Polisson, C., Rees, P.A., and Benner, J.S.
2015	Physiologic Stresses Reveal a Salmonella Persister State and TA Family Toxins Modulate Tolerance to These Stresses	PLoS One	Silva-Herzog E, McDonald EM, Crooks AL, Detweiler CS.
2017	Functional characterisation of cis-regulatory elements governing dynamic Eomes expression	Development	Simon, C.S. et al.
2006	Analysis of one million base pairs of Neanderthal DNA	Nature	Green, R.E., Krause, J., Ptak, S.E., Briggs, A.W., Ronan, M.T., Simons, J.F., Du, L., Egholm, M., Rothberg, J.M., Paunovic, M. and Pääbo, S.
2016	Detecting DNA Methylation using the Oxford Nanopore Technologies MinION sequencer	bioRxiv	Simpson, J.T. et al.
2003	Structure of the large FK506-binding protein FKBP51, an Hsp90-binding protein and a component of steroid receptor complexes	Proc. Natl. Acad. Sci. USA	Sinars, C.R., et al.
2014	Trypanosome MKT1 and the RNA-binding protein ZC3H11: interactions and potential roles in post-transcriptional regulatory networks	Nucleic Acids Res	Singh A, Minia I, Droll D, Fadda A, Clayton C, Erben E
2002	Intein-mediated affinity-fusion purification of the Escherichia coliRecA protein	Protein Expr. Purif.	Singleton, S. F., et al.
2014	Insights into bacterial CO2 metabolism revealed by the characterization of four carbonic anhydrases in Ralstonia eutropha H16	AMB Express	Gai CS, Lu J, Brigham CJ, Bernardi AC, Sinskey AJ	Gibson Assembly®
2015	VirB6 and VirB10 from the Brucella type IV secretion system interact via the N-terminal periplasmic domain of VirB6	FEBS Lett	Giraldo A.MV., Mary C., Sivanesan D., Baron C.
2014	Neurospora crassa Female Development Requires the PACC and Other Signal Transduction Pathways, Transcription Factors, Chromatin Remodeling, Cell-To-Cell Fusion, and Autophagy	PLoS One	Chinnici JL, Fu C, Caccamise LM, Arnold JW, Free SJ	Gibson Assembly®
2009	Characterization of RimO, a New Member of the Methylthiotransferase Subclass of the Radical SAM Superfamily.	Biochemistry	Lee, K.H., Saleh, L., Anton, B.P., Madinger, C.L., Benner, J.S., Iwig, D.F., Roberts, R.J., Krebs, C., Booker, S.J.
2005	Covalent immobilization of recombinant fusion proteins with hAGT for single molecule force spectroscopy	Eur. Biophys. J	Kufer S.K. et al.
2008	Construction of intein mediated hGMCSF expression vector and its prufication in Pichia pastoris	Protein Exp. Purif.	Babu, S.K., et. al.
2008	Glycoengineering of the methylotrophic yeast Hansenula polymorpha for the production of glycoproteins with trimannosyl core N-glycan by blocking core oligosaccharide assembly	Biotechnol. J.	Oh, D.B., Park, J.S., Kim, M.W., Cheon, S.A., Kim, E.J., Moon, H.Y., Kwon, O., Rhee, S.K., Kang, H.A.
2008	Improved segmental isotope labeling methods for the NMR study of multidomain or large proteins: application to the RRMs of Npl3p and hnRNP L.	J. Mol. Biol.	Skrisovska, L. et al.
2011	Overview of DNA Sequencing Strategies	Curr.Protoc.Mol.Biol.	Shendure, J.A., Porreca, G.J., Church, G.M., Gardner, A.F.Hendrickson, C.L., Kieleczawa, J.and Slatko, B.E.
2011	"First Generation" automated DNA sequencing technology	Curr. Prot. Mol. Biol.	Slatko, B.E., et al.
2011	Recombination in Wolbachia endosymbionts of filarial nematodies?	Appl.Environ.Microbiol.	Foster, J., Slatko, B., Bandi, C.and Kumar, S.
1999	Alternative splicing creates sex-specific transcripts and truncated forms of the furin protease in the parasite Dirofilaria immitis.	Gene	Jin, J., Poole, C.B., Slatko, B.E.and McReynolds, L.A.
1999	Wolbachia genomes and the many faces of symbiosis.	Parasitology Today	Bandi, C., Slatko, B.and O'Neill, S.L.
2015	Overview of Target Enrichment Strategies.	current Protocols in Molecular Biology	Kozarewa, I., Armisen, J., Gardner, A.F., Slatko, B.E. and Hendrickson, C.L.
2015	Adapting capillary gel electrophoresis as a senisitive, high-throughput method to accelerate characterization of nucleic acid metabolic enzymes	Nucleic Acids Res	Greenough, L., Schermerhorn K.M., Mazzola, L., Bybee, J., Rivizzigno, D., Cantin, E., Slatko, B.E., Gardner, A.F.
2006	It Takes Two: Lessons From the First Nematode Wolbachia Genome Sequence.	Issues in Infectious Disease	Pfarr, K., J.Foster and B Slatko
2016	Characterization of innate immunity genes in the parasitic nematode Brugia malayi	Symbiosis	Libro, S., Slatko, B.E. and Foster, J.M.
2016	Adapting capillary gel electrophoresis as a sensitive, high-throughput method to accelerate characterization of nucleic acid metabolic enzymes	Nucleic Acids Res.	Greenough, L., Schermerhorn, K.M., Mazzola, L., Bybee, J., Rivizzigno, D., Cantin, E., Slatko, B.E., Gardner, A.F.
2014	Wolbachia endosymbionts and human disease control	Mol. Biochem. Parasitol.	Slatko, B. E., Luck, A. N., Dobson, S. L. and Foster, J. M.
2014	Science for the suffering	Scientific American World View	Slatko, B.
1996	The XmnI Restriction-Modification System - Cloning, Expression, Sequence Organization And Similarity Between The R And M-Gene.	Gene	Nwankwo, D.O., Lynch, J.J., Moran, L.S., Fomenkov, A., and Slatko, B.E.
1996	Thermal cycle dideoxy DNA sequencing	Methods Mol.Biol.	Slatko, B.
1994	DNA sequencing	Curr.Protoc.Mol.Biol.	Slatko, B., Heinrich, P., Nixon, B.T., Eckert, R.L., Albright, L., and Ausubel, F.
1994	Thermal cycle Dideoxy DNA Sequencing.	Methods Mol.Biol.	Slatko, B.E.
1990	Nucleotide sequence of the phage l gt11 SacI-KpnI lacZ region.	Gene	Moran, L.S., Maina, C.V., Poole, C.B., and Slatko, B.E.
1997	Cloning and characterization of the BglII restriction-modification system reveals a possible evolutionary footprint.	Gene	Anton, B.P., Heiter, D.F., Benner, J.S., Hess, E.J., Greenough, L., Moran, L.S., Slatko, B.E., and Brooks, J.E.
2012	Metagenome Projects (To be published as part of a proceedings volume based upon a presentation as presented at the VI Congreso Nicaraguense de Biotecnologia.)		Slatko, B.
2007	On the taxonomic status of the intracellular bacterium Wolbachia pipientis: should this species name include the intracellular bacteria of filarial nematodes?	Int.J.Syst.Evol.Microbiol.	Pfarr, K., Foster, J., Slatko B., Hoerauf, A.and Eisen, J.A.
2007	It Takes Two: Lessons From the First Nematode Wolbachia Genome Sequence.	Wolbachia, A Bug's Life	Pfarr, K., Foster, J.and Slatko, B.
2007	Diversifying selection and host adaptation in two endosymbiont genomes.	BMC Evolutionary Biology	Brownlie, J.C., Adamski, M., Slatko, B.and McGraw, E.A.
2008	The symbiotic relationship between filarial parasitic nematodes and their wolbachia endosymbionts - a resource for a new generation of control measures.	Symbiosis	Ghedin, E., Daehnel, K., Foster, J., Slatko, B.and Lustigman S.
2017	Removing the needle from the haystack: Enrichment of Wolbachia endosymbiont transcripts from host rematode RNA by Cappable-seqTM	PLoS One	Luck, A.N., Slatko, B.E., Foster, J.M.
2017	Targeted enrichment and sequencing of recent endosymbiont-host lateral gene transfers	Sci Rep.	Dunning Hotopp, J.C., Slatko, B.E., Foster, J.M.
2009	Bioorthogonal Chemistry: Fishing for Selectivity in a Sea of Functionality	Angew. Chem. Int. Ed.	Sletten E. and Bertozzi C.
2001	Nuclear receptors in nematodes: themes and variations.	Trends in Genetics	Sluder, A.E.and Maina, C.V.
2004	Expression and function of conserved nuclear receptor genes in Caenorhabditis elegans.	Dev.Biol.	Gissendanner, C.R., Crossgrove, K., Kraus, K.A., Maina, C.V.and Sluder, A.E.
2011	Tissue specific distribution and dynamic changes of 5-hydroxymethylcytosine in mammalian genome	J. Biol. Chem.	Kinney, S.M. et al.
2006	Direct interaction between DNMT1 and G9a coordinates DNA and histone methylation during replication.	Genes & Devel.	Esteve, P.O., Chin, H.G., Smallwood, A., Feehery, G.R., Gangisette, O., Karpf, A.R., Carey, M.F.and Pradhan, S.
2007	Functional cooperation between HP1 and DNMT1 mediates gene silencing.	Genes & Devel.	Smallwood, A., Esteve, P.O., Pradhan, S.and Carey, M.
1998	Does Bcg1, a Unique Restriction Endonuclease, Require Two Recognition Sites for Cleavage?	J Biol.Chem	Kong, H., and Smith, C.L.
2016	Emerging pathogens of gilthead seabream: characterisation and genomic analysis of novel intracellular β-proteobacteria.	ISME J.	Seth-Smith, M.B.P. et al.
1997	Substrate DNA and cofactor regulate the activities of a multi-functional restriction-modification enzyme, Bcgl.	Nucl.Acids Res.	Kong, H., and Smith, C.L.
2011	Heterologous expression of a thermophilic esterase in Kluyveromyces yeasts	Appl. Microbiol. Biotechnol.	Rocha S.N., et al.
1995	LITMUS: Multipurpose cloning vectors with a novel system for bidirectional in vitro transcription.	BioTechniques	Evans, P.D., Cook, S.N., Riggs, P.D., and Noren, C.J.
2010	Heterologous expression of glucose oxidase in the yeastKluyveromyces marxianus	Microb. Cell Fact.	Rocha, S.N., et al.
1991	BfaI, a new MaeI isoschizomer from Bacteroides fragilis, recognizes the sequence 5' C^TAG 3'.	Nucl.Acids Res.	Reinecke, S.N., and Morgan, R.D.
1995	Purification and characterization of C.BamHI, a regulator of the BamHI restriction-modification system.	Gene	Sohail, A., Ives, C.L., and Brooks, J.E.
1995	The regulatory C proteins from different restriction-modification systems can cross-complement.	J.Bacteriol.	Ives, C.L., Sohail, A., and Brooks, J.E.
2009	Identification of two active functional domains of human adenylate kinase 5	FEBS Lett.	Solaroli, N., Panayiotou, C., Johansson, M., and Karlsson, A.
2009	The apearance of pyrrolysine in tRNAHis guanylyltransferase by neutral evolution.	Proc.Natl.Acad.Sci.USA	Heinemann, I.U., O'donoghue, P., Madinger, C., Benner, J., Randau, L., Noren, C.J.and Soll, D.
1998	Mu-Opioid Receptor Activates Signaling Pathways Implicated In Cell Survival And Translational Control.	J.Biol.Chem.	Polakiewicz, R.D., Schieferl, S.M., Gingras, A-C., Sonenberg, N.and Comb, M.J.
2014	Enhanced gene disruption by programmable nucleases delivered by a minicircle vector.	Gene Ther	A-Bk Dad, S Ramakrishna, M Song, H Kim	Genome Editing
2015	Population genomic evidence for adaptive differentiation in Baltic Sea three-spined sticklebacks.	BMCBiol.	Guo B, DeFaveri J, Sotelo G, Nair A, Merilä J.
2008	Intrabodies binding the proline-rich domains of mutant huntingtin increase its turnover and reduce neurotoxicity	J. Neurosci.	Southwell, A.L. et al.
2002	Protein Splicing of the Deinococcus radiodurans Strain R1 Snf2 Intein.	J.Bacteriol.	Southworth, M.W.and Perler, F.B.
2002	Inteins in microbial genomes: distribution, mechanism and function.	Scientific World Journal 2	Southworth, M.W.and Perler, F.B.
2002	The mechanism of protein splicing: variations on a theme.	Peptides: Proceedings of the Twnety-Seventh European Peptide Symposium	Perler, F.B., Chen, L.and Southworth, M.W.
2011	Branched Intermediate Formation is the Slowest Step in th Protein Splicing Reaction of the Ala1 KbA Intein from Methanococcus jannaschii		Saleh, L., Southworth, M.W., Considine, N., O'Neill, C., Benner, J., Bollinger, J.M. and Perler, F.B.
2000	An alternative protein splicing mechanism for inteins lacking an N-terminal nucleophile.	EMBO J.	Southworth, M.W., Benner, J.and Perler, F.B.
2004	A bacteriophage-based genetic system for selection of non-splicing inteins.	Appl.Environ.Microbiol.	Cann, I.K.O., Amaya, K.R., Southworth, M.W.and Perler, F.B.
1996	Gene cloning and production of active recombinant Brugia Malayi microfilarial chintinase.	Gene	Southworth, M.W., Fuhrman, J.A., Robbins, P.W., Beauregard, K., and Perler, F.B.
1994	Expression of an Onchocerca volvulus Ov33 homolog in Dirofilaria immitis: potential in immunodiagnosis of heartworm infection.	Parasite Immunol.	Mejia, S.J., Knenfou, C., Southworth, M.W., Perler, F.B.and Carlow, C.K.
1999	Regulation of 4E-BP1 phosphorylation: a novel two-step mechanism.	Genes & Devel.	Gingras, A-C., Gygi, S.P., Raught, B., Polakiewicz, R.D., Abraham, R.T., Hoekstra, M.F., Aebersold, R.and Sonenberg, N.
2015	Islet Endothelial Cells Induce Glycosylation and Increase Cell-surface Expression of Integrin β1 in β Cells	Mol Biol Cell	Spelios MG., Olsen JA., Kenna LA., Akirav EM.
1987	A Developmentally regulated surface epitope expressed by the infective larva of Brugia malayi which is rapidly lost after infection.	Molecular Paradigms for Eradicating Helmenthic Parasites	Carlow, C.K.S., Perrone, J., Spielman, A., and Philipp, M.A.
2016	Metabolic Incorporation of Azide Functionality into Cellular RNA.	Chembiochem	Nainar, S., Beasley, S., Fazio, M., Kubota, M., Dai, N., Correa, I.R. Jr. and Spitale, R.C.
2011	Regulation of expression and activity of DNA (cytosine-5) methyltransferases in mammalian cells	Prog Mol Biol Transl Sci.	Kinney, S.R. and Pradhan, S.
1999	Protein-Modulated DNA Electron Transfer.	J.Am.Chem.Soc.	Rajski, S.R., Kumar, S., Roberts, R.J.and Barton, J.K.
2013	Ten eleven translocation enzymes and 5-hydroxymethylation in mammalian development and cancer	Adv Exp Med Biol	Kinney, S.R. and Pradhan, S.
2010	In vivo oxidative protein folding can be facilitated by oxidation-reduction cycling.	Mol.Microbiol.	Shouldice, S.R., Cho, S.H., Boyd, D., Heras, B., Eser, M., Beckwith, J., Riggs, P., Martin, J.L.and Berkmen, M.
2005	Novel carboxylated N-glycans contain oligosaccharide-linked glutamic acid	Biochem. Biophys. Res. Commun.	Srikrishna, G., Brive, L., Freeze, H.H.
2010	Organelle-targetable fluorescent probes for imaging hydrogen peroxide in living cells via SNAP-tag protein labeling	J. Am. Chem. Soc.	Srikun, D. et al.
2007	Single M13 bacteriophage tethering and stretching.	Proc.Natl.Acad.Sci.USA	Khalil, A.S., Ferrer, J.M., Brau, r.R., Kottmann, S.T., Noren, C.J., Lang, M.J.and Belcher, A.M.
2014	Intranasal mRNA nanoparticle vaccination induces prophylactic and therapeutic anti-tumor immunity	Sci Rep	Phua KK, Staats HF, Leong KW, Nair SK
2005	Analysis and function of prototype foamy virus envelope N glycosylation	J. Virol.	Lüftenegger, D., Picard-Maureau, M., Stanke, N., Rethwilm, A., Lindemann, D.
2007	A multinuclear copper(I) cluster forms the dimerization interface in copper-loaded human copper chaperone for superoxide dismutase	Biochem.	Stasser, J. P., et. al.
2010	Biodiversity assessment: State-of-the-art techniques in phylogenomics and species identification	Am. J. Bot.	Steele, P.R and Pires, J.C.
2014	Objective: biochemical function	Front Genet	Anton BP, Kasif S, Roberts RJ, Steffen M
2017	Evaluating computatonal gene ontology annotations	Methods Mol. Biol.	Skunca, N., Roberts, R.J., Steffen, M.
2014	Functional characterization improves associations between rare non-synonymous variants in CHRNB4 and smoking behavior	PLoS One	Haller G, Li P, Esch C, Hsu S, Goate AM, Steinbach JH	Glycobiology
2014	The ambrosia symbiosis is specific in some species and promiscuous in others: evidence from community pyrosequencing.	ISME J	Martin Kostovcik, Craig C Bateman, Miroslav Kolarik, Lukasz L Stelinski, Bjarte H Jordal, Jiri Hulcr	High-Fidelity PCR
2007	Cellular trafficking of phospholamban and formation of functional sarcoplasmic reticulum during myocyte differentiation	Am. J. Physiol. Cell Physiol.	Stenoien D. L. et al.
2007	In vivo translation and stability of trans-spliced mRNAs in nematode embryos.	Mol. Biochem. Parasitol.	Cheng, G., Cohen, L., Mikhli, C, Jankowska-Anyszka, M., Stepinski, J., Darzynkiewicz, E. and Davis, R.E
2007	In vivo translation and stability of trans-spliced mRNAs in nematode embryos	Mol. Biochem. Parasitol.	Cheng, G., Cohen, L., Mikhli, C., Jankowska-Anyszka, M., Stepinski, J., Darzynkiewicz, E. and Davis, R.E.
2012	Nematode-Bacterium Symbioses - Cooperation and Conflict Revealed in the 'Omics' Age	Biol. Bulletin	Murfin, K., Dillman, A., Foster, J., Bulgheresi, S., Slatko, B., Sternberg, P. and Goodrich-Blair, H.
2000	A simple in vitro Tn7-based transposition system with low target site selectivity for genome and gene analysis.	Nucl.Acids Res.	Biery, M.C., Stewart, F.J., Stellwagen, A.E., Raleigh, E.A.and Craig, N.L.
1998	Dependence of McrBC Cleavage on Distance Between Recognition Elements.	Biol.Chem.	Stewart, F.J.and Raleigh, E.A.
2015	Probing the Run-On Oligomer of Activated SgrAI Bound to DNA	PLoS One	Shah, S., Sanchez, J., Stewart, A., et al.	Cloning & Synthetic Biology,DNA Preparation,Restriction Enzyme Digestion,Restriction Enzyme Digestion
2000	Functional analysis of putative restriction-modification system genes in the Helicobacter pylori J99 genome.	Nucl.Acids Res.	Kong, H., Lin, L.F., Porter, N., Stickel, S.Byrd, D., Posfai, J.and Roberts R.J.
1995	Regulation of sCD4-183 gene expression from phage-T7-based vectors in Escherichia coli.	Gene	Kelley, K.C., Huestis, K.J., Austen, D.A., Sanderson, C.T., Donoghue, M.A., Stickel, S.., Kawasaki, E.S., and Osburne, M.S.
2010	Sequence-specific cleavage of RNA by Type II restriction enzymes.	Nucl.Acids.Res.	Murray, I.A., Stickel, S.K.and Roberts, R.J.
2010	Activation of DNA Cleavage by Oligomerization of DNA Bound SgrAI.	Biochemistry	Park, C.K., Stiteler, A.P., Shah, S., Ghare, M.I., Bitinaite, J.and Horton, N.C.
2004	Recognition of DNA substrates by T4 polynucleotide kinase.	Nucl.Acids Res.	Eastberg, J., Pelletier, J.and Stoddard, B.
1992	Brugia malayi: patterns of expression of surface-associated antigens.	Exp.Parasitol.	Storey, N.and Philipp, M.
1990	Anti-idiotypic antibodies function as a surrogate surface epitope of Brugia malayi infective larvae.	Acta Trop.	Carlow, C.K.S., Busto, P., Storey, N., and Philipp, M.
1987	A unique type II restriction endonuclease from Acinetobacter lwoffi N.	Nucl.Acids Res.	Morgan, R.D., Dalton, M., and Stote, R.
2015	Depletion of CG-Specific Methylation in Mycoplasma hyorhinis Genomic DNA after Host Cell Invasion	PLoS One	Chernov AV., Reyes L., Peterson S., Strongin AY.	Epigenetics,Bisulfite Conversion
2011	5-Hydroxymethylcytosine is associated with enhancers and gene bodies in human embryonic stem cells	Gen. Biol.	Stroud, H., et al.
2015	Phylogeny and differentiation of reptilian and amphibian ranaviruses detected in europe	PLoS One	Stöhr AC, López-Bueno A, Blahak S, Caeiro MF, Rosa GM, Alves de Matos AP, Martel A, Alejo A, Marschang RE
2013	The complex methylome of the human gastric pathogen Helicobacter pylori	Nucleic Acids Research	Juliane Krebes, Richard D. Morgan, Boyke Bunk, Cathrin Spröer, Khai Luong, Raphael Parusel, Brian P. Anton, Christoph König, Christine Josenhans, Jörg Overmann, Richard J. Roberts, Jonas Korlach, Sebastian Suerbaum
2014	The complex methylome of the human gastric pathogen Helicobacter pylori	Nucleic Acids Res	Krebes J, Morgan RD, Bunk B, Spröer C, Luong K, Parusel R, Anton BP, König C, Josenhans C, Overmann J, Roberts RJ, Korlach J, Suerbaum S
2007	Synthesis of Polyester by Means of Genetic Code Reprogramming	Chem. Biol.	Ohta, A., Murakami, H., Higashimura, E., and Suga, H.
2010	Fluorescent labeling of COS-7 expressing SNAP-tag fusion proteins for live cell imaging	J.Vis Exp	Provost, C.R. and Sun, L.
2007	Design, preparation and use of ligated phosphoproteins: A novel approach to study protein phosphatases by dot blot array, ELISA and Western blot assays	Methods	Sun, L., et al.
2008	Enzyme catalyzed site-specific protein labeling and cell imaging with quantum dots	Chem. Comm.	Sunbul M. et al.
1998	Evaluation of the ASSURE/FH Antibody Assay for the Detection of Feline Heartworm Infection.	Proc.Amer.Heartworm Symp.	Bestul, K.J., McCall, J.W., Supakorndej, N., Ma, D., Carlow, C.K.S.
2009	Prion protein glycosylation is not required for strain-specific neurotropism	J Virol.	Piro, J.R., Harris, B.T., Nishina, K., Soto, C., Morales, R., Rees, J.R., Supattapone, S.
2015	Simultaneous generation of many RNA-seq libraries in a single reaction	Nat Methods	Shishkin AA, Giannoukos G, Kucukural A, Ciulla D, Busby M, Surka C, Chen J, Bhattacharyya RP, Rudy RF, Patel MM, Novod N, Hung DT, Gnirke A, Garber M, Guttman M, Livny J
1993	McrBC, a novel multisubunit GTP-dependent restriction endonuclease.	J.Cell Biochem.Suppl.	Raleigh, E., Dila, D., Sutherland, E., Kelleher, J., Moran, L., Slatko, B., and Briggs, P.
1992	McrBC: a multisubunit GTP-dependent restriction endonuclease.	J.Mol.Biol.	Sutherland, E., Coe, L., and Raleigh, E.A.
1990	Genetic and sequence organization of the mcrBC locus of Escherichia coli K-12.	J.Bacteriol.	Dila, D., Sutherland, E., Moran, L., Slatko, B., and Raleigh, E.A.
2006	A highly sensitive protein-protein interaction assay based onGaussia luciferase	Nat. Methods	Remy, I. and Michnick, S.W.
2006	A highly sensitive protein-protein interaction assay based onGaussia luciferase	Nat. Methods	Remy, I. and Michnick, S.W.
2006	A highly sensitive protein-protein interaction assay based on Gaussia luciferase.	Nat. Methods	Remy. I. and Michnick, S.W.
2014	Strand Invasion Based Amplification (SIBA®): A Novel Isothermal DNA Amplification Technology Demonstrating High Specificity and Sensitivity for a Single Molecule of Target Analyte	PLoS One	Hoser MJ, Mansukoski HK, Morrical SW, Eboigbodin KE
2008	Inducing efficient cross-priming using antigen-coated yeast particles	J. Immunother.	Howland S.W. et al.
2008	Physical and computational analysis of the yeast Kluyveromyces lactissecreted proteome	Proteomics	Swaim, C.L., et al.
2014	SpeedyGenes: an improved gene synthesis method for the efficient production of error-corrected, synthetic protein libraries for directed evolution	Protein Eng Des Sel	Currin A, Swainston N, Day PJ, Kell DB
2007	Cell-free metabolic engineering promotes high-level production of bioactive Gaussia princeps luciferase	J. Biotechnol.	Goerke, A.R. and Loening, A.M., Gambhir, S.S. and Swartz, J.R.
2015	Contrasting genetic structure between mitochondrial and nuclear markers in the dengue fever mosquito from Rio de Janeiro: implications for vector control.	Evol Appl.	Rašić G, Schama R, Powell R, Maciel-de Freitas R, Endersby-Harshman NM, Filipović I, Sylvestre G, Máspero RC, Hoffmann AA.
1987	Nucleotide sequence of the DdeI restriction-modification system and characterization of the methylase protein.	Nucl.Acids Res.	Sznyter, L.A., Slatko, B., Moran, L., O'Donnell, K.H., and Brooks, J.E.
1988	The characterization and cloning of the EagI restriction-modification system.	Gene	Sznyter, L.A., and Brooks, J.E.
1988	The characterization and cloning of the NotI restriction-modification system	Heredity	Sznyter, L.A., Brooks. J.E.
2004	Cloning of the thermostable alpha-amylase gene from Pyrococcus woesei in Escherichia coli: isolation and some properties of the enzyme	Mol. Biotechnol.	Grzybowska, B., Szweda, P. and Synowiecki, J.
1999	Purification and crystallization of precursors and autoprocessed enzymes of Flavobacterium glycosylasparaginase: an N-terminal nucleophile hydrolase.	Acta Crystallogr.D.Biol.Crystallogr.	Cui, T., Liao, P.H., Guan, C.and Guo, H.C.
2004	Synthesis of fluorescently labeled mono- and diprenylated Rab7 GTPase	J. Am. Chem. Soc.	Durek, T., et al.
2004	In vitro semisynthesis and applications of C-terminally modified Rab proteins	Methods Mol Biol.	Durek T., Goody R.S and Alexandrov K.
2006	Adding value to fusion proteins through covalent labeling	Curr. Opin. Biotechn.	Gronemeyer T. et al.
2006	Directed evolution of O6-alkylguanine-DNA alkyltransferase for applications in protein labeling	Prot. Eng. Des. Sel.	Gronemeyer T. et al.
2016	Illuminating uveitis: metagenomic deep sequencing identifies common and rare pathogens.	Genome Medicine	Doan, T. et al.
2016	RAD mapping reveals an evolving polymorphic and fuzzy boundary of a plant pseudoautosomal region	Mol Ecol.	Qiu S, Bergero R, Guirao-Rico S, Campos JL, Cezard T, Gharbi K, Charlesworth D.
2016	RAD mapping reveals an evolving, polymorphic and fuzzy boundary of a plant pseudoautosomal region.	Mol Ecol.	Qiu S, Bergero R, Guirao-Rico S, Campos JL, Cezard T, Gharbi K, Charlesworth D.
2014	A Modular Plasmid Assembly Kit for Multigene Expression, Gene Silencing and Silencing Rescue in Plants	PLoS One	Binder A, Lambert J, Morbitzer R, Popp C, Ott T, Lahaye T, Parniske M	DNA Assembly and Cloning,Golden Gate Assembly
2014	A semi-synthetic organism with an expanded genetic alphabet	Nature	Malyshev, D.A., Dhami, K., Lavergne, T., chen, T., Dai, N., Foster, J.M., Correa Jr., I.R. and Romesberg, F.E.
2014	The N-terminal domain modulates α-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA) receptor desensitization	J Biol Chem	Möykkynen T, Coleman SK, Semenov A, Keinänen K	Glycobiology
1995	Structure of BamHI endonuclease bound to DNA: partial folding and unfolding on DNA binding.	Science	Newman, M., Strzelecka, T., Dorner, L.F., Schildkraut, I., and Aggarwal, A.K.
2010	The tetrahymena argonaute-binding protein Giw1p directs a mature argonaute-siRNA complex to the nucleus	Cell	Noto, T., Kurth, H., Kataoka, K., Aronica, L., DeSouza, L., Siu, K., Pearlman, R., Gorovsky, M. and Mochizuki, K.
2010	BspRI restriction endonuclease: cloning, expression in E.coli and sequential cleavage mechanism.	Nucleic Acids Research Advance Access	Rasko, T., Der, A., Klement, E., Slaska-Kiss, K., Posfai, E., Medzihradsky, K.F., Marshak, D.R., Roberts, R.J., Kiss, A.
1992	CircumVent» Thermal Cycle Sequencing and Alternative Manual and Automated DNA Sequencing Protocols Using the Highly Thermostable VentR» (exo-) DNA Polymerase.	BioTechniques	Sears, L.E., Moran, L.S., Kissinger, C., Creasey, T., Perry-O'Keefe, H., Roskey, M., Sutherland, E., and Slatko, B.E.
1994	Crystallization and Preliminary X-ray Analysis of Restriction Endonuclease BamHI-DNA Complex.	J.Mol.Biol.	Strzelecka, T., Newman, M., Dorner, L.F., Knott, R., Schildkraut, I., and Aggarwal, A.K.
1994	Structure of restriction endonuclease BamHI phased at 1.95 A resolution by MAD analysis.	Structure	Newman, M., Strzelecka, T., Dorner, L.F., Schildkraut, I., and Aggarwal, A.K.
1994	Structure of restriction endonuclease BamHI and its relationship to EcoRI.	Nature	Newman, M., Strzelecka, T., Dorner, L.F., Schildkraut, I., and Aggarwal, A.K.
1990	Altered specificity of restriction endonucleases HinfI.	Nucl.Acids Res.	Petronzio, T., and Schildkraut, I.
1990	Structural studies opf the BamHI restriction enzyme	Biophys. J.	Strzelecka, T., Dorner, L., Schildkraut, I., Aggarawal, A.
1989	Site-directed mutagenesis of the EcoRV methylase for the study of the functional role of the conserved sequences in N6-adenine methylases	J. Cell Biochem	Barshevsky,T. and Benner J.S.
2008	Spectral resolved gene technology for multiplexed bioluminescence and high content screening	Anal. Chem.	Michelini, E., Cevenini, L., Mezzanote, L., Ablamsky, D., Southworth, T., Branchini, B. and Roda, A.
2008	An interval partitioning algorithm for constraint satisfaction problems, IJMIC special issue on "Nonlinear Optimization with Engineering and Scientific Applications.	IJMIC special issue on "Nonlinear Optimization with Engineering and Scientific Applications	Pedamallu, C.S., Kumar, A., Csendes, T., and Posfai, J.
2017	A practical guide to the oral microbiome and its relation to health and disease		Krishnan, K., Chen, T., Paster, B.J.
2009	Optimization of 454 sequencing library preparation from small amounts of DNA permits sequence determination of both DNA strands	Biotechniques	Maricic, T. and Pääbo, S.
2009	A genetically encoded bioluminescent indicator for the sodium channel activity in living cells	J. Am. Chem. Soc.	Kaihara, A., Sunami, A., Kurokawa, J. and Furukawa, T.
2009	A genetically encoded bioluminescent indicator for the sodium channel activity in living cells	J. Am. Chem. Soc.	Kaihara, A., Sunami, A., Kurokawa, J., Furukawa, T.
2000	Methyl-specific DNA Binding by McrBC, a Modification-dependent Restriction Enzyme.	J.Mol.Biol.	Stewart, F.J., Panne, D., Bickle, T.A.and Raleigh, E.A.
2001	Herbicide resistance from a divided EPSPS protein: the split Synechocystis DnaE intein as an in vivo affinity domain.	Gene	Chen, L., Pradhan, S.and Evans, T.C.Jr.
2003	Zinc Ion Effects on Individual Ssp DnaE Intein Splicing Steps: Regulating Pathway Progression.	Biochemistry	Nichols, N.M., Benner, J.S., Martin, D.D.and Evans, T.C.Jr.
2004	Mutational Analysis of Protein Splicing, Cleavage, and Self-Association Reactions Mediated by the Naturally Split Ssp DnaE Intein.	Biochemistry	Nichols, N.M.and Evans, T.C.Jr.
2005	Sequence Specificity and Role of Proximal Amino Acids of the Histone H3 Tail on Catalysis of Murine G9a Lysine 9 Histone H3 Methyltransferase.	Biochemistry	Chin, H.G., Pradhan, M., Esteve, P., Patnaik, D., Evans, T.C.Jr.and Pradhan, S.
2001	Protein splicing and its aplications.	Genet.Eng.(NY)	Giriat, I., Muir, T.W.and Perler, F.B.
1998	McrBs, a modulator peptide for McrBC activity.	EMBO J.	Panne, D., Raleigh E.A., Bickle, T.A.
1999	The McrBC Endonuclease Translocates DNA in a Reaction Dependent on GTP Hydrolysis.	J.Mol.Biol.	Panne, D., Raleigh E.A.and Bickle, T.A.
2013	Characterization of DNA methyltransferase specificities using single-molecule, real-time DNA sequencing	Nucleic Acids Research	Clark, T.A., Murray, I.A., Morgan, R.D., Kislyuk, A.O., Spittle, K.E., Boitano, M., Fomenkov, A., Roberts, R.J. and Korlach, J.
2014	Identification and Biosynthesis of a Novel Xanthomonadin-Dialkylresorcinol-Hybrid from Azoarcus sp. BH72	PLoS One	Schöner TA, Fuchs SW, Reinhold-Hurek B, Bode HB	Gibson Assembly®
2012	Characterization of DNA methyltransferase specificities using single-molecule, real-time DNA sequencing	Nucl. Acids Res.	Clark, T.A., Murray, I.A., Morgan, R.D., Kislyuk, A.O., Spittle, K.E., Boitano, M., Fomenkov, A., Roberts, R.J. and Korlach, J.
2009	Characterization of N-linked glycosylation on recombinant glycoproteins produced in Pichia pastoris using ESI-MS and MALDI-TOF	Methods Mol. Biol.	Gong, B., Cukan, M., Fisher, R., Li, H., Stadheim, T.A., Gerngross, T.	Glycobiology
2011	DNA Ligases	Curr Protoc Mol Biol	Lohman, G.J., Tabor, S., Nichols, N.M.
2008	RNA ligases.	Curr.Protoc.Mol.Biol.	Nichols, N.M., Tabor, S.and McReynolds, L.A.
1988	An Escherichia coli vector to express and purify foreign proteins by fusion to and separation from maltose-binding protein.	Gene	Maina, C.V., Riggs, P.D., Grandea, A.G.I., Slatko, B.E., Moran, L.S., Tagliamonte, J.A., McReynolds, L.A., and Guan, C.D.
2011	Overexpression and purification of U24 from human herpesvirus type-6 in E. coli: unconvential use of oxidizing environments with a maltose binding protein-hexahistidine dual tag to enhance membrane protein yield	Microbial Cell Factories	Tait, A.R. and Straus, S.K.
2008	Stable isotope labeling of protein byKluyveromyces lactis for NMR study	J. Biomol NMR.	Sugiki, T. Shimada, I. and Takahashi H.
2004	Site-specific conjugation of oligonucleotides to the C-terminus of recombinant protein by expressed protein ligation	Bioorg. Med. Chem. Lett.	Takeda, S.,et al.
2009	Interleukin-33 is biologically active independently of Caspase-1 cleavage	J. Biol. Chem.	Talabot-Ayer, D., Lamacchia, C., Gabay, C., and Palmer, G.
1997	Baculovirus-Mediated Expression and Characterization of the Full-Length Murine DNA Methyltransferase.	Nuc.Acids Res.	Pradhan, S., Talbot, D., Sha, M., Benner, J., Hornstra, L., Li, E., Jaenisch, R.and Roberts, R.J.
2016	Distributive processing by the Iron(II)/α-Ketogluterate-dependent catalytic domains of the TET enzymes in consistent with epigenetic roles for oxidized 5-methylcytosine bases	J Am Chem Soc.	Tamanaha, E., Guan, S., Marks, K., Saleh, L.
2008	HP1-mediated silencing targets Pol II coactivator complexes.	Nat Struct Mol Biol.	Smallwood, A., Black, J.C., Tanese, N., Pradhan, S.and Carey, M.
2012	Engineering Escherichia coli for soluble expression and single step purification of active human lysozyme	Journal of Biotechnology	Lamppa, J.W., Tanyos, S.A., and Griswold, K.E.
2003	Revised Escherichia coli selenocysteine insertion requirements determined by in vivo screening of combinatorial libraries of SECIS variants.	Nucl.Acids Res.	Sandman, K.E., Tardiff, D.F., Neely, L.A.and Noren, C.J.
2011	Uptake of radiolabeled GlcNAc into Saccharomyces cerevisiae via native hexose transporters and its in vivo incorporation into GPI precursors in cells expressing heterologous GlcNAc kinase.	REMS Yeast Res	Scarcelli, J.J., Colussi, P.A., Fabre, A.L., Boles, E., Orlean, P.and Taron, C.H.
2004	Deficiencies in the essential Smp3 mannosyltransferase block glycosylphosphatidylinositol assembly and lead to defects in growth and cell wall biogenesis in Candida albicans.	Microbiology	Grimme, S.J., Colussi, P.A., Taron,C.H.and Orlean, P.
2014	Complementation of essential yeast GPI mannosyltransferase mutations suggests a novel specificity for certain Trypanosoma and Plasmodium PigB proteins	PLoS One	Cortes, L.K., Scarcelli, J.J., Taron, C.H.
2005	Kluyveromyces lactis LAC4 Promoter Variants That Lack Function in Bacteria but Retain Full Function in K.lactis.	Appl.Environ.Microbiol.	Colussi, P.A.and Taron, C.H.
2005	Kluyveromyces lactis LAC4 promoter variants that lack function in bacteria but retain full function in K. lactis	Appl. Environ. Microbiol.	Colussi, P.A. and Taron, C.H.
2005	Saccharomyces cerevisiae Ybr004c and its human homologue are required for addition of the second mannose during glycosylphosphatidylinositol precursor assembly.	FEBS Journal	Fabre, A-L, Orlean, P.and Taron, C.H.
2005	Characterization of a Nucleus-Encoded Chitinase from the Yeast Kluyveromyces lactis.	Appl.Environ.Microbiol.	Colussi, P.A., Specht, C.A.and Taron, C.H.
2005	Characterization of a nucleus-encoded chitinase from the yeast Kluyveromyces lactis	Appl. Environ. Microbiol.	Colussi, P.A., Specht, C.A. and Taron, C.H.
1995	A novel beta-galactosidase gene isolated from the bacterium Xanthomonas manihotis exhibits strong homology to several eukaryotic beta-galactosidases.	Glycobiology	Taron, C.H., Benner, J.S., Hornstra, L.J., and Guthrie, E.P.
2010	Constitutive secretion in Tetrahymena thermophila.	Eukaryot Cell	Madinger, C.L., collins, K., Fields, L.G., Taron, C.H.and Benner, J.S.
2012	Uptake of radiolabeled GIcNAc into Saccharomyces cerevisiae via native hexose transporters and its in vivo incorporation into GPI precursors in cells expressing heterologous GIcNAc kinase	FEMS Yeast Res	Scarcelli, J.J., Colussi, P.A., Fabre, A.L., Boles, E., Orlean, P., Taron, C.H.
2007	Acetamide Selection of Kluyveromyces lactis Cells Transformed with an Integrative Vector Leads to High Frequency Formation of Multicopy Strains.	Appl.Environ.Microbiol.	Read, J.D., Colussi, P.A., Ganatra, M.B.and Taron, C.H.
2007	Acetamide selection of Kluyveromyces lactis cells transformed with an integrative vector leads to high frequency formation of multicopy strains	Appl. Environ. Microbiol.	Read, J.D., Colussi, P.A., Ganatra, M.B. and Taron, C.H.
2008	Physical and computational analysis of the yeast Kluyveromyces lactis secreted proteome.	Proteomics	Swaim, C., Anton, B., Sharma, S., Taron, C.and Benner, J.
2008	The Wolbachia endosymbiont of Brugia malayi has an active phosphoglycerate mutase: a candidate target for anti-filarial therapies	Parasitol. Res.	Foster, J.M., Raverdy, S., Ganatra, M.B., Colussi, P.A., Taron, C.H. and Carlow, C.K.S.
2008	The Wolbachia endosymbiont of Brugia malayi has an active phosphoglycerate mutase: a candidate target for anti-filarial therapies.	Parasitol.Res.	Foster, J.M., Raverdy, S., Ganatra, M.B., Colussi, P.A., Taron, C.H.and Carlow, C.K.S.
2009	The Wolbachia endosymbiont of Brugia malayi has an active phosphoglycerate mutase: a candidate target for anti-filarial therapies.	Parasitol.Res.	Foster, J.M., Raverdy, S., Ganatra, M.B., Colussi, P.A., Taron, C.H.and Carlow, C.K.S.
2009	The effect of carbon source on the secretome of Kluyveromyces lactis.	Proteomics	Madinger, C.L., Sharma S.S., Anton, B.P., Fields, L.G., Cushing, M.L., Canovas, J., Taron, C.H., and Benner, J.S.
2009	The effect of carbon source on the secretome of Kluyveromyces lactis	Proteomics	Madinger, C.L., Sharma, S.S., Anton, B.P., Fields, L.G., Cushing, M.L., Canovas, J., Taron, C.H. and Benner, J.S.
2011	"The Molecular Biology, Immunology and chemotherapy of Wolbachia bacterial endosymbionts of filarial nematodes".	Parasitic Nematodes: Molecular Biology, Biochemistry & Immunology (Kennedy, M.and Harnett, W., eds.)	Foster, J.M., Hoerauf, A., Slatko, B.E.and Taylor, M.J.
2011	Activity, specificity and structure of I-Bth03051: a representative of a new homing endonuclease family		Taylor, G.K., Heiter, D.F., Pietrokovski, S. and Stoddard, B.L.
2013	The Molecular Biology, Immunology and Chemotherapy of Wolbachia Bacterial Endosymbionts of Filarial Nematodes	Parasitic Namatodes: Molecular Biology, Biochemistry, Immunology	Foster, J.M., Hoerauf, A., Slatko, B.E. and Taylor, M.J.
2016	Culture-independent genomic characterisation of Candidatus Chlamydia sanzinia, a novel uncultivated bacterium infecting snakes.	BMC Genomics	Taylor-Brown, A. et al.
2014	Analysis of hundreds of cis-regulatory landscapes at high resolution in a single, high-throughput experiment	Nat Genet	Hughes J.R., Roberts N., McGowan S., Hay D., Giannoulatou E., Lynch M., De Gobbi M., Taylor S., Gibbons R., Higgs D.R.	Epigenetics,DNA Methylation Analysis,Restriction Enzymes for Epigenetics
2014	Absense of Wolbachia endobacteria in the human parasitic nematode Dracunculus medinensis and two related Dracunculus species infecting wildlife	Parasit Vectors	Foster, J.M., Landmann, F., Ford, L., Johnston, K.L., Elsasser, S.C., Schulte-Hostedde, A.I., Taylor, M.J., Slatko, B.E.
2010	The Wolbachia endosymbiont as an anti-filarial nematode target.	Symbiosis	Slatko, B.E., Taylor, M.J.& Foster, J.M.
2012	Drugs and targets to perturb the symbiosis of Wolbachia and filarial nematodes	Parasitic Helminths: Targets, Screens, Drugs and Vaccines	Taylor, M.J., Ford, L, Ford, Hoerauf, A., Pfarr, K., Foster, J.M., Kumar, S. and Slatko, B.E.
2011	Engineering BL21(DE3) derivative strains to minimize Escherichia coli protein contamination after IMAC purification.	Appl. Environ. Microbiol.	Robichon, C., Luo, J., Causey, T.B., Benner, J.S. and Samuelson, J.C.
2011	Engineering BL21(DE3) derivative strains to minimize Escherichia coli protein contamination after IMAC purification.	Appl.Environ.Microbiol.	Robichon, C., Luo, J., Causey, T.B., Benner, J.S.and Samuelson, J.C.
1995	Identification of recombinant filarial proteins capable of inducing polyclonal and antigen-specific IgE and IgG4 antibodies.	J.Immunol.	Garraud, O., Nkenfou, C., Bradley, J.E., Perler, F.B., and Nutman, T.B.
1986	Biochemical and immunologic characterization of a major surface antigen of Dirofilaria immitis infective larvae.	J.Immunol.	Philipp, M., and Davis, T.B.
1991	Characterization of a recombinant clone of Wuchereria bancrofti with specificity for human lymphatic filarial parasites.	Mol.Biochem.Parasitol.	Raghavan, N., McReynolds, L.A., Maina, C.V., Feinstone, S.M., Jayaraman, K., Ottesen, E., and Nutman, T.B.
1994	The I-CeuI endonuclease: purification and potential role in the evolution of Chlamydomonas group I introns.	Eur. J. Biochem	Marshall, P., Davis, T.B., Lemieux,C.
1990	B CELL RESPONSES TO PARAMYOSIN.Isotypic Analysis and Epitope Mapping of Filarial Paramyosin in Patients with Onchocerciasis.	J.Immunol.	Steel, C., Limberger, R.J., McReynolds, L.A., Ottesen, E.A., and Nutman, T.B.
1990	The identification of an Onchocerca-specific recombinant antigen containing a T cell epitope.	J Immunol.	Colina, K.F., Perler, F.B., Matsumura, I., Meda, M., and Nutman, T.B.
1988	IMMUNITY IN FILARIASIS: Perspectives for Vaccine Development.	Ann.Rev.Microbiol.	Philipp, M., Davis , T.B., Storey, N., and Carlow, C.K.S.
1997	Induction of Parasite Antigen-Specific Antibody Responses in Unsensitized Human B Cells is Dependent on the Presence of Cytokines After T Cell Priming.	J.Immunol.	Garraud, O., Perler, F.B., Bradley, J.E., and Nutman, T.B.
2012	Disulfide-bonded protein expression in E. coli	Genetic Engineering & Biotechnology News	Samuelson, J.C., Causey, T.B., and Berkmen, M.
2012	Filarial and Wolbachia Genomics	Parasite Immunol.	Scott, A.L., Ghedin, E., Nutman, T.B., McReynolds, L.A., Poole, C.B., Slatko, B.E. and Foster, J.M.
2012	Filarial and Wolbachia genomics.	Parasite Immunol.	Scott, A.L., Ghedin, E., Nutman, T.B., McReynolds, L.A., Poole, C.B., Slatko, B.E.and Foster, J.M.(
2011	Kinetic characterization of single strand break ligation in duplex DNA by T4 DNA Ligase.	J Biol Chem.	Lohman, G.J.S., Chen, L.and Evans, T.C., Jr.
2015	A high-throughput assay for the comprehensive profiling of DNA ligase fidelity	Nucleic Acids Res	Lohman GJ, Bauer RJ, Nichols NM, Mazzola L, Bybee J, Rivizzigno D, Cantin E, Evans TC Jr.
2015	Transition in sexual system and sex chromosome evolution in the tadpole shrimp Triops cancriformis.	Heredity (Edinb).	Mathers TC, Hammond RL, Jenner RA, Hänfling B, Atkins J, Gómez A.
2015	Comparative Population Genomics of African Montane Forest Mammals Support Population Persistence across a Climatic Gradient and Quaternary Climatic Cycles.	PLoS One.	Demos TC, Kerbis Peterhans JC, Joseph TA, Robinson JD, Agwanda B, Hickerson MJ.
2016	The Inhibitory Effect of Non-Substrate and Substrate DNA on the Ligation and Self-Adenylylation Reactions Catalyzed by T4 DNA Ligase.	PLoS One	Bauer, R.J., Evans, T.C. Jr. and Lohman, G.J.
2016	A high-throughput assay for the comprehensive profiling of DNA ligase fidelity	Nucleic Acids Res.	Lohman, G.J., Bauer, R.J., Nichols, N.M., Mazzola, L., Bybee, J., Rivizzigno, D., Cantin, E., Evans, T.C., Jr.
2014	Loop-mediated isothermal amplification for detection of nucleic acids	Curr Protoc Mol Biol	Tanner NA, Evans TC Jr.	Isothermal Amplification
2010	A human PMS2 homologue from Aquifex aeolicus stimulates an ATP-dependent DNA helicase.	J Biol.Chem	Mauris, J.and Evans, T.C., Jr.
2008	DNA Repair Enzymes.	Curr.Protoc.Mol.Biol.	Evans, T.C., Jr.and Nichols, N.M.
2017	DNA damage is a pervasive cause of sequencing errors, directly confounding variant identification	Science	Chen, L., Liu, P., Evans, T.C., Jr., Ettwiller, L.M.
2014	The Serine-Threonine Protein Kinase PAK4 Is Dispensable in Zebrafish: Identification of a Morpholino-Generated Pseudophenotype	PLoS One	Law SH, Sargent TD	Gibson Assembly®
2010	Massively parallel sequencing of exons on the X chromosome identifies RBM10 as the gene that causes a syndromic form of cleft palate	Am. J. Hum. Genet.	Johnston, J.J., Teer, J.K., Cherukuri, P.F. et al
2005	Functional analysis of the N- and C-terminus of mammalian G9a histone H3 methyltransferase.	Nucl.Acids Res.	Esteve, P.O., Patnaik, D., Chin, H.G., Benner, J., Teitell, M.A.and Pradhan, S.
2008	Absence of Wolbachia endobacteria in the non-filariid nematodes Angiostrongylus cantonensis and A.costaricensis.	Parasites & Vectors	Foster, J.M., Kumar, S., Ford, L., Johnston, K.L., Ben, R., Graeff-Teixeira, C.and Taylor, M.J.
2014	PCR amplification of a triple-repeat genetic target directly from whole blood in 15 minutes as a proof-of-principle PCR study for direct sample analysis for a clinically relevant target	BMC Med Genet	Connelly CM1, Porter LR2, TerMaat JR
2014	Methyllysine reader plant homeodomain (PHD) finger protein 20-like 1 (PHF20L1) antagonizes DNA (cytosine-5) methyltransferase 1 (DNMT1) proteasomal degradation	J Biol Chem	Estève PO, Terragni J, Deepti K, Chin HG, Dai N, Espejo A, Corrêa IR Jr, Bedford MT, Pradhan S
2007	Sialic acid on herpes simplex virus type 1 envelope glycoproteins is required for efficient infection of cells	J. Virol.	Teuton, J.R., Brandt, C.R.
2015	Sul1 and Sul2 Sulfate Transceptors Signal to Protein Kinase A upon Exit of Sulfur Starvation.	J Biol Chem	Harish Nag Kankipati, Marta Rubio-Texeira, Dries Castermans, George Diallinas, Johan M Thevelein	High-Fidelity PCR
2012	Targeted genome enrichment for efficient purification of endosymbiont DNA from host DNA	Symbiosis	Geniez, S., Foster, J.M., Kumar, S., Moumen, B., Leproust, E., Hardy, O., Guadalupe, M., Thomas, S.J., Boone, B., Hendrickson, C., Bouchon, D., Greve, P and Slatko, B.E.
2014	Fusion of catalytically inactive Cas9 to FokI nuclease improves the specificity of genome modification	Nat Biotechnol	Guilinger JP, Thompson DB, Liu DR	Gibson Assembly®
2008	Septin stability and recycling during dynamic structural transitions in cell division and development	Current Biology	McMurray, M.A. and Thorner, J.
2011	Engineering a waste management enzyme to overcome cancer resistance to apoptosis: adding DNase1 to the anti-cancer toolbox	Cancer Gene Ther.	Rosner, K., Kasprzak, M.F., Horenstein, A.C., Thurston, H.L., Abrams, J., Kerwin, L.Y., Mehregan, D.A. and Mehregan, D.R.
2015	Structural and biochemical studies of a moderately thermophilic exonuclease I from Methylocaldum szegediense	PLoS One	Fei, L., Tian, S., Moysey, R., Misca, M., Barker, J.J., Smith, M.A., McEwan, P.A., Pilka, E.S., Crawley, L., Evans, T. and Sun, D.
2008	13C-sialic acid labeling of glycans on glycoproteins using ST6Gal-I	J. Am. Chem Soc.	Macnaughtan, M.A., Tian, F., Liu, S., Meng, L., Park, S., Azadi, P., Moremen, K.W., Prestegard, J.H.
2017	Mechanism and timing of Mcm2-7 ring closure during DNA replication origin licensing	Nat. Struct. Mol. Biol.	Ticau, S., Friedman, L.J., Champasa, K., Correa, I.R., Jr., Gelles, J., Bell, S.P.
2013	Segregation of Family A G Protein Coupled Receptor Protomers in the Plasma Membrane	Molecular Pharmacology	Anthony Gavalas, Tien-Hung Lan, Qiuju Liu, Ivan R. Corrêa, Jr., Jonathan A. Javitch, and Nevin A. Lambert
2006	Evaluation of two novel tag-based labeling technologies for site-specific modification of proteins	Int. J. Biol. Macromol.	Tirat A. et al.
2009	Protein conjugates of SH3-domain ligands and ATP- competitive inhibitors as bivalent inhibitors of protein kinases	ChemBioChem.	Tivari R. and Parang K.
2016	The Microbiome of Aseptically Collected Human Breast Tissue in Benign and Malignant Disease	Sci Rep.	Hieken, T.J. et al.
2012	Antiproliferative small-molecule inhibitors of transcription factor LSF reveal oncogene addiction to LSF in hepatocellular carcinoma	Proc. Natl. Acad. Sci. USA	Grant, T.J., et al.
2017	Rapid Time Scale Analysis of T4 DNA Ligase–DNA Binding.	Biochemistry	Bauer, R.J., Jurkiw, T.J., Evans, T.C. Jr. and Lohman, G.J.
2017	Defining the RNaseH2 enzyme-initiated ribonucleotide excision repair pathway in Archaea	J. Biol Chem.	Heider, M.R., Burkhart, B.W., Santangelo, T.J., Gardner, A.F.
2008	MmeI: a minimal Type II restriction-modification system that only modifies one DNA strand for host protection.	Nucl.Acids.Res.	Morgan, R.D., Bhatia, T.K., Lovasco, L.and Davis, T.B.
1989	A l gt11 cDNA recombinant that encodes Dirofilaria immitis paramyosin.	Mol.Biochem.Parasitol.	Grandea, A.G.I., Le, T.K.T., Asikin, N., Davis, T.B., Philipp, M., Cohen, C., and McReynolds, L.A.
2011	A Radically Different Mechanism for S-Adenosylmethionine-Dependent Methyltransferases.	Science Express	Grove, T.L., Benner, J.S., Radle, M.I., Ahlum, J.H., Landgraf, B.J., Krebs, C.and Booker, S.J.
2011	Selection of peptides targeting helix 31 of bacterial 16S ribosomal RNA by screening M13 phage-display libraries	Molecules	Lamichhane, T.N., Abeydeera, N.D., Duc, A.C., Cunningham, P.R. and Chow, C.S
2004	Intein-mediated purification of a recombinantly expressed peptide	Chem Commun (Camb)	Pezza, J.A., Allen, K.N. and Tolan, D.R.
2016	Global repositioning of transcription start sites in a plant-fermenting bacterium.	Nat Commun	Boutard, M., Ettwiller, L., Cerisy, T., Alberti, A., Labadie, K., Salanoubat, M., Schildkraut, I. and Tolonen, A.C.
2008	Organelle-specific zinc detection using zinpyr-labeled fusion proteins in live cells	J. Am. Chem. Soc.	Tomat, E. et al.
2008	The relative contribution of mannose salvage pathways to glycosylation in PMI-deficient mouse embryonic fibroblast cells	FEBS J.	Fujita, N., Tamura, A., Higashidani, A., Tonozuka, T., Freeze, H.H., Nishikawa, A.
2011	The Arthrobacter Species FB24 Arth_1007 (DnaB) Intein Is a Pseudogene.	PLoS ONE	Tori, K.and Perler, F.B.
2011	Expanding the definition of class 3 inteins and their proposed phage origin.	J.Bacteriol.	Tori, K.and Perler, F.B.
2013	Faster Protein Splicing with the Nostoc punctiforme DnaE Intein Using Non-native Extein Residues	J Biol Chem	Cheriyan, M., Pedamallu, C.S., Tori, K. and Perler, F.
2016	Sequential formation of two branched intermediates during protein splicing of class three inteins	Extremophiles	Tori, K. and Perler, F.
2010	The Deinococcus radiodurans Snf2 intein caught in the act: Detection of the Class 3 intein signature Block F.branched intermediate.	Protein Sci.	Brace, L.E., Southworth, M.W., Tori, K., Cushing, M.L.and Perler, F.
2012	The Thermococcus kodakaraensis Tko CDC21-1 intein activates its N-terminal splice junction in the absence of a conserved histidine by a compensatory mechanism	Biochemistry	Tori, K., Cheriyan, M., Pedamallus, C.S., Contreras, M.A. and Perler, F.B.
2017	Sequential formation of two branched intermediates during protein splicing of class three inteins	Extrmophiles	Tori, K. and Perler, F.
2011	Intravesicle Isothermal DNA Replication.	BMC Res Notes	Torino, D., Del Bianco, C., Ross, L., Ong, J.and Mansy, S.
2012	Efficient and sequence-independent replication of DNA containing a third base pair establishes a functional six-letter genetic alphabet.	Proc. Natl. Acad. Sci. USA	Malyshev, D.A., Dhami, K., Quach, H.T., Lavergne, T., Ordoukhanian, P., Torkamani, A. and Romesberg, F.E.
2008	A cell-based luciferase assay amenable to high-throughput screening of inhibitors of arenavirus budding.	Virology	Capul, A.A. and de la Torre, J.C.
2008	A cell-based luciferase assay amenable to high-throughput screening of inhibitors of arenavirus budding	Virology	Capul, A.A. and de la Torre, J.C.
2016	Incipient sympatric speciation in Midas cichlid fish from the youngest and one of the smallest crater lakes in Nicaragua due to differential use of the benthic and limnetic habitats?	Ecol Evol.	Kautt AF, Machado-Schiaffino G, Torres-Dowdall J, Meyer A.
	An insight into the various regulatory mechanisms modulating human DNA methyltransferase 1 stability and function	Epigenetics	Kar, S., Deb, M., Sengupta, D. Shilpi, A., Parbin, S., Torrisani, J., Pradhan, S. and Patra, S.
2013	DNMT1-interacting RNAs block gene-specific DNA methylation	Nature	Annalisa Di Ruscio, Alexander K. Ebralidze, Touati Benoukraf, Giovanni Amabile, Loyal A. Goff, Jolyon Terragni, Maria Eugenia Figueroa, Lorena Lobo De Figueiredo Pontes, Meritxell Alberich-Jorda, Konstantin K. Ebralidze, Sriharsa Pradhan, John L. Rinn, Daniel G. Tenen
2016	Comparative Methylome Analysis of the Occasional Ruminant Respiratory Pathogen Bibersteinia trehalosi.	PLoS One	Anton, B.P., Harhay, G.P., Smith, T.P., Blom, J. and Roberts, R.J.
2008	The Caenorhabditis elegans NR4A nuclear receptor is required for spermatheca morphogenesis.	Dev.Biol.	Gissendanner, C.R., Kelley, K., Nguyen, T.Q., Hoener, M.C., Sluder, A.E.and Maina, C.V.
2013	Two new restriction endonucleases from Proteus vulgaris.	Nucl.Acids Res.	Gingeras, T.R., Greenough, L., Schildkraut, I., and Roberts, R.J.
2015	The use of museum specimens with high-throughput DNA sequen.	J Hum Evol.	Burrell AS, Disotell TR, Bergey CM.
1981	Two new restriction endonucleases from Proteus vulgaris.	Nucl.Acids Res.	Gingeras, T.R., Greenough, L., Schildkraut, I., and Roberts, R.J.
1983	The isolation and characterization of the Escherichia coli DNA adenine methylase (dam) gene	Nucleic Acids Res.	Brooks, J.E., Blumenthal, R.M., Gingeras, T.R.
2016	Complete genome sequence of Brevibacterium linens SMQ-1335.	Genome Announcements	De Melo, A., Labrie, S., Dumaresq, J., Roberts, R., Tremblay, D. and Moineau, S.
1989	Genetic and physical mapping of the mcrA (rglA) and mcrB (rglB) loci of Escherichia coli K-12.	Genetics	Raleigh, E.A., Trimarchi, R., and Revel, H.
2015	Bovine embryo sex determination by multiplex loop-mediated isothermal amplification.	Theriogenology	Trisadee Khamlor, Petai Pongpiachan, Rangsun Parnpai, Kanchana Punyawai, Siwat Sangsritavong, Nipa Chokesajjawatee	Isothermal Amplification
2007	The level of synthesis and secretion of Gaussia princeps luciferase in transfected CHO cells is heavily dependent on the choice of signal peptide	J. Biotechnol	Knappskog, S., Ravneberg, H., Gjerdrum, C., Trosse, C., Stern, B., and Pryme I.F.
2014	Phosphorylation decreases ubiquitylation of the thiazide-sensitive cotransporter NCC and subsequent clathrin-mediated endocytosis	J Biol Chem	Rosenbaek LL, Kortenoeven ML, Aroankins TS, Fenton RA	Glycobiology
1991	Application of a novel chemiluminescence-based DNA detection method to single-vector and multiplex DNA sequencing.	BioTechniques	Creasey, A., D'Angio, L., Dunne, T.S., Kissinger, C., O'Keefe, T., Perry-O'Keefe, H., Moran, L.S., Roskey, M., Schildkraut, I.and Sears, L.E.
2015	Transcriptional Analysis of Deinococcus radiodurans Reveals Novel Small RNAs That Are Differentially Expressed under Ionizing Radiation.	Appl. Environ. Microbiol.	Tsai, H.C. et al
1991	Histochemical localization of gene expression in Onchocerca volvulus: in situ DNA histohybridization and immuno-cytochemistry.	Mol.Biochem.Parasitol.	Tuan, R.S., Shepley, K.J., M.M., M., Abraham, D., and Perler, F.B.
1992	Characterization of a muscle-associated antigen from Wuchereria bancrofti.	Exp.Parasitol.	Raghavan, N., Maina, C.V., Fitzgerald, P.C., Tuan, R.S., Slatko, B.E., Ottesen, E.A., and Nutman, T.B.
1989	Human T-cell stimulation, molecular characterization and in situ mRNA localization of a Brugia malayi recombinant antigen.	Mol.Biochem.Parasitol.	Arasu, P., Nutman, T.B., Steel, C., Mulligan, M.M., Abraham, D., Tuan, R.S., and Perler, F.B.
2002	Selection for mutants improving expression of an anti-MAP kinase monoclonal antibody by filamentous phage display.	J.Immunol.Methods	Tuckey, C.D.and Noren, C.J.
2015	Efficient expression of full-length antibodies in the cytoplasm of engineered bacteria	Nature Communications	Robinson, M.-P., Ke, N., Lobstein, J., Peterson, C., Szkodny, A., Mansell, T.J., Tuckey, C., Riggs, P.D., Colussi, P.A., Noren, C.J., Taron, C.H., Delisa, M.P., Berkmen, M.
2015	Efficient expression of full-length antibodies in the cytoplasm of engineered bacteria	Nat Commun.	Robinson MP, Ke N, Lobstein J, Peterson C, Szkodny A, Mansell TJ, Tuckey C, Riggs PD, Colussi PA, Noren CJ, Taron CH, DeLisa MP, Berkmen M.
2005	Protein-functionalized polymer brushes	Biomacromolecules	Tugulu S. et al.
1998	Novel, sensitive and low-cost diagnostic tests for "river blindness" - detection of specific antigens in tears, urine and dermal fluid.	Trop.Med.Inter.Health	Ngu, J.L., Knenfou, C., Capuli, E., McMoli, T.E., Perler, F., Mbwagbor, J., Tumme, C., Nlatte, O.B., Donfack, J.and Asonganyi, T.
2013	Active stabilization of human endothelial nitric oxide synthase mRNA by hnRNP E1 protects against antisense RNA and microRNAs	Mol Cell Biol	Ho, J.J., Robb, G.B., Tai, S.C., Turgeon, P.J., Mawji, I.A., Man, H.S. and Marsden, P.A.
2006	The role of Wolbachia in the biology and pathogenesis of filariasis	Insect Symbiosis	Turner, J., Foster, J., Ganatra, M., Slatko, B.and Taylor, M.
2012	The methylomes of six bacteria	Nucleic Acids Res.	Murray, I.A., Clark, T.A., Morgan, R.D., Boitano, M., Anton, B.P., Luong, K., Fomenkov, A., Turner, S.W., Korlach, J. and Roberts, R.J.
2000	Generation of a dual-labeled fluorescence biosensor for Crk-II phosphorylation using solid-phase expressed protein ligation	Chem. Biol	Cotton, G.J. and Muir, T.W.
2010	FRT-Seq: amplification-free, strand-specific transciptome sequencing	Nature Methods	Mamanova, L., Andrews, R.M., James, K.D., Sheridan, E.M., Ellis, P.D., Langford, C.F., Ost, T.W., Collins, J.E. and Turner, D.J.
1993	Brugia pahangi and Brugia malayi: A Surface-Associated Glycoprotein (gp15/400) is Composed of Multiple Tandemly Repeated Units and Processed from a 400-kDa Precursor1.	Exp.Parasitol.	Tweedie, S., Paxton.W, A., Ingram, L., Maizels, R.M., McReynolds, L.A., and Selkirk, M.E.
2014	DevR (DosR) mimetic peptides impair transcriptional regulation and survival of Mycobacterium tuberculosis under hypoxia by inhibiting the autokinase activity of DevS sensor kinase	BMC Microbiol	Kaur K, Taneja NK, Dhingra S, Tyagi JS	Phage Display
2001	Determination of Wolbachia Genome Size by Pulsed-Field Gel Electrophoresis.	J.Bacteriol.	Sun, L.V., Foster, J.M., Tzertzinis, G., Ono, M., Bandi, C., Slatko, B.E.and O'Neill, S.L.
2010	An EcR homolog from the filarial parasite, Dirofilaria immitis requires a ligand-activated partner for transactivation.	Mol.Biochem.Parasitol.	Shea, C., Richer, J., Tzertzinis, G.and Maina, C.V.
2010	Controlled expression of functional miR-122 with a ligand inducible expression system.	BMC Biotechnology	Shea, C.and Tzertzinis, G.
2012	Substrate cooperativity in marine luciferases	PLoS One	Tzertzinis, G., Schildkraut, E., and Schildkraut, I.
2012	Substrate cooperativity in marine luciferases	PLoS One	Tzertzinis, G., Schildkraut, E. and Schildkraut, I.
2007	Determination of silencing potency of synthetic and RNase III-generated siRNA using a secreted luciferase assay	Biotechniques	Morlighem, J.E., Petit, C. and Tzertzinis, G.
2007	Determination of silencing potency of synthetic and RNase III-generated siRNA using a secreted luciferase assay.	BioTechniques	Morlighem, J-E., Petit, C.and Tzertzinis, G.
2007	Determination of silencing potency of synthetic and RNase Ill-generated siRNA using a secreted luciferase assay.	Biotechniques	Morlighem, J.E., Petit, C and Tzertzinis, G.
2008	RNA-Dependent DNA Polymerases.	Curr.Protoc.Mol.Biol.	Tzertzinis, G., Tabor, S., and Nichols, N.M.
2011	Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq	Genome Res.	Saiful, I., Kjällquist, U., Moliner, A. et al
2015	GADD45a physically and functionally interacts with TET1Publication	Differentiation	Kienhöfer S., Musheev M., Stapf U., Helm M., Schomacher L., Niehrs C., Schäfer A.	Epigenetics
2007	A sensitive fluorescence intensity assay for deubiquitinating proteases using ubiquitin-rhodamine110-glycine as substrate	Anal Biochem.	Hassiepen, U., et. al.
2009	A single nucleotide polymorphism in the human serotonin transporter introduces a new site for N-linked glycosylation	Neuropharmacology	Rasmussen, T.N., Plenge, P., Bay, T., Egebjerg, J., Gether, U.	Glycobiology
2010	Ribosome display with the PURE technology	Methods Mol Biol.	Ueda, T., Kanamori, T., Ohashi, H.
2014	A versatile system for USER cloning-based assembly of expression vectors for mammalian cell engineering	PLoS One	Lund AM, Kildegaard HF, Petersen MB, Rank J, Hansen BG, Andersen MR, Mortensen UH	USER™ Cloning
2011	Expanding the genetic code of Escherichia coli with Phosphoserine	Science	Park, H.S., Hohn, M.J., Umehara, T., Guo. L.T., Osborne, E.M., Benner, J., Noren, C.J., Rinehart, J. and Soll, D.
2010	Reduced evolvability of Escherichia coli MDS42, an IS-less cellular chassis for molecular and synthetic biology applications.	Microbial Cell Factories	Umenhoffer, K., Feher, T., Baliko, G., Ayaydin, F.Posfai, J., Blattner, F.R.and Posfai, G.
2012	Sensitive detection of chromatin coassociations using enhanced chromosome conformation capture on chip	Nat Protoc	Sexton T, Kurukuti S, Mitchell JA, Umlauf D, Nagano T, Fraser P	Epigenetics,DNA Methylation Analysis,Restriction Enzymes for Epigenetics
2010	Molecular Evidence for a Functional Ecdysone Signaling System in Brugia malayi.	PLoS Neglected Tropical Diseases	Tzertzinis, G., Egana, A.L., Palli, S.R., Robinson-Rechavi, M., Gissendanner, C.R., Liu, C., Unnasch, T.R.and Maina, C.V.
2012	Identification of genes containing ecdysone response elements in the genome of Brugia malayi	Mol Biochem Parasitol	Liu, C., Enright, T., Tzertzinis, G. and Unnasch, T.R.
2014	Ubiquity and diversity of human-associated demodex mites.	PLoS One	Megan S Thoemmes, Daniel J Fergus, Julie Urban, Michelle Trautwein, Robert R Dunn	Routine PCR
1999	Effect of CWG methylation on expression of plant genes.	Biochem J.	Pradhan, S., Urwin, N.A., Jenkins, G.I.and Adams, R.L.
1996	Plant methyltransferases and thier targets in the plant genome. In: Epigenetic Mechanisms of Gene Regulation	Cold Spring Habor Laboratory Press	Adams, R.L.P. Pradhan, S., Johnson, C.A, Lindsay, H., Shek, E.W.L., Jenkins, G.I., Urwin, N.A.R.
2011	Docking-dependent ubiquitination of the interferon regulatory factor-1 tumor suppressor protein by the ubiquitin ligase CHIP	J. Biol. Chem.	Narayan, V., Pion, E., Landré, V., MÃ¼ller, P. and Ball, K.L.
1998	Crystal Structure of the Cyclophilin-like Domain from the Parasitic Nematode Brugia Malayi.	Protein Sci.	Mikol, V., Ma, D., Carlow, C.K.S.
2013	Biochemical Characterization of Hypothetical Proteins from Helicobacter pylori.	PLOS ONE	Choi HP, Juarez S, Ciordia S, Fernandez M, Bargiela R, Albar JP, Mazumdar V, Anton BP, Kasif S, Ferrer M, Steffen M.
2015	Proteomic Analysis Reveals Aberrant O-GlcNAcylation of Extracellular Proteins from Breast Cancer Cell Secretion	Mol Biol Cell	Netsirisawan P., Chokchaichamnankit D., Srisomsap C., Svasti J., Champattanachai V.
2015	Complete Genome Sequence of Enteroinvasive Escherichia coli O96:H19 Associated with a Severe Foodborne Outbreak	Genome Announc	Pettengill EA, Hoffmann M, Binet R, Roberts RJ, Payne J, Allard M, Michelacci V, Minelli F, Morabito S.
2015	Highly efficient CRISPR/Cas9-mediated TAR cloning of genes and chromosomal loci from complex genomes in yeast	Nucleic Acids Res	Lee, NC., Larionov, V., Kouprina, N.
2006	Visualizing receptor trafficking in living	PNAS	Jacquier V. et al.
2016	Genetics: profiling DNA methylation and beyond	Nature Methods	Marx V.	Epigenetics,Restriction Enzymes for Epigenetics
2014	Clathrin-independent pathways do not contribute significantly to endocytic flux	Elife	Bitsikas V, Corrêa IR, Nichols BJ
2014	Evaluation of fluorophores to label SNAP-tag fused proteins for multicolor single-molecule tracking microscopy in live cells		Bosch PJ, Corrêa IR Jr, Sonntag MH, Ibach J, Brunsveld L, Kanger JS, Subramaniam V
2005	Explosive Lineage-Specific Expansion of the Orphan Nuclear Receptor HNF4 in Nematodes.	J Mol Evol.	Robinson-Rechavi, M, Maina, C.V., Gissendanner, C.R., Laudet, V., Sluder, A.
2005	Specificity changes in the evolution of Type II restriction endonucleases- A Biochemical and bioinformatic analysis of restriction enzymes that recognize unrelated sequences	J Biol. Chem.	Pingoud, V., Sudina, A., Geyer, H., Bujnicki, J.M., Lurz, R., Luder, G., Morgan, R., Kubareva, E., Pingoud, A.
1997	A New Enhancer of Position-Effect Variegation in Drosophila melanogaster Encodes a Putative RNA Helicase That Binds Chromosomes and Is Regulated by the Cell Cycle.	Genetics Society of America	Eberl, D.F., Lorenz, L.J., Melnick, M.B., Sood, V., Lasko, P., and Perrimon, N.
2007	A covalent chemical genotype-phenotype linkage for in vitro protein evolution	ChemBioChem.	Stein, V. et al.
2009	An efficient method to assemble linear DNA templates for in vitro screening and selection systems	Nuc. Acids Res	Stein V. and Hollfeder F.
2009	EcR-B1 and Usp nuclear hormone receptors regulate expression of the VM32E eggshell gene during Drosophila oogenesis.	Dev.Biol.	Bernardi, F., Romani, P., Tzertzinis, G., Gargiulo, G.and Cavaliere V.
2002	Dirofilaria immitis encodes Di-nhr-7, a putative orthologue of the Drosophila ecdysone-regulated E78 gene.	Mol.Biochem.Parasitol.	Crossgrove, K., Laudet, V.and Maina, C.V.
1998	A Mitogen-activated Protein Kinase Pathway is Required for mu-Opioid Receptor Desensitization.	J Biol Chem.	Polakiewicz, R.D., Schieferl, S.M., Dorner, L.F., Kansra, V.and Comb, M.J.
2010	Coordination sphere of the third metal site is essential to the activity and metal selectivity of alkaline phosphatases.	Protein Sci.	Koutsioulis, D., Lyskowski, A.Maki, S., Guthrie, E., Feller, G., Bouriotis, V.and Heikinheimo, P.
2001	Detection of Serum IgG Antibodies Specific for Wolbachia Surface Protein in Rhesus Monkeys Infected with Brugia malayi.	J Infectious Diseases	Punkosdy, G.A., Dennis, V.A., Lasater, B.L., Tzertzinis, G.foster, J.M.and Lammie, P.J.
2011	Chitosan but not chitin activates the inflammasome by a mechanism dependent upon phagocytosis.	J Biol Chem.	Bueter, C.L., Lee, C.K., Rathinam, V.A., Healy, G.J., Taron, C.H., Specht, C.A.and Levitz, S.M.
2016	Comprehensive Profiling of Glycosphingolipid Glycans Using a Novel Broad Specificity Endoglycoceramidase in a High-Throughput Workflow.		Albrecht, S., Vainauskas, S., Stöckmann, H., McManus, C., Taron, C.H. and Rudd, P.M.
2016	Profiling of core fucosylated N-glycans using a novel bacterial lectin that specifically recognizes α1,6 fucosylated chitobiose.	Sci Rep.	Vainauskas, S., Duke, R.M., McFarland, J., McClung, C., Ruse, C. and Taron, C.H.
2012	In vivo incorporation of an azide labeled sugar analog to detect mammalian	Carbohydrate Res.	Vainauskas, S., Cortes, L.K. and Taron, C.H.
2002	Evolutionary relationship of Alw261, Eco31I and Esp3I, restriction endonucleases that recognise overlapping sequences	Mol. Genet. Genomics	Bitinaite, J., Mitkaite, G., Dauksaite, V., Jakubauskas, A., Timinskas, A., Vaisvila, R., Lubys, A., Janulaitis, A.
2001	Discovery and distribution of super-integrons among pseudomonads.	Mol.Microbiol.	Vaisvila, R., Morgan, R.D., Posfai, J.and Raleigh, E.A.
2011	High sensitivity 4-hydroxymethylcytosine detection in Balb/C brain tissue.	J Vis Exp.	Davis, T.and Vaisvila, R.
2013	Protein engineering: single or multiple site-directed mutagenesis	Methods Mol Biol.	Hsieh, P.C. and Vaisvila, R.
2013	Gene synthesis by assembly of deoxyuridine-containing oligonucleotides	Methods Mol Biol.	Vaisvila, R. and Bitinaite, J.
2015	Comparison of loop-mediated isothermal amplification and real-time PCR for detecting Bordetella pertussis.	J Med Microbiol	Mohammad Reza Allahyar Torkaman, Kazunari Kamachi, Vajihe Sadat Nikbin, Masoumeh Nakhost Lotfi, Fereshteh Shahcheraghi	Isothermal Amplification
1999	Mutations of endo-B-N-acetylglucosaminidase H active site residues Asp130 and Glu132: Activities and conformations.	Protein Sci.	Rao, V., Cui, T., Guan, C., and Van Roey, P.
2013	Prokaryotic super program advisory committee DOE Joint Genome Institute, Walnut Creek, CA, March 27, 2013	Stand Genomic Science	Garrity, G.M. Banfield, J., Eisen, J., van der Lelie, N., McMahon, T., Rusch, D., Delong, E., Moran, M.A., Currie, C., Fuhrman, J., Hallam, S., Hugenholtz, P., Moran, N., Nelson, K., Roberts, R., Stepanauskas, R.
2006	Heterologous protein production in the yeast Kluyveromyces lactis.	FEMS Yeast Res.	van Ooyen, A.J.J., Dekker, P., Huang, M., Olsthoorn, M.M.A., Jacobs, D.I., Colussi, P.A.and Taron, C.H.
2006	Heterologous protein production in the yeast Kluyveromyces lactis	FEMS Yeast Res.	Van Ooyen, A.J.J., Dekker, P., Huang, M., Olsthoorn, M.M.A., Jacobs, D.I., Colussi P.A., and Taron, C.H.
2016	Single-cell 5hmC sequencing reveals chromosome-wide cell-to-cell variability and enables lineage reconstruction	Nature Biotechnology	Mooijman D, Dey S S, Boisset JC, Crosetto N, van Oudenaarden A	Epigenetics
2014	Consequences of the disease-related L78R mutation for dimerization and activity of STAT3	J Cell Sci	Domoszlai T, Martincuks A, Fahrenkamp D, Schmitz-Van de Leur H, Küster A, Müller-Newen G	Cellular Analysis,SNAP Cell
1995	Crystal structure of endo-beta-N-acetylglucosaminidase H at 1.9 A resolution: active-site geometry and substrate recognition.	Structure	Rao, V., Guan, C., and Van Roey, P.
1995	Active site and oligosaccharide recognition residues of peptide-N4-(N-acetyl-beta-D-glucosaminyl)asparagine amidase F.	J.Biol.Chem.	Kuhn, P., Guan, C., Cui, T., Tarentino, A.L., Plummer, T.H.J., and Van Roey, P.
1994	Crystallization and Preliminary Crystallographic Analysis of Two Endo-b-N-acetylglucosaminidases, Endo H and Endo F1.	J.Mol.Biol.	Van Roey, P., Silva, G.H., Rao, V., Plummer, J., T.H., Tarention, A.L., and Guan, C.
1988	The Amino Acid Sequence of the Eukaryotic DNA [N6-adenine] Methyltransferase, M-CviBIII, Has Regions of Similarity With the Prokaryotic Isoschizomer M-TaqI and Other DNA [N6-adenine] Methyltransferases.	Gene	Narva, K.E., Van Etten, J.L., Slatko, B.E.and Benner, J.S.
1997	Construction and characterization of a radio-iodinatable mutant of recombinant human CD4.	J.Immunol.Methods	Ferrer, M., Godbout, K., Sullivan, B., Austen, D., Sanderson, C., Kelley, K., Osburne, M., Harrison, S.and van Schravendijk, M.R.
2002	Merozoite surface protein-9 of Plasmodium vivax and related simian malaria parasites is orthologous to p101/ABRA of P.falciparum.	Mol.Biochem.Parasitol.	Vargas-Serrato, E., Barnwell, J.W., Ingravallo, P., Perler, F.B.and Galinski, M.R.
2007	USER friendly DNA engineering and cloning method by uracil excision	Nucl.Acids.Res.	Bitinaite, J., Rubino, M., Varma, K.H., Schildkraut, I., Vaisvila, R.and Vaiskunaite, R.
2014	Mutations in four glycosyl hydrolases reveal a highly coordinated pathway for rhodopsin biosynthesis and N-glycan trimming in Drosophila melanogaster	PLoS Genet	Rosenbaum EE, Vasiljevic E, Brehm KS, Colley NJ	Glycobiology
2015	Dynamic caveolae exclude bulk membrane proteins and are required for sorting of excess glycosphingolipids	Nat Commun	Elena Shvets, Vassilis Bitsikas, Gillian Howard, Carsten Gram Hansen, Benjamin J Nichols	SNAP Surface
2008	Molecular Mechanism of Drug-Dependent Ribosome Stalling	Mol. Cell.	Vazquez-Laslop, N., Thum, C., and Mankin, A.S.
2011	Efficient in vivo selection of a novel tumor-associated peptide from a phage display	Molecules	Veleva, A.N. et al.
2009	Topological studies of hSVCT1, the human sodium-dependent vitamin C transporter and the influence of N-glycosylation on its intracellular targeting	Exp. Cell Res.	Velho, A.M., Jarvis, S.M.	Glycobiology
2001	The sequence of the human genome	Science	Venter, J.C., Roberts, R.J.et al.
2015	Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont	BMC Genomics	Luck, A.N., Anderson, K.G., McClung, C.M., VerBerkmoes, N.C., Foster, J.M., Michalski, M.L. and Slatko, B.E.	Library Preparation for Next Generation Sequencing
2014	Proteomic identification of mammalian cell-surface derived glycosylphosphatidylinositol anchored proteins through selective glycan enrichment	Proteomics	Cortes LK, Vainauskas S, Dai N, McClung CM, Shah M, Benner JS, Jr IR, VerBerkmoes NC, Taron CH
2014	Colonization state influences the hemocyte proteome in a beneficial squid-Vibrio symbiosis	Mol Cell Proteomics	Schleicher, T.R., VerBerkmoes, N.C., Shah, M., Nyholm, S.V.
2002	Recombinant Gaussia luciferase. Overexpression, purification, and analytical application of a bioluminescent reporter for DNA hybridization	Anal Chem.	Verhaegen, M. and Christopoulos, T.K.
2002	Recombinant Gaussia luciferase. Overexpression, purification and analytical application of a bioluminescent reporter for DNA hybridization	Anal Chem	Verhaegen, M., Christopoulos, T.K.
2002	Gene therapy: reality or myth for the global bleeding disorders community?	Haemophilia	Kelley, K., Verma, I.and Pierce, G.F.
2010	Functional characterization of the YmcB and YqeV tRNA methylthiotransferases of Bacillus subtilis.	Nucl.Acids.Res.	Anton, B.P., Russell, S.P., Vertrees, J., Kasif, S., Raleigh, E.A., Limbach, P.A.and Roberts, R.J.
2003	Crystallization of restriction endonuclease SfiI in complex with DNA	Acta Crystallogr. D Biol. Crystallogr.	Viadiu, H., Vanamee, E.S., Jacobson, E.M., Schildkraut, I. and Aggarawl, A.K.
2000	Crystallization of Restriction Endonuclease BamHI with Nonspecific DNA.	J.Struct.Biol.	Viadiu, H., Kucera, R., Schildkraut, I.and Aggarwal, A.K.
2005	A view of consecutive binding events from structures of tetrameric endonuclease SfiI bound to DNA.	EMBO J.	Vanamee, E.S., Viadiu, H., Kucera, R., Dorner, L., Picone, S., Schildkraut, I.and Aggarwal, A.K.
2014	Procerain B, a cysteine protease from Calotropis procera, requires N-terminus pro-region for activity: cDNA cloning and expression with pro-sequence.	Protein Expr Purif	Vidhyadhar Nandana, Sushant Singh, Abhay Narayan Singh, Vikash Kumar Dubey	High-Fidelity PCR
2006	Highly efficient ribosome display selection by use of purified components for in vitro translation	J. Immunol Methods	Villemagne, D., Jackson, R. and Douthwaite, J.A.
2010	USER friendly DNA recombination (USERec): a simple and flexible near homology-independent method for gene library construction	Protein Eng Des Sel	Villiers BR, Stein V, Hollfelder F	USER™ Cloning
2003	NEBcutter: A program to cleave DNA with restriction enzymes.	Nucl.Acids Res.	Vincze, T., Posfai, J.and Roberts, R.J.
2003	REBASE Restriction enzymes and methyltransferases.	Nucl.Acids Res.	Roberts, R.J., Vincze, T., Posfai, J.and Macelis, D.
2013	Molecular dissection of the methylome of Burkholderia cenocepacia J2315	FEBS J.	Fomenkov, A., Clark, T., Spittle, K., Anton, B.M., Vincze, T., Korlach, J., Roberts, R.J.
2015	A database for DNA restriction and modification: enzymes, genes and genomes.	Nucleic Acids Research	Roberts, R.J., Vincze, T., Posfai, J., Macelis, D.
2015	REBASE - A database for DNA restriction and modification: enzymes, genes and genomes	Nucleic Acids Res	Roberts, R.J., Vincze, T., Posfai, J., Macelis, D.
2015	Complete Genome Sequence of the freshwater colorless sulfur bacterium Beggiatoa leptomitiformis neotype strain D-402T	Genome Announc.	Fomenkov, A., Vincze, T., Grabovich, M.Y., Dubinina, G., Orlova, M., Belousova, E., Roberts, R.J.
2016	Complete Genome Sequence of a Strain of Azospirillum thiophilum Isolated from a Sulfide Spring.	Genome Announc.	Fomenkov, A., Vincze, T., Grabovich, M., Anton, B.P., Dubinina, G., Orlova, M., Belousova, E. and Roberts, R.J.
2014	REBASE - A database for DNA restriction and modification: enzymes, genes and genomes	Nucleic Acids Research, Advance Access	Roberts, R.J., Vincze, T., Posfai, J., Macelis, D.
2005	REBASE - restriction enzymes and DNA methyltransferases.	Nucl.Acids.Res.	Roberts, R.J., Vincze, T., Posfai, J.and Macelis, D.
2010	REBASE – a database for DNA restriction and modification: enzymes, genes and genomes.	Nucl.Acids.Res.	Roberts, R.J., Vincze, T., Posfai, J., Macelis, D.
2007	Rebase--enzymes and genes for DNA restriction and modification	Nucleic Acids Res	Roberts, R.J., Vincze, T., Posfai, J., Macelis, D.
2017	Complete genome sequence and methylome analysis of Acinetobacter calcoaceticus 65		Fomenkov, A., Vincze, T., Degtyarev, S.K., Roberts, R.J.
2008	Efficient interval partitioning approach for global optimization.	Journal of Global Optimization	Pedamallu, C.S., Ozdamar, L., Csendes, T.and Vinko, T.
1995	Two novel restriction endonucleases from Campylobacter jejuni.	Gene	Vitor, J.M., and Morgan, R.D.
1993	Restriction enzymes from Campylobacter coli strains.	Acta gastroenterol.belg.	Vitor, J.M.B., Polisson, C., Cabrita, J., and Silva, R.V.C.
2005	Multicolor imaging of cell surface proteins	J. Am. Chem. Soc.	Vivero-Pol L. et al.
2017	Examining Sources of Error in PCR by Single-Molecule Sequencing.	PLoS ONE	Potapov Vladamir, Ong Jennifer L
2008	The structure of SgrAI bound to DNA; recognition of an 8 base pair target.	Nucl.Acids.Res.	Dunten, P.W., Little, E.J., Gregory, M.T., Manohar, V.M., Dalton, M., Hough, D., Bitinaite, J., Horton, N.C.
2008	DNA distortion and specificity in a sequence-specific endonuclease.	J.Mol.Biol.	Babic, A.C., Little, E.J., Manohar, V.M., Bitinaite, J., Horton, N.C.
2017	Genome Announce	Genome Announce.	Fomenkov, A., Akimov, V.N., Vasilyeva, L.V., Andersen, D.T., Vincze, T., Roberts, R.J.
2007	A small RNA regulates multiple ABC transporter mRNA's by targeting C/A-rich elements inside and upstream of ribosome-binding sites	Gene Dev.	Sharma, C.M., Darfeuille, F., Plantinga, T.H., and Vogel, J.
	Screening of genetic parameters for soluble protein expression in Escherichia coli	Protein Expression and Purification	Vernet, E., Kotzsch, A., Voldborg, B., et al.
2015	Trans-Pacific RAD-Seq population genomics confirms introgressive hybridization in Eastern Pacific Pocillopora corals.	Mol Phylogenet Evol.	Combosch DJ, Vollmer SV.
2000	The LipB protein is a negative regulator of dam gene expression in Escherichia coli.	Biochim.Biophys.Acta.	Vaisvila, R., Rasmussen, L.J., Lobner-Olsen, A., von Freisleben, U.and Marinus, M.G.
2013	ROLE OF HUMAN HYPOXANTHINE GUANINE PHOSPHORIBOSYLTRANSFERASE IN ACTIVATION OF THE ANTIVIRAL AGENT T-705 (FAVIPIRAVIR)	Molecular Pharmacology Fast Forward	Lieve Naesens, Luke Guddat, Dianne Keough, André B.P. van Kuilenburg, Judith Meijer, Johan Vande Voorde and Jan Balzarini
2015	Functional analysis of microRNA activity in Brugia malayi	Int J Parasitol	Liu, C., Voronin, D., Poole, C.B., Bachu, S., Rogers, M.B., Jin, J., Ghedin, E., Lustigman, S., McReynolds, L.A. and Unnasch, T.R.
2006	Real-time observation of trigger factor function on translating ribosomes	Nature	Kaiser, C.M., Chang, H.C., Agashe, V.R., Lakshmipathy, S.K., Etchells, S.A., Hayer-Hartl, M., Hartl, F.U. and Barral, J.M.
2009	A genomescale RNAi screen for Oct4 modulators defines a role of the Paf1 complex for embryonic stem cell identity	Cell Stem Cell	Ding, L., Paszkowski-Rogacz, M., Nitzsche, A., Slabicki, M.M., Heninger, A.K., de Vries, I., Kittler, R., Junqueira, M., Shevchenko, A., Schulz, H., Hubner, N., Doss, M.X., Sachinidis, A., Hescheler, J., Iacone, R., Anastassiadis, K., Stewart, A.F., Pisabarro, M.T., Caldarelli, A., Poser, I., Theis, M. and Buchholz, F.
2009	A genome-scale RNAi screen for Oct4 modulators defines a role of the Pafl complex for embryonic stem cell identity.	Cell Stem Cell	Ding, L., Paszkowski-Rogacz, M., Nitzsche, A., Slabicki, M.M., Heninger, A.K., de Vries, I., Kittler, R., Junqueira, M., Shevchenko, A., Schulz, H., Hubner, N., Doss, M.X., Sachinidis, A., Hescheler, J., Iacone, R., Anastassiadis, K., Stewart, A.F., Pisabarro, M.T., Caldarelli. A.. Poser, I., Theis, M. and Buchholz, F
2006	Profluorescent protein fragments for fast bimolecular fluorescence complementation in vitro	Nat. Protoc.	Demidov, V.V., and Broude, N.E.
1988	Isolation and properties of a new site specific endonuclease Bme142I from Bacillus megaterium	Nucleic Acids Res.	Fomenkov, A.I., Kramarov, V.M., Andreev, L.V., Mochalov, V.V., Smolyaninov, V.V., Matvienko, N.I.
2006	Properties of the C-terminal domain of enzyme I of the Escherichia coli phosphotransferase system.	J Biol Chem.	Patel, H.V., Vyas, K.A., Mattoo, R.L., Southworth M., Perler, F.B., Comb, D.and Roseman, S.
2003	A fluorescence resonance energy transfer sensor for the beta-domain of metallothionein	Proc. Natl. Acad. Sci. USA	Hong, S.H., and Maret, W.
2004	SPR-based interaction studies with small molecular weight ligands using hAGT fusion proteins	Anal. Biochem.	Huber W. et al.
2013	Decreased vancomycin susceptibility in Staphylococcus aureus caused by IS256 tempering of WalKR expression	Antimicrob Agents Chemother	McEvoy CR, Tsuji B, Gao W, Seemann T, Porter JL, Doig K, Ngo D, Howden BP, Stinear TP
2015	A New Approach to Produce HIV-1 Envelope Trimers: BOTH CLEAVAGE AND PROPER GLYCOSYLATION ARE ESSENTIAL TO GENERATE AUTHENTIC TRIMERS.	J Biol Chem	AlSalmi W., Mahalingam M., Ananthaswamy N., Hamlin C., Flores D., Gao G., Rao V.B.
2015	Selective expression of sense and antisense transcripts of the sushi-ichi-related retrotransposon - derived family during mouse placentogenesis.	Retrovirology	Christine Henke, Pamela L Strissel, Maria-Theresa Schubert, Megan Mitchell, Claus C Stolt, Florian Faschingbauer, Matthias W Beckmann, Reiner Strick	High-Fidelity PCR
2015	Novel recA-Independent Horizontal Gene Transfer in Escherichia coli K-12	PloS One	Kingston, A. W., Roussel-Rossin, C., Dupont, C., Raleigh, E. A.
2015	The diversity of Bet v 1-specific IgG4 antibodies remains mostly constant during the course of birch pollen immunotherapy	J Allergy Clin Immunol	Subbarayal B., Schiller D., Möbs C., Pfützner W., Jahn-Schmid B., Gepp B., Breiteneder H., Vieths S., Bohle B.
	In vitro RNA interference and immunofluorescence-based phenotype analysis in a human parasitic nematode, Brugia malayi	Parasites and Vectors	Landmann, F., Foster, J.M., Slatko, B.E. and Sullivan, W.
2006	The role of single N-glycans in proteolytic processing and cell surface transport of the Lassa virus glycoprotein.GP-C.	Virol. J.	Eichler, R., Lenz, O., Garten, W., Strecker, T.
2016	Host-Associated Genomic Features of the Novel Uncultured Intracellular Pathogen Ca. Ichthyocystis Revealed by Direct Sequencing of Epitheliocysts.	Genome Biol. Evol.	Qi, W. et al.
2016	Rapid, Low-Cost Detection of Zika Virus Using Programmable Biomolecular Components	Cell	Pardee P, Green A A, Takahashi M K, Braff D, Lambert G, Lee J W, Ferrante T, Ma D, Donghia N, Fan M, Daringer N M, Bosch I, Dudley D M, O’Connor D H, Gehrke H, Collins J J
2014	Sequencing of captive target transcripts identifies the network of regulated genes and functions of primate-specific miR-522	Cell Rep	Tan SM, Kirchner R, Jin J, Hofmann O, McReynolds L, Hide W, Lieberman J
2014	Co-evolution between an Endosymbiont and Its Nematode Host: Wolbachia Asymmetric Posterior Localization and AP Polarity Establishment	PLoS Negl Trop Dis	Landmann F, Foster JM, Michalski ML, Slatko BE, Sullivan W
2014	Diversity and Expression of MicroRNAs in the Filarial Parasite, Brugia malayi.	PLoS One	Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA.
2014	The role of an asymmetrically inherited endosymbiont in robust establishment of host embryonic polarity	PLoS Negl. Trop. Dis	Landmann, F., Foster, J.M., Michalski, S., Slatko, B., Sullivan, W.
1995	A model for DNA binding and enzyme action derived from crystallographic studies of the TaqI N6-adenine-methyltransferase.	Gene	Schluckebier, G., Labahn, J., Granzin, J., Schildkraut, I., and Saenger, W.
2010	The nucleoporin Nup188 controls passage of membrane proteins across the nuclear pore complex	J. Cell Biol.	Theerthagiri, G., Eisenhardt, N., Schwarz, H. and Antonin, W.
2010	Asymmetric Wolbachia Segregation during Early Brugia malayi Embryogenesis Determines Its Distribution in Adult Host Tissues.	PLoS Negl Trop Dis	Landmann, F., Slatko, B., Foster, J.M.and Sullivan, W.
1996	Activation of glycosylasparaginase.Formation of Active N-Terminal Threonine by Intramolecular Autoproteolysis.	J.Biol.Chem.	Guan, C., Cui, T., Rao, V., Liao, W., Benner, J., Lin, C.L., and Comb, D.
1994	Expression, purification, and crystallization of restriction endonuclease PvuII with DNA containing its recognition site	Proteins	Balendiran, K., Bonventre, J., Knott, R., Jack, W., Benner, J., Schildkraut, I., and Anderson, J.E.
1988	Nomenclature for bacterial genes coding for class-II restriction endonucleases and modification methyltransferases.	Gene	Szybalski, W., Blumenthal, R.M., Brooks, J.E., Hattman, S., and Raleigh, E.A.
2007	Influence of chelate conjugation on a newly identified tumor-targeting peptide	J. Nucl. Med.	Mier, W. et al.
2008	Ribosomal Synthesis of N-Methyl Peptides	J. Am. Chem. Soc.	Subtelny. A. O.,Hartman, M. C. T., and Szostak, J. W.
2008	Development of a dual-luciferase reporter system for in vivo visualization of MicroRNA biogenesis and posttranscriptional regulation	Nucl. Med.	Lee, J.Y., Kim, S., Hwang do, W., Jeong, J.M., Chung, J.K., Lee, M.C. and Lee, D.S.J.
2008	Development of a dual-luciferase reporter system for in vivo visualization of MicroRNA biogenesis and posttranscriptional regulation	Nucl. Med.	Lee, J.Y., Kim, S., Hwang do, W., Jeong, J.M.,Chung, J.K., Lee, M.C., Lee, D.S.J.
2009	Fluorescence in living systems: applications in chemical biology	Wiley Encyc. of Chem. Biol.	Cornish, V. W.
1997	Phosphorylation Of The Casein Kinase II Domain Of B-50 (GAP-43) In Rat Cortical Growth Cones.	J.Neurochem.(US)	Edgar, M.A., Pasinelli, P., DeWit, M., Anton, B., Dokas, L.A., Pastorino, L., DiLuca, M., Cattabeni, F., Gispen, W.H.and DeGraan, P.N.
2015	Evolution of stickleback in 50 years on earthquake-uplifted islands.	Proc Natl Acad Sci U S A	Lescak EA, Bassham SL, Catchen J, Gelmond O, Sherbick ML, von Hippel FA, Cresko WA.
2014	The other face of restriction: modification-dependent enzymes.	Nucleic Acids Res	Loenen, W.A., Raleigh, E.A.	Restriction Enzyme Digestion,Restriction Enzyme Digestion
2014	A trimeric lipoprotein assists in trimeric autotransporter biogenesis in enterobacteria	J Biol Chem	Grin I, Hartmann MD, Sauer G, Hernandez Alvarez B, Schütz M, Wagner S, Madlung J, Macek B, Felipe-Lopez A, Hensel M, Lupas A, Linke D	Phage Display
2008	The way forward, enhanced characterization of therapeutic antibody glycosylation: comparison of three level mass spectrometry-based strategies	J. Chromatogr. B Analyt. Technol. Biomed. Life Sci.	Wagner-Rousset, E., Bednarczyk, A., Bussat, M.C., Colas, O., Corvaïa, N., Schaeffer, C., Van Dorsselaer, A., Beck, A.	Glycobiology
1998	FokI Dimerization is Required for DNA Cleavage.	Proc.Natl.Acad.Sci.USA	Bitinaite, J., Wah, D.A., Aggarwal, A.K., Schildkraut, I.
1998	Structure of FokI has Implications for DNA Cleavage.	Proc.Natl.Acad.Sci.USA	Wah, D.A., Bitinaite, J., Schildkraut, I., Aggarwal, A.K.
1997	Crystallization and Preliminary X-ray Analysis of Restriction Endonuclease FokI Bound to DNA.	FEBS Lett.	Hirsch, J.A., Wah, D.A., Dorner, L.F., Schildkraut, I., Aggarwal, A.K.
1997	Structure of the Multimodular Endonuclease FokI Bound to DNA.	Nature	Wah, D.A., Hirsch, J.A., Dorner, L.F., Schildkraut, I., Aggarwal, A.K.
2010	Functional Immobilization and Patterning of Proteins by an Enzymatic Transfer Reaction	Anal. Chem.	Waichman S. et al.
1991	Chacterization of Expression of the Escherichia coli Mrr Restriction System.	J.Bacteriol.	Waite-Rees, P.A., Keating, C.J., Moran, L.S., Slatko, B.E., Hornstra, L.J., and Benner, J.S.
1991	Characterization of the cloned BamHI restriction modification system: its nucleotide sequence, properties of the methylase, and expression in heterologous hosts.	Nucl.Acids Res.	Brooks, J.E., Nathan, P.D., Landry, D., Sznyter, L.A., Waite-Rees, P., Ives, C.L., Moran, L.S., Slatko, B.E., and Benner, J.S.
2011	Using a structural and logics systems approach to infer bHLH-DNA binding specificity determinants	Nucleic Acids Res.	De Masi, F., Grove, C.A., Vedenko, A., Alibés, A., Gisselbrecht, S.S., Serrano, L., Bulyk, M.L. and Walhout, A.J.
2006	Enabling Glycosyltransferase Evolution: A Facile Substrate-Attachment Strategy for Phage-Display Enzyme Evolution.	Chembiochem.	Love K.R., Swoboda J.G., Noren C.J.and Walker, S.
2014	Comparison of Subtypes of Listeria monocytogenes Isolates from Naturally Contaminated Watershed Samples with and without a Selective Secondary Enrichment	PLoS ONE	Gorski L, Walker S, Liang AS, Nguyen KM, Govoni J, et al.
2010	Mutations in maltose-binding protein that alter affinity and solubility properties.	Appl Microbiol.Biotechnol.	Walker, I.H., Hsieh, P.C.and Riggs, P.D.
1997	Catalytic and DNA Binding Properties of PvuII Restriction Endonuclease Mutants.	J.Biol.Chem.	Nastri, H.G., Evans, P.D., Walker, I.H., and Riggs, P.D.
1987	Cloning and characterization of an abundant Plasmodium knowlesi antigen which cross reacts with Gambian sera.	Mol.Biochem.Parasitol.	Perler, F.B., Moon, A.M., Qiang, B.-Q., Meda, M., Dalton, M., Card, C., Schmidt-Ullrich, R., Wallach, D., Lynch, J., and Donelson, J.E.
2001	Molecular Biology Problem Solver: A Laboratory Guide		Bonventre, J., Walsh, P.and Robinson, D.
2001	Restriction endonucleases. In: Molecular biology problem solver	Wiley-Liss, Inc.	Robinson, D., Walsh, P.R., Bonventre, J.A.
2010	Optimizing Clarification and Concentration Steps Using an Automated Process System and Design of Experiments (DoE).	BioProcessing Journal	Bowen, T.L., Blake, C., Cohen, D.R.and Walsh, K.
2013	Digital droplet PCR for rapid quantification of donor DNA in the circulation of transplant recipients as a potential universal biomarker of graft injury.	Clin. Chem.	Beck J, Bierau S, Balzer S, Andag R, Kanzow P, Schmitz J, Gaedcke J, Moerer O, Slotta JE, Walson P, Kollmar O, Oellerich M, Schütz E.
2003	DNA -repair protein hHR23a alters its protein structure upon binding proteasomal subunit S5a	Proc. Natl. Acad. Sci. USA	Walters, K.J., et al.
2014	The other face of restriction: modification-dependent enzymes	Nucleic Acids Res.	Loenen, W.A.M. and Raleigh, E.A.
2007	High-Level Heterologous Expression of Bacillus halodurans Putative Xylanase Xyn11A (BH0899) in Kluyveromyces lactis	Biosci. Biotechnol. Biochem.	Wamalwa, B.M., et al.
2003	Visualization of coupled protein folding and binding in bacteria and purification of the heterodimeric complex.	Proc.Natl.Acad.Sci.USA	Wang, H.and Chong, S.
2000	Dissecting the Chemistry of Protein Splicing and its Applications	Angew.Chem.Int.Ed.	Noren, C.J., Wang, J.and Perler, F.B.
2004	First sequenced genome of a parasitic nematode.	Trends Parasitol.	Ghedin, E., Wang, S., Foster, J.and Slatko, B.
2013	The oil palm SHELL gene controls oil yield and encodes a homologue of SEEDSTICK	Nature	Singh R, Low ET, Ooi LC, Ong-Abdullah M, Ting NC, Nagappan J, Nookiah R, Amiruddin MD, Rosli R, Manaf MA, Chan KL, Halim MA, Azizi N, Lakey N, Smith SW, Budiman MA, Hogan M, Bacher B, Van Brunt A, Wang C, Ordway JM, Sambanthamurthi R, Martienssen RA	Gibson Assembly®
2015	A Proline-Rich Domain in the Genotype 4 Hepatitis E Virus ORF3	PLoS One	Wang H., Fangxiao J., Liang H., Gu H.
2015	A Structural and Functional Comparison Between Infectious and Non-Infectious Autocatalytic Recombinant PrP Conformers	Sci Rep	Noble GP., Wang DW., Walsh DJ., Barone JR., Miller MB., Nishina KA., Li S., Supattapone S.
2015	CRISPR/Cas9 nuclease cleavage combined with Gibson assembly for seamless cloning	Biotechniques	Wang JW, Wang A, Li K, Wang B, Jin S, Reiser M, Lockey RF
2015	Kinetic pathway of 40S ribosomal subunit recruitment to hepatitis C virus internal ribosome entry site	Proc Natl Acad Sci U S A	Gabriele Fuchs, Alexey N Petrov, Caleb D Marceau, Lauren M Popov, Jin Chen, Sen E O'Leary, Richard Wang, Jan E Carette, Peter Sarnow, Joseph D Puglisi	SNAP Cell,SNAP Surface
2015	Evaluation of a glycoengineered monoclonal antibody via LC-MS analysis in combination with multiple enzymatic digestion	MAbs	Liu R, Giddens J, McClung CM, Magnelli PE, Wang LX, Guthrie EP.
2016	Evaluation of a glycoengineered monoclonal antibody via LC-MS analysis in combination with multiple enzymatic digestion	MAbs	Liu, R., Giddens, J., McClung, C.M., Magnelli, P.E., Wang, L.X., Guthrie, E.P.
2014	Rapid and Efficient Assembly of Transcription Activator-Like Effector Genes by USER Cloning	J Genet Genomics	Wang S, Li W, Wang S, Hu B	USER™ Cloning
1995	Orphon spliced-leader sequences form part of a repetitive element in Angiostrongylus cantonensis.	Nucl.Acids Res.	Joshua, G.W., Perler, F.B., and Wang, C.C.
2010	Frequent mutations of chromatin remodeling gene ARID1A in ovarian clear cell carcinoma	Science	Jones, S., Wang, T.-L., Shih, Ie-M., et al
2008	Selective labeling of proteins with chemical probes in living cells	Physiology	Lin M.Z. and Wang L.
2015	Genome Filtering for New DNA Biomarkers of Loa loa Infection Suitable for Loop-Mediated	PLoS One	Poole CB, Ettwiller L, Tanner NA, Evans TC Jr., Wanji S,Carlow CK
1983	Analysis of Regulation of phoB Expression Using a phoB-cat Fusion.	J.Bacteriol.	Guan, C., Wanner, B., and Inouye, H.
2010	Rapid electronic detection of probe-specific microRNAs using thin nanopore sensors	Nature Nanotech	Wanunu, M., et al.
2010	Discrimination of methylcytosine from hydroxymethylcytosine in DNA molecular	J. Am. Chem. Soc.	Wanunu, M. et al.
2013	Anti-Wolbachia drug discovery and development: safe macrofilaricides for onchocerciasis and lymphatic filariasis	Parasitology	Taylor, M.J., Hoerauf, A., Townson, S., Slatko, B.E. and Ward, S.A
2014	Anti-Wolbachia drug discovery and development: safe macrofilaricides for onchocerciasis and lymphatic filariasis	Parasitology/FirstView Article	Taylor, M.J., Hoerauf, A., Townson, S., Slatko, B.E. and Ward, S.A.
2002	Sequencing and analysis of a 63 kb bacterial artificial chromosome insert from the Wolbachia endosymbiont of the human filarial parasite Brugia malayi.	Int.J.Parasitol.	Ware, J., Moran, L., Foster, J., Posfai, J., Vincze, T., Guiliano, D., Blaxter, M., Eisen, J.and Slatko, B.
2001	Hybridization of High-Denisty Filter Arrays of a Brugia malayi BAC Library with Biotinylated Oligonucleotides and PCR Products.	BioTechniques	Foster, J.M., Kamal, I.H., Daub, J., Swan, M.C., Ingram, J.R., Ganatra, M., Ware, J., Guiliano, D., Aboobaker, A., Moran, L., Blaxter, M.and Slatko, B.E.
2000	Implementation of Automation in a Small-Scale DNA Sequencing Core Facility.	J.Biomolecular Techniques	Ware, J.L., Moran, L., Lin, C.-L.and Slatko, B.
2005	The Wolbachia Genome of Brugia malayi: Endosymbiont Evolution within a Human Pathogenic Nematode.	PLoS Biology	Foster, J., Ganatra, M., Kamal, Ibrahim, Ware, J., Makarova, K., Ivanova, N., Bhattacharyya, A., Kapatral, V., Kumar, S., Posfai, J., Vincze, T., Ingram, J., Moran, L., Lapidus, A., Omelchenko, M., Kyrpides, N., Ghedin, E., Wang, S., Goltsman, E., Joukov, V., Ostrovskaya, O., Tsukerman, K., Mazur, M., Comb, D., Koonin, E.and Slatko, B.
1996	Cloning of thermostable DNA polymerases from hyperthermophilic marine Archaea with emphasis on Thermococcus sp.9 degrees N-7 and mutations affecting 3'-5' exonuclease activity.	Proc Natl Acad Sci	Southworth, M.W., Kong, H., Kucera, R.B., Ware, J., Jannasch, H.W., and Perler, F.B.
1996	Thermostable Bst DNA polymerase I lacks a 3' fwdarw 5' proofreading exonuclease activity1.	Genetic Analysis Biomolecular Engineering	Aliotta, J.M., Pelletier, J.J., Ware, J.L., Moran, L.S., Benner, J.S., and Kong, H.
2015	Evolutionary and biogeographical patterns of barnacles from deep-sea hydrothermal vents.	Mol Ecol.	Herrera S, Watanabe H, Shank TM.
2014	Stable cell surface expression of GPI-anchored proteins, but not intracellular transport, depends on their fatty acid structure	Traffic	Janesh, N. Correa, I.R., Jr. and Watanabe, R.
1985	Nucleotide sequence of the PaeR7 restriction/modification system and partial characterization of its protein products.	Nucl.Acids Res.	Theriault, G., Roy, P.H., Howard, K.A., Benner, J.S., Brooks, J.S., Waters, A.F., and Gingeras, T.R.
2014	Identification of restriction-modification systems of Bifidobacterium animalis subsp. lactis CNCM I-2494 by SMRT sequencing and associated methylome analysis	PLoS One	O'Connell Motherway M, Watson D, Bottacini F, Clark TA, Roberts RJ, Korlach J, Garault P, Chervaux C, van Hylckama Vlieg JE, Smokvina T, van Sinderen D
1982	NdeI: a restriction endonuclease from Neisseria denitrificans which cleaves DNA at 5'-CATATG-3' sequences.	FEBS Lett.	Watson, R.J., Schildkraut, I., Qiang, B.Q., Martin, S.M., and Visentin, L.P.
2009	Site specific conjugation of fluoroprobes to the remodeled Fc N-glycans of monoclonal antibodies using mutant glycosyltransferases: application for cell surface antigen detection	Bioconjug. Chem.	Boeggeman, E., Ramakrishnan, B., Pasek, M., Manzoni, M., Puri, A., Loomis, K.H., Waybright, T.J., Qasba, P.K.	Glycobiology
2015	The complete methylome of Helicobacter pylori UM032	BMC Genomics	Lee, W.C., Anton, B.P., Wang, S., Baybayan, P., Singh, S., Ashby, M., Chua, E.G., Tay, C.Y., Thirriot, f., Loke, M.F., Goh, K.L., Marshall, B.J., Robert, R.J. and Vadivelu, J.
2014	Cofactor-Independent Phosphoglycerate Mutase from Nematodes Has Limited Druggability, as Revealed by Two High-Throughput Screens	PLoS Negl Trop Dis.	Crowther, G.J., Booker, M.L., He, M., Li, T., Raverdy, S., Novelli, J.F., He, P., Dale, N.R.G., Fife, A.M., Barker, R.H., Jr., Kramer, M.L., Van Voorhis, W.C., Carlow, C.K.S. and Wang, M-W.
2002	Acyclic and dideoxy teminator preferences denote divergent sugar recognition by archaeon and Taq DNA polymerases.	Nuc.Acids Res.	Gardner, A.F.and Jack, W.E.
2011	Biochemical Characterization of a Structure-Specific Resolving Enzyme from Sulfolobus Islandicus Rod-Shaped Virus 2.	PLoS ONE	Gardner, A.F., Guan, C.and Jack, W.E.
1999	Determinants of nucleotide sugar recognition in an archaeon DNA polymerase.	Nuc.Acids Res.	Gardner, A.F.and Jack, W.E.
2004	Comparative Kinetics of Nucleotide Analog Incorporation by Vent DNA Polymerase.	J.Biol.Chem.	Gardner, A.F., Joyce, C.M.and Jack, W.E.
1993	Characterization of DNA Polymerase from the Hyperthermophile Archaea Thermococcus litoralis.	J.Biol.Chem.	Kong, H., Kucera, R.B., and Jack, W.E.
1992	Intervening sequences in an Archaea DNA polymerase gene.	Proc.Natl.Acad.Sci.USA	Perler, F.B., Comb, D.G., Jack, W.E., Moran, L.S., Qiang, B., Kucera, R.B., Benner, J., Slatko, B.E., Nwankwo, D.O., Hempstead, S.K., Carlow, C.K.S.and Jannasch, H.
1992	Protein splicing removes intervening sequences in an archaea DNA polymerase.	Nucl.Acids Res.	Hodges, R.A., Perler, F.B., Noren, C.J., and Jack, W.E.
1994	Protein splicing elements: inteins and exteins - a definition of terms and recommended nomenclature.	Nucl.Acids Res.	Perler, F.B., Davis, E.O., Dean, G.E., Gimble, F.S., Jack, W.E., Neff, N., Noren, C.J., Thorner, J., and Belfort, M.
1994	Three-dimensional structure of the adenine-specific DNA methyltransferase M.Taq I in complex with the cofactor S-adenosylmethionine.	Proc.Natl.Acad.Sci.USA	Labahn, J., Granzin, J., Schluckebier, G., Robinson, D.P., Jack, W.E., Schildkraut, I., and Saenger, W.
2012	Polbase: a repository of biochemical, genetic and structural information about DNA polymerases.	Nucl.Acids Res.	Langhorst, B.W., Jack, W.E., Reha-Krantz, L.and Nichols, N.M.
2012	Polbase: a repository of biochemical, genetic and structural information about DNA polymerases	Nucleic Acids Res.	Langhorst, B.W., Jack. W.E., Reha-Krantz, L. and Nichols, N.M.
2014	Ordering of mutations in preinvasive disease stages of esophageal carcinogenesis	Nat Genet	Weaver JM, Ross-Innes CS, Shannon N, Lynch AG, Forshew T, Barbera M, Murtaza M, Ong CA, Lao-Sirieix P, Dunning MJ, Smith L, Smith ML, Anderson CL, Carvalho B, O'Donovan M, Underwood TJ, May AP, Grehan N, Hardwick R, Davies J, Oloumi A, Aparicio S, Caldas C, Eldridge MD, Edwards PA, Rosenfeld N, Tavaré S, Fitzgerald RC; OCCAMS Consortium
2009	Profiling the T-cell receptor beta-chain repertoire by massively parallel sequencing	Genome Res.	Freeman, J.D., Warren, R.L., Webb, J.R., Nelson, B.H. and Holt, R.A.
2015	A simple bridging flocculation assay for rapid, sensitive and stringent detection of gene specific DNA methylation	Sci Rep	Wee E., Ngo T., Trau M.	Epigenetics,DNA Enrichment
2016	Simple Isothermal Strategy for Multiplexed, Rapid, Sensitive, and Accurate miRNA Detection	ACS Sens	Wee E J H, Trau M,
2016	Mapping the sex determination locus in the hāpuku (Polyprion oxygeneios) using ddRAD sequencing.	BMC Genomics.	Brown JK, Taggart JB, Bekaert M, Wehner S, Palaiokostas C, Setiawan AN, Symonds JE, Penman DJ.
2016	Biosynthesis and Function of Modified Bases in Bacteria and Their Viruses.	Chemical Reviews	Weigele, P.W. and Raleigh, E. A.
2012	A terracotta bio-battery	Bioresour Technol	Ajayi, F.F., Weigele, P.R.
2010	Comparative genomic hybridization of Bifidobacterium longum strains reveals broad conservation of milk utilization genes in subsp. infantis	Appl. Environ. Microbiol.	LoCascio, R.G., Desai, P., Sela, D.A., Weimer, B., and Mills, D.A.
2007	Tasting Phenylthiocarbamide (PTC): A New Lab With an Old Flavor.	Am.Biol.Teacher	Merritt, R., Bierwort, L., Slatko, B., Weiner, M., Weiner, E., Ingram, J.and Sciarra, K.
2008	Kits and their unique role in molecular biology: a brief retrospective.	BioTechniques	Weiner, M.and Slatko, B.
2008	Tasting Phenylthiocarbamide (PTC): A New Lab With an Old Flavor.	Am.Biol.Teacher	Merritt, R., Bierwort, L., Slatko, B., Weiner, M., Weiner, E., Ingram, J.and Sciarra, K.
2009	Educational Outreach - Discover the Microbes Within!	BioTechniques	Weiner, M.P.and Slatko, B.(eds.)
2009	Educational Outreach - Give Students a Taste for Molecular Biology and Tasting PTC: A New Lab with an Old Flavor.	BioTechniques	Weiner, M.P.and Slatko, B.(eds.)
1998	Chemical display of thymine residues flipped out by DNA methyltransferases.	Nucl.Acids Res.	Serva, S., Weinhold, E., Roberts R.J.and Klimasauskas S.
2008	Identification of GATC- and CCGG-recognizing Type II REases and their putative specificity-determining positions using Scan2S--a novel motif scan algorithm with optional secondary structure constraints.	Proteins	Niv, M.Y., Skrabanek, L., Roberts, R.J., Scheraga, H.A.and Weinstein, H.
2009	Assessment of therapeutic efficacy and fate of engineered human mesenchymal stem cells for cancer therapy	Proc. Natl. Acad. Sci. USA	Sasportas, L.S., Kasmieh, R., Wakimoto, H., Hingtgen, S., van de Water, J.A., Mohapatra, G., Figueiredo, J.L., Martuza, R.L., Weissleder, R., Shah, K.
2009	Assessment of therapeutic efficacy and fate of engineered human mesenchymal stem cells for cancer therapy	Proc. Natl. Acad. Sci. USA	Sasportas, L.S., Kasmieh, R., Wakimoto, H., Hingtgen, S., van de Water, J.A., Mohapatra, G., Figueiredo, J.L., Martuza, R.L., Weissleder, R. and Shah, K.
2013	Ribosome profiling provides evidence that large noncoding RNAs do not encode proteins	Cell	Guttman M, Russell P, Ingolia NT, Weissman JS, Lander ES
2016	Training the Next Generation of Biomedical Investigators in Glycosciences.	J. Clin. Invest.	Agre, P., Bertozzi, C., Bissell, M., Campbell, K., Cummings, R., Desai, U., Estes, M., Flotte, T., Fogleman, G.,Gage, F., Ginsburg, D., Gordon, J.I., Hart, G., Hascall, V., Kiessling, L., Kornfeld, S., Lowe, J., Magnani, J., Mahal, L.K., Medzhitov, R., Roberts, R., Sackstein, R., Sarkar, R., Schnaar, R., Schwartz, N., Varki, A., Walt, D., Weissman, I.
2010	Design of a potent D-peptide HIV-1 entry inhibitor with a strong barrier to resistance	J. Virol.	Welch, B.D. et al.
2001	Recombinant human DNA (cytosine-5) methyltransferase.III.Allosteric control, reaction order, and influence of plasmid topology and triplet repeat length on methylation of the fragile X CGGCCG sequence.	J.Biol.Chem.	Bacolla, A., Pradhan, S., Larson, J.E., Roberts, R.J.and Wells, R.D.
1999	Human DNA (Cytosine-5) Methyltransferase.II.steady-state kinetics reveal allostericactivation by methylated DNA.	J.Biol.Chem.	Bacolla, A., Pradhan, S., Roberts, R.J.and Wells, R.D.
1999	Recombinant Human DNA (Cytosine-5) Methyltransferase.I.expression, purification, and comparison of de novo and maintenance.	J.Biol.Chem.	Pradhan, S., Bacolla, A., Wells, R.D.and Roberts, R.J.
2007	Dynamic developmental elaboration of N-linked glycan complexity in the Drosophila melanogaster embryo	J. Biol. Chem.	Aoki, K., Perlman, M., Lim, J.M., Cantu, R., Wells, L., Tiemeyer, M.
2014	Biomimetic Magnetite Formation From Biocombinatorial Approaches to Mineralization Effects	Langmuir	Baumgartner J, Carillo MA, Eckes KM, Werner P, Faivre D.	Phage Display
2007	Widespread lateral gene transfer from intracellular bacteria to multicellular eukaryotes.	Science	Hotopp, J.C., Clark, M.E., Oliveira, D.C., Foster, J.M., Fischer, P., Torres, M.C., Giebel, J.D., Kumar, N., Ishmael, N., Wang, S., Ingram, J., Nene, R.V., Shepard, J., Tomkins, J., Richards, S., Spiro, D.J., Ghedin, E., Slatko, B., Tettelin, H.and Werren, J.H.
1988	McrA and McrB restriction phenotypes of some E.coli strains and implications for gene cloning.	Nucl.Acids Res.	Raleigh, E.A., Murray, N.E., Revel, H., Blumenthal, R.M., Westaway, D., Reith, A.D., Rigby, P.W.J., Elhai, J., and Hanahan, D.
2007	Feedback inhibition of calcineurin and Ras by a dual inhibitory protein Carabin.	Nature	Pan, F., Sun, L., Kardian, D., Whartenby, K., Pardoll, D.and Liu, J.O.
2008	Two-dimensional gel-based approaches for the assessment of N-Linked and O-GlcNAc glycosylation in human and simian immunodeficiency viruses	Proteomics	Graham, D.R., Mitsak, M.J., Elliott, S.T., Chen, D., Whelan, S.A., Hart, G.W., Van Eyk, J.E.	Glycobiology
1999	A Mutant of BamHI Restriction Endonuclease which Requires N6-Methyladenine for Cleavage.	J.Mol.Biol.	Whitaker, R.D., Dorner, L.F.and Schildkraut, I.
1999	Genetic Analysis of the Base-specific Contacts of BamHI Restriction Endonuclease.	J.Mol.Biol.	Dorner, L.F., Bitinaite, J., Whitaker, R.D.and Schildkraut, I.
2006	RecJ exonuclease: substrates, products and interaction with SSB.	NAR	Han, E.S., Cooper, D.L., Persky, N.S., Sutera, V.A.Jr., Whitaker, R.D., Montello, M.L.and Lovett, S.T.
2013	Extensively duplicated and transcriptionally active recent lateral gene transfer from a bacterial Wolbachia endosymbiont to its host filarial nematode Brugia malayi	BMC Genomics	Ionnidis, P., Johnston, K.L., Riley, D.R., Kumar, N., White, J.R., Olarte, K.T., Ott, S., Tallon, L.J., Foster, J.M., Taylor, M.J. and Dunning-Hotopp, J.C.
2015	Hepatic Stellate Cell Transdifferentiation Involves Genome-Wide Remodeling of the DNA Methylation Landscape	J Hepatol	Page A., Paoli P., Salvador E., White S., French J., Mann J.	Epigenetics
2015	RAD sequencing and genomic simulations resolve hybrid origins within North American Canis.	Bio Lett.	Rutledge LY, Devillard S, Boone JQ, Hohenlohe PA, White BN.
2014	Protein-protein interactions leading to the recruitment of the host DNA sliding clamp by the hyperthermophilic archaeal virus SIRV2	J Virol	Gardner AF, Bell SD, White MF, Prangishvili D, Krupovic M
2011	Fluorescent peptides highlight peripheral nerves during surgery in mice	Nat. Biotechnol.	Whitney, M.A. et al.
2004	A genome sequence survey of the filarial nematode Brugia malayi: repeats, gene discovery, and comparative genomics.	Mol.Biochem.Parasitol.	Whitton, C., Daub, J., Quail, M., Hall, N., Foster, J., Ware, J., Ganatra, M., Slatko, B., Barrell, B.and Blaxter, M.
2004	Construction of BAC libraries from the parasitic nematode Brugia malayi and physical mapping of the genome of its Wolbachia endosymbiont.	Int.J.Parasitol.	Foster, J.M., Kumar, S., Ganatra, M.B., Kamal, I.H., Ware, J., Ingram, J., Pope-Chappell, J., Guiliano, D., Whitton, C., Daub, J., Blaxter, M.L.and Slatko, B.E.
2004	The bacterial catalase from filarial DNA preparations derives from common pseudomonad contaminants and not from Wolbachia endosymbionts.	Parasitol.Res.	Foster, J., Baldo, L., Blaxter, M., Hendle-Duhrsen, K., Whitton, C., Slatko, B.and Bandi, C
2014	Identification and Characterization of a Proteolytically Primed Form of the Murine Coronavirus Spike Proteins after Fusion with the Target Cell	J Virol	Wicht O, Burkard C, de Haan CA, van Kuppeveld FJ, Rottier PJ, Bosch BJ	Glycobiology
2010	Revolutionizing membrane protein overexpression in bacteria	Micro. Biotech.	Schlegel, S., Klepsch, M., Gialama, D., Wickström, D., Slotboom, D.J. and de Gier, J.
2004	Human Smp3p adds a fourth mannose to yeast and human glycosylphosphatidylinositol precursors in vivo.	J.Biol.Chem.	Taron, B.W., Colussi, P.A., Wiedman, J.M., Orlean, P.and Taron, C.H.
2006	In vivo characterization of the GPI assembly defect in yeast mcd4-174 mutants and bypass of the Mcd4p-dependent step in delta mcd4 cells.	FEMS Yeast Res.	Wiedman, J.M., Fabre, A-L., Taron, B.W., Taron, C.H.and Orlean, P.
2007	In Vivo characterization of the GPI assembly defect in yeast mcd4-174 mutants and bypass of the Mcd4-p-dependent step in mcd4∆ cells.	FEMS Yeast Res.	Wiedman, J.M., Fabre, A-L., Taron, B.W., Taron, C.H.and Orlean, P.
2008	Tuning Escherichia coli for membrane protein overexpression	PNAS	Wagner, S., Klepsch, M., Schlegel, S., Appel, A., Draheim, R., Tarry, M., Hö, M., van Wijk, K.J., Slotboom, D.J., Persson, J.O. and de Gier, J.
2013	The other face of restriction: modification-dependent enzymes	Nucleic Acids Research	Wil A. M. Loenen, Elisabeth A. Raleigh
1995	Typing marine vent thermophiles by DNA polymerase restriction fragement length polymorphisms.	Archaea A Laboratory Manual	Perler, F.B., Southworth, M.W., Wilbur, D.G., and Wallace, D.
1998	Determination of Certain Agarose-Immobilized Ligands by Use of Perchloric Acid.	Biochromatography	Wilkie, S.D.and Landry, D.
2016	Sensitive Detection of Plasmodium vivax Using a High-Throughput, Colourimetric Loop Mediated Isothermal Amplification (HtLAMP) Platform: A Potential Novel Tool for Malaria Elimination.	PLoS Negl Trop Dis	Britton, S., Cheng, Q., Grigg, M.J., Poole, C.B., Pasay, C., William, T., Fornace, K., Anstey, N.M., Sutherland, C.J., Drakeley, C. and McCarthy, J.S.
2000	The filarial genome project: analysis of the nuclear, mitochondrial and endosymbiont genomes of Brugia malayi.	Int.J.Parasitol.	Williams, S.A., Lizotte-Waniewski, M.R., Foster, J., Guiliano, D., Daub, J., Scott, A.L., Slatko, B.and Blaxter, M.L.
1999	Chemiluminescent Detection of Sequential DNA Hybridizations to High-Density, Filter-Arrayed cDNA Libraries: A Subtraction Method for Novel Gene Discovery.	BioTechniques	Guiliano, D., Ganatra, M., Ware, J., Parrot, J., Daub, J., Moran, L., Brennecke, H., Foster, J.M., Supali, T., Blaxter, M., Scott, A.L., Williams, S.A.and Slatko, B.E.
2010	A functional NR4A nuclear receptor DNA-binding domain is required for organ development in Caenorhabditis elegans.	Genesis	Heard, M., Maina, C.V., Morehead, B.E., Hoener, M.C., Nguyen, T.Q., Williams, C.C., Rowan, B.G.and Gissendanner, C.R.
1993	Brugia malayi and Brugia pahangi: synthetic biotin labeling of oligonucleotide probes for use in species-specific detection assays.	Exp.Parasitol.	Williams, S.A., Poole, C.B., Landry, D., Glover, J., and McReynolds, L.A.
1993	Workshop of DNA Probes and PCR for Detection of Filarial Parasies in Vectors		Williams, S.A.
1996	Genes expressed in Brugia malayi infective third stage larvae.	Mol.Biochem.Parasitol.	Blaxter, M.L., Raghavan, N., Ghosh, I., Guiliano, D., Lu, W., Williams, S.A., Slatko, B.and Scott, A.L.
1986	Sequencing in the Fast Lane: A Rapid Protocol for [a-35S] dATP Dideoxy DNA Sequencing.	BioTechniques	Williams, S.A., Slatko, B.E., Moran, L.S., and DeSimone, S.M.
1986	Cloning and comparison of repeated DNA sequences from the human filarial parasite Brugia malayi and the animal parasite Brugia pahangi.	Proc.Natl.Acad.Sci.USA	McReynolds, L.A., DeSimone, S.M., and Williams, S.A.
1987	Highly Repeated DNA Sequences as Species-specific Probes for Brugia.	Parasitology Today	Piessens, W.F., McReynolds, L.A.and Williams, S.A.
1987	The Use of DNA Sequencing Reactions as Probes for Southern Blots, Dot Blots and Colony Hydridizations.	BioTechniques	Card, C.O., Williams, S.A., Moran, L.S., Poole, C.B., and Slatko, B.E.
1987	Dirofilaria immitis: Genomic Complexity and Characterication of a Structural Gene.	Molecular Paradigms for Eradicating Helminthic Parasites	Maina, C.V., Grandea, A.G.I., Le, T.K.T., Nur, A., Williams, S.A., and McReynolds, L.A.
1991	Filarial DNA probes in Jakarta.	Parasitol.Today	McReynolds, L.A., Poole, C.B., and Williams, S.A.
1988	Species-specific oligonucleotide probes for the identification of human filarial parasites.	Mol.Biochem.Parasitol.	Williams, S.A., DeSimone, S.M., and McReynolds, L.A.
2009	Comprehensive mapping of long range interactions reveals folding principles of the human genome	Science	Lieberman-Aiden E., van Berkum N., Williams L., Imakaev M., Ragoczy T., Telling A., Amit I., Lajoie B., Sabo P., Dorschner M., Sandstrom R., Bernstein B., BenderM. A., Groudine M., Gnirke A., Stamatoyannopoulos J., Mirny L., Lander E., Dekker J.	Epigenetics
2002	Structure of a tRNA Repair Enzyme and Molecular Biology Workhorse: T4 Polynucleotide Kinase.	Structure	Galburt, E.A., Pelletier, J., Wilson, G.and Stoddard, B.L.
2011	Crystallization and preliminary crystallographic analysis of the Type IIL restriction enzyme MmeI in complex with DNA.	Acta Crystallogr.F.Structural biology and crystallization communications	Callahan, S.J., Morgan, R.D., Jain, R., Townson, S.A., Wilson, G.,G.Roberts, R.J.and Aggarwal, A.K.
2003	Purification and characterisation of a novel DNA methyltransferase, M.AhdI	Nucleic Acids Research	Marks, P., McGeehan, J., Wilson, G., Errington, N. and Kneale, G.
1998	Sequence Comparison of the EcoHK31I and EaeI Restriction-Modification Systems Suggests an Intergenic Transfer of Genetic Material.	Biol.Chem.	Lee, K-F, Shaw, P-C, Picone, S.J., Wilson, G.G.and Lunnen, K.D.
1998	Crystal Structure of Restriction Endonuclease BgII Bound to its Interrupted DNA Recognition Sequence.	EMBO J.	Newman, M., Lunnen, K., Wilson, G., Greci, J., Schildkraut, I., Phillips, S.E.
2013	Restriction endonuclease TseI cleaves A:A and T:T mismatches in CAG and CTG repeats	Nucleic Acids Res	Ma L, Chen K, Clarke DJ, Nortcliffe CP, Wilson GG, Edwardson JM, Morton AJ, Jones AC, Dryden DT
2013	Highlights of the DNA cutters: a short history of the restriction enzymes	Nucleic Acids Research	Wil A. M. Loenen, David T. F. Dryden, Elisabeth A. Raleigh, Geoffrey G. Wilson, and Noreen E. Murray
2006	A genetic dissection of the LlaJI restriction cassette reveals insights on a novel bacteriophage resistance system.	BMC Microbiol.	O'Driscoll, J., Heiter, D.F., Wilson, G.G., Fitzgerald, G.F., Roberts, R.and van Sinderen, D.
2016	AnnoTALE: bioinformatics tools for identification, annotation, and nomenclature of TALEs from Xanthomonas genomic sequences.	Sci Rep.	Grau, J., Reschke, M., Erkes, A., Streubel, J., Morgan, R.D., Wilson, G.G., Koebnik, R. and Boch, J.
2016	Type II restriction endonucleases - a historical perspective and more.	Nucleic Acids Res	Pingoud, A., Wilson, G.G. and Wende, W.
2016	Perpetuating the homing endonuclease life cycle: identification of mutations that modulate and change I-TevI cleavage preference.	Nucleic Acids Res.	Roy, A.C., Wilson, G.G. and Edgell, D.R.
2016	Hydroxymethyluracil modifications enhance the flexibility and hydrophilicity of double-stranded DNA.	Nucleic acids research	Carson, S., Wilson, J., Aksimentiev, A., Weigele, P. R., & Wanunu, M.
2016	DNA recognition by the SwaI restriction endonuclease involves unusual distortion of an 8 base pair A: T-rich target.	Nucleic Acids Res.	Shen, B.W., Heiter, D.F., Lunnen, K.D., Wilson, G.G. and Stoddard, B.L.
2016	Perpetuating the homing endonuclease life cycle: identification of mutations that modulate and change I-TevI cleavage preference	Nucleic Acids Res.	Roy, A.C., Wilson, G.G. and Edgell, D.R.
2014	Type I restriction enzymes and their relatives	Nucleic Acids Res	Loenen WA, Dryden DT, Raleigh EA, Wilson GG
2014	Type I restriction enzymes and their relatives	Nucleic Acids Research	Wil A. M. Loenen, David T. F. Dryden, Elisabeth A. Raleigh, Geoffrey G. Wilson
2014	Type II restriction endonucleases-a historical perspective and more	Nucleic Acids Res	Pingoud A, Wilson GG, Wende W
2014	Highlights of the DNA cutters: a short history of the restriction enzymes	Nucleic Acids Res	Loenen WA, Dryden DT, Raleigh EA, Wilson GG, Murray NE
2005	Measurement of the contributions of 1-D and 3-D pathways to the translocation of a protein along DNA.	Proc.Natl.Acad.Sci.USA	Gowers, D.M., Wilson, G.G.and Halford, S.
2005	Site-specific DNA-nicking mutants of the heterodimeric restriction endonuclease R.BbvCI.	J.Mol.Biol.	Heiter, D.F., Lunnen, K.D.and Wilson, G.G.
2005	Characterization of the Type III restriction endonuclease PstII from Providencia stuartii.	Nucl.Acids Res.	Sears, A., Peakman, L.J., Wilson, G.G.and Szczelkun, M.D.
2005	Cleavage of individual DNA strands by the different subunits of the heterodimeric restriction endonuclease BbvCI.	J.Mol.Biol.	Bellamy, S.R.W., Milsom, S.E., Scott, D.J., Daniels, L.E., Wilson, G.G.and Halford, S.E.
1995	Cloning and expression of the NaeI restriction endonuclease-encoding gene and sequence analysis of the NaeI restriction-modification system.	Gene	Taron, C.H., Van Cott, E.M., Wilson, G.G., Moran, L.S., Slatko, B.E., Hornstra, L.J., Benner, J.S., Kucera, R.B., and Guthrie, E.P.
1995	Molecular Characterization of a Cyclosporin A-Insensitive Cyclophilin from the Parasitic Nematode Brugia malayi.	Biochemistry	Page, A.P., Landry, D., Wilson, G.G., and Carlow, C.K.S.
1993	Cloning, sequencing and overexpressing the NaeI restriction endonuclease gene from Nocardia aerocolonigenes	J Cell Biochem	Taron, C.H., Van Cott, E.M., Wilson, G.G., Moran, L.S., Slatko, B.E., Hornstra, L.J., Benner, J.S., Kucera, R.B. and Guthrie, E.P.
1996	Cloning, expression and sequence analysis of the SphI restriction-modification system.	Gene	Guthrie, E.P., Quinton-Jager, T., Moran, L.S., Slatko, B.E., Kucera, R.B., Benner, J.S., Wilson, G.G., and Brooks, J.E.
1986	Escherichia coli K-12 restricts DNA containing 5-methylcytosine.	Proc.Natl.Acad.Sci.USA	Raleigh, E.A., and Wilson, G.
1986	Cloning the DdeI restriction-modification system using a two-step method.	Nucl.Acids Res.	Howard, K.A., Card, C., Benner, J.S., Callahan, H.L., Maunus, R., Silber, K., Wilson, G., and Brooks, J.E.
1987	N4-Methylcytosine as a minor base in bacterial DNA.	J.Bacteriol.	Ehrlich, M., Wilson, G.G., Kenneth, C.K., and Gehrke, C.W.
1987	Cloning of two type II methylase genes that recognise asymmetric nucleotide sequences: FokI and HgaI.	Mol.Gen.Genet.	Nwankwo, D., and Wilson, G.
1987	Cloning, sequencing and expression of the TaqI restriction-modification system.	Nucl.Acids Res.	Slatko, B.E., Benner, J.S., Jager-Quinton, T., Moran, L.S., Simcox, T.G., VanCott, E.M., and Wilson, G.G.
1991	Organization of restriction-modification systems.	Nucl.Acids Res.	Wilson, G.G.
1991	Restriction and Modification Systems.	Ann.Rev.Genet.	Wilson, G.G., and Murray, N.E.
1992	The corrected nucleotide sequences of the TaqI restriction and modification enzymes reveal a thirteen-codon overlap.	Gene	Barany, F., Slatko, B., Danzitz, M., Cowburn, D., Schildkraut, I., and Wilson, G.G.
1992	Amino acid sequence arrangements of DNA-methyltransferases.	Methods Enzymol.	Wilson, G.G.
1992	Characterization of Type II DNA-Methyltransferases.	Methods Enzymol.	Landry, D., Barsomian, J.M., Feehery, G.R., and Wilson, G.G.
1994	Cloning, analysis and expression of the HindIII R-M-encoding genes.	Gene	Nwankwo, D.O., Moran, L.S., Slatko, B.E., Waite-Rees, P.A., Dorner, L.F., Benner, J.S., and Wilson, G.G.
1994	Characterization of BcgI, a new kind of restriction-modification system.	J.Biol.Chem.	Kong, H., Roemer, S.E., Waite-Rees, P.A., Benner, J.S., Wilson, G.G., and Nwankwo, D.O.
1994	Organization and sequence of the SalI restriction-modification system.	Gene	Rodicio, M.R., Quinton-Jager, T., Moran, L.S., Slatko, B.E., and Wilson, G.G.
1994	Ligand-induced conformational states of the cytosine-specific DNA methyltransferase M.HgaI-2.	J.Mol.Biol.	Baldwin, G.S., Kelly, S.M., Price, N.C., Wilson, G.G., Connolly, B.A., Artymiuk, P.J., and Hornby, D.P.
1994	Organization and sequence of the HpaII restriction-modification system and adjacent genes.	Gene	Kulakauskas, S., Barsomian, J.M., Lubys, A., Roberts, R.J., and Wilson, G.G.
1985	Nuclear and Mitochondrial DNA of the Primate Malarial Parasite Plasmodium Knowlesi.	Mol.Biochem.Parasitol.	Williamson, D.H., Wilson, R.J., Bates, P.A., McCready, S., Perler, F., and Qiang, B.Q.
1990	Cloning and characterization of the HpaII methylase gene.	Nucl.Acids Res.	Card, C.O., Wilson, G.G., Weule, K., Hasapes, J., Kiss, A., and Roberts, R.J.
1990	Cloning, characterization, and expression in Escherichia coli of the gene coding for the CpG DNA methylase from Spiroplasma sp.strain MQ1(M.SssI).	Nucl.Acids Res.	Renbaum, P., Abrahamove, D., Fainsod, A., Wilson, G.G., Rottem, S., and Razin, A.
1990	Cloning and Characterization of the SphI restriction modification system from Streptomyces phaeochromogenes	J Cell Biochem	Brooks, J.E., Sznyter, L., Vaccaro, C., Arnaud, M., Jager-Quinton, T., Wilson, G., Moran, L., Slatko, B., Bernan, V.
1988	Cloned restriction-modification systems - a review.	Gene	Wilson, G.G.
1988	Cloning and analysis of the HaeIII and HaeII methyltransferase genes.	Gene	Slatko, B.E., Croft, R., Moran, L.S., and Wilson, G.G.
1988	Cloning Type II restriction and modification genes.	Gene	Lunnen, K.D., Barsomian, J.M., Camp, R.R., Card, C.O., Chen, S.Z., Croft, R., Looney, M.C., Meda, M.M., Moran, L.S., Nwankwo, D.O., Slatko, B.E., Van Cott, E.M., and Wilson, G.G.
1988	Cloning the FnuDI, NaeI, NcoI and XbaI restriction-modification systems.	Gene	Van Cott, E.M., and Wilson, G.G.
1988	Cloning and sequencing the HinfI restriction and modification genes.	Gene	Chandrasegaran, S., Lunnen, K.D., Smith, H.O., and Wilson, G.G.
1988	Cloning and expression of the MspI restriction and modification genes.	Gene	Nwankwo, D.O., and Wilson, G.G.
1988	Cloning of the HhaI and HinPI restriction-modification systems.	Gene	Barsomian, J.M., Card, C.O., and Wilson, G.G.
1988	Cloning, purification and characterization of the HincII and HindII methyltransferases from Haemophilus influenzae.	Gene	Rees, P.A., Nwankwo, D.O., Wilson, G.G., and Benner, J.S.
1988	Type II restriction-modification systems.	Trends in Genetics	Wilson, G.G.
1988	Cloning and characterization of the BamHI restriction modification system	Gene	Brooks, J.E., Benner, J.S., Silber, K.R., Heiter, D.F., Sznyter, L.A., Jager-Quinton, T., Wilson, G.G., Moran, L.S., Slatko, B.E., Nwankwo, D.O.
1989	Characterization and cloning of MwoI (GCN7GC), a new type-II restriction-modification system from Methanobacterium wolfei.	Gene	Lunnen, K.D., Morgan, R.D., Timan, C.J., Krzycki, J.A., Reeve, J.N., and Wilson, G.G.
1989	M.FokI methylates adenine in both strands of its asymmetric recognition sequence.	Gene	Landry, D., Looney, M.C., Feehery, G.R., Slatko, B.E., Jack, W.E., Schildkraut, I., and Wilson, G.G.
1989	Nucleotide sequence of the FokI restriction-modification system: separate strand-specificity domains in the methyltransferase.	Gene	Looney, M.C., Moran, L.S., Jack, W.E., Feehery, G.R., Benner, J.S., Slatko, B.E., and Wilson, G.G.
1989	Cloning the BamHI restriction modification system.	Nucl.Acids Res.	Brooks, J.E., Benner, J.S., Heiter, D.F., Silber, K.R., Sznyter, L.A., Jager-Quinton, T., Moran, L.S., Slatko, B.E., Wilson, G.G., and Nwankwo, D.O.
1989	Introduction of prokaryotic HhaI DNA methyltransferase alters the phenotype of 3T3 cells.	Proc.Am.Assoc.Cancer Res.	Herman, J., Nelkin, B., Mabry, M., Wilson, G., and Baylin, S.
2012	Restriction enzymes in Microbiology Biotechnology and Biochemistry	Proceedings of the 2012 Nicaraguan Biotechnology Conference	Wilson, G.G., Wang, H., Heiter, D.F., and Lunnen, K.D.
2012	Restriction Enzymes in Microbiology, Biotechnology and Biochemistry	Encuentro	Geoffrey G. Wilson, Hua Wang, Daniel F. Heiter, Keith D. Lunnen
2017	DNA recognition by the SwaI restriction endonuclease involves unusual distortion of an 8 base pair A:T-rich target	Nucl. Acids Res.	Shen, B.W., Heiter, D.F., Lunnen, K.D., Wilson, G.G., Stoddard, B.L.
2009	ChIP-seq: Using high-throughput sequencing to discover protein-DNA interactions	Methods	Schmidt, D., Wilson, M.D. Spyrou, C., Brown, G.D., Hadfield, J. and Odom, D.T.
2013	Hedgehog Signaling Regulates MyoD Expression and Activity	J Biol Chem	Anastassia Voronova Erin Coyne, Ashraf Al Madhoun, Joel V. Fair, Neven Bosiljcic, Catherine St-Louis, Grace Li, Sherry Thurig, Valerie A. Wallace, Nadine Wiper-Bergeron, and Ilona S. Skerjanc
2014	Establishment of a CpG island microarray for analyses of genome-wide DNA methylation in Chinese hamster ovary cells	Appl Microbiol Biotechnol	Wippermann A, Klausing S, Rupp O, Albaum SP, Büntemeyer H, Noll T, Hoffrogge R
2014	Impact of a transposon insertion in phzF2 on the specialized metabolite production and interkingdom	J Bacteriol	Phelan VV, Moree WJ, Aguilar J, Cornett DS, Koumoutsi A, Noble SM, Pogliano K, Guerrero CA, Dorrestein PC	Gibson Assembly®
2014	Engineering hydrogen gas production from formate in a hyperthermophile by heterologous production of an 18-subunit membrane-bound complex	J Biol Chem	Lipscomb GL, Schut GJ, Thorgersen MP, Nixon WJ, Kelly RM, Adams MW	Gibson Assembly®
2014	Prospective identification of parasitic sequences in phage display screens	Nucleic Acids Res	Matochko WL, Cory Li S, Tang SK, Derda R	Phage Display
1999	Genomics and the biology of parasites.	BioEssays	Johnston, D.A., Blaxter, M.L., Degrave, W.M., Foster, J., Ivens, A.C.and Melville, S.E.
2002	Arm-site binding by lambda -integrase: solution structure and functional characterization of its amino-terminal domain	Proc. Natl. Acad. Sci. USA	Wojciak, J.M., et al.
2002	Alkaline phosphatase from the hyperthermophilic bacterium T. maritima requires cobalt for activity	Protein Sci	Wojciechowski CL, Cardia JP, and Kantrowitz ER.
2006	LT CI, a novel chymotrypsin inhibitor of the potato I family from the earthworm Lumbricus terrestris. Purification, cDNA cloning, and expression	Comp. Biochem. Physiol B. Biochem. Mol. Biol.	Wojtaszek, J., et al.
1999	The Wolbachia Genome Consortium.	Microbiol.and Comparative Genomics	Slatko, B.E., O'Neill, S.L., Scott, A.L., Werren, J.L., Blaxter, M.L.and the Wolbachia genome Consortium
2001	Information access.Building a "GenBank" of the published literature.	Science	Roberts, R.J., Varmus, H.D., Ashburner, M., Brown, P.O., Eisen, M.B., Khosla, C., Kirschner, M., Nusse, R., Scott, M.and Wold, B.
2011	Hypomethylation of a LINE-1 Promoter Activates an Alternate Transcript of the MET Oncogene in Bladders with Cancer	PLoS Genet.	Wolff, E.M. et al.	Epigenetics
1998	Discovery and Uses of Novel Glycosidases	Techniques in Glycobiology	Wong-Madden, S.T., Landry, D., and Guthrie, E.P.
1995	Purification and characterization of novel glycosidases from the bacterial genus Xanthomonas.	Glycobiology	Wong-Madden, S.T., and Landry, D.
1997	Jak1 kinase is required for cell migrations and anterior specification in zebrafish embryos.	Proc.Natl.Acad.Sci.USA	Conway, G., Margoliath, A., Wong-Madden, S., Roberts, R.J., and Gilbert, W.
1997	Discovery and Uses of Novel Glycosidases	Techniques in Glycobiology	Wong-Madden, S.T., Landry, D., and Guthrie, E.P.	Glycobiology
2008	Direct site-selective covalent protein immobilization catalyzed by a phosphopantetheinyl transferase	J. Am. Chem. Soc.	Wong L. S. et al.
2016	Identification of Ecdysone Hormone Receptor Agonists as a Therapeutic Approach for Treating Filarial Infections.	PLoS Negl Trop Dis.	Mhashilkar, A.S., Vankayala, S.L., Liu, C., Kearns, F., Mehrotra, P., Tzertzinis, G., Palli, S.R., Woodcock, H.L. and Unnaschm, T.R.
1991	Nomenclature relating to restriction of modified DNA in Escherichia coli.	J.Bacteriol.	Raleigh, E.A., Benner, J., Bloom, F., Braymer, H.D., DeCruz, E., Dharmalingam, K., Heitman, J., Noyer-Weidner, M., Piekarowicz, A., Kretz, P.L., Short, J.M., and Woodcock, D.
2015	Clinical Evaluation of a Loop-Mediated Isothermal Amplification (LAMP) Assay for Rapid Detection of Neisseria meningitidis in Cerebrospinal Fluid.	PLoS One	DoKyung Lee, Eun Jin Kim, Paul E Kilgore, Soon Ae Kim, Hideyuki Takahashi, Makoto Ohnishi, Dang Duc Anh, Bai Qing Dong, Jung Soo Kim, Jun Tomono, Shigehiko Miyamoto, Tsugunori Notomi, Dong Wook Kim, Mitsuko Seki	Isothermal Amplification
2009	Genetic identification of nascent peptides that induce ribosome stalling	J. Biol. Chem.	Tanner, D., Cariello, D., Woolstenhulme, C., Broadbent, M. and Buskirk, A.
2009	Advances in bioluminescence imaging of live animal models	Curr Opin Biotechnol	Dothager, R., Flentie, K., Moss, B., Pan, M.H., Kesarwala, A., Piwnica-Worms, D.
2009	Advances in bioluminescence imaging of live animal models	Curr Opin Biotechnol.	Dothager, R., Flentie, K., Moss, B., Pan, M.H., Kesarwala, A. and Piwnica-Worms, D.
2006	Evidence supporting a cisi-enedio-based mechanism for Pyrococcus furiousus phophoglucose isomerase.	J Mol Biol.	Berrisford, J.M., Hounslow, A.M., Akerboom, J., Hagen, W.R., Brouns, S.J., van der Oost, J., Murray, I.A., Michael Blackburn, G., Waltho, J.P., Rice, D.W.and Baker, P.J.
1997	The Mycobacterium xenopi GyrA Protein Splicing Element: Characterization of a Minimal Intein.	J.Bacteriol.	Telenti, A., Southworth, M., Alcaide, F., Aauglat, S., Jacobs Jr., W.R., and Perler, F.B.
2016	Plasmid-based one-pot saturation mutagenesis	Nature Methods	Wrenbeck E.E., Klesmith J.R., Stapleton J.A., Adeniran A., Tyo K.E., & Whitehead T.A
1999	The kinetic mechanism of EcoRI endonuclease.	J.Biol.Chem.	Wright, D.J., Jack, W.E.and Modrich P.
2014	G-CSF does not influence C2C12 myogenesis despite receptor expression in healthy and dystrophic skeletal muscle	Front Physiol	Wright CR, Brown EL, Della-Gatta PA, Ward AC, Lynch GS, Russell AP	Glycobiology
1992	Transmission-blocking antibodies recognize microfilarial chitinase in brugian lymphatic filariasis.	Proc.Natl.Acad.Sci.USA	Fuhrman, J.A., Lane, W.S., Smith, R.F., Piessens, W.F., and Perler, F.B.
2012	Near-infrared fluorescence imaging of mammalian cells and xenograft tumors with SNAP-tag	PLoS ONE	Gong, H. wt al.
2001	Crystal structure of a phosphorylated Smad2. Recognition of phosphoserine by the MH2 domain and insights on Smad function in TGF-beta signaling	Mol Cell.	Wu, J.W., et al.
2013	Selection of a Mimotope Peptide of S-adenosyl-l-homocysteine and Its Application in Immunoassays	Molecules	Wu C. and Tzertzinis G.
2013	Interdomain lateral gene transfer of an essential ferrochelatase gene in human parasitic nematodes	Proc. Nat. Acad. Sci.	Wu, B., Novelli, J., Jiang, D., Dailey, H.A., Landmann, F., Ford, L., Taylor, M.J., Carlow, C.K.S., Kumar, S., Foster, J.M. and Slatko, B.E.
	Selection of a mimotope peptide of S-adenosyl-l-homocysteine and its application in immunoassays	Molecules	Wu, C. and Tzertzinis, G.	Phage Display
2016	Reminder to deposit DNA sequences	Science	Blaxter, M., Danchin, A., Savakis, B., Fukami-Kobayashi, K., Kurokawa, K., Sugano, S., Roberts, R.J., Salzberg, S.L. and Wu, C.I.
2016	De novo SNP discovery and genetic linkage mapping in poplar using restriction site associated DNA and whole-genome sequencing technologies.	BMC Genomics	Mousavi M, Tong C, Liu F, Tao S, Wu J, Li H, Shi J.
2010	Lipoprotein biosynthesis as a target for anti-Wolbachia treatment of filarial nematodes.		Johnston, K.L., Wu, B., Guimaraes, A., Ford, L.Slatko, B.E.and Taylor, M.J.
2010	Anti-tumor effects of a novel chimeric peptide on S180 and H22 xenografts bearing nude mice	Peptides	Wu, D. et al.
2010	Identification of a new peptide for fibrosarcoma tumor targeting and imaging in vivo	J. Biomed. Biotechnol.	Wu, C.C. et al.
2010	Endosymbiont DNA in endobacteria-free filarial nematodes indicates ancient horizontal genetic transfer.	PLoS ONE	McNulty, S.N., Foster, J.M., Mitreva, M., Dunning-Hotopp, J.C., Martin, J., Fischer, K., Wu, B., Davis, P.J., Kumar, S., Brattig, N.W., Slatko, B.E., Weil, G.J.and Fischer, P.U.
2012	Rapid incorporation kinetics and improved fidelity of a novel class of 3'-OH unblocked reversible terminators	Nucleic Acids Res.	Gardner, A.F., Wang, J., Wu, W., Karouby, J., Li, H., Stupi, B.P., Jack, W.E., Hersh, M.N. and Metzker, M.L.
2007	Fusion of Gaussia luciferase to an engineered anti-carcinoembryonic antigen (CEA) antibody for in vivo optical imaging	Mol. Imaging Biol.	Venisnik, K.M., Olafsen, T., Gambhir, S.S., Wu, A.M.
2007	Fusion of Gaussia luciferase to an engineered anti-carcinoembryonic antigen (CEA) antibody for in vivo optical imaging	Mol. Imaging Biol.	Venisnik, K.M., Olafsen, T., Gambhir, S.S. and Wu, A.M
2017	High-throughput biochemical profiling reveals sequence determinants of dCas9 off-target binding and unbinding	PNAS	Evan A. Boyle, Johan O.L. Andreasson, Lauren M. Chircus, Samuel H. Sternberg, Michelle J. Wu, Chantal K. Guegler, Jennifer A. Doudna, and William J. Greenleaf
2009	Wolbachia lipoprotein stimulates innate and adaptive immunity through toll-like receptors 2 and 6 (TLR2/6) to induce disease manifestations of filariasis.	J Biol Chem.	Turner, J.D., Langley, R.S., Johnston, K.L., Gentil, K., Ford, L., Wu, B., Graham, M., Sharpley, F., Slatko, B., Pearlman, E.and Taylor, M.J.
2009	The Heme Biosynthetic Pathway of the Obligate Wolbachia Endosymbiont of Brugia malayi as a Potential Anti-filarial Drug Target.	PLoS Negl Trop Dis	Wu, B., Novelli, J., Foster, J., Vaisvila, R., Conway, L., Ingram, J., Ganatra, M., Rao, A.U., Hamza, I.and Slatko, B.
2003	Mechanistic and mutational studies of Escherichia coli molybdopterin synthase clarify the final step of molybdopterin biosynthesis	J. Biol. Chem.	Wuebbens, M. M. and Rajagopalan, K. V.
2016	Absence of the filarial endosymbiont Wolbachia in seal heartworm (Acanthocheilonema spirocauda) but evidence of ancient lateral gene transfer.	J Parasitol.	Keroack, C.D., Wurster, J.I., Decker, C.G., Williams, K.M., Slatko, B.E., Foster, J.M. and Williams, S.A.
2007	NMR assignment of a KlbA intein precursor from Methanococcus jannaschii.	Biomol NMR	Johnson, M., Southworth, M.Perler, F.and Wuthrich, K.
2007	Solution Structure of a KlbA Intein Precursor from Methanococcus jannaschii.	Protein Sci.	Johnson, M., Southworth, M., Herrmann, T., Brace, L., Perler, F.and Wuthrich, K.
2015	A lipid switch unlocks Parkinson's disease-associated ATP13A2	Proc Natl Acad Sci U S A	Holemans T., Sørensen DM., Veen S., Martin S., Hermans D., Kemmer GC., Haute C., Baekelandt V., Pomorski TG., Agostinis P., Wuytack F., Palmgren M., Eggermont J., Vangheluwe P.
2005	Chracterization of a thermostable UvrD helicase and its participation in helicase-dependent amplification.	J.Biol.Chem.	An.L., Tang, W., Ranalli, T.A., Kim, H-J., Wytiaz, J.and Kong, H.
2014	A continuous-exchange cell-free protein synthesis system based on extracts from cultured insect cells	PLoS One	Stech M, Quast RB, Sachse R, Schulze C, Wüstenhagen DA, Kubick S	Glycobiology
2003	A Dual Role for an Aspartic Acid in Glycosylasparaginase Autoproteolysis.	Structure	Qian, X., Guan, C.and Guo, H.-C.
1998	Base Flipping.	Annual Review Biochem.	Roberts, R.J.and Cheng, X.
1998	Asp34 of PvuII Endonuclease is Directly Involved in DNA Minor Groove Recognition and Indirectly Involved in Catalysis.	J.Mol.Biol.	Horton, J.R., Nastri, H.G., Riggs, P.D.and Cheng, X.
1998	A highly conserved large molecular weight cyclophilin of filarial parasites.	Exp.Parasitol.	Hong, X., Ma, D., Page, A.P., Kumar, S.and Carlow, C.K.S.
1998	Cloning, expression and characterization of a new filarial cyclophilin.	Mol.Biochem.Parasitol.	Hong, X., Ma, D.and Carlow, C.K.S.
1998	Structures of HhaI methyltransferase complexed with substrates containing mismatches at the target base.	Nature Struct.Biol.	O'Gara, M., Horton, J.R., Roberts, R.J.and Cheng, X.
1998	How is modification of the DNA substrate recognized by the PvuII restriction endonuclease?	Biol. Chem.	Horton, J.R., Bonventre, J. and Cheng, X.
2013	Characterization of human plasma-derived exosomal RNAs by deep sequencing	BMC Genomics	Huang, X. et al.
2013	Genome engineering in Saccharomyces cerevisiae using CRISPR-Cas systems	Nucleic Acids Res	DiCarlo JE, Norville JE, Mali P, Rios X, Aach J, Church GM	Gibson Assembly®
2016	RAD-seq derived genome-wide nuclear markers resolve the phylogeny of tunas.	Mol Phylogenet Evol.	Díaz-Arce N, Arrizabalaga H, Murua H, Irigoien X, Rodríguez-Ezpeleta N.
2016	Comprehensive nucelosome mapping of the human genome in cancer progression	Oncotarget	Druliner, B.R., Vera, D., Johnson, R., Ruan, X., Apone, L.M., Dimalanta, E.T., Stewart, F.J., Boardman, L., Dennis, J.H.
2014	Time-resolved fluorescence of 2-aminopurine in DNA duplexes in the presence of the EcoP15I Type III restriction-modification enzyme	Biochem Biophys Res Commun	Ma L, Wu X, Wilson GG, Jones AC, Dryden DT
2005	Self-cleavable stimulus responsive tags for protein purification without chromatography	J. Am. Chem. Soc	Ge, X., et. al.
1995	Crystal structure of the PvuII restriction endonuclease.	Gene	Cheng, X., Balendiran, K., Schildkraut, I., and Anderson, J.E.
2010	Phage display-derived peptides for osteosarcoma imaging	Clin. Cancer Res.	Sun, X. et al.
2010	Designed semisynthetic protein inhibitors of ub/ubl e1 activating enzymes	J. Am. Chem. Soc.	Lu, X., et al.
1993	Crystal structure of the HhaI DNA methyltransferase complexed with S-adenosyl-L-methionine.	Cell	Cheng, X., Kumar, S., Posfai, J., Pflugrath, J.W., and Roberts, R.J.
1993	Crystal Structure of the HhaI DNA Methyltransferase.		Cheng, X., Kumar, S., Klimasauskas, S., and Roberts, R.J.
1996	A Structural Basis for the Preferential Binding of Hemimethylated DNA by HhaI DNA Methyltransferase.	J.Mol.Biol.	O'Gara, M., Roberts, R.J., and Cheng, X.
1994	Hhal Methyltransferase Flips its Target Base Out of the DNA Helix.	Cell	Klimasauskas, S., Kumar, S., Roberts, R.J., and Cheng, X.
1994	Structure of PvuII endonuclease with cognate DNA.	EMBO J.	Cheng, X., Balendiran, K., Schildkraut, I., and Anderson, J.E.
1994	The DNA (cytosine-5) methyltransferases.	Nucl.Acids Res.	Kumar, S., Cheng, X., Klimasauskas, S., Sha, M., Posfai, J., Roberts, R.J., and Wilson, G.G.
1997	DNA containing 4'-thio-2' deoxycytidine inhibits methylation by HhaI methyltransferase.	Nucl.Acids Res.	Kumar, S., Horton, J.R., Jones, G.D., Walker, R.T., Roberts, R.J., and Cheng, X.
2001	AdoMet-dependent methylation, DNA methyltransferases and base flipping.	Nucl.Acids Res.	Cheng, X.and Roberts, R.J.
2010	Base Flipping.	Encyclopedia of Life Sciences	Cheng, X.and Roberts, R.J.
2007	A highly sensitive assay for monitoring the secretory pathway and ER stress.	PLoS One	Badr. C.E., Hewett, J.W., Breakefield, X.Q and Tannous, B.A.
1996	Enzymatic C5-Cytosine Methylation Of DNA - Mechanistic Implications Of New Crystal-Structures For HhaI Methyltransferase-DNA-Adohcy Complexes.	J.Mol.Biol.	O'Gara, M., Klimasauskas, S., Roberts, R., and Cheng, X.D.
2004	An rxr/usp homolog from the parasite nematode, Dirofilaria immitis.	Gene	Shea, C., Hough, D., Xiao, J., Tzertzinis, G.and Maina, C.V.
2009	E.coli RNase III(E38A) generates discrete-sized products from long dsRNA.	RNA	Xiao, J., Feehery, C.E., Tzertzinis, G.and Maina, C.V.
2008	Branched Activation- and Catalysis-Specific Pathways for Electron Relay to the Manganese/Iron Cofactor in Ribonucleotide Reductase from Chlamydia trachomatis.	Biochemistry	Jiang, W., Saleh, L., Barr, E.W., Xie, J., Gardner, M.M., Krebs, C.and Bollinger, J.M.Jr.
2014	Type II Cadherins Guide Assembly of a Direction-Selective Retinal Circuit.	Cell	Xin Duan, Arjun Krishnaswamy, Irina De la Huerta, Joshua R Sanes	High-Fidelity PCR
2013	The Xist lncRNA exploits three-dimensional genome architecture to spread across the X chromosome	Science	Engreitz JM, Pandya-Jones A, McDonel P, Shishkin A, Sirokman K, Surka C, Kadri S, Xing J, Goren A, Lander ES, Plath K, and Guttman M
1995	Photochemically initiated protein splicing.	Angew.Chem.Int.Ed.Engl.	Cook, S.N., Jack, W.E., Xiong, X., Danley, L.E., Ellman, J.A., Shultz, P.G., and Noren, C.J.
2009	Identification of nose-to-brain homing peptide through phage display	Peptides	Wan, X.M. et al.
2012	Antiproliferative small-molecule inhibitors of transcription factor LSF reveal oncogene addiction to LSF in hepatocellular carcinoma	Proc Natl Acad Sci. USA	Grant, T.J., Bishop, J.A., Christadore, L.M., Barot, G., Chin, H.G., Woodson, S., Kavouris, J., Siddiq, A., Gredler, R., Shen, X.N., Sherman, J., Meehan, T., Fitzgerald, K., Pradhan, S., Briggs, L.A., Andrews, W.H., Sarkar, D., Schaus, S.E. and Hansen, U.
2005	Codon-optimized Gaussia luciferase cDNA for mammalian gene expression in culture and in vivo	Mol Ther.	Tannous, B.A., Kim, D.E., Fernandez, J.L., Weissleder, R. and Breakefield, X.O.
2005	Codon-optimized Gaussia luciferase cDNA for mammalian gene expression in culture and in vivo	Mol Ther.	Tannous, B.A., Kim, D.E., Fernandez, J.L., Weissleder, R., Breakefield, X.O.
2007	A highly sensitive assay for monitoring the secretory pathway and ER stress	PLoS One	Badr, C.E., Hewett, J.W., Breakefield, X.O. and Tannous, B.A.
2008	A secreted luciferase for ex vivo monitoring of in vivo processes	Nat. Methods	Wurdinger, T., Badr, C., Pike, L., de Kleine, R., Weissleder, R. and Breakefield, X.O. and Tannous, B.A.
2008	A secreted luciferase for ex vivo monitoring of in vivo processes	Nat. Methods	Wurdinger, T., Badr, C., Pike, L., de Kleine, R., Weissleder, R., Breakefield, X.O., Tannous, B.A.
2009	The KrÃ¼ppel-like zinc finger protein Glis3 directly and indirectly activates insulin gene transcription	Nucleic Acids Res.	adr, C.E., Hewett, J.W., Breakefield, X.O. and Tannous, B.A.
1995	A Promising Recombinant Antigen for the Early Detection of Heartworm Infection.	Proceeding of the Heartworm Symposium	Hong, X.Q., Mejia, J.S., Nkenfou, C., Perler, F.B., and Carlow, C.K.
1996	Cloning and Expression of DiT33 from Dirofilaria-Immitis - a Specific and Early Marker of Heartworm Infection.	Parasitology	Hong, X.Q., Mejia, J.S., Kumar, S., Perler, F.B., and Carlow, C.K.S.
1996	A Cyclosporine A-Sensitive Small Molecular-Weight Cyclophilin Of Filarial Parasites.	Mol.Biochem.Parasitol.	Ma, D., Hong, X.Q., Raghavan, N., Scott, A.L., McCarthy, J.A., Nutman, T.B., Williams, S.A., and Carlow, C.K.S.
2002	Mechanistic and kinetic considerations of protein splicing.	Chem.Rev.	Evans, T.C., Jr.and Xu, M-Q
2002	Functional analysis of iceA1, a CATG-recognizing restriction endonuclease gene in Helicobacter pylori.	Nucl.Acids Res.	Xu, Q., Morgan, R.D., Roberts, R.J., Xu, S.Y., van Doorn, L.J., Donahue, J.P., Miller, G.G.and Blaser, M.J.
2002	Directed Evolution of Restriction Endonuclease BstYI to Achieve Increased Substrate Specificity.	J.Mol.Biol.	Samuelson, J.C.and Xu, S.Y.
2001	Characterization of a naturally occurring trans-splicing intein from Synechocystis sp.PCC6803.	Biochemistry	Martin, D.D., Xu, M-Q and Evans, T.C.Jr.
2001	Protein trans-Splicing To Produce Herbicide-Resistant Acetolactate Synthase.	Appl.Environ.Microbiol.	Sun, L., Ghosh, I., Paulus, H.and Xu, M.Q.
2001	Purification of proteins fused to either the amino or carboxy terminus of the Mycobacterium xenopi gyrase A intein.	BioTechniques	Southworth, M.W., Amaya, K., Evans, T.C., Xu, M-Q and Perler, F.B.
2001	Protein splicing.	Encyclopedia of Genetics	Xu, M.Q., Chong, S.and T.C.Evans, Jr.
2001	Intein-Mediated Ligation and Cyclization of Expressed Proteins.	Methods	Xu, M.Q.and T.C.Evans, Jr.
2001	Zinc Inhibition of Protein trans-Splicing and Identification of Regions Essential for Splicing and Association of a Split Intein.	J.Biol.Chem.	Ghosh, I., Sun, L.and Xu, M.Q.
2001	Restriction enzyme BsoBI-DNA complex: a tunnel for recognition of degenerate DNA sequences and potential histidine catalysis.	Structure	van der Woerd, M.J., Pelletier, J.J., Xu, S.and Friedman, A.M.
2001	Structural study of restriction enzyme MspI/DNA complex by x-ray crystallography	Biophys. J.	Xu, Q., O'Loughlin, T.J., Kucera, R.B., Schildkraut, I., Guo, H.-C.
2011	Natural and engineered nicking endonucleases--from cleavage mechanism to engineering of strand-specificity.	Nucl.Acids.Res.	Chan, S.H., Stoddard, B.L.and Xu, S.Y.
2011	Two Color STED microscopy in living cells.	Biomedical Optics Express	Pellett, P.A., Sun, X., Gould, T.J., Rothman, J.E., Xu, M-Q, CorrÃªa, I.R.Jr.and Bewersdorf, J.
2011	Asymmetric DNA recognition by the OkrAI endonuclease, an isoschizomer of BamHI.	Nucl.Acids.Res.	Vanamee, E.S., Viadiu, H., Chan, S.H., Ummat, A., Hartline, A.M., Xu, S.Y.and Aggarwal, A.K.
2011	Characterization of MspNI (G/GWCC) and MspNII (R/GATCY), novel thermostable Type II restriction endonucleases from Meiothermus sp., isoschizomers of AvaII and BstYI	Mol Biol Rep.	Gupta, R., Xu, S.Y., Sharma, P. and Capalash, N.
2003	Protein trans-splicing in transgenic plant chloroplast: Reconstruction of herbicide resistance from split genes.	Proc.Natl.Acad.Sci.USA	Chin, H.G., Kim, G.D., Marin, I., Mersha, F., Evans, T.C.Jr., Chen, L., Xu, M.-Q.and Pradhan, S.
2003	PspGI, a type II restriction endonuclease from the extreme thermophile Pyrococcus sp.: structural and functional studies to investigate an evolutionary relationship with several mesophilic restriction enzymes.	J.Mol.Biol.	Pingoud, V., Conzelmann, C., Kinzebach, S., Sudina, A., Metelev, V., Kubareva, E., Bujnicki, J.M., Lurz, R., Luder, G., Xu, S.Y.and Pingoud, A
2003	Purification of recombinant proteins from E.coli by engineered inteins.	Methods Mol.Biol.	Xu, M.-Q.and Evans, T.C., Jr.
2003	A single surface tryptophan in the chitin-binding domain from Bacillus circulans chitinase A1 plays a pivotal role in binding chitin and can be modified to create an elutable affinity tag.	Biochim.Biophys.Acta.	Ferrandon, S., Sterzenbach, T., Mersha, F.B.and Xu, M-Q
2003	Generation of an affinity column for antibody purification by intein-mediated protein ligation.	J.Immunol.Methods	Sun, L., Ghosh, I.and Xu, M.Q.
2000	Fusions to Self-Splicing Inteins for Protein Purification.	Methods in Enzymology	Xu, M.Q., Paulus, H.and Chong, S.
2000	Crystallization and preliminary X-ray diffraction analysis of MspI restriction endonuclease in complex with its cognate DNA.	Acta Crystallogr.D.Biol.Crystallogr.	O'Loughlin, T.J., Xu, Q., Kucera, R.B., Dorner, L.F., Sweeney, S., Schildkraut, I.and Guo, H.-C.
2000	Identification of type II restriction and modification systems in Helicobacter pylori reveals their substantial diversity among strains.	Proc.Natl.Acad.Sci.USA	Xu, Q., Morgan, R.D., Roberts, R.J.and Blaser, M.J.
2000	Purification of the Novel Endonuclease, Hpy188I, and Cloning of Its Restriction-Modification Genes Reveal Evidence of Its Horizontal Transfer to the Helicobacter pylori Genome.	J.Biol.Chem.	Xu, Q., Stickel, S., Roberts, R.J., Blaser, M.J.and Morgan, R.D.
2000	Protein trans-Splicing and Cyclization by a Naturally Split Intein from the dnaE Gene of Synechocystis Species PCC6803.	J.Biol.Chem.	Evans, T.C., Martin, D., Kolly, R., Panne, D., Sun, L., Ghosh, I., Chen, L., Benner, J., Liu, X-Q and Xu, M-Q
2000	Structural Insights into the Protein Splicing Mechanism of PI-SceI.	J.Biol.Chem.	Poland, B.W., Xu, M.Q.and Quiocho, F.L.
1998	Modulation of protein splicing of the saccharomyces cerevisiae vacuolar membrane ATPase intein.	J.Biol.Chem.	Chong, S., Williams, K.S., Wotkowicz, C.and Xu, M.Q.
1998	Semisynthesis of cytotoxic proteins using a modified protein splicing element.	Protein Sci.	Evans, T.C., Benner, J.and Xu, M-Q
1998	Protein trans-splicing and functional mini-inteins of a cyanobacterial dnaB intein.	Biochim.et Biophys.Acta	Wu, H., Xu, M-Q and Liu, X-Q
1998	Characterization of an Extremely Thermostable Restriction Enzyme, PspGI, from a Pyrococcus Strain and Cloning of the PspGI Restriction-Modification System in Escherichia coli.	Appl.Environ.Microbiol.	Morgan, R., Xiao, J.P.and Xu, S.Y.
1998	Crystal Structures of Flavobacterium Glycosylasparaginase.	J.Biol.Chem.	Guo, H.-C., Xu, Q., Buckley, D.and Guan, C.
1998	Cloning and expression of the ApaLI, NspI, NspHI, SacI, ScaI and SapI restriction-modification systems in Escherichia coli	Mol.Gen.Genet.	Xu, S.Y., Xiao, Ettwiller L., holden, M., Aliotta, J., Poh, C.L., Dalton, M., Robinson, D.P., Petronzio, T.R., Moran, L., Ganatra, M., Ware, J., Slatko, B.and Benner, J.
1999	"Protein Splicing"	The Encyclopedia of Molecular Biology	Perler, F.B., Xu, M.and Noren, C.J.
1999	Characterization of a self-splicing mini-intein and its conversion into autocatalytic N- and C-terminal cleavage elements: facile production of protein building blocks for protein ligation.	Gene	Mathys, S., Evans, T.C., Chute, I.C., Wu, H., Chong, S., Benner, J., Liu, X.Q.and Xu, M.Q.
1999	Intein-Mediated Protein Ligation: Harnessing Nature's Escape Artists.	Biopolymers	Evans, T.C.and Xu, M-Q
1999	Structural Insights into the Mechanism of Intramolecular Proteolysis.	Cell	Xu, M.Q., Buckley, D., Guan, C.and Guo, H-C
1999	The in Vitro Ligation of Bacterially Expressed Proteins Using an Intein from Methanobacterium thermoautotrophicum.	J.Biol.Chem.	Evans, T.C., Benner, J.and Xu, M-Q
1999	The Cyclization and Polymerization of Bacterially Expressed Proteins Using Modified Self-splicing Inteins.	J.Biol.Chem.	Evans, T.C., Benner, J.and Xu, M-Q
1999	Purification of Proteins Fused to Either the Amino or Carboxy Terminus of the Mycobacterium xenopi Gyrase A Intein.	Cloning and Expression vectors for Gene Function Analysis	Southworth, M.W., Amaya, K., Evans, T.C., Xu, M.Q.and Perler, F.B.
2004	An asymmetric complex of restriction endonuclease MspI on its palindromic DNA recognition site.	Structure	Xu, Q.S., Kucera, R.B., Roberts, R.J.and Guo, H.-C.
2004	An improved method for utilization of peptide substrates for antibody characterization and enzymatic assays.	J.Immunol.Methods	Ghosh, I., Sun, L., Evans, T.C.Jr.and Xu, M.Q.
2004	Producing peptide arrays for epitope mapping by intein-mediated protein ligation.	BioTechniques	Sun, L., Rush, J., Ghosh, I., Maunus, J.R.and Xu, M.Q.
2004	Western blot analysis of Src kinase assays using peptide substrates ligated to a carrier protein.	BioTechniques	Xu, J., Sun, L., Ghosh, I.and Xu, M.-Q.
2013	Three-color single molecule imaging shows WASP detachment from Arp2/3 complex triggers actin filament branch formation	eLife	Benjamin A Smith, Shae B Padrick, Lynda K Doolittle, Karen Daugherty-Clarke, Ivan R Corrêa Jr, Ming-Qun Xu, Bruce L Goode3, Michael K Rosen, Jeff Gelles
2013	The Formin Daam1 and Fascin Directly Collaborate to Promote Filopodia Formation	Current Biology	Jaiswal, R., Breitsprecher, D., Collins, A., Correa, I.R., Jr., Xu, M.-Q. and Goode, B.L.
2013	Alternative spliceosome assembly pathways revealed by single-molecule flourescence microscopy.	Cell Rep	Shcherbakova, I., Hoskins, A.A., Friedman, L.I., Serebrov, V., Correa, I.R., Jr., Xu, M-Q., Gelles, J. and Moore, M.J.
2013	High-throughput sequencing of methylated cytosine enriched by modification-dependent restriction endonuclease MspJI	BMC Genetics	Xiaojun Huang, Hanlin Lu, Jun-Wen Wang, Liqin Xu, Siyang Liu, Jihua Sun, Jun Wang, Fei Gao
2015	Single-molecule visualization of a formin-capping protein 'decision complex' at the actin filament barbed end	Nat Commun.	Bombardier, J.P., Eskin, J.A., Jaiswal, R., Correa, I.R., Jr., Xu, M.Q., Goode, B.L. and Gelles, J.
2006	Engineering a rare-cutting restriction enzyme: genetic screening and selection of NotI variants.	NAR	Samuelson, J.C., Morgan, R.D., Benner, J.S., Claus, T.E., Packard, S.L.and Xu, S.Y.
2016	Expression and purification of the modification-dependent restriction enzyme BisI and its homologous enzymes	Sci Rep	Xu, S.Y., Klein, P., Degtyarev, S.K.h. and Roberts, R.J.
2014	Engineering nicking enzymes that preferentially nick 5-methylcytosine-modified DNA	Nucleic Acids Res	Gutjahr A, Xu SY	Gibson Assembly®
2005	Protein Splicing Elements and Plants: From Transgene Containment to Protein Purification.	Plant Biol.	Evans, T.C., Jr., Xu, M.-Q.and Pradhan, S.
2005	Two crystal forms of the restriction enzyme MspI-DNA complex show the same novel structure.	Protein Sci.	Xu, Q.S., Robert, R.J.and Guo, H.-C.
2005	Recent Advances in Protein Splicing: Manipulating Proteins In Vitro and In Vivo.	Curr.Opin.Biotech.	Xu, M.Q.and Evans, T.C.Jr.
2005	Implications for Switching Restriction Enzyme Specificities from the Structure of BstYI Bound to a BglII DNA Sequence	Structure	Townson, S.A., Samuelson, J.C., Xu, S.Y.and Aggarwal, A.K.
1995	Cloning of a gene from Thermus filiformis and characterization of the thermostable nuclease.	Gene	Fomenkov, A., and Xu, S.Y.
1995	Isolation of temperature-sensitive mutants of the BamHI restriction endonuclease.	Gene	Fomenkov, A., and Xu, S.Y.
1995	Nucleotide sequence of a small plasmid isolated from Acetobacter pasteurianus.	Gene	Fomenkov, A., Xiao, J.P., and Xu, S.Y.
2010	Polymerase-endonuclease amplification reaction (PEAR) for large-scale enzymatic production of anitsense oligonucleotices.	PLoS ONE	Wang, X., Gou, D.and Xu, S.Y.
2010	In vivo transfection of developmentally competent Brugia malayi infective larvae	Int.J.Parasitol.	Xu, S., Liu, C., Tzertzinis, G., Elodie Ghedin, E., Christopher, C., Evans, C.C., Kaplan, R.and Unnasch, T.R.
2010	Unusual target site disruption by the rare-cutting HNH restriction endonuclease PacI.Structure		Shen, B.W., Heiter, D.F., Chan, S.H., Wang, H., Xu, S.Y., Morgan, R.D., Wilson, G.G.and Stoddard, B.L.
2010	Unusual target site disruption by the rare-cutting HNH restriction endonuclease PacI	Structure	Shen, B.W., Heiter, D.F., Chan, S.H., Wang, H., Xu, S.Y., Morgan, R.D., Wilson, G.G. and Stoddard, B.L.
2010	Cofactor requirement of HpyAV restriction endonuclease.	PLoS ONE	Chan, S.H., Opitz, L., Higgins, L., O'loane, D.and Xu, S.Y.
2010	Asymmetric DNA recognition by the OkrAI endonuclease, an isoschizomer of BamHI.	Nucl.Acids.Res.	Vanamee, E.S., Viadiu, H., Chan, S.H., Ummat, A., Hartline, A.M., Xu, S.Y.and Aggarwal, A.K.
1993	In vitro protein splicing of purified precursor and the identification of a branched intermediate.	Cell	Xu, M.Q., Southworth, M.W., Mersha, F.B., Hornstra, L.J., and Perler, F.B.
1993	Protecting Recognition Sequences on DNA by a Cleavage-Deficient Restriction Endonuclease.	BioTechniques	Xu, S., and Schildkraut, I.
1996	Molecular cloning and expression of NlaIII restriction-modification system in E.coli.	Gene	Morgan, R.D., Camp, R.R., Wilson, G.G., and Xu, S.Y.
1996	Cloning and sequence comparison of AvaI and BsoBI restriction-modification systems.	Mol.Gen.Genet.	Ruan, H., Lunnen, K.D., Scott, M.E., Moran, L.S., Slatko, B.E., Pelletier, J.J., Hess, E.J., Benner, J., Wilson, G.G., and Xu, S.Y.
1996	The mechanism of protein splicing and its modulation by mutation.	EMBO J.	Xu, M.Q., and Perler, F.B.
1991	Overexpression, purification and crystallization of BamHI endonuclease.	Nucl.Acids Res.	Jack, W.E., Greenough, L., Dorner, L.F., Xu, S.Y., Strzelecka, T., Aggarwal, A.K., and Schildkraut, I.
1991	Isolation of BamHI variants with reduced cleavage activities.	J.Biol.Chem.	Xu, S.Y., and Schildkraut, I.
1991	Cofactor requirements of BamHI mutant endonuclease E77K and its suppressor mutants.	J.Bacteriol.	Xu, S.Y., and Schildkraut, I.
1994	Construction of pSC101 derivatives with Camr and Tetr for selection or LacZ' for blue/white screening.	BioTechniques	Xu, S.Y., and Fomenkov, A.
1994	The 'endo-blue method' for direct cloning of restriction endonuclease genes in E.coli.	Nucl.Acids Res.	Fomenkov, A., Xiao, J.P., Dila, D., Raleigh, E., and Xu, S.Y.
1997	Cloning of the BssHII restriction-modification system in Escherichia coli: BssHII methyltransferase contains circularly permuted cytosine-5 methyltransferase motifs.	Nucl.Acids Res.	Xu, S.Y., Xiao, J.P., Posfai, J., Maunus, R., and Benner, J
1997	Cloning and expression of AatII restriction-modification system in Escherichia coli.	Gene	Nwankwo, D.O., Maunus, R.E., and Xu, S.Y.
1997	Overexpression of BsoBI restriction endonuclease in E.coli, purification of the recombinant BsoBI, and identification of catalytic residues of BsoBI by random mutagenesis.	Gene	Ruan, H., Lunnen, K.D., Pelletier, J.J., and Xu, S.Y.
1997	Protein splicing and autoproteolysis mechanisms.	Curr.Opin.Chem.Biol.	Perler, F.B., Xu, M.-Q.and Paulus, H.
1997	Identification of a thermophilic plasmid origin and its cloning within a new Thermus-E.coli shuttle vector.	Gene	Wayne, J., and Xu, S.Y.
1997	The Tsp45I restriction-modification system is plasmid-borne within its thermophilic host.	Gene	Wayne, J., Holden, M., and Xu, S.Y.
1997	Protein Splicing of the Saccharomyces cerevisiae VMA Intein without the Endonuclease Motifs*.	J Biol.Chem.	Chong, S., and Xu, M.Q.
1997	Single-column purification of free recombinant proteins using a self-cleavable affinity tag derived from a protein splicing element.	Gene	Chong, S., Mersha, F.B., Comb, D.G., Scott, M.E., Landry, D., Vence, L.M., Perler, F.B., Benner, J., Kucera, R.B., Hirvonen, C.A., Pelletier, J.J., Paulus, H., and Xu, M.Q.
2012	Characterization of MspNI (G/GWCC) and MspNII (R/GATCY), novel thermostable Type II restriction endonucleases from Meiothermus sp., isoschizomers of AvaII and BstYI	Mol Biol Rep.	Gupta, R., Xu, S.Y., Sharma, P. and Capalash, N.
2007	Use of intein-mediated phosphoprotein arrays to study substrate specificity of protein phosphatases.	BioTechniques	Kochinyan, S., Sun.L., Ghosh, I., Barshevsky, T., Xu, J.and Xu, M.Q.
2007	Design and Use of Ligated Phophoproteins: Study of Protein Phosphatases by Dot Blot Array, ELISA and Western Blot Analysis.	Methods	Sun, L., Ghosh, I., Barshevsky, T., Kochinyanm, S.and Xu, M.
2007	Intein-mediated peptide arrays for epitope mapping and kinase/phosphatase assays	Methods Mol Biol	Xu, M.Q., Ghosh, I., Kochinyan, S., Sun, L
2008	Structures of the rare-cutting restriction endonuclease NotI reveal a unique metal binding fold involved in DNA binding.	Structure	Lambert, A.R., Sussman, D., Shen, b., Maunus, R., Nix, J., Samuelson, J., Xu, S.Y.and Stoddard, B.L.
2008	Targeting DNA (5)mCpG sites with chimeric endonucleases.	Anal.Biochem.	Formenkov, A., Too, P.H., Chan, S.H., Vaisvila, R., Cantin, B.A., Mazzola, L., Tam, V.and Xu, S.Y.
2005	Harnessing Inteins for Protein Purification and Characterization.	Nucleic Acids and Molecular Biology	Chong, S.and Xu.M.Q.
2007	Phosphatase Assays Using Ligated Phosphoprotein Substrates.	Nature Protocols	Sun, L., Ghosh, I., Kochinyan, S.and Xu.M.Q.
2015	A metagenomics and case-control study to identify viruses associated with bovine respiratory disease.	J Virol	Terry Fei Fan Ng, Nikola O Kondov, Xutao Deng, Alison Van Eenennaam, Holly L Neibergs, Eric Delwart	cDNA Synthesis
2013	Identification of new proteins that modulate the germination of spores of bacillus species	J Bacteriol	Ramirez-Peralta A, Gupta S, Butzin XY, Setlow B, Korza G, Leyva-Vazquez MA, Christie G, Setlow P	Gibson Assembly®
2001	Engineering a Nicking Endonuclease N.AlwI by Domain Swapping	Proc.Natl.Acad.Sci.USA	Xu, Y., Lunnen, K.and Kong, H.
2011	YaeJ is a novel ribosome-associated protein inEscherichia coli that can hydrolyze peptidyl-tRNA on stalled ribosomes	Nucleic Acids Res.	Handa, Y., Inaho, N. and Nameki, N.
2011	The characterization of human adenylate kinases 7 and 8 demonstrates differences in kinetic parameters and structural organization among the family of adenylate kinase isoenzymes	Biochem J.	Panayiotou, C., Solaroli, N., Xu, Y., Johansson, M. and Karlsson, A.
2011	A highly controllable reconstituted cell-free system--a breakthrough in protein synthesis research	Curr. Pharm. Biotechnol.	Ohashi, H., Kanamori, T., Shimizu, Y. and Ueda, T.
2011	A methylation and phosphorylation switch between an adjacent lysine and serine determines human DNMT1 stability.	Nat Struct Mol Biol.	Estève, P.O., Chang, Y., Samaranayake, M., Upadhyay, A.K., Horton, J.R., Feehery, G.R., Cheng, X.and Pradhan, S.
2011	5-aza-2'-deoxycytidine and interleukin-1 cooperate to regulate matrix metalloproteinase-3 gene expression.	Int.J.Cancer	Couillard, J., EstÃ¨ve, P.O., Pradhan, S.and St-Pierre, Y.
2000	Cloning, Expression and Purification of a Thermostable Nonhomodimeric Restriction Enzyme, BslI	J.Bacteriol.	Hsieh, P.-C., Xiao, J.-P., O'Loane, D.and Xu, S.-Y.
1998	Site-directed Mutagenesis of Essential Residues Involved in the Mechanism of Bacterial Glycosylasparaginase.	J.Biol.Chem.	Liu, Y., Guan, C.and Aronson, N.N., Jr.
1998	Characterization and functional analysis of the cis-autoproteolysis active center of glycosylasparaginase.	J.Biol.Chem.	Guan, C., Liu, Y., Shao, Y., Cui, T., Liao, W., Ewel, A., Whitaker, R.and Paulus, H.
2013	A membrane-bound NAC transcription factor, ANAC017, mediates mitochondrial retrograde signaling in Arabidopsis	Plant Cell	Ng S, Ivanova A, Duncan O, Law SR, Van Aken O, De Clercq I, Wang Y, Carrie C, Xu L, Kmiec B, Walker H, Van Breusegem F, Whelan J, Giraud E	Gibson Assembly®
2013	Rapid, modular and reliable construction of complex mammalian gene circuits	Nucleic Acids Res	Guye P, Li Y, Wroblewska L, Duportet X, Weiss R	Gibson Assembly®
2013	Role of DNA methylation in expression and transmission of porcine endogenous retroviruses.	PLOS ONE	Matousková, M., Vesely, P., Daniel, P., Mattiuzzo, G., Hector, R.D., Scobie, L., Takeuchi, Y. and Hejnar, J.
2013	The role of the methyltransferase domain of bifunctional restriction enzyme RM.BpuSI in cleavage activity	PLOS ONE	Sarrade-Loucheur, A., Xu, S-Y. and Chan, S-H.
2013	Biochemical and physiological characterization of fut4 and fut6 mutants defective in arabinogalactan-protein fucosylation in Arabidopsis.	PLOS ONE	Liang, Y., Basu, D., Pattathil, S., Xu, W.L., Venetos, A., Martin, S.L., Faik, A., Hahn, M.G. and Showalter, A.M.
2013	Fully assembled genome sequence for Salmonella enterica subsp. Enterica Serovar Javiana CFSAN001992.	Genome Announcements	Allard, M.W. Muruvanda, T., Strain, E., Timme, R., Luo, Y., Wang, C., Keys, C.E., Payne, J., Cooper, T. Luong, K., Song, Y., Chin, C.-S., Korlach, J., Roberts, R.J., Evans, P., Musser, S.M., Brown, E.W.
2013	Fast mitochondrial DNA isolation from mammalian cells for next-generation sequencing	Biotechniques	Wilber Quispe-Tintaya, Ryan R White, Vasily N Popov, Jan Vijg, Alexander Y Maslov
2015	Sequence-specific DNA nicking endonucleases	Biomol concepts	Xu, S-Y
2015	Caspr2 autoantibodies target multiple epitopes.	Neurol Neuroimmunol Neuroinflamm	Olsen AL., Lai Y., Dalmau J., Scherer SS., Lancaster E.
2015	Cloning Should Be Simple: Escherichia coli DH5α-Mediated Assembly of Multiple DNA Fragments with Short End Homologies	PLoS One	Kostylev M., Otwell A.E., Richardson R., Suzuki Y.
2015	Insulin-like factor regulates neural induction through an IGF1 receptor-independent mechanism.	Mol Biol Cell	Haramoto Y., Takahashi S., Oshima T., Onuma Y., Ito Y., Asashima M.
2015	Thousands of RAD-seq Loci Fully Resolve the Phylogeny of the Highly Disjunct Arctic-Alpine Genus Diapensia (Diapensiaceae).	PLoS One.	Hou Y, Nowak MD, Mirré V, Bjorå CS, Brochmann C, Popp M.
2015	Identification of single nucleotide polymorphism markers associated with bacterial cold water disease resistance and spleen size in rainbow trout.	Front Genet.	Liu S, Vallejo RL, Palti Y, Gao G, Marancik DP, Hernandez AG, Wiens GD.
2015	Complete Genome Sequence Analysis of Bacillus Subtilis T30	Genome Announc.	Xu, S-Y., Boitano, M., Clark, T.A., Vincze, T., Fomenkov, A., Kumar, S., Too, PH-M., Gonchar, D., Degtyarev, S.K. and Roberts, R.J.
2006	Synthesis and evaluation of the bioluminescent activity of (S)-Cypridina luciferin and its analogs	Tetrahedron Letters	Wu, C., Kawasaki, K., Ohgiya, S., Ohmiya, Y.
2006	Simultaneous amplification and screening of whole plasmids using the T7 bacteriophage replisome.	Nucl.Acids.Res.	Xu, Y., Kim, H-J., Kays, A., Rice, J.and Kong, H.
2006	Syntheses and evaluation of the bioluminescent activity of (S)-Cypridina luciferin and its analogs	Tetrahedron Letters	Wu, C., Kawasaki, K., Ohgiya.S. and Ohmiya, Y.
2006	SmpB triggers GTP hydrolysis of elongation factor Tu on ribosome by compensating for the lack of codon-anticodon interaction during trans-translation initiation	J. Biol. Chem.	Shimizu, Y. and Ueda, T.
2006	Selection and properties for the recognition of P19 embryonic carcinoma stem cells	Biotechnol. Prog.	Morita, Y. et al.
2016	Advanced uracil DNA glycosylase-supplemented real-time reverse transcription loop-mediated isothermal amplification (UDG-rRT-LAMP) method for universal and specific detection of Tembusu virus	Scientific Reports	Tang Y, Chen H, Diao Y
2016	RAD-seq data point to a northern origin of the arctic-alpine genus Cassiope (Ericaceae).	Mol Phylogenet Evol.	Hou Y, Nowak MD, Mirré V, Bjorå CS, Brochmann C, Popp M.
2014	A Modified Janus Cassette (Sweet Janus) to Improve Allelic Replacement Efficiency by High-Stringency Negative Selection in Streptococcus pneumoniae	PLoS One	Li Y, Thompson CM, Lipsitch M	Gibson Assembly®
2014	RNA-RNA Interactions Enable Specific Targeting of Noncoding RNAs to Nascent Pre-mRNAs and Chromatin Sites	Cell	Jesse M. Engreitz, Klara Sirokman, Patrick McDonel, Alexander A. Shishkin, Christine Surka, Pamela Russell, Sharon R. Grossman, Amy Y. Chow, Mitchell Guttman, and Eric S. Lander
2014	The CLO3403/CLO3404 Two-Component System of Clostridium botulinum E1 Beluga Is Important for Cold Shock Response and Growth at Low Temperatures	Appl Environ Microbiol	Mascher G, Derman Y, Kirk DG, Palonen E, Lindström M, Korkeala H
2014	Transcriptomic analysis of carboxylic acid challenge in Escherichia coli: beyond membrane damage	PLoS One	Royce LA, Boggess E, Fu Y, Liu P, Shanks JV, Dickerson J, Jarboe LR	Gibson Assembly®
2014	Therapeutic epitopes of Leptospira LipL32 protein and their characteristics	Protein Eng Des Sel	Maneewatch S, Adisakwattana P, Chaisri U, Saengjaruk P, Srimanote P, Thanongsaksrikul J, Sakolvaree Y, Poungpan P, Chaicumpa W	Phage Display
2005	A small-molecule-based approach to sense codon-templated natural-unnatural hybrid peptides. Selective silencing and reassignment of the sense codon by orthogonal reacylation stalling at the single-codon level	J. Am. Chem. Soc.	Sando, S., Kanatani, K., Sato, N., Matsumoto, H. Hohsaka, T. and Aoyama, Y.
2005	Protein synthesus by pure translation systems	Methods	Shimizu, Y. Kanamori, T. and Ueda, T.
2005	DNA -binding activity of LndI protein and temporal expression of the gene that upregulates landomycin E production in Streptomyces globisporus 1912	Microbiology	Rebets, Y., et al.
2005	Development of a minimal cell-free translation system for the synthesis of presecretory and integral membrance proteins	Biotechnol, Prog.	Kuruma, Y., Nishiyama, K., Shimizu, Y., Muller, M and Ueda, T.
1995	Protein splicing: Chracterization of the aminosuccinimide residue at the carboxyl terminus of the excised intervening sequence.	Biochemistry	Shao, Y., Xu, M.Q.and Paulus, H.
2010	A highly controllable reconstituted cell-free system--a breakthrough in protein synthesis research	Curr. Pharm. Biotechnol.	Ohashi, H., Kanamori, T., Shimizu, Y. and Ueda, T.
2010	Multichannel perfusion culture bioluminescence reporter system for longterm detection in living cells	Anal. Biochem.	Watanabe, T., Enomoto, T., Takahashi, M., Honma, S., Honma, K. and Ohmiya, Y.
2010	Splicing of the Mycobacteriophage Bethlehem DnaB intein: identification of a new mechanistic class of inteins that contain an obligate block F nucleophile.	Journal of Biological Chemistry	Tori, K., Dassa, B., Johnson, M.A., Southworth, M.W., Brace, L.E., Ishino, Y., Pietrokovski, S., and Perler, F.B.
2010	Repositioning of an existing drug for the neglected tropical disease Onchocerciasis.	Proc.Natl.Acad.Sci.USA	Gloeckner, C., Garner, A.L., Mersha, F., Oksov, Y., Tricoche, N., Eubanks, L.M., Lustigman, S., Kaufmann, G.F.and Janda, K.D.
2010	Identification of a novel muscle targeting peptide in mdx mice	Peptides	Seow, Y. et al.
1993	A sensitive serodiagnostic test for onchocerciasis using a cocktail of recombinant antigens.	Am J Trop Med Hyg.	Bradley, J.E., Trenholme, K.R., Gillespie, A.J., Guderian, R., Titanji, V., Hong, Y., and McReynolds, L.
1993	Recent Advances in the Application of Molecular Biology in Filariasis.	Proceeding of the 34th SEAMEO TROPMED Regional Seminar: Southeast Asian Journal of Tropical Medicine and Public Health	McReynolds, L.A., Poole, C., Hong, Y., Williams, S.A., Partono, F., and Bradley, J.
1996	Immunoglobulin G Subclass Responses of Children during Infection with Onchocerca volvulus.	Clinical and Diagnostic Laboratory Immunology	Gbakima, A.A., Nutman, T.B., Bradley, J.E., McReynolds, L.A., Winget, M.D., Hong, Y., and Scott, A.L.
1996	Protein Splicing: Evidence for an N-O Acyl Rearrangement as the Initial Step in the Splicing Process.	Biochemistry	Shao, Y., Xu, M.Q., and Paulus, H.
1996	Protein splicing involving the Saccharomyces cerevisiae VMA intein.The steps in the splicing pathway, side reactions leading to protein cleavage, and establishment of an in vitro splicing system.	J.Biol.Chem.	Chong, S., Shao, Y., Paulus, H., Benner, J., Perler, F.B., and Xu, M.Q.
1987	Restriction endonucleases for pulsed field mapping of bacterial genomes.	Nucl.Acids Res.	McClelland, M., Jones, R., Patel, Y., and Nelson, M.
1994	Fibroblast growth factor and cyclic AMP (cAMP) synergistically active gene expression at a cAMP response element.	Mol.Cell.Biol.	Tan, Y., Low, K.G., Boccia, C., Grossman, J., and Comb, M.J.
1994	Protein splicing: an analysis of the branched intermediate and its resolution by succinimide formation.	EMBO J.	Xu, M.Q., Comb, D.G., Paulus, H., Noren, C.J., Shao, Y., and Perler, F.B.
1990	Cleavage at the twelve-base-pair sequence 5'-TCTAGATCTAGA-3' using M.XbaI (TCTAGm6A) methylation and DpnI (Gm6A/TC) cleavage.	Nucl.Acids Res.	Patel, Y., Van Cott, E., Wilson, G.G., and McClelland, M.
1988	A site-specific single strand endonuclease activity induced by NYs-1 virus infection of a Chlorella-like green alga.	Nucl.Acids Res.	Xia, Y., Morgan, R., Schildkraut, I., and Van Etten, J.L.
1997	Detection of Loa loa-specific DNA in Blood from Occult-Infected Individuals.	Exp.Parasitol.	Toure, F.S., Bain, O., Nerrienet, E., Millet, P., Wahl, G., Toure, Y., Doumbo, O., Nicolas, L., Georges, A.L., McReynolds, L.A., and Egwang, T.G.
2012	Clathrin promotes centrosome integrity in early mitosis through stabilization of centrosomal ch-TOG	J Cell Bio.	Foraker, A.B., Camus, S.M., Evans, T.M., Majeed, S.R., Chen, C.-Y., Taner, S.B., Correa, I.R. Jr., Doxsey, S.J. and Brodsky, F.M.
2012	Detection of miRNAs with a nanopore single-molecule counter	Expert Rev Mol Diagn.	Gu, L.Q., Wanunu, M., Wang, M.X., McReynolds, L. and Wang, Y.
2007	Protein synthesis in liposomes with a minimal set enzymes	Biochem. Biophys. Res. Commun.	Murtas, G., Kuruma, Y., Bianchini, P., Diaspro, A., and Luisi, P.L.
2007	Catalytic domain of restriction endonuclease BmrI as a cleavage module for engineering endonucleases with novel substrate specificities.	Nucl.Acids.Res.	Chan, S-H, Boa, Y., Ciszak, E., Laget, S.and Xu, S-Y.
2007	Dual-reporter assay using two secreted luciferase genes	Biotechniques	Wu, C., Suzuki-Ogoh, C., Ohmiya, Y.
2007	Engineering of the yeast Yarrowia lipolytica for the production of glycoproteins lacking the outer-chain mannose residues of N-glycans	Appl. Environ. Microbiol.	Song, Y., Choi, M.H., Park, J.N., Kim, M.W., Kim, E.J., Kang, H.A., Kim, J.Y.
2007	Dual-reporter assay using two secreted luciferase genes	Biotechniques	Wu, C., Suzuki-Ogoh, C. and Ohmiya, Y.
2007	Viral oncoproteins target the DNA methyltransferases	Oncogene	Burgers, W.A., Blanchon, L., Pradhan, S., de Launoit, Y., Kouzarides, T. and Fuks, F.
2007	Viral oncoproteins target the DNA methyltransferases	Oncogene	Burgers, W.A., Blanchon, L., Pradhan, S., de Launoit, Y., Kouzarides, T., Fuks,F.
2008	Ribosomal Synthesis of Peptidase-Resistant Peptides Closed by a Nonreducible Inter-Side-Chain Bond	ACS Chem. Biol.	Sako, Y., Goto, Y., Murakami, H., and Suga, H.
2008	Significance of the KLAC1 gene in glucosylceramide production by Kluyveromyces lactis	FEMS Yeast Res	Takakuwa, N., Oshnishi, M., and Oda, Y.
2008	Single molecule imaging of full protein synthesis by immobilized ribosomes	Nuc. Acid. Res.	Uemura, S., Iizuka, R., Ueno, T., Shimizu, Y., Taguchi, H., Ueda, T., Puglisi. J., and Funatsu, T.
2008	Crucial role of aspartic acid at position 265 in the CH2 domain for murine IgG2a and IgG2b Fc-associated effector functions	J Immunol.	Baudino L, Shinohara Y, Nimmerjahn F, Furukawa J, Nakata M, Martínez-Soria E, Petry F, Ravetch JV, Nishimura S, Izui S.
2008	Expression of a cytotoxic cationic antibacterial peptide in Escherichia coli using two fusion partners	Protein Exp. Purif.	Chen, Y. Q., et. al.
2008	Identification of two catalytic domains in a luciferase secreted by the copepod Gaussia princeps	Biochem Biophys Res Commun.	Inouye, S. and Sahara, Y.
2009	Tag-probe labeling methods for live-cell imaging of membrane proteins	Biochim. Biophys. Acta.	Uano Y. and Matsuzaki K.
2009	A new member of the Eschericia coli fad regulon: transcriptional regulation of fadM (ybaW)	J. Bacteriol.	Feng, Y. and Cronan, J. E.
2009	High-throughput quantitative analysis of plant N-glycan using a DNA sequencer	Biochem. Biophys. Res. Commun.	Lee, K.J., Jung, J.H., Lee, J.M., So, Y., Kwon, O., Callewaert, N., Kang, H.A., Ko, K., Oh, D.B.
2009	High-throughput quantitative analysis of plant N-glycan using a DNA sequencer	Biochem. Biophys. Res. Commun.	Lee, K.J., Jung, J.H., Lee, J.M,, So, Y., Kwon, O., Callewaert, N., Kang, H.A., Ko, K., Oh, D.B.
2004	Helicase-dependent isothermaol DNA amplification	EMBO Rep.	Vincent, M., Xu, Y.and Kong, H.
2004	Crystal Structure of BstYI at 1.85 Angstrom Resolution: A Thermophilic Restriction Endonuclease with Overlapping Specificities to BamHI and BglII.	J.Molec.Biol.	Townson, S.A., Samuelson, J.C., Vanamee, E.S., Edwards, T.A., Escalante, C.R., Xu, S.-Y.and Aggarwal, A.K.
2006	TspMI, a thermostable isoschizomer of XmaI (5'C/CCGGG3'): characterization and single molecule imaging with DNA.	Appl Microbiol.Biotechnol.	Parashar, V., Capalash, N., Xu, S.Y., Sako, Y.and Sharma, P.
2009	Regulation of endosomal clathrin and retromer-mediated endosome to Golgi retrograde transport by the J-domain protein RME-8.	EMBO J.	Shi, A., Sun, L., Banerjee, R., Tobin, M.Zhang, Y.and Grant, B.D.
2015	Specificity of the ModAll, ModA12 and ModD1 epigenetic regulator N6-adenine DNA methyltransferases of Neisseria Meningitidis	Nucleic Acids Res	Seib, K.L., Jen, F.E., Tan, A., Scott, A.L., Kumar, R., Power, P.M., Chen, L.T., Wu, H.J., Wang, A.H., Hill, D.M., Luyten, Y.A., Morgan, R.D., Roberts, R.J., Maiden, M.C., Boitano, M., Clark, T.A., Korlach, J., Rao, D.N. and Jennings, M.P.
2016	Novel m4C modification in type I restriction-modification systems.	Nucleic Acids Res.	Morgan, R.D., Luyten, Y.A., Johnson, S.A., Clough, E.M., Clark, T.A. and Roberts, R.J.
2017	DNA target recognition domains in the Type I restriction and modification systems of Staphylococcus aureus	Nucl. Acids Res.	Cooper, L.P., Roberts, G.A., White, J.H., Luyten, Y.A., Bower, E.K., Morgan, R.D., Roberts, R.J., Lindsay, J.A., Dryden, D.T.
2009	Rational Engineering of Type II Restriction Endonuclease DNA Binding and Cleavage Specificity.	Nucl.Acids.Res.	Morgan, R.D.and Luyten, Y.A.
2009	The MmeI Family: Type II Restriction-Modificaton Enzymes That Employ Single-Strand Modification for Host Protection.	Nucl.Acids.Res.	Morgan, R.D., Dwinell, E.A., Bhatia, T.K., Lang, E.M.and Luyten, Y.A.
2015	Upregulation of glycans containing 3' fucose in a subset of pancreatic cancers uncovered using fusion-tagged lectins.	J Proteome Res	Singh S., Kuntal P., Yadav J., Tang H., Partyka K., Kletter D., Hsueh P., Ensink E., Kc B., Hostetter G., Xu E.H., Bern M., Smith D.F., Mehta A.S., Brand R., Melcher K., Haab B.B.
2004	cDNA cloning and characterization of a secreted luciferase from the luminous Japanese ostracod, Cypridina noctiluca	Biosci. Biotechnol. Biochem.	Nakajima, Y., Kobayashi, K., Yamagashi, K., Enomoto, T., Ohmiya, Y.
2011	Kinetic study of de novo chromophore maturation of fluorescent proteins	Anal. Biochem.	Iizuka, R., Yamagishi-Shirasaki, M. and Funatsu, T.
2004	cDNA cloning and characterization of a secreted luciferase from the luminous Japanese ostracod, Cypridinanoctiluca	Biosci. Biotechnol. Biochem.	Nakajima, Y., Kobayashi, K., Yamagishi, K., Enomoto, T. and Ohmiya, Y.
2017	Serotyping dengue virus with isothermal amplification and a portable sequencer	Scientific Reports	Yamagishi, J., et al.
2011	Identification of a chitin-induced small RNA that regulates translation of the tfoX gene, encoding a positive regulator of natural competence in Vibrio cholerae	J Bacteriol.	Yamamoto, S., Izumiya, H., Mitobe, J., Morita, M., Arakawa, E., Ohnishi, M. and Watanabe, H.
2014	Multiplex genome engineering in human cells using all-in-one CRISPR/Cas9 vector system	Sci Rep	Sakuma T, Nishikawa A, Kume S, Chayama K, Yamamoto T	Golden Gate Assembly
2014	Validation of microinjection methods for generating knockout mice by CRISPR/Cas-mediated genome engineering	Sci Rep	Horii T, Arai Y, Yamazaki M, Morita S, Kimura M, Itoh M, Abe Y, Hatada I	Gibson Assembly®
2012	Functional importance of Dicer protein in the adaptive cellular response to hypoxia	J biol Chem.	Ho, J.J., Metcalf, J.L., Yan, M.S., Turgeon, P.J., Wang, J.J., chalsev, M., Petruzziello-Pellegrini, T.N., Tsui, A.K., He, J.Z., Dhamko, H., Man, H.S., Robb, G.B., Teh, B.,T., Ohh, M. and Marsden, P.A.
2015	Na, K-ATPase α3 is a death target of Alzheimer patient amyloid-β assembly.	Proc Natl Acad Sci U S A	Ohnishi T., Yanazawa M., Sasahara T., Kitamura Y., Hiroaki H., Fukazawa Y., Kii I., Nishiyama T., Kakita A., Takeda H., Takeuchi A., Arai Y., Ito A., Komura H., Hirao H., Satomura K., Inoue M., Muramatsu S., Matsui K., Tada M., Sato M., Saijo E., Shigemitsu Y., Sakai S., Umetsu Y., Goda N., Takino N., Takahashi H., Hagiwara M., Sawasaki T., Iwasaki G., Nakamura Y., Nabeshima Y., Teplow D.B., Hoshi M.
2016	Redox pathway sensing bile salts activates virulence gene expression in Vibrio cholerae.	Mol Microbiol.	Xue, Y., Tue, F., Shi, M., Wu, C.Q., Ren, G., Wang, X., Fang, W., Song, H. and Yang, M.
2008	Disruption of the OCH1 and MNN1 genes decrease N-glycosylation on glycoprotein expressed inKluyveromyces lactis	J. Biotechnol.	Liu, B., Gong, X., Chang, S., Yang, Y., Song, M., Duan, D., Wang, L., Ma, Q., and Wu, J.
2017	Methods for structural and functional analyses of intramembrane prenyltransferases in the UbiA superfamily	Methods Enzymol	Yang, Y., Ke, N., Liu, S., Li, W.
2009	The Kruppel-like zinc finger protein Glis3 directly and indirectly activates insulin gene transcription	Nucleic Acids Res.	Yang, Y., Chang, B.H., Samson, S.L., Li, M.V., Chan, L.
2009	The complete genome of Teredinibacter turnerae T7901: an intracellular endosymbiont of marine wood-boring bivalves (shipworms).	PLoS ONE	Yang, J.C., Madupu, R., Durkin, A.S., Ekborg, N.A., Pedamallu, C.S., Hostetler, J.B., Radune, D., Toms, B.S., Henrissat, B., Coutinho, P.M., Schwarz, S., Field, L., Trindade-Silva, A.E., Soares, C.A., Elshahawi, S., Hanora, A., Schmidt, E.W., Haygood, M.G., Posfai, J., Benner, J., Madinger, C., Nove, J., Anton, B., Chaudhary, K., Foster, J., Holman, A., Kumar, S., Lessard, P.A., Luyten, Y.A., Slatko, B., Wood, N., Wu, B., Teplitski, M., Mougous, J.D., Ward, N., Eisen, J.A., Badger, J.H.and Distel, D.L.
2016	Complete Genome and Methylome Sequences of Salmonella enterica subsp. enterica Serovar Panama (ATCC 7378) and Salmonella enterica subsp. enterica Serovar Sloterdijk (ATCC 15791).	Genome Announc.	Yao, K., Muruvanda, T., Roberts, R.J., Payne, J., Allard, M.W. and Hoffmann, M.
2016	Complete genome and methylome sequences of two Salmonella	Genome Announcements	Yao, K., Muruvanda, T., Roberts, R.J., Payne, J., Allard, M.W., Hoffmann, M.
2017	Complete genome and methylome sequences of Salmonella enterica subsp. enterica Serovars Typhimurium, Saintpaul, and Stanleyville from the SARA/SARB collection	Genome Announce	Yao, K., Roberts, R.J., Allard, M.W., Hoffmann, M.
2015	Development of a Rapid, Simple Method for Detecting Naegleria fowleri Visually in Water Samples by Loop-Mediated Isothermal Amplification (LAMP).	PLoS One	Aongart Mahittikorn, Hirotake Mori, Supaluk Popruk, Amonrattana Roobthaisong, Chantira Sutthikornchai, Khuanchai Koompapong, Sukhontha Siri, Yaowalark Sukthana, Duangporn Nacapunchai	Isothermal Amplification
2016	Increasing Genome Sampling and Improving SNP Genotyping for Genotyping-by-Sequencing with New Combinations of Restriction Enzymes	G3	Fu YB, Peterson G. W., Dong Y	Restriction Enzyme Digestion,Restriction Enzyme Digestion
2015	Genome-Wide Methylation Patterns in Salmonella enterica Subsp. enterica Serovars	PLoS One	Pirone-Davies, C., Hoffmann, M., Roberts, R.J., Muruvanda, T., Timme, R.E., Strain, E., Luo, Y., Payne, J., Luong, K., Song, Y., Tsai, Y.C., Boitano, M., Clark, T.A., Korlach, J., Evans, P.S., Allard, M.W.
2012	Thousands of missed genes found in bacterial genomes and their analysis with COMBRBiol Direct.EX.	Biol Direct.	Wood, D.E., Lin, H., Levy-Moonshine, A., Swaminathan, R., Chang, Y.C., Anton, B.P., Osmani, L., Steffen, M., Kasif, S. and Salzberg, S.L.
2014	Development of VHH Antibodies against Dengue Virus Type 2 NS1 and Comparison with Monoclonal Antibodies for Use in Immunological Diagnosis	PLoS One	Fatima A, Wang H, Kang K, Xia L, Wang Y, Ye W, Wang J, Wang X.	Phage Display
2003	Generation of the R2 subunit of ribonucleotide reductase by intein chemistry: insertion of 3-nitrotyrosine at residue 356 as a probe of the radical initiation process	Biochemistry	Yee, C.S., et al.
1995	Differential recognition of microfilarial chitinase, a transmission-blocking vaccine candidate antigen, by sera from patients with Brigian and Bancroftian filariasis.	Am.J.Trop.Med.Hyg.	Dissanayake, S., Perler, F.B., Xu, M., Southworth, M.W., Yee, C.K., Wang, S., Dreyer, G., Watawana, L., Kurniawan, L., Fuhrman, J.A., and Piessens, W.F.
2009	Sensitive in vivo imaging of T cells using membrane-bound gaussia princeps luciferase	Nat. Med.	Santos, E., Yeh, R., Lee, J., et al.
2010	Restrained expression, a method to overproduce toxic membrane proteins by exploiting operatorâ€“repressor interactions	Pro. Sci.	Narayanan, A., Ridilla, M. and Yernool, D.A.
2009	Sensitive in vivo imaging of T cells using membrane-bound gaussia princeps luciferase	Nat. Med.	Santos, E., Yes, R., Lee, J., et al
2014	Identification and Characterization of a Suite of Tumor Targeting Peptides for Non-Small Cell Lung Cancer	Sci Rep	McGuire MJ, Gray BP, Li S, Cupka D, Byers LA, Wu L, Rezaie S, Liu YH, Pattisapu N, Issac J, Oyama T, Diao L, Heymach JV, Xie XJ, Minna JD, Brown KC	Phage Display
2016	A novel enrichment strategy reveals unprecedented number of novel transcription start sites at single base resolution in a model prokaryote and the gut microbiome.	BMC Genomics	Ettwiller, L., Buswell, J., Yigit, E. and Schildkraut, I
2016	A microbiome DNA enrichment method for next-generation sequencing sample preparation	Curr Prot Mol Biol.	Yigit, E., Feehery, G.R., Langhorst, B.W., Stewart, F.J., Dimalanta, E.T., Pradhan, S., Slako, B., Gardner, A.F., McFarland, J., Sumner, C., Davis, T.B.
2014	Genome and Metagenome Sequencing: Using the Human Methyl-Binding Domain to Partition Genomic DNA Derived from Plant Tissues.	Applications in Plant Sciences	Erbay Yigit, David I. Hernandez, Joshua T. Trujillo, Eileen Dimalanta, and C. Donovan Bailey
1999	The Nuclear Receptor Superfamily Has Undergone Extensive Proliferation and Diversification in Nematodes.	Genome Res.	Sluder, A.E., Mathews, S.W., Hough, D., Yin, V.P.and Maina, C.V.
2004	Rescue of protein splicing activity from a Magnetospirillum magnetotacticum intein-like element.	Biochem.Soc.Trans.	Southworth, M.W., Yin, J.and Perler, F.B.
2005	Single-cell FRET imaging of transferrin receptor trafficking dynamics by Sfp-catalyzed, site-specific protein labeling	Chem. Biol	Yin J. et al.
2005	Labeling proteins with small molecules by site-specific posttranslational modification	J Am Chem Soc	Yin J. et al.
2005	Co-translational involvement of the chaperonin GroEL in the folding of newly translated polypeptides	J. Biol. Chem.	Ying, B.W., Taguchi, H., Kondo, M. and Ueda, T.
2013	Natural Zinc Ribbon HNH Endonucleases and Engineered Zinc Finger Nicking Endonuclease	Nucl Acids Res.	Xu, S.Y. and Gupta, Y.K.
2015	Structural basis of asymmetric DNA methylation and ATP-triggered long-range diffusion by EcoP15I	Nature Communications	Gupta, Y.K., Chan, S.H., Xu, S.Y., and Aggarwal, A.K.
2015	Expression and purification of single-chain Type IV restriction enzyme Eco94GmrSD and determination of it substrate preference	Scientific Reports	He, X., Hull, V., Thomas, J.A., Fu, X., Gidwani, S., Gupta, Y.K., Black, L.W. and Xu, S-Y.
2016	Structure of Type IIL Restriction-Modification Enzyme MmeI in Complex with DNA Has Implications for Engineering New Specificities.	PLoS Biol.	Callahan, S.J., Luyten, Y.A., Gupta, Y.K., Wilson, G.G., Roberts, R.J., Morgan, R.D. and Aggarwal, A.K.
2012	Structural insights into the assembly and shape of Type III restriction-modification (R-M) EcoP15I complex by small-angle X-ray scattering	J Mol biol.	Gupta, Y.K., Yang, L., Chan, S.H., Samuelson, J.C., Xu, S.-Y. and Aggarwal, A.K.
2016	Complete Genome Sequence and Methylome Analysis of Aeromonas hydrophila Strain YL17, Isolated from a Compost Pile.	Genome Announc.	Lim, Y.L., Roberts, R.J., Ee, R., Yin, W.F. and Chan, K.G.
2016	Novel Methyltransferase Recognition Motif Identified in Chania multitudinisentens RB-25(T) gen. nov., sp. nov.	Front Microbiol	Ee, R., Lim, Y.L., Yin, W.F., See-Too, W.S., Roberts, R.J. and Chan, K.G.
2015	Microscale purification of antigen-specific antibodies	Sci Rep	Brown EP., Normandin E., Osei-Owusu NY., Mahan AE., Chan YN., Lai JI., Vaccari M., Rao M., Franchini G., Alter G., Ackerman ME.
2015	Linkage disequilibrium network analysis (LDna) gives a global view of chromosomal inversions, local adaptation and geographic structure.	Mol Ecol Resour.	Kemppainen P, Knight CG, Sarma DK, Hlaing T, Prakash A, Maung Maung YN, Somboon P, Mahanta J, Walton C.
2001	Cell-free translation reconstituted with purified components	Nat. Biotech.	Shimizu, Y., Inoue, A., Tomari, Y., Suzuki, T., Yokogawa, T., Nishikawa, K. and Ueda, T.
2008	Comprehensive Analysis of the Effects of Eschericia coli ORF's on Protein Translation Reaction	Molecular & Cellular Proteomics	Kazuta, Y., Adachi, J., Matsuura, T., Ono, N., Mori, H. and Yomo T.
2015	Leaf margin phenotype-specific restriction-site-associated DNA-derived markers for pineapple (Ananas comosus L.).	Breed Sci.	Urasaki N, Goeku S, Kaneshima R, Takamine T, Tarora K, Takeuchi M, Moromizato C, Yonamine K, Hosaka F, Terakami S, Matsumura H, Yamamoto T, Shoda M.
2016	Simple and Highly Sensitive Molecular Diagnosis of Zika Virus by Lateral Flow Assays.	Anal Chem.	Lee D, Shin Y, Chung S, Hwang KS, Yoon DS, Lee JH
2010	Secretory production of recombinant proteins in Escherichia coli	Recent Patents on Biotechnology	Yoon, S.H., Kim, S.K., and Kim J.F.
2014	Integration of growth and patterning during vascular tissue formation in Arabidopsis	Science	Bert De Rybel, Milad Adibi, Alice S. Breda, Jos R. Wendrich, Margot E. Smit, Ondej Novk, Nobutoshi Yamaguchi, Saiko Yoshida, Gert Van Isterdael, Joakim Palovaara, Bart Nijsse, Mark V. Boekschoten, Guido Hooiveld, Tom Beeckman, Doris Wagner, Karin Ljung, Christian Fleck, Dolf Weijers	High-Fidelity PCR
2009	Sequence-independent and reversible photocontrol of transcription/expression systems using a photosensitive nucleic acid binder	Proc. Natl. Acad. Sci.	Estevez-Torres, A., Crozatier, C., Diguet, A., Hara, T., Saito, H., Yoshikawa, K., and Baigl, D.
2015	Rapid detection of equine coronavirus by reverse transcription loop-mediated isothermal amplification.	J Virol Methods	Manabu Nemoto, Yoshinori Morita, Hidekazu Niwa, Hiroshi Bannai, Koji Tsujimura, Takashi Yamanaka, Takashi Kondo	Isothermal Amplification
2016	Folate-/FAD-dependent tRNA methyltransferase from Thermus thermophilus regulates other modifications in tRNA at low temperatures.	Genes Cells	Yamagami, R., Tomikawa, C., Shigi, N., Kazayama, A., Asai, S.I., Takuma, H., Hirata, A., Fourmy, D., Asahara, H., Watanabe, K., Yoshizawa, S. and Hori, H.
2015	Rescue of cells from apoptosis increases DNA repair in UVB exposed cells: implications for the DNA damage response	Toxicol. Res.	Karbaschi, Mahsa., Macip, Salvador., Mistry, Vilas., Abbas, Hussein H.K., Delinassios, George J., Evans, Mark D., Young, Antony R., Cooke, Marcus S.
2005	Alternative luciferase for monitoring bacterial cells under adverse conditions.	Appl. Environ. Microbiol.	Wiles, S., Ferguson, K., Stefanidou, M., Young, D.B. and Robertson, B.D.
2005	Alternative luciferase for monitoring bacterial cells under adverse conditions	Appl. Environ. Microbiol.	Wiles, S., Ferguson, K., Stefanidou, M., Young, D.B. and Robertson, B.D.
2015	Production of bioactive chicken (Gallus gallus) follistatin-type proteins in E. coli	Sci Rep	Lee S.B., Park S.K., Kim Y.S.
2015	Targeted Glycoengineering Extends the Protein N-glycosylation Pathway in the Silkworm Silk Gland	Sci Rep	Asazuma HM., Sohn BH., Kim Y.S., Kuo CW., Khoo KH., Kucharski CA., Fraser MJ., Jarvis DL.
2013	Genome-wide hydroxymethylation tested using the HELP-GT assay shows redistribution in cancer	Nucleic Acids Research	Bhattacharyya, S., Yu, Y., Suzuki, M., Campbell, N., Mazdo, J., Vasanthakumar, A., et al.	5-hmC Detection & Analysis
2015	Real-Time Sequence-Validated Loop-Mediated Isothermal Amplification Assays for Detection of Middle East Respiratory Syndrome Coronavirus (MERS-CoV).	PLoS One	Sanchita Bhadra, Yu Sherry Jiang, Mia R Kumar, Reed F Johnson, Lisa E Hensley, Andrew D Ellington	Isothermal Amplification
2015	Sequence-tagged high-density genetic maps of Zoysia japonica provide insights into genome evolution in Chloridoideae.	Plant J.	Wang F, Singh R, Genovesi AD, Wai CM, Huang X, Chandra A, Yu Q.
2010	Expressed protein ligation for the preparation of fusion proteins with cell penetrating peptides for endotoxin removal and intracellular delivery	Biochim Biophys Acta	Yu, H. H., et. al.
2002	Efficient isolation of targeted Caenorhabditis elegans deletion strains using highly thermostable restriction endonucleases and PCR.	Nucl.Acids.Res.	Wei, A., Yuan, A., Fawcett, G., Butler, A., Davis, T., Xu, S.Y.and Salkoff, L.
2011	High-throughput analysis of the mutagenic and cytotoxic properties of DNA lesions by next-generation sequencing	Nuc. Acids Res.	Yuan, B., Wang, J., Cao, H. et al
2015	The RpoE Stress Response Pathway Mediates Reduction of the Virulence of Enteropathogenic Escherichia coli by Zinc.	Appl Environ Microbiol	Yuan Xue, Jossef Osborn, Anand Panchal, Jay L Mellies	High-Fidelity PCR
2016	Heme acquisition in the parasitic filarial nematode Brugia malayi.	FASEB J.	Luck AN, Yuan X, Voronin D, Slatko BE, Hamza I, Foster JM.
2016	Heme acquisition in the parasitic filarial nematode Brugia malayi.	FASEB J.	Luck, A.N., Yuan, X., Voronin, D., Slatko, B.E., Hamza, I. and Foster, J.M.
2010	Gene synthesis of the bovine prochymosin gene and high-level expression in Kluyvermyces lactis	Sheng Wu Gong Cheng Xue Bao	Yuan W, et al.
2016	A Genetic Map for the Only Self-Fertilizing Vertebrate.	G3 (Bethesda)	Kanamori A, Sugita Y, Yuasa Y, Suzuki T, Kawamura K, Uno Y, Kamimura K, Matsuda Y, Wilson CA, Amores A, Postlethwait JH, Suga K, Sakakura Y.
2008	Ribonucleases.	Curr.Protoc.Mol.Biol.	Nichols, N.M., and Yue, D.
2008	Template-Independent DNA Polymerases.	Curr.Protoc.Mol.Biol.	Yue, D., Tabor, S.and Nichols, N.M.
2013	The First Identification and Retrospective Study of Severe Fever With Thrombocytopenia Syndrome in Japan	The Journal of Infectious Diseases	Toru Takahashi, Ken Maeda, Tadaki Suzuki, Aki Ishido, Toru Shigeoka, Takayuki Tominaga, Toshiaki Kamei, Masahiro Honda, Daisuke Ninomiya, Takenori Sakai, Takanori Senba, Shozo Kaneyuki, Shota Sakaguchi, Akira Satoh, Takanori Hosokawa, Yojiro Kawabe, Shintaro Kurihara, Koichi Izumikawa, Shigeru Kohno, Taichi Azuma, Koichiro Suemori, Masaki Yasukawa, Tetsuya Mizutani, Tsutomu Omatsu, Yukie Katayama, Masaharu Miyahara, Masahito Ijuin, Kazuko Doi, Masaru Okuda, Kazunori Umeki, Tomoya Saito, Kazuko Fukushima, Kensuke Nakajima, Tomoki Yoshikawa, Hideki Tani, Shuetsu Fukushi, Aiko Fukuma, Momoko Ogata, Masayuki Shimojima, Noriko Nakajima, Noriyo Nagata, Harutaka Katano, Hitomi Fukumoto, Yuko Sato, Hideki Hasegawa, Takuya Yamagishi, Kazunori Oishi, Ichiro Kurane, Shigeru Morikawa, Masayuki Saijo
2014	A restriction enzyme-powered autonomous DNA walking machine: its application for a highly sensitive electrochemiluminescence assay of DNA	Nanoscale	Ying Chen, Yun Xiang, Ruo Yuan, Yaqin Chai
2016	One-pot system for synthesis, assembly, and display of functional single-span membrane proteins on oil-water interfaces	Proc. Natl Acad Sci USA	Yunker, P.J., Asahara, H., Hung, K.C., Landry, C., Arriaga, L.R., Akartuna, I., Heyman, J., Chong, S., Weitz, D.A.
1992	Identification of surrogate rodent hosts for larval Onchocerca lienalis and induction of protective immunity in a model system.	J Parasitol.	Abraham, D., Eberhard, M.L., Lange, A.M., Yutanawiboonchai, W., Perler, F.B.and Lok, J.B.
2011	Expression of recombinant cytochromes c in E.coli.	Methods Mol.Biol.	Londer, Y.Y.
2014	Gill bacteria enable a novel digestive strategy in a wood-feeding mollusk	Proc Natl Acad Sci.	O'Connor, R.M., Fung, J.M., Sharp, K.H., Benner, J.S., McClung, C., Cushing, S., Lamkin, E.R., Fomenkov, A.I., Henrissat, B., Londer, Y.Y., et al.
2002	Purification and initial crystallization studies of a DnaB intein from Synechocystis sp.PCC 6803.	Acta Crystallogr.D.Biol.Crystallogr.	Chen, X., Xu, M.-Q., Ding, Y., Ferrandon, S.and Rao, Z.
2002	Crystallographic study of a naturally occurring trans-splicing intein from Synechocystis sp.PCC 6803.	Acta Crystallogr.D.Biol.Crystallogr.	Chen, X., Xu, M.-Q., Ding, Y., Ferrandon, S.and Rao, Z.
2002	DNA Binding and Recognition by the IIs Restriction Endonuclease MboII.	J.Biol.Chem.	Soundararajan, M., Chang, Z., Morgan, R.D., Heslop, P.and Connolly, B.A.
2011	Optimization of Medium Composition for Production of Recombinant Calf Chymosin from Kluyveromyces lactis in Submerged Fermentation	J. of Northeast Agricultural University	Feng, Z., et al.
2011	Targeting the Wolbachia Cell Division Protein FtsZ as a New Approach for Antifilarial Therapy.	PLoS Neglected Tropical Diseases	Li, Z., Garner, A.L., Gloeckner, C., Janda, K.D.and Carlow, C.K.
2011	Disruption of PMR1 in Kluyveromyces lactis improves secretion of calf prochymosin	J. Sci. Food Agric.	Feng, Z., et al.
2011	COMBREX: a project to accelerate the functional annotation of prokaryotic genomes	Nucleic Acids Res.	Roberts, R.J., Chang, Y.C., Hu, Z., Rachlin, J.N., Anton, B.P., Pokrzywa, R.M., Choi, H.P., Faller, L.L., Guleria, J., Housman, G., Klitgord, N., Mazumdar, V., McGettrick, M.G., Osmani, L., Swaminathan, R., Tao, K.R., Letovsky, S., Vitkup, D., Segre, D., Salzberg, S.L., Delisi, C., Steffen, M. and Kasif, S.,
2003	Crystal structure of a mini-intein reveals a conserved catalytic module involved in side chain cyclization of asparagine during protein splicing.	J.Biol.Chem.	Ding, Y., Xu, M.-Q., Ghosh, I., Chen, X., Ferrandon, S., Lesage, G., Rao, Z.
1999	Thermal Asymmetric Interlaced PCR Amplification of YAC Insert End Fragments for Chromosome Walking in Plasmodium falciparum and Other A/T-Rich Genomes.	BioTechniques	Foster, J.M., Christodoulou, Z., Cowan, G.M.and Newbold, C.I.
2004	Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with Chromomethylase3.	EMBO J.	Lindroth, A.M., Shultis, D., Jasencakova, Z., Fuchs, J., Johnson, L., Scubert, D., Patnaik, D., Pradhan, S., Goodrich, J., Schubert, Il, Jenuwein, T., Khorasanizadeh, S.and Jacobsen, S.E
2004	Intein-mediated fusion expression, high efficient refolding, and one-step purification of gelonin toxin.	Protein Expr.Purif.	Guo, C.Y., Li, Z., Xu, M.Q., Wise, J.G., Trommer, W.E.and Yuan, J.
2013	A near-infrared fluorophore for live-cell super-resolution microscopy of cellular proteins.	Nature Chemistry	Lukinavicius, G., Umezawa, K., Olivier, N., Honigmann, A., Yang, G., Plas, T., Mueller, M., Reymond, L., Correa, I.R., Jr., Luo, Z.-G., Schultz, C., Lemke, E.A., Heppenstall, P., Eggeling, C., Manley, S. and Johnsson, K.
2013	The COMBREX project design methodology and initial results	PLOS ONE	Anton BP, Chang YC, Brown P, Choi HP, Faller LL, Guleria J, Hu Z, Klitgord N, Levy-Moonshine A, Maksad A, Mazumdar V, McGettrick M, Osmani L,Pokrzywa R, Rachlin J, Swaminathan R, Allen B, Housman G, Monahan C, Rochussen K, Tao K, Bhagwat AS, Brenner SE, Columbus L, de Crécy-Lagard V, Ferguson D, Fomenkov A, Gadda G, Morgan RD, Osterman AL, Rodionov DA, Rodionova IA, Rudd KE, Söll D, Spain J, Xu SY, Bateman A,Blumenthal RM, Bollinger JM, Chang WS, Ferrer M, Friedberg I, Galperin MY, Gobeill J, Haft D, Hunt J, Karp P, Klimke W, Krebs C, Macelis D, Madupu R, Martin MJ, Miller JH, O'Donovan C, Palsson B, Ruch P, Setterdahl A, Sutton G, Tate J, Yakunin A, Tchigvintsev D, Plata G, Hu J, Greiner R, Horn D,Sjölander K, Salzberg SL, Vitkup D, Letovsky S, Segrè D, DeLisi C, Roberts RJ, Steffen M, Kasif S.
2013	High-resolution enzymatic mapping of 5-hydroxymethylcytosine in mouse embryonic stem cells	Cell Rep.	Sun, Z. et al.
2015	Rapid Preparation of Released N-Glycans for HILIC Analysis Using a Labeling Reagent that Facilitates Sensitive Fluorescence and ESI-MS Detection	Anal Chem	Lauber, M.A., Yu, Y.Q., Brousmiche,D.W., Hua, Z., Koza, S.M., Magnelli, P., Guthrie, E., Taron, C.H. and Fountain, K.J.
2015	The foles of family B and d DNA polymerases in thermococcus species 9 degrees n okazaki fragment maturation	J Biol Chem	Greenough, L., Kelman, Z. and Gardner, A.F.
2015	SNP-based genetic linkage map of tobacco (Nicotiana tabacum L.) using next-generation RAD sequencing.	J Biol Res (Thessalon).	Xiao B, Tan Y, Long N, Chen X, Tong Z, Dong Y, Li Y.
2015	DNA polymerases in biotechnology	Front Microbiol.	Gardner, A.F. and Kelman, Z.
2015	The roles of family B and d DNA polymerases in thermococcus species 9 degrees n okazaki fragment maturation	J Biol Chem.	Greenough, L., Kelman, Z. and Gardner, A.F.
2015	Expanding the MDx toolbox for filarial diagnosis and surveillance	Trends Parasitol.	Alhassan, A., Li, Z., Poole, C.B. and Carlow, C.K.S.
2016	Comparison of a new visual isothermal nucleic acid amplification test with PCR and skin snip analysis for diagnosis of onchocerciasis in humans.	Mol Biochem Parasitol.	Alhassan, Aa, Osei-Atweneboana, M.Y., Kyeremeh, K.F., Poole, C.B., Li, Z., Tettevi, E., Tanner, N.A. and Carlow, C.K.
2016	COMBREX-DB: An experiment centered database of protein function: knowledge, predictions and knowledge gaps.	Nucl. Acids Res.	Chang, Y.-C., Hu, Z., Rachlin, J., Anton, B.P., Kasif, S., Roberts, R.J. and Steffen, M.
2016	High-temperature single-molecule kinetic analysis of thermophilic archaeal MCM helicases	Nucleic Acids Res.	Schermerhorn, K.M., Tanner, N., Kelman, Z. and Gardner, A.F.
2014	Structure of the Trehalose-6-phosphate Phosphatase from Brugia malayi Reveals Key Design Principles for Anthelmintic Drugs	PLoS Pathog	Farelli JD, Galvin BD, Li Z, Liu C, Aono M, Garland M, Hallett OE, Causey TB, Ali-Reynolds A, Saltzberg DJ, Carlow CK, Dunaway-Mariano D, Allen KN
2014	Transient accumulation of 5-carboxylcytosine indicates involvement of active demethylation in lineage specification of neural stem cells	Cell Rep	Wheldon LM, Abakir A, Ferjentsik Z, Dudnakova T, Strohbuecker S, Christie D, Dai N, Guan S, Foster JM, Corrêa IR Jr, Loose M, Dixon JE, Sottile V, Johnson AD, Ruzov A
2014	The uric acid transporter SLC2A9 is a direct target gene of the tumor suppressor p53 contributing to antioxidant defense	Oncogene	Itahana Y, Han R, Barbier S, Lei Z, Rozen S, Itahana K	Glycobiology
2014	Characterization of Family D DNA polymerase from Thermococcus sp. 9°N	Extremophiles	Greenough L, Menin JF, Desai NS, Kelman Z, Gardner AF
2014	A Target Repurposing Approach Identifies N-myristoyltransferase as a New Candidate Drug Target in Filarial Nematodes	PLoS Negl Trop Dis.	Galvin, B.D., Li, Z., Villemaine, E., Poole, C.B., Chapman, M.S., Pollastri, M.P., Wyatt, P.G., Carlow, C.K.
2014	DNA polymerases in biotechnology	Front Microbiol.	Gardner, A.F. and Kelman, Z.
2005	Structure of HinP1I endonuclease reveals a striking similarity to the monomeric restriction enzyme MspI.	Nucl.Acids.Res.	Yang, Z., Horton, J.R., Maunus, R., Wilson, G.G., Roberts, R.R.and Cheng, X.
2005	Crystal structures of an intein from the split dnaE gene of Synechocystis sp.PCC6803 reveal the catalytic model of intein without the penultimate histidine and the mechanism of zinc ion inhibition of protein splicing.	J.Mol.Biol.	Ping, S., Ye, S., Ferrandon, S., Evans, T.C., Xu, M-Q.and Rao, Z.
2010	Codon optimization of the calf prochymosin gene and its expression in Kluyveromyces lactis	World J. Microbiol. Biotechnol.	Feng, Z., et al.
1987	Isolation and Identification of restriction endonuclease BstFI	Nucl.Acids Res.	Kong, H and Chen, Z.
1994	VISA: Visual Sequence Analysis for the comparison of multiple amino acid sequences.	CABIOS	Posfai, J., Szaraz, Z., and Roberts, R.J.
1990	Field testing of monoclonal probe specific for infective larvae of human Brugian parasites.	Parasites: Molecular Biology, Drug and Vaccine Design	Carlow, C.K.S., Suwita, A., Bahang, Z., Purnomo, Partono, F., and Philipp, M.
1990	Identification of a new type II restriction endonuclease BsaAI.	Nucl.Acids Res.	Kong, H., Morgan, R.D., and Chen, Z.
1990	A new type II restriction endonuclease, BsmAI, from Bacillus stearothermophilus.	Nucl.Acids Res.	Kong, H., Morgan, R.D., and Chen, Z.
1989	Isolation and characterization of restriction endonuclease BstFI and BstSI from Bacillus stearothermophilus.	J.Fudan Univ.Natural Sci.	Chen Z., Kong, H.and Wang, L.
2012	Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing.	Nat Biotechnol.	Fang, G., Munera, D., Friedman, D.I., Mandlik, A., Chao, M.C., Banerjee, O., Feng, Z., Losic, B., Mahajan, M.C., Jabado, O.J., Deikus, G., Clark, T.A., Luong, K., Murray, I.A., Davis, B.M., Keren-Paz, A., Chess, A., Roberts, R.J., Korlach, J., Turner, S.W., Kumar, V., Waldor, M.K. and Schadt, E.E.
2017	The GAN exonuclease, or the flap endonuclease Fen1 and RNase HII are necessary for viability of Thermococcus kodakarensis	J. Bacteriol	Burkhart, B.W., Cubonova, L., Heider, M.R., Kelman, Z., Reeve, J.N., Santangelo, T.J.
2017	EcoBLMcrX, a classical modification-dependent restriction enzyme in Escherichia coli B: Characterization in vivo and in vitro with a new approach to cleavage site determination	PLoS One	Fomenkov, A., Sun, Z., Dila, D.K., Anton, B.P., Roberts, R.J., Raleigh, E.A.
2009	A chemical genetic method for generating bivalent inhibitors of protein kinases	J. Am. Chem. Soc.	Hill Z. B.
2009	Effect of temperature-shift strategy on recombinat chymosin of Kluyveromyces Lactis	Heilongjiang Animal Science and Veterinary Medicine	Feng, Z., et al
1988	Isolation and characterization of restriction endonuclease BstYI from Bacillus stearothermophilus.	FEBS Lett.	Chen Z.and Kong, H.
1987	Cloning, sequencing, in vivo promoter mapping, and expression in Escherichia coli of the gene for the HhaI methyltransferase.	J.Biol.Chem.	Caserta, M., Zacharias, W., Nwankwo, D., Wilson, G.G., and Wells, R.D.
	Identification of a cardiac specific protein transduction domain by in vivo biopanning using a M13 phage peptide display library in mice	PLoS One	Zahid, M. et al.
2016	Phenotypic and molecular analysis of the effect of 20-hydroxyecdysone on the human filarial parasite Brugia malayi.	Int J Parasitol	Mhashilkar, A.S., Adapa, S.R., Jiang, R.H., Williams, S.A., Zaky, W., Slatko, B.E., Luck, A.N., Moorhead, A.R. and Unnasch, T.R.
2016	Phenotypic and molecular analysis of the effect of 20 hydroxyecdysone on the human filarial parasite Brugia malayi	Int J Parasitol	Mhashilkar, A.S., Adapa, S.R., Jiang, R.H., Williams, S.A., Zaky, W., Slatko, B.E., Luck, A.N., Moorhead, A.R. and Unnasch, T.R.
2015	Multi-Dimensional Measurement of Antibody-Mediated Heterosubtypic Immunity to Influenza.	Sci Rep	Wang J., Hilchey SP., Hyrien O., Huertas N., Perry S., Ramanunninair M., Bucher D., Zand MS.
2015	CD24 tracks divergent pluripotent states in mouse and human cells.	Nat Commun	Shakiba N., White C.A., Lipsitz Y.Y., Yachie-Kinoshita A., Tonge P.D., Hussein S.M.I., Puri M.C., Elbaz J., Morrissey-Scoot J., Li M., Munoz J., Benevento M., Rogers I.M., Hanna J.H., Heck A.J.R., Wollscheid B., Nagy A., Zandstra P.W.
2002	Inhibition of poly(ADP-ribosyl)ation induces DNA hypermethylation: a possible molecular mechanism.	FASEB J.	Zardo, G., Reale, A., Passananti, C., Pradhan, S., Bountempo, S., DeMatteis, G., Adams, R.L.P.and Caiafa, P.
2017	Restriction endonuclease AgeI is a monomer which dimerizes to cleave DNA	Nucleic Acids Res.	Tamulaitiene, G., Jovaisaite, V., Tamulaitis, G., Songailiene, I., Manakova, E., Zaremba, M., Grazulis, S., Xu, S.Y., Siksnys, V.
2014	Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types.	Science	Jaitin, DA., Kenigsberg, E., Keren-Shaul, H., Elefant, N., Paul, F., Zaretsky, I., Mildner, A., Cohen, N., Jung, S., Tanay, A. and Amit, I.
2015	Rational design of 'controller cells' to manipulate protein and phenotype expression.

Contact Information

Contact Information

Publications

Videos

Basic Research

Search Our Publications

Your search returned 1795 results.