Publications

Publications

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YearTitleJournalAuthorsApplication(s)
2010USER friendly DNA recombination (USERec): a simple and flexible near homology-independent method for gene library constructionProtein Eng Des SelVilliers BR, Stein V, Hollfelder FUSER™ Cloning
2014Rapid and Efficient Assembly of Transcription Activator-Like Effector Genes by USER CloningJ Genet GenomicsWang S, Li W, Wang S, Hu BUSER™ Cloning
2014A versatile system for USER cloning-based assembly of expression vectors for mammalian cell engineeringPLoS OneLund AM, Kildegaard HF, Petersen MB, Rank J, Hansen BG, Andersen MR, Mortensen UHUSER™ Cloning
2015Rapid isolation and single-molecule analysis of ribonucleoproteins from cell lysate by SNAP-SiMPullRNAMargaret L Rodgers, Joshua Paulson, Aaron A HoskinsSNAP Surface, SNAP Cell
2015Antigenic properties of the human immunodeficiency virus envelope glycoprotein gp120 on virions bound to target cellsPLoS PathogMeron Mengistu, Krishanu Ray, George K Lewis, Anthony L DeVicoSNAP Surface, SNAP Cell
2015Dissecting the molecular properties of prokaryotic flotillinsPLoS OneJuri Nio Bach, Marc BramkampSNAP Surface, SNAP Cell
2015Dynamic caveolae exclude bulk membrane proteins and are required for sorting of excess glycosphingolipidsNat CommunElena Shvets, Vassilis Bitsikas, Gillian Howard, Carsten Gram Hansen, Benjamin J NicholsSNAP Surface
2015Kinetic pathway of 40S ribosomal subunit recruitment to hepatitis C virus internal ribosome entry siteProc Natl Acad Sci U S AGabriele Fuchs, Alexey N Petrov, Caleb D Marceau, Lauren M Popov, Jin Chen, Sen E O'Leary, Richard Wang, Jan E Carette, Peter Sarnow, Joseph D PuglisiSNAP Cell, SNAP Surface
2014Consequences of the disease-related L78R mutation for dimerization and activity of STAT3J Cell SciDomoszlai T, Martincuks A, Fahrenkamp D, Schmitz-Van de Leur H, Küster A, Müller-Newen GSNAP Cell, Cellular Analysis
2015Stem cells. Asymmetric apportioning of aged mitochondria between daughter cells is required for stemnessScienceP, Katajisto., Dohla, J., Chaffer, CL., Pentinmikko, N., Marjanovic, N., Igbal, S., Zoncu, R., Chen, W., Weinberg, RA., Sabatini, DM.SNAP Cell
2015CRL4RBBP7 is required for efficient CENP-A deposition at centromeresJ Cell SciJulien Mouysset, Samuel Gilberto, Michelle G Meier, Fabienne Lampert, Mukta Belwal, Patrick Meraldi, Matthias PeterSNAP Cell
2014Ubiquity and diversity of human-associated demodex mites.PLoS OneMegan S Thoemmes, Daniel J Fergus, Julie Urban, Michelle Trautwein, Robert R DunnRoutine PCR
2015Bias in ligation-based small RNA sequencing library construction is determined by adaptor and RNA structurePLoS OneFuchs, R.T., Sun, Z., Zhuang, F., et al.RNA Analysis
2016Increasing Genome Sampling and Improving SNP Genotyping for Genotyping-by-Sequencing with New Combinations of Restriction Enzymes G3Fu YB, Peterson G. W., Dong YRestriction Enzyme Digestion, Restriction Enzyme Digestion
2014The other face of restriction: modification-dependent enzymes.Nucleic Acids ResLoenen, W.A., Raleigh, E.A.Restriction Enzyme Digestion, Restriction Enzyme Digestion
2011Targeting choroid plexus epithelia and ventricular ependyma for drug delivery to the central nervous systemBMC NeurosciGonzalez, A.M. et al.Phage Display
2010Peptides from phage display library modulate gene expression in mesenchymal cells and potentiate osteogenesis in unicortical bone defectsVis. Exp.Balian, G. et al.Phage Display
2010Phage display probes for imaging early response to bevacizumab treatmentAmino AcidsCao, Q. et al.Phage Display
2013Targeted delivery of proapoptotic peptides to tumor-associated macrophages improves survivalProc. Natl. Acad. Sci. Cieslewicz, M. et alPhage Display
2013Targeted drug delivery systems mediated by a novel peptide in breast cancer therapy and imagingPLoS OneLu, R.-M. et alPhage Display
2014Prospective identification of parasitic sequences in phage display screensNucleic Acids ResMatochko WL, Cory Li S, Tang SK, Derda RPhage Display
2014Serine and proline-rich ligands enriched via phage-display technology show preferential binding to BCR/ABL expressing cellsHematol Oncol Stem Cell TherShires K, Shankland I, Mowla S, Njikan S, Jaymacker J, Novitzky NPhage Display
2014Therapeutic epitopes of Leptospira LipL32 protein and their characteristicsProtein Eng Des SelManeewatch S, Adisakwattana P, Chaisri U, Saengjaruk P, Srimanote P, Thanongsaksrikul J, Sakolvaree Y, Poungpan P, Chaicumpa WPhage Display
2014DevR (DosR) mimetic peptides impair transcriptional regulation and survival of Mycobacterium tuberculosis under hypoxia by inhibiting the autokinase activity of DevS sensor kinaseBMC MicrobiolKaur K, Taneja NK, Dhingra S, Tyagi JSPhage Display
2014Development of VHH Antibodies against Dengue Virus Type 2 NS1 and Comparison with Monoclonal Antibodies for Use in Immunological DiagnosisPLoS OneFatima A, Wang H, Kang K, Xia L, Wang Y, Ye W, Wang J, Wang X.Phage Display
2014Biomimetic Magnetite Formation From Biocombinatorial Approaches to Mineralization EffectsLangmuirBaumgartner J, Carillo MA, Eckes KM, Werner P, Faivre D.Phage Display
2014A trimeric lipoprotein assists in trimeric autotransporter biogenesis in enterobacteriaJ Biol ChemGrin I, Hartmann MD, Sauer G, Hernandez Alvarez B, Schütz M, Wagner S, Madlung J, Macek B, Felipe-Lopez A, Hensel M, Lupas A, Linke DPhage Display
2014Identification and characterization of mutant clones with enhanced propagation rates from phage-displayed peptide librariesAnal BiochemNguyen KT, Adamkiewicz MA, Hebert LE, Zygiel EM, Boyle HR, Martone CM, Meléndez-Ríos CB, Noren KA, Noren CJ, Hall MFPhage Display
2014Identification and Characterization of a Suite of Tumor Targeting Peptides for Non-Small Cell Lung CancerSci RepMcGuire MJ, Gray BP, Li S, Cupka D, Byers LA, Wu L, Rezaie S, Liu YH, Pattisapu N, Issac J, Oyama T, Diao L, Heymach JV, Xie XJ, Minna JD, Brown KCPhage Display
Selection of a mimotope peptide of S-adenosyl-l-homocysteine and its application in immunoassaysMoleculesWu, C. and Tzertzinis, G.Phage Display
2015Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiontBMC GenomicsLuck, A.N., Anderson, K.G., McClung, C.M., VerBerkmoes, N.C., Foster, J.M., Michalski, M.L. and Slatko, B.E. NEBNext® Sample Preparation for Next Generation Sequencing
2015Rapid detection of equine coronavirus by reverse transcription loop-mediated isothermal amplification.J Virol MethodsManabu Nemoto, Yoshinori Morita, Hidekazu Niwa, Hiroshi Bannai, Koji Tsujimura, Takashi Yamanaka, Takashi KondoIsothermal Amplification
2015Real-Time Sequence-Validated Loop-Mediated Isothermal Amplification Assays for Detection of Middle East Respiratory Syndrome Coronavirus (MERS-CoV).PLoS OneSanchita Bhadra, Yu Sherry Jiang, Mia R Kumar, Reed F Johnson, Lisa E Hensley, Andrew D EllingtonIsothermal Amplification
2015Comparison of loop-mediated isothermal amplification and real-time PCR for detecting Bordetella pertussis.J Med MicrobiolMohammad Reza Allahyar Torkaman, Kazunari Kamachi, Vajihe Sadat Nikbin, Masoumeh Nakhost Lotfi, Fereshteh ShahcheraghiIsothermal Amplification
2015Clinical Evaluation of a Loop-Mediated Isothermal Amplification (LAMP) Assay for Rapid Detection of Neisseria meningitidis in Cerebrospinal Fluid.PLoS OneDoKyung Lee, Eun Jin Kim, Paul E Kilgore, Soon Ae Kim, Hideyuki Takahashi, Makoto Ohnishi, Dang Duc Anh, Bai Qing Dong, Jung Soo Kim, Jun Tomono, Shigehiko Miyamoto, Tsugunori Notomi, Dong Wook Kim, Mitsuko SekiIsothermal Amplification
2015Bovine embryo sex determination by multiplex loop-mediated isothermal amplification.TheriogenologyTrisadee Khamlor, Petai Pongpiachan, Rangsun Parnpai, Kanchana Punyawai, Siwat Sangsritavong, Nipa ChokesajjawateeIsothermal Amplification
2015Development of a Rapid, Simple Method for Detecting Naegleria fowleri Visually in Water Samples by Loop-Mediated Isothermal Amplification (LAMP).PLoS OneAongart Mahittikorn, Hirotake Mori, Supaluk Popruk, Amonrattana Roobthaisong, Chantira Sutthikornchai, Khuanchai Koompapong, Sukhontha Siri, Yaowalark Sukthana, Duangporn NacapunchaiIsothermal Amplification
2014Loop-mediated isothermal amplification for detection of nucleic acidsCurr Protoc Mol BiolTanner NA, Evans TC Jr.Isothermal Amplification
2015Iron-induced Local Complement Component 3 (C3) Up-regulation via Non-canonical Transforming Growth Factor (TGF)-β Signaling in the Retinal Pigment Epithelium.J Biol ChemYafeng Li, Delu Song, Ying Song, Liangliang Zhao, Natalie Wolkow, John W Tobias, Wenchao Song, Joshua L DunaiefHigh-Fidelity PCR, Site Directed Mutagenesis
2015Rational design of 'controller cells' to manipulate protein and phenotype expression.Metab EngAmin Zargar, David N Quan, Milad Emamian, Chen Yu Tsao, Hsuan-Chen Wu, Chelsea R Virgile, William E BentleyHigh-Fidelity PCR
2015Selective expression of sense and antisense transcripts of the sushi-ichi-related retrotransposon - derived family during mouse placentogenesis.RetrovirologyChristine Henke, Pamela L Strissel, Maria-Theresa Schubert, Megan Mitchell, Claus C Stolt, Florian Faschingbauer, Matthias W Beckmann, Reiner StrickHigh-Fidelity PCR
2015The RpoE Stress Response Pathway Mediates Reduction of the Virulence of Enteropathogenic Escherichia coli by Zinc.Appl Environ MicrobiolYuan Xue, Jossef Osborn, Anand Panchal, Jay L MelliesHigh-Fidelity PCR
2015Sul1 and Sul2 Sulfate Transceptors Signal to Protein Kinase A upon Exit of Sulfur Starvation.J Biol ChemHarish Nag Kankipati, Marta Rubio-Texeira, Dries Castermans, George Diallinas, Johan M TheveleinHigh-Fidelity PCR
2015Activation and enhancement of Fredericamycin A production in deepsea-derived Streptomyces somaliensis SCSIO ZH66 by using ribosome engineering and response surface methodology.Microb Cell FactYonghe Zhang, Huiming Huang, Shanshan Xu, Bo Wang, Jianhua Ju, Huarong Tan, Wenli LiHigh-Fidelity PCR
2015An alternative pluripotent state confers interspecies chimaeric competency.NatureJun Wu, Daiji Okamura, Mo Li, Keiichiro Suzuki, Chongyuan Luo, Li Ma, Yupeng He, Zhongwei Li, Chris Benner, Isao Tamura, Marie N Krause, Joseph R Nery, Tingting Du, Zhuzhu Zhang, Tomoaki Hishida, Yuta Takahashi, Emi Aizawa, Na Young Kim, Jeronimo Lajara, Pedro Guillen, Josep M Campistol, Concepcion Rodriguez Esteban, Pablo J Ross, Alan Saghatelian, Bing Ren, Joseph R Ecker, Juan Carlos Izpisua BelmonteHigh-Fidelity PCR
2015Alternative 3' UTRs act as scaffolds to regulate membrane protein localization.NatureBinyamin D Berkovits, Christine MayrHigh-Fidelity PCR
2015Functional Characterization of Cucurbitadienol Synthase and Triterpene Glycosyltransferase Involved in Biosynthesis of Mogrosides from Siraitia grosvenorii.Plant Cell PhysiolLonghai Dai, Can Liu, Yueming Zhu, Jiangsheng Zhang, Yan Men, Zeng Yan, Yuanxia SunHigh-Fidelity PCR
2014Procerain B, a cysteine protease from Calotropis procera, requires N-terminus pro-region for activity: cDNA cloning and expression with pro-sequence.Protein Expr PurifVidhyadhar Nandana, Sushant Singh, Abhay Narayan Singh, Vikash Kumar DubeyHigh-Fidelity PCR
2014Type II Cadherins Guide Assembly of a Direction-Selective Retinal Circuit.CellXin Duan, Arjun Krishnaswamy, Irina De la Huerta, Joshua R SanesHigh-Fidelity PCR
2014The ambrosia symbiosis is specific in some species and promiscuous in others: evidence from community pyrosequencing.ISME JMartin Kostovcik, Craig C Bateman, Miroslav Kolarik, Lukasz L Stelinski, Bjarte H Jordal, Jiri HulcrHigh-Fidelity PCR
2014Integration of growth and patterning during vascular tissue formation in ArabidopsisScienceBert De Rybel, Milad Adibi, Alice S. Breda, Jos R. Wendrich, Margot E. Smit, Ondej Novk, Nobutoshi Yamaguchi, Saiko Yoshida, Gert Van Isterdael, Joakim Palovaara, Bart Nijsse, Mark V. Boekschoten, Guido Hooiveld, Tom Beeckman, Doris Wagner, Karin Ljung, Christian Fleck, Dolf WeijersHigh-Fidelity PCR
2014Modular assembly of designer PUF proteins for specific post-transcriptional regulation of endogenous RNAJ Biol EngAbil Z, Denard CA, Zhao HGolden Gate Assembly, DNA Assembly and Cloning
2014A Modular Plasmid Assembly Kit for Multigene Expression, Gene Silencing and Silencing Rescue in PlantsPLoS OneBinder A, Lambert J, Morbitzer R, Popp C, Ott T, Lahaye T, Parniske MGolden Gate Assembly, DNA Assembly and Cloning
2013GoldenBraid 2.0: A Comprehensive DNA Assembly Framework for Plant Synthetic BiologyPlant PhysiologyAlejandro Sarrion-Perdigones, Marta Vazquez-Vilar, Jorge Palací, Bas Castelijns, Javier Forment, Peio Ziarsolo, José Blanca, Antonio Granell, Diego OrzaezGolden Gate Assembly
2014Multiplex genome engineering in human cells using all-in-one CRISPR/Cas9 vector systemSci RepSakuma T, Nishikawa A, Kume S, Chayama K, Yamamoto TGolden Gate Assembly
2014Phosphorylation decreases ubiquitylation of the thiazide-sensitive cotransporter NCC and subsequent clathrin-mediated endocytosisJ Biol ChemRosenbaek LL, Kortenoeven ML, Aroankins TS, Fenton RAGlycobiology
2014Role of lipid rafts and GM1 in the segregation and processing of prion proteinPLoS OneBotto L, Cunati D, Coco S, Sesana S, Bulbarelli A, Biasini E, Colombo L, Negro A, Chiesa R, Masserini M, Palestini PGlycobiology
2014Mutations in four glycosyl hydrolases reveal a highly coordinated pathway for rhodopsin biosynthesis and N-glycan trimming in Drosophila melanogasterPLoS GenetRosenbaum EE, Vasiljevic E, Brehm KS, Colley NJGlycobiology
2014Tuning the electrical properties of the heart by differential trafficking of KATP ion channel complexesJ Cell SciArakel EC, Brandenburg S, Uchida K, Zhang H, Lin YW, Kohl T, Schrul B, Sulkin MS, Efimov IR, Nichols CG, Lehnart SE, Schwappach BGlycobiology
2014The uric acid transporter SLC2A9 is a direct target gene of the tumor suppressor p53 contributing to antioxidant defenseOncogeneItahana Y, Han R, Barbier S, Lei Z, Rozen S, Itahana KGlycobiology
2014The N-terminal domain modulates α-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA) receptor desensitizationJ Biol ChemMöykkynen T, Coleman SK, Semenov A, Keinänen KGlycobiology
2014A continuous-exchange cell-free protein synthesis system based on extracts from cultured insect cellsPLoS OneStech M, Quast RB, Sachse R, Schulze C, Wüstenhagen DA, Kubick SGlycobiology
2014An RNA aptamer that specifically binds to the glycosylated hemagglutinin of avian influenza virus and suppresses viral infection in cellsPLoS OneKwon HM, Lee KH, Han BW, Han MR, Kim DH, Kim DEGlycobiology
2014Identification and Characterization of a Proteolytically Primed Form of the Murine Coronavirus Spike Proteins after Fusion with the Target CellJ VirolWicht O, Burkard C, de Haan CA, van Kuppeveld FJ, Rottier PJ, Bosch BJGlycobiology
2014Gene and protein sequence optimization for high-level production of fully active and aglycosylated lysostaphin in Pichia pastorisAppl Environ MicrobiolZhao H, Blazanovic K, Choi Y, Bailey-Kellogg C, Griswold KEGlycobiology
2014G-CSF does not influence C2C12 myogenesis despite receptor expression in healthy and dystrophic skeletal muscleFront PhysiolWright CR, Brown EL, Della-Gatta PA, Ward AC, Lynch GS, Russell APGlycobiology
2014Functional characterization improves associations between rare non-synonymous variants in CHRNB4 and smoking behaviorPLoS OneHaller G, Li P, Esch C, Hsu S, Goate AM, Steinbach JHGlycobiology
2009Topological studies of hSVCT1, the human sodium-dependent vitamin C transporter and the influence of N-glycosylation on its intracellular targetingExp. Cell Res. Velho, A.M., Jarvis, S.M. Glycobiology
2009Site specific conjugation of fluoroprobes to the remodeled Fc N-glycans of monoclonal antibodies using mutant glycosyltransferases: application for cell surface antigen detection Bioconjug. Chem. Boeggeman, E., Ramakrishnan, B., Pasek, M., Manzoni, M., Puri, A., Loomis, K.H., Waybright, T.J., Qasba, P.K. Glycobiology
2009Characterization of N-linked glycosylation on recombinant glycoproteins produced in Pichia pastoris using ESI-MS and MALDI-TOFMethods Mol. Biol. Gong, B., Cukan, M., Fisher, R., Li, H., Stadheim, T.A., Gerngross, T. Glycobiology
2009A single nucleotide polymorphism in the human serotonin transporter introduces a new site for N-linked glycosylationNeuropharmacology Rasmussen, T.N., Plenge, P., Bay, T., Egebjerg, J., Gether, U. Glycobiology
2009Comparison of distinct protein isoforms of the receptor for advanced glycation end-products expressed in murine tissues and cell linesCell Tissue Res. Gefter, J.V., Shaufl, A.L., Fink, M.P., Delude, R.L. Glycobiology
2008The way forward, enhanced characterization of therapeutic antibody glycosylation: comparison of three level mass spectrometry-based strategiesJ. Chromatogr. B Analyt. Technol. Biomed. Life Sci.Wagner-Rousset, E., Bednarczyk, A., Bussat, M.C., Colas, O., Corvaïa, N., Schaeffer, C., Van Dorsselaer, A., Beck, A.Glycobiology
2008Two-dimensional gel-based approaches for the assessment of N-Linked and O-GlcNAc glycosylation in human and simian immunodeficiency virusesProteomicsGraham, D.R., Mitsak, M.J., Elliott, S.T., Chen, D., Whelan, S.A., Hart, G.W., Van Eyk, J.E. Glycobiology
1997Discovery and Uses of Novel GlycosidasesTechniques in GlycobiologyWong-Madden, S.T., Landry, D., and Guthrie, E.P. Glycobiology
2014Neurospora crassa Female Development Requires the PACC and Other Signal Transduction Pathways, Transcription Factors, Chromatin Remodeling, Cell-To-Cell Fusion, and AutophagyPLoS OneChinnici JL, Fu C, Caccamise LM, Arnold JW, Free SJGibson Assembly®,
2013Rapid, modular and reliable construction of complex mammalian gene circuitsNucleic Acids ResGuye P, Li Y, Wroblewska L, Duportet X, Weiss RGibson Assembly®
2013The oil palm SHELL gene controls oil yield and encodes a homologue of SEEDSTICKNatureSingh R, Low ET, Ooi LC, Ong-Abdullah M, Ting NC, Nagappan J, Nookiah R, Amiruddin MD, Rosli R, Manaf MA, Chan KL, Halim MA, Azizi N, Lakey N, Smith SW, Budiman MA, Hogan M, Bacher B, Van Brunt A, Wang C, Ordway JM, Sambanthamurthi R, Martienssen RAGibson Assembly®
2013A membrane-bound NAC transcription factor, ANAC017, mediates mitochondrial retrograde signaling in ArabidopsisPlant CellNg S, Ivanova A, Duncan O, Law SR, Van Aken O, De Clercq I, Wang Y, Carrie C, Xu L, Kmiec B, Walker H, Van Breusegem F, Whelan J, Giraud EGibson Assembly®
2013Identification of new proteins that modulate the germination of spores of bacillus speciesJ BacteriolRamirez-Peralta A, Gupta S, Butzin XY, Setlow B, Korza G, Leyva-Vazquez MA, Christie G, Setlow PGibson Assembly®
2013Efficient genome editing in Caenorhabditis elegans by CRISPR-targeted homologous recombinationNucleic Acids ResChen C, Fenk LA, de Bono MGibson Assembly®
2013Genome engineering in Saccharomyces cerevisiae using CRISPR-Cas systemsNucleic Acids ResDiCarlo JE, Norville JE, Mali P, Rios X, Aach J, Church GMGibson Assembly®
2014Molecular evolution of the Yap/Yorkie proto-oncogene and elucidation of its core transcriptional programMol Biol EvolIkmi A, Gaertner B, Seidel C, Srivastava M, Zeitlinger J, Gibson MCGibson Assembly®
2014Molecular evolution of the Yap/Yorkie proto-oncogene and elucidation of its core transcriptional programMol Biol EvolIkmi A, Gaertner B, Seidel C, Srivastava M, Zeitlinger J, Gibson MCGibson Assembly®
2014Transcriptomic analysis of carboxylic acid challenge in Escherichia coli: beyond membrane damagePLoS OneRoyce LA, Boggess E, Fu Y, Liu P, Shanks JV, Dickerson J, Jarboe LRGibson Assembly®
2014Validation of microinjection methods for generating knockout mice by CRISPR/Cas-mediated genome engineeringSci RepHorii T, Arai Y, Yamazaki M, Morita S, Kimura M, Itoh M, Abe Y, Hatada IGibson Assembly®
2014The Serine-Threonine Protein Kinase PAK4 Is Dispensable in Zebrafish: Identification of a Morpholino-Generated PseudophenotypePLoS OneLaw SH, Sargent TDGibson Assembly®
2014A Modified Janus Cassette (Sweet Janus) to Improve Allelic Replacement Efficiency by High-Stringency Negative Selection in Streptococcus pneumoniaePLoS OneLi Y, Thompson CM, Lipsitch MGibson Assembly®
2014Identification and Biosynthesis of a Novel Xanthomonadin-Dialkylresorcinol-Hybrid from Azoarcus sp. BH72PLoS OneSchöner TA, Fuchs SW, Reinhold-Hurek B, Bode HBGibson Assembly®
2014Insights into bacterial CO2 metabolism revealed by the characterization of four carbonic anhydrases in Ralstonia eutropha H16AMB ExpressGai CS, Lu J, Brigham CJ, Bernardi AC, Sinskey AJGibson Assembly®
2014Impact of a transposon insertion in phzF2 on the specialized metabolite production and interkingdomJ BacteriolPhelan VV, Moree WJ, Aguilar J, Cornett DS, Koumoutsi A, Noble SM, Pogliano K, Guerrero CA, Dorrestein PCGibson Assembly®
2014Insights into the initiation of JC virus DNA replication derived from the crystal structure of the T-antigen origin binding domainPLoS PathogMeinke G, Phelan PJ, Kalekar R, Shin J, Archambault J, Bohm A, Bullock PAGibson Assembly®
2014Engineering nicking enzymes that preferentially nick 5-methylcytosine-modified DNANucleic Acids ResGutjahr A, Xu SYGibson Assembly®
2014Engineering hydrogen gas production from formate in a hyperthermophile by heterologous production of an 18-subunit membrane-bound complexJ Biol ChemLipscomb GL, Schut GJ, Thorgersen MP, Nixon WJ, Kelly RM, Adams MWGibson Assembly®
2014Generation of West Nile virus infectious clones containing amino acid insertions between capsid and capsid anchorVirusesVandergaast R, Hoover LI, Zheng K, Fredericksen BLGibson Assembly®
2014Fusion of catalytically inactive Cas9 to FokI nuclease improves the specificity of genome modificationNat BiotechnolGuilinger JP, Thompson DB, Liu DRGibson Assembly®
2015TALEN-mediated targeting of HPV oncogenes ameliorates HPV-related cervical malignancy.J Clin InvestZheng Hu, Wencheng Ding, Da Zhu, Lan Yu, Xiaohui Jiang, Xiaoli Wang, Changlin Zhang, Liming Wang, Teng Ji, Dan Liu, Dan He, Xi Xia, Tao Zhu, Juncheng Wei, Peng Wu, Changyu Wang, Ling Xi, Qinglei Gao, Gang Chen, Rong Liu, Kezhen Li, Shuang Li, Shixuan Wang, Jianfeng Zhou, Ding Ma, Hui Wang Genome Editing
2014Enhanced gene disruption by programmable nucleases delivered by a minicircle vector.Gene TherA-Bk Dad, S Ramakrishna, M Song, H KimGenome Editing
2012Sensitive detection of chromatin coassociations using enhanced chromosome conformation capture on chipNat ProtocSexton T, Kurukuti S, Mitchell JA, Umlauf D, Nagano T, Fraser PEpigenetics, Restriction Enzymes for Epigenetics, DNA Methylation Analysis
2014Analysis of hundreds of cis-regulatory landscapes at high resolution in a single, high-throughput experimentNat GenetHughes J.R., Roberts N., McGowan S., Hay D., Giannoulatou E., Lynch M., De Gobbi M., Taylor S., Gibbons R., Higgs D.R.Epigenetics, Restriction Enzymes for Epigenetics, DNA Methylation Analysis
2016Genetics: profiling DNA methylation and beyondNature MethodsMarx V.Epigenetics, Restriction Enzymes for Epigenetics
2015A simple bridging flocculation assay for rapid, sensitive and stringent detection of gene specific DNA methylationSci RepWee E., Ngo T., Trau M.Epigenetics, DNA Enrichment
2015Depletion of CG-Specific Methylation in Mycoplasma hyorhinis Genomic DNA after Host Cell InvasionPLoS OneChernov AV., Reyes L., Peterson S., Strongin AY.Epigenetics, Bisulfite Conversion
2011Hypomethylation of a LINE-1 Promoter Activates an Alternate Transcript of the MET Oncogene in Bladders with CancerPLoS Genet. Wolff, E.M. et al. Epigenetics
2016Single-cell 5hmC sequencing reveals chromosome-wide cell-to-cell variability and enables lineage reconstructionNature BiotechnologyMooijman D, Dey S S, Boisset JC, Crosetto N, van Oudenaarden AEpigenetics
2015Binding of 14-3-3 reader proteins to phosphorylated DNMT1 facilitatesNucleic Acids ResEstève P., Zhang G., Ponnaluri V., Kanneganti Epigenetics
2015Hepatic Stellate Cell Transdifferentiation Involves Genome-Wide Remodeling of the DNA Methylation LandscapeJ HepatolPage A., Paoli P., Salvador E., White S., French J., Mann J.Epigenetics
2015GADD45a physically and functionally interacts with TET1PublicationDifferentiationKienhöfer S., Musheev M., Stapf U., Helm M., Schomacher L., Niehrs C., Schäfer A.Epigenetics
2014Myogenic differential methylation: diverse associations with chromatin structureBiology (Basel)Chandra S, Baribault C, Lacey M, Ehrlich MEpigenetics
2009Comprehensive mapping of long range interactions reveals folding principles of the human genomeScienceLieberman-Aiden E., van Berkum N., Williams L., Imakaev M., Ragoczy T., Telling A., Amit I., Lajoie B., Sabo P., Dorschner M., Sandstrom R., Bernstein B., BenderM. A., Groudine M., Gnirke A., Stamatoyannopoulos J., Mirny L., Lander E., Dekker J. Epigenetics
2014A robust TALENs system for highly efficient mammalian genome editingSci RepFeng Y, Zhang S, Huang XDNA Assembly and Cloning, Golden Gate Assembly
2015Probing the Run-On Oligomer of Activated SgrAI Bound to DNAPLoS OneShah, S., Sanchez, J., Stewart, A., et al.Cloning & Synthetic Biology, DNA Preparation, Restriction Enzyme Digestion
2015A metagenomics and case-control study to identify viruses associated with bovine respiratory disease.J VirolTerry Fei Fan Ng, Nikola O Kondov, Xutao Deng, Alison Van Eenennaam, Holly L Neibergs, Eric DelwartcDNA Synthesis
2013Genome-wide hydroxymethylation tested using the HELP-GT assay shows redistribution in cancerNucleic Acids ResearchBhattacharyya, S., Yu, Y., Suzuki, M., Campbell, N., Mazdo, J., Vasanthakumar, A., et al.5-hmC Detection & Analysis, Methods of 5-hmC Detection and Analysis
"Bacterial Systems" introduction of Membrane Proteins - Strategies for Expression and IsolationSamuelson, J.C.
An insight into the various regulatory mechanisms modulating human DNA methyltransferase 1 stability and functionEpigeneticsKar, S., Deb, M., Sengupta, D. Shilpi, A., Parbin, S., Torrisani, J., Pradhan, S. and Patra, S.
2015Converting a Sulfenic Acid Reductase into a Disulfide Bond IsomeraseAntioxid Redox SignalChatelle C, Kraemer S, Ren G, Chmura H, Marechal N, Boyd D, Roggemans C, Ke N, Riggs P, Bardwell J, Berkmen M
Database of DNA polymerasesCurr Protoc Mol Biol. Langhorst, B.W. and Nichols, N.M.
Culture-independent genomic characterisation of Candidatus Chlamydia
2015CRISPR/Cas9 nuclease cleavage combined with Gibson assembly for seamless cloningBiotechniquesWang JW, Wang A, Li K, Wang B, Jin S, Reiser M, Lockey RF
2017NicE-seq: High resolution open chromatin profilingGenome BiologyPonnaluri, V.K.C., Zhang, G., Estève, P.-O., Spracklin, G., Sian, S., Xu, S.-Y., Benoukraf, T., Pradhan, S.
2017N-glycosylation affects the stability and barrier function of the MUC16 mucinJ. Biol Chem.Taniguchi, T., Woodward, A.M., Magnelli, P., McColgan, N.M., Lehoux, S., Jacobo, S.M.P., Mauris, J., Argueso, P.
2017Removing the needle from the haystack: Enrichment of Wolbachia endosymbiont transcripts from host rematode RNA by Cappable-seqTMPLoS OneLuck, A.N., Slatko, B.E., Foster, J.M.
2017Rapid Time Scale Analysis of T4 DNA Ligase–DNA Binding.BiochemistryBauer, R.J., Jurkiw, T.J., Evans, T.C. Jr. and Lohman, G.J.
2017Methods for structural and functional analyses of intramembrane prenyltransferases in the UbiA superfamilyMethods EnzymolYang, Y., Ke, N., Liu, S., Li, W.
2017Highly specific imaging of mRNA in single cells by target RNA-initiated rolling circle amplificationChem SciDeng, Ruijie., Zhang, Kaixiang., Sun, Yupeng., Ren, Xiaojun., Li, Jinghong.
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