Publications

Publications

In addition to using the filters to search, this list may be sorted by clicking on any column header. Titles in orange are linked to the full article text.

Use any combination of the filters and/or perform a keyword(s) search to narrow your results below.

Search Filters
  1. Filter by:
  2. and/or
  3. Clear all filters

Your search returned 1787 results.

Search Results
YearTitleJournalAuthorsApplication(s)
"Bacterial Systems" introduction of Membrane Proteins - Strategies for Expression and IsolationSamuelson, J.C.
An insight into the various regulatory mechanisms modulating human DNA methyltransferase 1 stability and functionEpigeneticsKar, S., Deb, M., Sengupta, D. Shilpi, A., Parbin, S., Torrisani, J., Pradhan, S. and Patra, S.
2015Converting a Sulfenic Acid Reductase into a Disulfide Bond IsomeraseAntioxid Redox SignalChatelle C, Kraemer S, Ren G, Chmura H, Marechal N, Boyd D, Roggemans C, Ke N, Riggs P, Bardwell J, Berkmen M
Database of DNA polymerasesCurr Protoc Mol Biol. Langhorst, B.W. and Nichols, N.M.
Culture-independent genomic characterisation of Candidatus Chlamydia
2015CRISPR/Cas9 nuclease cleavage combined with Gibson assembly for seamless cloningBiotechniquesWang JW, Wang A, Li K, Wang B, Jin S, Reiser M, Lockey RF
2017NicE-seq: High resolution open chromatin profilingGenome BiologyPonnaluri, V.K.C., Zhang, G., Estève, P.-O., Spracklin, G., Sian, S., Xu, S.-Y., Benoukraf, T., Pradhan, S.
2017N-glycosylation affects the stability and barrier function of the MUC16 mucinJ. Biol Chem.Taniguchi, T., Woodward, A.M., Magnelli, P., McColgan, N.M., Lehoux, S., Jacobo, S.M.P., Mauris, J., Argueso, P.
2017Removing the needle from the haystack: Enrichment of Wolbachia endosymbiont transcripts from host rematode RNA by Cappable-seqTMPLoS OneLuck, A.N., Slatko, B.E., Foster, J.M.
2017Rapid Time Scale Analysis of T4 DNA Ligase–DNA Binding.BiochemistryBauer, R.J., Jurkiw, T.J., Evans, T.C. Jr. and Lohman, G.J.
2017Methods for structural and functional analyses of intramembrane prenyltransferases in the UbiA superfamilyMethods EnzymolYang, Y., Ke, N., Liu, S., Li, W.
2017Highly specific imaging of mRNA in single cells by target RNA-initiated rolling circle amplificationChem SciDeng, Ruijie., Zhang, Kaixiang., Sun, Yupeng., Ren, Xiaojun., Li, Jinghong.
2017Mechanism and timing of Mcm2-7 ring closure during DNA replication origin licensingNat. Struct. Mol. Biol.Ticau, S., Friedman, L.J., Champasa, K., Correa, I.R., Jr., Gelles, J., Bell, S.P.
2017Macrocycle peptides delineate locked-open inhibition mechanism for micoorganism phosphoglycerate mutasesNat. Commun.Yu, H., Dranchak, P., Li, Zhiru, MacArthur, R., Munson, M.S., Mehzabeen, N., Baird, N.J., Battalie, K.P., Ross, D., Lovell, Sc., Carlow, C.K.S., Suga, H., Inglese, J.
2017Using high-throughput barcode sequencing to efficiently map connectomesNucleic Acids ResearchPeikon, I.D., Kebschull, J.M., Vagin, V.V., Ravens, D.I, Sun, Y.-C., Brouzes, E., Correa, I.R., Bressan, D., Zador, A.M.
2017The GAN exonuclease, or the flap endonuclease Fen1 and RNase HII are necessary for viability of Thermococcus kodakarensisJ. BacteriolBurkhart, B.W., Cubonova, L., Heider, M.R., Kelman, Z., Reeve, J.N., Santangelo, T.J.
2017Whole genome amplification provides suitable control DNA for use in DNA barcoding applicationsBiop.Bourque, D.A., Naaum, A.M., Distel, D.L., Hanner, R.H.
2017Various Mutations compensate for a deleterious lacZα insert in the replication enhancer of M13 bacteriophagePLoS OneZygiel, E.M., Noren, K.A., Adamkiewicz, M.A., Aprile, R.J., Bowditch, H.K., Carroll, C.L., Cerezo, M.A.S., Dagher, A.M., Hebert, C.R., Hebert, L.E., Mahame, G.M., Milne, S.C., Silvestri, K.M., Sutherland, S.E., Sylvia, A.M., Taveira, C.N., VanValkenburgh, D.J., Noren, C.J., Hall, M.F.
2017Targeted enrichment and sequencing of recent endosymbiont-host lateral gene transfersSci Rep.Dunning Hotopp, J.C., Slatko, B.E., Foster, J.M.
2017Rpn (YhgA-Like) Proteins of Escherichia coli K-12 and their Contribution to Rec-A-Independent Horizontal TransferJ. BacteriolKingston, A.W., Ponkratz, C. and Raleigh, E.A.
2017Restriction endonuclease AgeI is a monomer which dimerizes to cleave DNANucleic Acids Res.Tamulaitiene, G., Jovaisaite, V., Tamulaitis, G., Songailiene, I., Manakova, E., Zaremba, M., Grazulis, S., Xu, S.Y., Siksnys, V.
2017Serotyping dengue virus with isothermal amplification and a portable sequencerScientific ReportsYamagishi, J., et al.
2017Sequential formation of two branched intermediates during protein splicing of class three inteinsExtrmophilesTori, K. and Perler, F.
2017Complete genome and methylome analysis of psychrotrophic bacterial isolates from Lake Untersee in AntarcticaGenome Announce.Fomenkov, A., Akimov, V.N., Vasilyeva, L.V., Andersen, D.T., Vincze, T., Roberts, R.J.
2017Complete genome sequence and methylome analysis of Acinetobacter calcoaceticus 65Fomenkov, A., Vincze, T., Degtyarev, S.K., Roberts, R.J.
2017Complete genome and methylome sequences of Salmonella enterica subsp. enterica Serovars Typhimurium, Saintpaul, and Stanleyville from the SARA/SARB collectionGenome AnnounceYao, K., Roberts, R.J., Allard, M.W., Hoffmann, M.
2017Defining the RNaseH2 enzyme-initiated ribonucleotide excision repair pathway in ArchaeaJ. Biol Chem.Heider, M.R., Burkhart, B.W., Santangelo, T.J., Gardner, A.F.
2017Complete genome sequence of Kluyveromyces lactis strain GG799, a common yeast host for heterologous protein expressionGenome AnnouncementsChuzel, L., Ganatra, M.B., Schermerhorn, K.M., Gardner, A.F., Anton, B.P., Taron, C.H.
2017​Colorimetric tests for diagnosis of filarial infection and vector surveillance using non-instrumented nucleic acid loop-mediated isothermal amplification (NINA-LAMP).PLoS OnePoole, C.B., Li, Z., Alhassan, A., Guelig, D., Diesburg, S., Tanner, N.A., Zhang, Y., Evans, T.C. Jr., LaBarre, P., Wanji, S., Burton R.A. and Carlow, C.K.
2017A practical guide to the oral microbiome and its relation to health and diseaseKrishnan, K., Chen, T., Paster, B.J.
2017Caenorhabditis elegans CES-1 snail represses Pig-1 MELK expression to control asymmetric cell divisionGeneticsWei, H., Yan, B., Gagneur, J., Conradt, B.
2017Association of 5-hydroxymethylation and 5-methylation of DNA cytosine with tissue-specific gene expressionEpigeneticsPonnaluri, V.K., Ehrlich, K.C., Zhang, G., Lacey, M., Johnston, D., Pradhan, S., Ehrlich, M.
2017Examining Sources of Error in PCR by Single-Molecule Sequencing.PLoS ONEPotapov Vladamir, Ong Jennifer L
2017Evaluating computatonal gene ontology annotationsMethods Mol. Biol.Skunca, N., Roberts, R.J., Steffen, M.
2017Functional characterisation of cis-regulatory elements governing dynamic Eomes expressionDevelopmentSimon, C.S. et al.
2017EcoBLMcrX, a classical modification-dependent restriction enzyme in Escherichia coli B: Characterization in vivo and in vitro with a new approach to cleavage site determinationPLoS OneFomenkov, A., Sun, Z., Dila, D.K., Anton, B.P., Roberts, R.J., Raleigh, E.A.
2017DNA recognition by the SwaI restriction endonuclease involves unusual distortion of an 8 base pair A:T-rich targetNucl. Acids Res.Shen, B.W., Heiter, D.F., Lunnen, K.D., Wilson, G.G., Stoddard, B.L.
2017DNA damage is a pervasive cause of sequencing errors, directly confounding variant identificationScienceChen, L., Liu, P., Evans, T.C., Jr., Ettwiller, L.M.
2017Dynamics of 5-carboxylcytosine during hepatic differentiation: potential general role for active demethylation by DNA repair in lineage specificationLewis, L.C., Lo, P.C., Foster, J.M., Dai, N., Correa, I.R., Jr., Durczak, P.M., Duncan, G., Ramsawhook, A., Aithal, G.P., Denning, C., Hannan, N.R., Ruzov, A.
2017DNA target recognition domains in the Type I restriction and modification systems of Staphylococcus aureusNucl. Acids Res.Cooper, L.P., Roberts, G.A., White, J.H., Luyten, Y.A., Bower, E.K., Morgan, R.D., Roberts, R.J., Lindsay, J.A., Dryden, D.T.
2012Rapid incorporation kinetics and improved fidelity of a novel class of 3'-OH unblocked reversible terminatorsNucleic Acids Res.Gardner, A.F., Wang, J., Wu, W., Karouby, J., Li, H., Stupi, B.P., Jack, W.E., Hersh, M.N. and Metzker, M.L.
2012Reconstitution of translation from Thermus thermophilus reveals a minimal set of components sufficient for protein synthesis at high temperatures and functional conservation of modern and ancient translation components Nucleic Acids Res.Zhou, Y., Asahara, H. and Chong, S.
2012Polbase: a repository of biochemical, genetic and structural information about DNA polymerases.Nucl.Acids Res.Langhorst, B.W., Jack, W.E., Reha-Krantz, L.and Nichols, N.M.
2012Production of disulfide-bonded proteins in Escherichia coliProtein Expression and PurificationBerkmen, M.
2012Review: Small RNA expression profiling by high-throughput sequencing: Implications of enzymatic manipulationJournal of Nucleic AcidsZhuang, F., Fuchs, R.T. and Robb, G.B.
2012RNAi triggered by specialized machinery silences developmental genes and retrotransposonsNatureYamanaka, S., Mehta, S., Reyes-Turcu, F.E., Zhuang, F., Fuchs, R.T., Rong, Y., Robb, G.B. and Grewal, S.I.
2012Restriction Enzymes in Microbiology, Biotechnology and BiochemistryEncuentroGeoffrey G. Wilson, Hua Wang, Daniel F. Heiter, Keith D. Lunnen
2012Restriction enzymes in Microbiology Biotechnology and BiochemistryProceedings of the 2012 Nicaraguan Biotechnology ConferenceWilson, G.G., Wang, H., Heiter, D.F., and Lunnen, K.D.
2012Metagenome Projects (To be published as part of a proceedings volume based upon a presentation as presented at the VI Congreso Nicaraguense de Biotecnologia.)Slatko, B.
2012Near-infrared fluorescence imaging of mammalian cells and xenograft tumors with SNAP-tagPLoS ONEGong, H. wt al.
2012In vivo incorporation of an azide labeled sugar analog to detect mammalianCarbohydrate Res. Vainauskas, S., Cortes, L.K. and Taron, C.H.
2012Marine genome resource sustainability in Central AmericaElectronic Journal of BiotechnologyHuete-Perez, J.A., Roberts, R.J. and Quezada, F.
2012Oxidative folding of proteins in Escherichia coliBioProcess InternationalBerkmen, M.
2012Polbase: a repository of biochemical, genetic and structural information about DNA polymerasesNucleic Acids Res.Langhorst, B.W., Jack. W.E., Reha-Krantz, L. and Nichols, N.M.
2012Nematode-Bacterium Symbioses - Cooperation and Conflict Revealed in the 'Omics' AgeBiol. BulletinMurfin, K., Dillman, A., Foster, J., Bulgheresi, S., Slatko, B., Sternberg, P. and Goodrich-Blair, H.
2012Oxidative folding of proteins in Escherichia coliBioPharm InternationalBerkmen, M.
2012Substrate cooperativity in marine luciferases PLoS OneTzertzinis, G., Schildkraut, E. and Schildkraut, I.
2012Targeted genome enrichment for efficient purification of endosymbiont DNA from host DNASymbiosisGeniez, S., Foster, J.M., Kumar, S., Moumen, B., Leproust, E., Hardy, O., Guadalupe, M., Thomas, S.J., Boone, B., Hendrickson, C., Bouchon, D., Greve, P and Slatko, B.E.
2012Stucture and cleavage activity of the tetrameric MspJI DNA modification-dependent restriction endonuclease.Nucleic Acids ResearchHorton, J.R., Mabuchi, M., Cohen-Karni, D., Zhang, X., Griggs, R., Samaranayake, M., Roberts, R.J., Zheng, Y. and Cheng, X.
2012Substrate cooperativity in marine luciferasesPLoS OneTzertzinis, G., Schildkraut, E., and Schildkraut, I.
2012Thousands of missed genes found in bacterial genomes and their analysis with COMBRBiol Direct.EX. Biol Direct.Wood, D.E., Lin, H., Levy-Moonshine, A., Swaminathan, R., Chang, Y.C., Anton, B.P., Osmani, L., Steffen, M., Kasif, S. and Salzberg, S.L.
2012Uptake of radiolabeled GIcNAc into Saccharomyces cerevisiae via native hexose transporters and its in vivo incorporation into GPI precursors in cells expressing heterologous GIcNAc kinaseFEMS Yeast ResScarcelli, J.J., Colussi, P.A., Fabre, A.L., Boles, E., Orlean, P., Taron, C.H.
2012The methylomes of six bacteriaNucleic Acids Res.Murray, I.A., Clark, T.A., Morgan, R.D., Boitano, M., Anton, B.P., Luong, K., Fomenkov, A., Turner, S.W., Korlach, J. and Roberts, R.J.
2012The Thermococcus kodakaraensis Tko CDC21-1 intein activates its N-terminal splice junction in the absence of a conserved histidine by a compensatory mechanismBiochemistryTori, K., Cheriyan, M., Pedamallus, C.S., Contreras, M.A. and Perler, F.B.
2012SHuffle, a novel Escherichia coli protein expression strain capable of correctly folding disulfide bonded proteins in its cytoplasmLobstein, J., Emrich, C.A., Jeans, C., Faulkner, M., Riggs, P. and Berkmen, M.
2012Simultaneous multiple target detection in real-time loop-mediated isothermal amplificationBiotechniquesTanner, N.A., Zhang, Y. and Evans, T.C. Jr.
2012SHuffle, a novel Escherichia coli protein expression strain capable of correctly folding disulfide bonded proteins in its cytoplasmMicrobial Cell FactoriesLobstein, J., Emrich, C.A., Jeans, C., et al.
2012Structural insights into the assembly and shape of Type III restriction-modification (R-M) EcoP15I complex by small-angle X-ray scattering J Mol biol. Gupta, Y.K., Yang, L., Chan, S.H., Samuelson, J.C., Xu, S.-Y. and Aggarwal, A.K.
2012Structure-function analysis of Methanobacterium thermoautotrophicum RNA ligase - engineering a thermostable ATP independent enzymeBMC Mol Biol.Zhelkovsky, A.M. and McReynolds, L.A.
2012Simultaneous multiple target detection in real-time loop-mediated isothermal amplificationBiotechniquesTanner NA, Zhang Y, Evans TC Jr.
2012Structural bias in T4 RNA ligase-mediated 3'-adapter ligationNucleic Acids Res.Zhuang, F., Fuchs, R.T., Sun, Z., Zheng, Y. and Robb, G.B.
2012Clathrin promotes centrosome integrity in early mitosis through stabilization of centrosomal ch-TOG J Cell Bio.Foraker, A.B., Camus, S.M., Evans, T.M., Majeed, S.R., Chen, C.-Y., Taner, S.B., Correa, I.R. Jr., Doxsey, S.J. and Brodsky, F.M.
2012Characterization of Transcription Factors That Regulate the Type IV Secretion System and Riboflavin Biosynthesis in Wolbachia and Brugia malayiPLoS OneZhiru, Li and Carlow, C.K.S.
2012Characterization of Type II and III restriction-modification systems from Bacillus cereus strains ATCC10987 and ATCC14579.J.Bacteriol.Xu, S.Y., Nugent, R.L., Kasamkattil, J., Fomenkov, A., Gupta, Y., Aggarwal, A., Wang, X., Li, Z., Zheng, Y.and Morgan, R.
2012Diagnosis of brugian filariasis by loop-mediated isothermal amplification.PLoS Negl Trop Dis.Poole CB, Zhang Y, Evans TC Jr., Carlow CK
2012Diagnosis of Brugian Filariasis by Loop-Mediated Isothermal AmplificationPLOS Negl Trop DisPoole, C., Tanner, N. Zhang, Y., Evans, T. and Carlow, C.
2012Detection of miRNAs with a nanopore single-molecule counterExpert Rev. Mol. Diagn.Gu, L.Q., et al.
2012Detection of miRNAs with a nanopore single-molecule counterExpert Rev Mol Diagn.Gu, L.Q., Wanunu, M., Wang, M.X., McReynolds, L. and Wang, Y.
2012Antiproliferative small-molecule inhibitors of transcription factor LSF reveal oncogene addiction to LSF in hepatocellular carcinomaProc. Natl. Acad. Sci. USAGrant, T.J., et al.
2012Antiproliferative small-molecule inhibitors of transcription factor LSF reveal oncogene addiction to LSF in hepatocellular carcinomaProc Natl Acad Sci. USAGrant, T.J., Bishop, J.A., Christadore, L.M., Barot, G., Chin, H.G., Woodson, S., Kavouris, J., Siddiq, A., Gredler, R., Shen, X.N., Sherman, J., Meehan, T., Fitzgerald, K., Pradhan, S., Briggs, L.A., Andrews, W.H., Sarkar, D., Schaus, S.E. and Hansen, U.
2012A terracotta bio-batteryBioresour TechnolAjayi, F.F., Weigele, P.R.
2012A versatile element for gene addition in bacterial chromosomesNucl.Acids Res.Sibley, M.H.and Raleigh, E.A.
2012Characterization of MspNI (G/GWCC) and MspNII (R/GATCY), novel thermostable Type II restriction endonucleases from Meiothermus sp., isoschizomers of AvaII and BstYIMol Biol Rep.Gupta, R., Xu, S.Y., Sharma, P. and Capalash, N.
2012Characterization of transcription factors that regulate the Type IV secretion system and riboflavin biosynthesis in Wolbachia of Brugia malayiPLOS OneLi, Liz and Carlow, C.
2012Biochemical characterization of recombinant beta-glucosyltransferase and analysis of global 5-hycroxymethylcytosine in unique genomesBiochemistryTerragni, J., Bitinaite, J., Zheng, Y. and Pradhan, S.
2012Characterization of DNA methyltransferase specificities using single-molecule, real-time DNA sequencingNucl. Acids Res.Clark, T.A., Murray, I.A., Morgan, R.D., Kislyuk, A.O., Spittle, K.E., Boitano, M., Fomenkov, A., Roberts, R.J. and Korlach, J.
2012Genome Sequence of the Model Hyperthermophilic Archaeon Thermococcus litoralis NS-CJ Bacteriol.Gardner, A.F., Kumar, S. and Perler, F.B.
2012Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing. Nat Biotechnol.Fang, G., Munera, D., Friedman, D.I., Mandlik, A., Chao, M.C., Banerjee, O., Feng, Z., Losic, B., Mahajan, M.C., Jabado, O.J., Deikus, G., Clark, T.A., Luong, K., Murray, I.A., Davis, B.M., Keren-Paz, A., Chess, A., Roberts, R.J., Korlach, J., Turner, S.W., Kumar, V., Waldor, M.K. and Schadt, E.E.
2012Functional importance of Dicer protein in the adaptive cellular response to hypoxiaJ biol Chem.Ho, J.J., Metcalf, J.L., Yan, M.S., Turgeon, P.J., Wang, J.J., chalsev, M., Petruzziello-Pellegrini, T.N., Tsui, A.K., He, J.Z., Dhamko, H., Man, H.S., Robb, G.B., Teh, B.,T., Ohh, M. and Marsden, P.A.
2012Functional importance of Dicer protein in the adaptive cellular response to hypoxiaJ. Biol. Chem.Ho, J.J., et al.
2012Identification of genes containing ecdysone response elements in the genome of Brugia malayiMol Biochem ParasitolLiu, C., Enright, T., Tzertzinis, G. and Unnasch, T.R.
2012In vitro Transcription and Capping of Gaussia Luciferase mRNA Followed by HeLa Cell TransfectionJ. Vis. Exp. Jani, B. and Fuchs, R.
2012Identification and characterization of protein glycosylation using specific endo- and exoglycosidasesMethods Mol Biol. Magnelli P, Bielik A, Guthrie E. 
2012Identification and characterization of protein glycosylation using specific endo-and exoglycosidasesMethods Mol BiolMagnelli, P., Bielik, A., Guthrie, E.
2012Dual binding of Chromomethylase Domains to H3K9me2-Containing Nucleosomes Directs DNA Methylation in Plants.CellXuehua Zhong, X., Du, J., Bernatavichute, Y.V., Stroud, H., Feng, S., Caro, E., Vashisht, A.A., Chin, H.G., Terragni, J., Tu, A., Hetzel, J., Wohlschlegel, J.A., Pradhan, S., Patel, D.J. and Jacobsen, S.E.
2012Efficient and sequence-independent replication of DNA containing a third base pair establishes a functional six-letter genetic alphabet.Proc. Natl. Acad. Sci. USAMalyshev, D.A., Dhami, K., Quach, H.T., Lavergne, T., Ordoukhanian, P., Torkamani, A. and Romesberg, F.E.
2012Disulfide-bonded protein expression in E. coliGenetic Engineering & Biotechnology NewsSamuelson, J.C., Causey, T.B., and Berkmen, M.
2012Drugs and targets to perturb the symbiosis of Wolbachia and filarial nematodesParasitic Helminths: Targets, Screens, Drugs and VaccinesTaylor, M.J., Ford, L, Ford, Hoerauf, A., Pfarr, K., Foster, J.M., Kumar, S. and Slatko, B.E.
2012Filarial and Wolbachia genomics.Parasite Immunol.Scott, A.L., Ghedin, E., Nutman, T.B., McReynolds, L.A., Poole, C.B., Slatko, B.E.and Foster, J.M.(
2012Filarial and Wolbachia GenomicsParasite Immunol.Scott, A.L., Ghedin, E., Nutman, T.B., McReynolds, L.A., Poole, C.B., Slatko, B.E. and Foster, J.M.
2012Engineered derivatives of maltose-binding proteinProtein EngineeringRiggs, P.D.
2012Engineering Escherichia coli for soluble expression and single step purification of active human lysozymeJournal of BiotechnologyLamppa, J.W., Tanyos, S.A., and Griswold, K.E.
2011Kinetic characterization of single strand break ligation in duplex DNA by T4 DNA Ligase.J Biol Chem.Lohman, G.J.S., Chen, L.and Evans, T.C., Jr.
2011Kinetic study of de novo chromophore maturation of fluorescent proteinsAnal. Biochem. Iizuka, R., Yamagishi-Shirasaki, M. and Funatsu, T.
2011Mutational and biochemical analysis of the DNA-entry nuclease EndA from Streptococcus pneumoniae Nucleic Acids Res. Midon, M., Schäfer, P., Pingoud, A., Ghosh, M., Moon, A.F., Cuneo, M.J., London, R.E. and Meiss, G.
2011Identification of targeting peptides for ischemic myocardium by in vivo phage displayJ. Mol. Cell. Cardiol. Kanki, S. et al.
2011Intravesicle Isothermal DNA Replication.BMC Res NotesTorino, D., Del Bianco, C., Ross, L., Ong, J.and Mansy, S.
2011Introduction and historical overview of DNA sequencingCurr. Prot. Mol. Biol.Nelson, F.K, et. al.
2011Natural and engineered nicking endonucleases--from cleavage mechanism to engineering of strand-specificity.Nucl.Acids.Res.Chan, S.H., Stoddard, B.L.and Xu, S.Y.
2011Ordered and dynamic assembly of single spliceoseomsScience Hoskins, A. et al.
2011Overexpression and purification of U24 from human herpesvirus type-6 in E. coli: unconvential use of oxidizing environments with a maltose binding protein-hexahistidine dual tag to enhance membrane protein yieldMicrobial Cell FactoriesTait, A.R. and Straus, S.K.
2011Overview of DNA Sequencing StrategiesCurr.Protoc.Mol.Biol.Shendure, J.A., Porreca, G.J., Church, G.M., Gardner, A.F.Hendrickson, C.L., Kieleczawa, J.and Slatko, B.E.
2011New Clues in the Allosteric Activation of DNA Cleavage by SgrAI; Structures of SgrAI Bound to Cleaved Primary Site DNA and Uncleaved Secondary Site DNA.Acta Crystallogr.F.Structural biology and crystallization communications Little, E.J., Dunten, P.W., Bitinaite, J.and Horton, N.C.
2011Next-gen expression systemsRitter, A.
2011Optimization of Medium Composition for Production of Recombinant Calf Chymosin from Kluyveromyces lactis in Submerged FermentationJ. of Northeast Agricultural UniversityFeng, Z., et al.
2011Fluorescent site-specific labeling of Escherichia coli expressed proteins with Sfp phosphopantetheinyl transferaseMethods Mol.Biol.Zhang, A., Sun, L., Buswell, J., Considine, N., Ghosh, I., Masharina, A., Noren, C.and Xu, M.Q.
2011Genome-wide mapping of the sixth baseGenome Biol. Diep, D. and Zhang, K.
2011Heterologous expression of a thermophilic esterase in Kluyveromyces yeastsAppl. Microbiol. Biotechnol.Rocha S.N., et al.
2011Expression of recombinant cytochromes c in E.coli.Methods Mol.Biol.Londer, Y.Y.
2011"First Generation" automated DNA sequencing technologyCurr. Prot. Mol. Biol.Slatko, B.E., et al.
2011Fluorescent peptides highlight peripheral nerves during surgery in miceNat. Biotechnol. Whitney, M.A. et al.
2011High sensitivity 4-hydroxymethylcytosine detection in Balb/C brain tissue.J Vis Exp.Davis, T.and Vaisvila, R.
2011Identification and characterization of protein glycosylation using specific endo- and exoglycosidases.Methods Mol.Biol.Magnelli, P., Bielik, A.and Guthrie, E.
2011Identification and characterization of the cofactor-independent phosphoglycerate mutases of Dirofilaria immitis and its Wolbachia endosymbiont.Veterinary ParasitologyLi.Z., Galvin, B., Raverdy, S.and Carlow, C.K.S.
2011Identification of a chitin-induced small RNA that regulates translation of the tfoX gene, encoding a positive regulator of natural competence in Vibrio cholerae J Bacteriol. Yamamoto, S., Izumiya, H., Mitobe, J., Morita, M., Arakawa, E., Ohnishi, M. and Watanabe, H.
2011High-throughput analysis of the mutagenic and cytotoxic properties of DNA lesions by next-generation sequencing Nuc. Acids Res. Yuan, B., Wang, J., Cao, H. et al
2011Identification and Characterization of Protein Glycosylation using Specific Endo- and ExoglycosidasesJ Vis Exp. Magnelli PE, Bielik AM, Guthrie EP.
2011The MspJI family of modification-dependent restriction endonucleases for epigenetic studiesProc. Natl. Acad. Sci. Cohen-Karni, D, et al.
2011The MspJI family of modification-dependent restriction endonucleases for epigenetic studies.Proc.Natl.Acad.Sci.Cohen-Karni, D., Xu, D., Apone, L., Formenkov, A., Sun, Z., Davis, P.J., Morey Kinney, S.R., Yamada-Mabuchi, M., Xu, S.-y., Davis, T., Pradhan, S.Roberts, R.J., Zheng, Y.
2011 Tissue specific distribution and dynamic changes of 5-hydroxymethylcytosine in mammalian genomeJ. Biol. Chem. Kinney, S.M. et al.
2011The characterization of human adenylate kinases 7 and 8 demonstrates differences in kinetic parameters and structural organization among the family of adenylate kinase isoenzymes Biochem J.  Panayiotou, C., Solaroli, N., Xu, Y., Johansson, M. and Karlsson, A.
2011Recent developments in difficult protein expression: A guide to E. colistrains, promoters, and relevant host mutations. Methods in Molecular Biology Samuelson, J.C.
2011"The Molecular Biology, Immunology and chemotherapy of Wolbachia bacterial endosymbionts of filarial nematodes".Parasitic Nematodes: Molecular Biology, Biochemistry & Immunology (Kennedy, M.and Harnett, W., eds.)Foster, J.M., Hoerauf, A., Slatko, B.E.and Taylor, M.J.
2011TrbB from conjugative plasmid F is a structurally distinct disulfide isomerase that requires DsbD for redox state maintenance.J BacteriolHemmis, C.W., Berkmen, M., Eser, M.and Schildbach, J.F.
2011Uptake of radiolabeled GlcNAc into Saccharomyces cerevisiae via native hexose transporters and its in vivo incorporation into GPI precursors in cells expressing heterologous GlcNAc kinase.REMS Yeast ResScarcelli, J.J., Colussi, P.A., Fabre, A.L., Boles, E., Orlean, P.and Taron, C.H.
2011Using a structural and logics systems approach to infer bHLH-DNA binding specificity determinantsNucleic Acids Res. De Masi, F., Grove, C.A., Vedenko, A., Alibés, A., Gisselbrecht, S.S., Serrano, L., Bulyk, M.L. and Walhout, A.J.
2011YaeJ is a novel ribosome-associated protein inEscherichia coli that can hydrolyze peptidyl-tRNA on stalled ribosomes Nucleic Acids Res.  Handa, Y., Inaho, N. and Nameki, N.
2011Tuned Escherichia coli as a host for the expression of disulfide-rich proteinsBiotechnology JournalSalinas, G., Pellizza, L., Margenat, M., et al.
2011Tuning different expression parameters to achieve soluble recombinant proteins in E. coli: Advantages of high-throughput screeningBiotechnology JournalCorrea, A. and Oppezzo, P.
2011Two Color STED microscopy in living cells.Biomedical Optics Express Pellett, P.A., Sun, X., Gould, T.J., Rothman, J.E., Xu, M-Q, Corrêa, I.R.Jr.and Bewersdorf, J.
2011Recombination in Wolbachia endosymbionts of filarial nematodies?Appl.Environ.Microbiol.Foster, J., Slatko, B., Bandi, C.and Kumar, S.
2011Regulation of expression and activity of DNA (cytosine-5) methyltransferases in mammalian cellsProg Mol Biol Transl Sci.Kinney, S.R. and Pradhan, S.
2011Screening of specific binding peptide targeting blood vessel of human esophageal cancer in vivo in miceChin. Med. J. Zhi, M. et al.
2011Permanent Genetic Resources added to Molecular Ecology Resources Database 1 April 2011-31 May 2011.Mol Ecol Resour.Molecular Ecology Resources Primer Development Consortium, Bonizzoni, M., Bourjea, J., Chen, B., Crain, B.J., Cui, L., Fiorentino, V., Hartmann, S., Hendricks, S., Ketmaier, V., Ma, X., Muths, D., Pavesi, L., Pfautsch, S., Rieger, M.A., Santonastaso, T., Sattabongkot, J., Taron, C.H., Taron, D.J., Tiedemann, R., Yan, G., Zheng, B.and Zhong, D.
2011Potent Anti-Tumor Effect Generated by a Novel Human Papilllomavirus (HPV) Antagonist Peptide Reactivating the pRb/E2F PathwayPLoS OneGuo, C.P. et al.
2011"Recent Developments in Difficult Protein Expression: A Guide to E.coli strains, Promoters and Relevant Host Mutations" editors Tom C.Evans Jr.and Ming-Qun Xu, Humana PressMethods Mol.Biol.Samuelson, J.C.
2011 Selection of peptides targeting helix 31 of bacterial 16S ribosomal RNA by screening M13 phage-display libraries Molecules Lamichhane, T.N., Abeydeera, N.D., Duc, A.C., Cunningham, P.R. and Chow, C.S
2011Targeting the Wolbachia Cell Division Protein FtsZ as a New Approach for Antifilarial Therapy.PLoS Neglected Tropical DiseasesLi, Z., Garner, A.L., Gloeckner, C., Janda, K.D.and Carlow, C.K.
2011The Arthrobacter Species FB24 Arth_1007 (DnaB) Intein Is a Pseudogene.PLoS ONETori, K.and Perler, F.B.
2011Simple and efficient synthesis of 5′ pre-adenylated DNA using thermostable RNA ligase.Nucl.Acids Res.Zhelkovsky, A.M.and McReynolds, L.A.
2011Site-specific protein labeling by intein-mediated protein ligation.Methods Mol.Biol.Ghosh, I., Considine, N., Maunus, E., Sun, L., Zhang, A., Buswell, J., Evans, T.C.Jr.and Xu, M.Q.
2011T4 RNA ligase 2 truncated active site mutants: improved tools for RNA analysis.BMC Biotechnol.Viollet, S., Fuchs, R.T., Munafo, D.B., Zhuang, F.and Robb, G.B.
2011Activity, specificity and structure of I-Bth03051: a representative of a new homing endonuclease familyTaylor, G.K., Heiter, D.F., Pietrokovski, S. and Stoddard, B.L.
2011Asymmetric DNA recognition by the OkrAI endonuclease, an isoschizomer of BamHI.Nucl.Acids.Res.Vanamee, E.S., Viadiu, H., Chan, S.H., Ummat, A., Hartline, A.M., Xu, S.Y.and Aggarwal, A.K.
2011Biochemical Characterization of a Structure-Specific Resolving Enzyme from Sulfolobus Islandicus Rod-Shaped Virus 2.PLoS ONEGardner, A.F., Guan, C.and Jack, W.E.
2011A set of aspartyl protease-deficient strains for improved expression of heterologous proteins in Kluyveromyces lactis.FEMS Yeast Res.Ganatra, M.B., Vainauskus, S., Hong, J.M., Taylor, T.E., Denson, J.P., Esposito, D., Read, J.D., Schmeisser, H., Zoon, K.C., Hartley, J.L.and Taron, C.H.
2011A SNAP-tagged detivative of HIV-1 - A versatile tool to study virus-cell interactionsPLoS One Eckhardt, M. et al.
2011A type IV modification-dependent restriction enzyme SauUSI from Staphylococcus aureus subsp.aureus USA300.Nucl.Acids.Res.Xu, S.Y., Corvaglia, A.R., Chan, S.H., Zheng, Y.and Linder, P.
2011Branched Intermediate Formation is the Slowest Step in th Protein Splicing Reaction of the Ala1 KbA Intein from Methanococcus jannaschiiSaleh, L., Southworth, M.W., Considine, N., O'Neill, C., Benner, J., Bollinger, J.M. and Perler, F.B.
2011Characterization of Sulfolobus islandicus rod-shaped virus 2 gp19, a single-strand specific endonuclease.ExtremophilesGardner, A.F., Prangishvili, D.and Jack.W.E.
2011Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq Genome Res. Saiful, I., Kjällquist, U., Moliner, A. et al
2011Characterization of Type II and III restriction modification systems from Bacillus cereus strains J. Bacteriol.Xu, S.Y., Nugent, R.L., Kasamkattil, J., Fomenkov, A., Gupta, Y., Aggarwal, A., Wang, X., Li, Z., Zheng, Y. and Morgan, R.
2011C.elegans galectins LEC-6 and LEC-10 interact with similar glycoconjugates in the intestine.J Biol Chem.Maduzia, L.L., Yu, E.and Zhang, Y.
2011Characterization and crystal structure of the type IIG restriction endonuclease RM.BpuSI.Nucl.Acids.Res.Shen, B.W., Xu, D., Chan, S.H., Zheng, Y., Zhu, Z., Xu, S.Y.and Stoddard, B.L.
2011Characterization of MspNI (G/GWCC) and MspNII (R/GATCY), novel thermostable Type II restriction endonucleases from Meiothermus sp., isoschizomers of AvaII and BstYIMol Biol Rep.Gupta, R., Xu, S.Y., Sharma, P. and Capalash, N.
20116-Thioguanine reactivates epigenetically silenced genes in acute lymphoblastic leukemia cells by facilitating proteasome-mediated degradation of DNMT1Canc. Res.
2011A highly controllable reconstituted cell-free system--a breakthrough in protein synthesis researchCurr. Pharm. Biotechnol.Ohashi, H., Kanamori, T., Shimizu, Y. and Ueda, T.
2011A methylation and phosphorylation switch between an adjacent lysine and serine determines human DNMT1 stability.Nat Struct Mol Biol.Estève, P.O., Chang, Y., Samaranayake, M., Upadhyay, A.K., Horton, J.R., Feehery, G.R., Cheng, X.and Pradhan, S.
20115-aza-2'-deoxycytidine and interleukin-1 cooperate to regulate matrix metalloproteinase-3 gene expression.Int.J.CancerCouillard, J., Estève, P.O., Pradhan, S.and St-Pierre, Y.
20115-Hydroxymethylcytosine is associated with enhancers and gene bodies in human embryonic stem cellsGen. Biol.Stroud, H., et al.
20116-Thioguanine Reactivates Epigenetically Silenced Genes in Acute Lymphoblastic Leukemia Cells by Facilitating Proteasome-mediated Degradation of DNMT1Cancer Res.Yuan, B., Zhang, J., Wang, H., Xiong, L., Cai, Q., Wang, T., Jacobsen, S., Pradhan, S. andd Wang, Y.
2011A peptide to dimerized translationally controlled tumor protein modulates allergic reactionsJ. Mol. Med.Kim, M.
2011 A reporter system for assaying influenza virus RNP functionality based on secreted Gaussia luciferase activity Virology J. Zhu, W. et al.
2011A set of aspartyl protease-deficient strains for improved expression of heterologous proteins in Kluyveromyces lactisFEMS Yeast Res.Ganatra, M.B., Rainauskas, S., Hong, J.M., Taylor, T.E., Denson, J.P.M., Esposito, D., Read, J.D., Schmeisser, H., Zoon, K.C., Hartley, J.L. and Taron, C.H.
2011A set of aspartyl protease-deficient strains for improved expression of heterologous proteins in Kluyveromyces lactisFEMS Yeast Res.Ganatra, M.B., Rainauskas, S., Hong J.M., Taylor, T.E., Denson, J.P.M., Esposito, D., Read, J.D., Schmeisser, H., Zoon, K.C., Hartley, J.L. and Taron, C.H.
2011A phage-targeting startegy for the design of spatiotemporal drug delivery from grafted matricesFibrogenesis Tissue RepairSawada, R. et al.
2011A piggyBac transposon-based mutagenesis system for the fission yeast Schizosaccharomyces pombe  Nuc. Acids Res. Li, J., Zhang, J.-M., Li, X. et al
2011A Radically Different Mechanism for S-Adenosylmethionine-Dependent Methyltransferases.Science ExpressGrove, T.L., Benner, J.S., Radle, M.I., Ahlum, J.H., Landgraf, B.J., Krebs, C.and Booker, S.J.
2011Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiationNature Ficz, G., et al.
2011Efficient in vivo selection of a novel tumor-associated peptide from a phage displayMoleculesVeleva, A.N. et al.
2011EndonucleasesCurr Protoc Mol BiolNichols, N.M.
2011Disruption of PMR1 in Kluyveromyces lactis improves secretion of calf prochymosinJ. Sci. Food Agric.Feng, Z., et al.
2011DNA LigasesCurr Protoc Mol BiolLohman, G.J., Tabor, S., Nichols, N.M.
2011 Docking-dependent ubiquitination of the interferon regulatory factor-1 tumor suppressor protein by the ubiquitin ligase CHIP J. Biol. Chem. Narayan, V., Pion, E., Landré, V., Müller, P. and Ball, K.L.
2011Engineering a waste management enzyme to overcome cancer resistance to apoptosis: adding DNase1 to the anti-cancer toolbox Cancer Gene Ther. Rosner, K., Kasprzak, M.F., Horenstein, A.C., Thurston, H.L., Abrams, J., Kerwin, L.Y., Mehregan, D.A. and Mehregan, D.R.
2011Expanding the definition of class 3 inteins and their proposed phage origin.J.Bacteriol.Tori, K.and Perler, F.B.
2011Expanding the genetic code of Escherichia coli with PhosphoserineSciencePark, H.S., Hohn, M.J., Umehara, T., Guo. L.T., Osborne, E.M., Benner, J., Noren, C.J., Rinehart, J. and Soll, D.
2011Expression of heparin sulfate sulfotransferases in Kluyveromyces lactisand preparation of PAPSGlycobiology Advance AccessZhou, X., et al.
2011Engineering BL21(DE3) derivative strains to minimize Escherichia coli protein contamination after IMAC purification.Appl. Environ. Microbiol.Robichon, C., Luo, J., Causey, T.B., Benner, J.S. and Samuelson, J.C.
2011Engineering BL21(DE3) derivative strains to minimize Escherichia coli protein contamination after IMAC purification.Appl.Environ.Microbiol.Robichon, C., Luo, J., Causey, T.B., Benner, J.S.and Samuelson, J.C.
2011ExonucleasesCurr.Protoc.Mol.Biol.McReynolds, L.A.and Nichols, N.M.
2011COMBREX – COMputational BRidges to EXperiments.Biochem.Soc.Trans.Roberts, R.J.
2011COMBREX: a project to accelerate the functional annotation of prokaryotic genomesNucleic Acids Res.Roberts, R.J., Chang, Y.C., Hu, Z., Rachlin, J.N., Anton, B.P., Pokrzywa, R.M., Choi, H.P., Faller, L.L., Guleria, J., Housman, G., Klitgord, N., Mazumdar, V., McGettrick, M.G., Osmani, L., Swaminathan, R., Tao, K.R., Letovsky, S., Vitkup, D., Segre, D., Salzberg, S.L., Delisi, C., Steffen, M. and Kasif, S.,
2011Comparative characterization of the PvuRts1I family and application in mapping genomic 5-hydroxymethylcytosine.Nucl.Acids Res.Wang, H., Guan, S., Quimby, A., Cohen-Karni, D., Pradhan, S., Wilson, G.G., Roberts, R.J., Zhu, Z.and Zheng, Y.
2011Chemical Modification of Proteins in Living CellsMethods in Protein ChemistryHanek, A.; Corrêa, I. R., Jr.
2011Chitosan but not chitin activates the inflammasome by a mechanism dependent upon phagocytosis.J Biol Chem.Bueter, C.L., Lee, C.K., Rathinam, V.A., Healy, G.J., Taron, C.H., Specht, C.A.and Levitz, S.M.
2011Cleavage of a model DNA replication fork by a methyl-specific endonuclease.Nucl.Acids.Res.Ishikawa, K., Handa, N.Sears, L., Raleigh, E.A.and Kobayashi, I.
2011Comparative characterization of the PvuRts1I family of restriction enzymes and their application in mapping genomic 5-hydroxymethylcytosineNucleic Acids ResWang H, Guan S, Quimby A, Cohen-Karni D, Pradhan S, Wilson G, Roberts RJ, Zhu Z, Zheng Y
2011Cyclophosphamide Perturbs Cytosine Methylation in Jurkat-T Cells through LSD1-Mediated Stabilization of DNMT1 Protein.Chem.Res.Toxicol.Zhang, J., Yuan, B., Zhang, F., Xiong, L., Pradhan, S.and Wang, Y.
2011Decoding a Substantial Set of Samples in Parallel by Massive SequencingPLoS ONE  Neiman, M., Lundin, S., Savolainen, P., Ahmadian, A.
2011Development of SNAP-Tag Fluorogenic Probes for Wash-Free Fluorescence Imaging.Chembiochem.Sun, X., Zhang, A., Baker, B., Sun, L., Howard, A., Buswell, J., Maurel, D., Masharina, A., Johnsson, K., Noren, C.J., Xu, M-Q and Corrêa, I.R., Jr.
2011Comparitive characterization of the PvuRts11 family and application in mapping genomic 5-hydroxymethylcytosineNucl. Acids Res.
2011Crystallization and preliminary crystallographic analysis of the Type IIL restriction enzyme MmeI in complex with DNA.Acta Crystallogr.F.Structural biology and crystallization communications Callahan, S.J., Morgan, R.D., Jain, R., Townson, S.A., Wilson, G.,G.Roberts, R.J.and Aggarwal, A.K.
2011Cyclophosphamide perturbs cytosine methylation in jurkat-T Cells through LSD1-mediated stabilization of DNMT1 ProteinChem. Res. Toxicol.Zhang, J. et al.
2010Optimization of enzymatic reaction conditions for generating representative pools of cDNA from small RNA.RNAMunafo, D.and Robb, B.
2010Optimizing Clarification and Concentration Steps Using an Automated Process System and Design of Experiments (DoE).BioProcessing Journal Bowen, T.L., Blake, C., Cohen, D.R.and Walsh, K.
2010Organelle-targetable fluorescent probes for imaging hydrogen peroxide in living cells via SNAP-tag protein labeling  J. Am. Chem. Soc. Srikun, D. et al.
2010Open source tool for prediction of genome wide protein-protein interaction network based on ortholog information.Source Code for Biology and Medicine Pedamallu, C.and Posfai, J.
2010Mutations in the Caenorhabditis elegans eIF2{beta} Permit Translation Initiation From Non-AUG Start Codons.GeneticsZhang, Y, Maduzia, L.L.
2010Novel peptide ligands that bind specifically to mouse embryonic stem cellsPeptidesZhao, S. et al.
2010Novel peptide-dendrimer conjugates as drug carriers for targeting nonsmall cell lung cancerInt. J. NanomedicineLiu, J. et al.
2010Peptide ligands that use a novel binding site to target both TGF-β receptorsMol. Biosyst.Li, L. et al.
2010Photoactivatable and photoconvertible fluorescent probes for protein labelingACS Chem. Biol. Asap Maurel D. et al.
2010Polymerase-endonuclease amplification reaction (PEAR) for large-scale enzymatic production of anitsense oligonucleotices.PLoS ONEWang, X., Gou, D.and Xu, S.Y.
2010Potential amyloid plaque-specific peptides for the diagnosis of Alzheimer's diseaseNeurobiol. Aging.Larbanoix, L. et al.
2010Phosphopantetheinyl Transferase-Catalyzed Formation of Bioactive Hydrogels for Tissue EngineeringJ. Am. Chem. Soc. Mosiewicz, K. A. et al.
2010Phage display-derived peptides for osteosarcoma imagingClin. Cancer Res.Sun, X. et al.
2010Labeling cell structures and tracking cell lineage in zebrafish using SNAP-Tag Dev. Dynamics Campos, C. et al.
2010Ligand regulation of the quaternary organization of cell surface M3 muscarinic acetylcholine receptors analyzed by fluorescence resonance energy transfer (FRET) imaging and homogenous time-resolved FRET J. Biol. Chem. Alvarez-Curto J. et al.
2010Lighting up multiprotein complexes: lessons from GPCR oligomerizationTrends Biotechnol Ciruela F. et al.
2010Isolation and initial application of a novel peptide that specifically recognizes the neural stem cells derived from rhesus monkey embryonic stem cellsJ. Biomol. Screen.Zhao, W. et al.
2010In vitro genetic reconstruction of bacterial transcription initiation by coupled synthesis and detection of RNA polymerase holoenzyme.Nucl.Acids.Res.Asahara, H.and Chong, S.
2010In vivo oxidative protein folding can be facilitated by oxidation-reduction cycling.Mol.Microbiol.Shouldice, S.R., Cho, S.H., Boyd, D., Heras, B., Eser, M., Beckwith, J., Riggs, P., Martin, J.L.and Berkmen, M.
2010In vivo transfection of developmentally competent Brugia malayi infective larvaeInt.J.Parasitol.Xu, S., Liu, C., Tzertzinis, G., Elodie Ghedin, E., Christopher, C., Evans, C.C., Kaplan, R.and Unnasch, T.R.
2010Lipoprotein biosynthesis as a target for anti-Wolbachia treatment of filarial nematodes.Johnston, K.L., Wu, B., Guimaraes, A., Ford, L.Slatko, B.E.and Taylor, M.J.
2010Molecular Evidence for a Functional Ecdysone Signaling System in Brugia malayi.PLoS Neglected Tropical Diseases Tzertzinis, G., Egana, A.L., Palli, S.R., Robinson-Rechavi, M., Gissendanner, C.R.,  Liu, C., Unnasch, T.R.and Maina, C.V.
2010Multichannel perfusion culture bioluminescence reporter system for longterm detection in living cells Anal. Biochem. Watanabe, T., Enomoto, T., Takahashi, M., Honma, S., Honma, K. and Ohmiya, Y.
2010Mutations in maltose-binding protein that alter affinity and solubility properties.Appl Microbiol.Biotechnol.Walker, I.H., Hsieh, P.C.and Riggs, P.D.
2010Molecular diagnosis of neonatal diabetes mellitus using next-generation sequencing of the whole exome PLoS One Bonnefond, A., Durand, E., Sand, O. et al
2010Localizable and Highly Sensitive Calcium Indicator Based on a BODIPY Fluorophore Anal. Chem. Kamiya M. and Johnsson K.
2010Massively parallel sequencing of exons on the X chromosome identifies RBM10 as the gene that causes a syndromic form of cleft palate Am. J. Hum. Genet. Johnston, J.J., Teer, J.K., Cherukuri, P.F. et al
2010Methods for detection and measurement of hydrogen peroxide inside and outside of cells Mol. Cells Rhee S. G. et al.
2010The human proteins MBD5 and MBD6 associate with heterochromatin but they do not bind methylated DNAPLoS OneLaget, S., et al.
2010The nucleoporin Nup188 controls passage of membrane proteins across the nuclear pore complex J. Cell Biol.  Theerthagiri, G., Eisenhardt, N., Schwarz, H. and Antonin, W.
2010The role of elF1 in translation initiation codon solection in Caenorhabditis elegans.GeneticsMaduzia, L.L., Moreau, A., Poullet, N., Chaffre, S.and Zhang, Y.
2010The Deinococcus radiodurans Snf2 intein caught in the act: Detection of the Class 3 intein signature Block F.branched intermediate.Protein Sci.Brace, L.E., Southworth, M.W., Tori, K., Cushing, M.L.and Perler, F.
2010Targeted photoswitchable probe for nanoscopy of biological structures ChemBioChem Dellagiacoma, C. et al.
2010Targeting of embryonic stem cells by peptide-conjugated quantum dotsPLoS OneLu, S. et al.
2010The de novo cytosine methyltransferase DRM2 requires intact UBA domains and a catalytically mutated paralog DRM3 during RNA-directed DNA methylation in Arabidopsis thalianaPLoS Genet.Henderson, I.R., Deleris, A., Wong, W., Zhong, X.H., Chin, H.G., Horwitz, G.A., Kelly, K.A., Pradhan, S., Jacobsen, S.E.
2010The tetrahymena argonaute-binding protein Giw1p directs a mature argonaute-siRNA complex to the nucleus Cell Noto, T., Kurth, H., Kataoka, K., Aronica, L., DeSouza, L., Siu, K., Pearlman, R., Gorovsky, M. and Mochizuki, K.
2010Unusual target site disruption by the rare-cutting HNH restriction endonuclease PacI.StructureShen, B.W., Heiter, D.F., Chan, S.H., Wang, H., Xu, S.Y., Morgan, R.D., Wilson, G.G.and Stoddard, B.L.
2010Vascular-Targeting Anti-Oxidant Therapy in a Model of Hypertension and StrokeJ. Cardiovasc. PharmacolGreig, J.A. et al.
2010Unusual target site disruption by the rare-cutting HNH restriction endonuclease PacIStructure Shen, B.W., Heiter, D.F., Chan, S.H., Wang, H., Xu, S.Y., Morgan, R.D., Wilson, G.G. and Stoddard, B.L.
2010The Wolbachia endosymbiont as an anti-filarial nematode target.SymbiosisSlatko, B.E., Taylor, M.J.& Foster, J.M.
2010Transmembrane delivery and biological effect of human growth hormone via a phage displayed peptide in vivo and in vitroJ. Pharm. Sci.Zhang, T. et al.
2010Triplet imaging of oxygen consumption during the contraction of a single smooth muscle cellBiophys. J. Geissbuehler M. et al.
2010Rapid optical imaging of EGF receptor expression with a single-chain antibody SNAP-tag fusion proteinEur. J. Med. Mol. Imaging Kampmeier, F. et al.
2010REBASE – a database for DNA restriction and modification: enzymes, genes and genomes.Nucl.Acids.Res.Roberts, R.J., Vincze, T., Posfai, J., Macelis, D.
2010Reduced evolvability of Escherichia coli MDS42, an IS-less cellular chassis for molecular and synthetic biology applications.Microbial Cell Factories Umenhoffer, K., Feher, T., Baliko, G., Ayaydin, F.Posfai, J., Blattner, F.R.and Posfai, G.
2010Rapid electronic detection of probe-specific microRNAs using thin nanopore sensorsNature NanotechWanunu, M., et al.
2010Protein mediated miRNA detection and siRNA enichment using p19.BioTechniquesJin, J., Cid, M., Poole, C.B.and McReynolds, L.A.
2010Purification of untagged HIV-1 reverse transcriptase by affinity chromatographyProtein Expr. Purif.Lu, M., et. al.
2010Radiation-guided drug delivery to mouse models of lung cancerClin. Cancer Res.Hairiri, G. et al.
2010Repositioning of an existing drug for the neglected tropical disease Onchocerciasis.Proc.Natl.Acad.Sci.USAGloeckner, C., Garner, A.L., Mersha, F., Oksov, Y., Tricoche, N., Eubanks, L.M., Lustigman, S., Kaufmann, G.F.and Janda, K.D.
2010Sequence-specific cleavage of RNA by Type II restriction enzymes.Nucl.Acids.Res.Murray, I.A., Stickel, S.K.and Roberts, R.J.
2010Splicing of the Mycobacteriophage Bethlehem DnaB intein: identification of a new mechanistic class of inteins that contain an obligate block F nucleophile.Journal of Biological ChemistryTori, K., Dassa, B., Johnson, M.A., Southworth, M.W., Brace, L.E., Ishino, Y., Pietrokovski, S., and Perler, F.B.
2010Stimulated emission depletion nanoscopy of living cells using SNAP-Tag fusion proteinsBiophys. J.  Hein B. et al.
2010Secretory production of recombinant proteins in Escherichia coliRecent Patents on BiotechnologyYoon, S.H., Kim, S.K., and Kim J.F.
2010Restrained expression, a method to overproduce toxic membrane proteins by exploiting operator–repressor interactions Pro. Sci. Narayanan, A., Ridilla, M. and Yernool, D.A.
2010Revolutionizing membrane protein overexpression in bacteria Micro. Biotech. Schlegel, S., Klepsch, M., Gialama, D., Wickström, D., Slotboom, D.J. and de Gier, J.
2010Ribosome display with the PURE technologyMethods Mol Biol. Ueda, T., Kanamori, T., Ohashi, H.
2010BspRI restriction endonuclease: cloning, expression in E.coli and sequential cleavage mechanism.Nucleic Acids Research Advance Access Rasko, T., Der, A., Klement, E., Slaska-Kiss, K., Posfai, E., Medzihradsky, K.F., Marshak, D.R., Roberts, R.J., Kiss, A.
2010Chemically ubiquitylated PCNA as a probe for eukaryotic translesion DNA synthesisNat. Chem. Biol. Chen, J., et al.
2010Chromatin particle spectrum analysis: a method for comparative chromatin structure analysis using paired-end mode next-generation DNA sequencing Nucleic Acids Research Kent, N.A., Adams, S., Moorhouse, A., and Paszkiewicz, K.
2010Biodiversity assessment: State-of-the-art techniques in phylogenomics and species identification Am. J. Bot. Steele, P.R and Pires, J.C.
2010Bacterial charity work leads to population-wide resistanceNatureLee, H.H., Molla, M.N., Cantor, C.R., Collina, J.J.
2010Base Flipping.Encyclopedia of Life SciencesCheng, X.and Roberts, R.J.
2010Benzylguanine Thiol self-assembled monolayers for the immobilization of SNAP-tag proteins on microcontact-printed surface structuresLangmuir Engin S. et al.
2010“Cloning and bioinformatic identification of small RNAs in the filarial nematode,  Brugia malayi”.Mol.Biochem.Parasitol.Poole, C.B.,   Davis, P.J.,  Jin, J.and McReynolds, L.A.
2010Comparative genomic hybridization of Bifidobacterium longum strains reveals broad conservation of milk utilization genes in subsp. infantisAppl. Environ. Microbiol. LoCascio, R.G., Desai, P., Sela, D.A., Weimer, B., and Mills, D.A.
2010Conservation and divergence of methylation patterning in plants and animalsProc. Natl. Acad. Sci. USA Feng, S., Cokusb, S.J., Zhang, X. et al
2010Constitutive secretion in Tetrahymena thermophila.Eukaryot Cell Madinger, C.L., collins, K., Fields, L.G., Taron, C.H.and Benner, J.S.
2010Cofactor requirement of HpyAV restriction endonuclease.PLoS ONEChan, S.H., Opitz, L., Higgins, L., O'loane, D.and Xu, S.Y.
2010Cloning of NruI and Sbo13I restriction and modification sstems in E.coli and amino acid sequence comparison of M.NruI and M.Sbo13I with other amino-methyltransferases.BMC Res NotesZhu, Z., Pedamallu, C.S., Fomenkov, A., Benner, J.and Xu, S.Y.
2010Cloning the human vitamin D receptor into the pTwin-1 expression vectorJ Steroid Biochem Mol BiolCollins, E. D., et. al.
2010Codon optimization of the calf prochymosin gene and its expression in Kluyveromyces lactisWorld J. Microbiol. Biotechnol.Feng, Z., et al.
2010A novel peptide specifically targeting the vasculature of orthotopic colorectal cancer for imaging detection and drug deliveryJ. Control ReleaseLi, Z.J. et. al.
2010A set of aspartyl protease-deficient strains for improved expression of heterologous proteins in Kluyveromyces lactis.FEMS Yeast Res.Ganatra, M.B., Vainauskus, S., Hong, J.M., Taylor, T.E., Denson, J.P., Esposito, D., Read, J.D., Schmeisser, H., Zoon, K.C., Hartley, J.L.and Taron, C.H.
2010A unique family of Mrr-like modification-dependent restriction endonucleasesNucl. Acids Res.Zheng, Y. et al.
2010A novel melanoma-targeting peptide screened by phage display exhibits antitumor activityJ. Mol. Med.Matsuo, A.L. et al.
2010A functional NR4A nuclear receptor DNA-binding domain is required for organ development in Caenorhabditis elegans.GenesisHeard, M., Maina, C.V., Morehead, B.E., Hoener, M.C., Nguyen, T.Q., Williams, C.C., Rowan, B.G.and Gissendanner, C.R.
2010A highly controllable reconstituted cell-free system--a breakthrough in protein synthesis researchCurr. Pharm. Biotechnol.Ohashi, H., Kanamori, T., Shimizu, Y. and Ueda, T.
2010A human PMS2 homologue from Aquifex aeolicus stimulates an ATP-dependent DNA helicase.J Biol.ChemMauris, J.and Evans, T.C., Jr.
2010Activation of DNA Cleavage by Oligomerization of DNA Bound SgrAI.BiochemistryPark, C.K., Stiteler, A.P., Shah, S., Ghare, M.I., Bitinaite, J.and Horton, N.C.
2010Artificial neural network study on organ-targeting peptidesJ. Comput. Aided. Mol. Des. Jung, E. et al.
2010Asymmetric DNA recognition by the OkrAI endonuclease, an isoschizomer of BamHI.Nucl.Acids.Res.Vanamee, E.S., Viadiu, H., Chan, S.H., Ummat, A., Hartline, A.M., Xu, S.Y.and Aggarwal, A.K.
2010Asymmetric Wolbachia Segregation during Early Brugia malayi Embryogenesis Determines Its Distribution in Adult Host Tissues.PLoS Negl Trop DisLandmann, F., Slatko, B., Foster, J.M.and Sullivan, W.
2010Anti-tumor effects of a novel chimeric peptide on S180 and H22 xenografts bearing nude micePeptides Wu, D. et al.
2010Alteration of Sequence Specificity of the Type IIS Restriction Endonuclease BtsIPLoS ONEGuan, S., Blanchard, A., Zhang, P.and Zhu, Z.
2010An EcR homolog from the filarial parasite, Dirofilaria immitis requires a ligand-activated partner for transactivation.Mol.Biochem.Parasitol.Shea, C., Richer, J., Tzertzinis, G.and Maina, C.V.
2010Analysis of p300/CBP histone acetyltransferase regulation using circular permutation and semisynthesisJ. Am. Chem. Soc. Karukurichi, K. et al.
2010FRT-Seq: amplification-free, strand-specific transciptome sequencingNature Methods Mamanova, L., Andrews, R.M., James, K.D., Sheridan, E.M., Ellis, P.D., Langford, C.F., Ost, T.W., Collins, J.E. and Turner, D.J.
2010Functional characterization of the YmcB and YqeV tRNA methylthiotransferases of Bacillus subtilis.Nucl.Acids.Res.Anton, B.P., Russell, S.P., Vertrees, J., Kasif, S., Raleigh, E.A., Limbach, P.A.and Roberts, R.J.
2010Functional Immobilization and Patterning of Proteins by an Enzymatic Transfer ReactionAnal. Chem. Waichman S. et al.
2010Frequent mutations of chromatin remodeling gene ARID1A in ovarian clear cell carcinomaScience  Jones, S., Wang, T.-L., Shih, Ie-M., et al
2010Expressed protein ligation for the preparation of fusion proteins with cell penetrating peptides for endotoxin removal and intracellular deliveryBiochim Biophys Acta Yu, H. H., et. al.
2010Expression, purification, phosphorylation and characterization of recombinant human statherinProtein Expr Purif.Manconi, B., et. al.
2010Fura-2FF-based calcium indicator for protein labeling Org. Biomol. Chem. Ruggiu A. A. et al.
2010Identification of a new peptide for fibrosarcoma tumor targeting and imaging in vivoJ. Biomed. Biotechnol. Wu, C.C. et al.
2010Identification of a novel muscle targeting peptide in mdx micePeptidesSeow, Y. et al.
2010In vitro genetic reconstruction of bacterial transcription initiation by coupled synthesis and detection of RNA polymerase holoenzyme Nucleic Acids Res. Asahara, H. and Chong, S.
2010Identification and Phylogenetic Analysis of Dirofilaria Ursi (Nematoda: Filarioidea) from Wisconsin Black Bears (Ursus americanus) and its Wolbachia EndosymbiontJ Parasitol.Michalski, S., Bain, O., Fischer, K.Fishcher, P., Kumar, S.and Foster, J.
2010Gene synthesis of the bovine prochymosin gene and high-level expression in Kluyvermyces lactisSheng Wu Gong Cheng Xue BaoYuan W, et al.
2010Genome-wide mapping of alternative splicing in Arabidopsis thaliana Genome Res Filichkin, S.A., Priest, H.D., Given, S.A., et al
2010Heterologous expression of glucose oxidase in the yeastKluyveromyces marxianusMicrob. Cell Fact.Rocha, S.N., et al.
2010Designed semisynthetic protein inhibitors of ub/ubl e1 activating enzymesJ. Am. Chem. Soc. Lu, X., et al.
2010Development of SNAP-tag-mediated live cell labeling as an alternative to GFP in Porphyromonas gingivalisFEMS Immunol. Med. Microbiol.  Nicolle O. et al.
2010Discrimination of methylcytosine from hydroxymethylcytosine in DNA molecularJ. Am. Chem. Soc.Wanunu, M. et al.
2010Design of a potent D-peptide HIV-1 entry inhibitor with a strong barrier to resistanceJ. Virol.Welch, B.D. et al.
2010Controlled expression of functional miR-122 with a ligand inducible expression system.BMC Biotechnology Shea, C.and Tzertzinis, G.
2010Coordination sphere of the third metal site is essential to the activity and metal selectivity of alkaline phosphatases.Protein Sci.Koutsioulis, D., Lyskowski, A.Maki, S., Guthrie, E., Feller, G., Bouriotis, V.and Heikinheimo, P.
2010 Covalent quantum dot receptor linkage via the acyl carrier protein for single-molecule tracking, internalization, and trafficking studiesBioTechniques Zelman-Femiak, M. et al.
2010Discrimination of Methylcytosine from Hydroxymethylcytosinein DNA Molecular.J Am Chem Soc Wanunu, M., Cohen-Karni, D., Johnson, R.R., Fields, L., Benner, J., Peterman, N., Zheng, Y., Klein, M.L., Drndic, M.
2010Engineering of a synthetic electron conduit in living cellsProc. Natl. Acad. Sci. USAJensen, H.M., et al.
2010Evolution of Bacterial Phosphoglycerate Mutases: Non-homologous Isofunctional Enzymes Undergoing Gene Losses, Gains and Lateral Transfers.PLoS ONEFoster, J.M., Davis, P.J., Raverdy, S., Sibley, M.H., Raleigh, E.A., Kumar, S.and Carlow, C.K.S.
2010Evolutionary divergence in the fungal response to fluconazole revealed by soft clusteringGen. Bio. Kuo, D., et al.
2010Engineering Nt.BtsCI and Nb.BtsCI nicking enzymes and applications in generating long overhangs.Nucl.Acids.Res.Too, P.H., Zhu, Z., Chan, S.H.and Xu, S.Y.
2010D-peptide inhibitors of the p53-MDM2 interaction for targeted molecular therapy of malignant neoplasmsProc. Natl. Acad. Sci.Liu, M. et al.
2010Endosymbiont DNA in endobacteria-free filarial nematodes indicates ancient horizontal genetic transfer.PLoS ONEMcNulty, S.N., Foster, J.M., Mitreva, M., Dunning-Hotopp, J.C., Martin, J., Fischer, K., Wu, B., Davis, P.J., Kumar, S., Brattig, N.W., Slatko, B.E., Weil, G.J.and Fischer, P.U.
2010Engineering BspQI nicking enzymes and application of N.BspQI in DNA labeling and production of single-strand DNA Protein Exp PurifZhang, P., Too, P.H., Samuelson, J.C., Chan, S.H., Vincze, T., Doucete, S., Backstrom, S., Potamousis, K.D., Schramm, T.M., Forrest, D., Schwartz, D.C., Xu, S.Y.
2013Role of DNA methylation in expression and transmission of porcine endogenous retroviruses.Journal of Virology.Matousková, M., Vesely, P., Daniel, P., Mattiuzzo, G., Hector, R.D., Scobie, L., Takeuchi, Y. and Hejnar, J.
2013ROLE OF HUMAN HYPOXANTHINE GUANINE PHOSPHORIBOSYLTRANSFERASE IN ACTIVATION OF THE ANTIVIRAL AGENT T-705 (FAVIPIRAVIR)Molecular Pharmacology Fast ForwardLieve Naesens, Luke Guddat, Dianne Keough, André B.P. van Kuilenburg, Judith Meijer, Johan Vande Voorde and Jan Balzarini
2013RNA-Methylation-Dependent RNA Processing Controls the Speed of the Circadian ClockCellFustin, J.-M. et al.
2013RNAi triggered by specialized machinery silences developmental genes and retrotransposonsNatureYamanaka, S., Mehta, S., Reyes-Turcu, F.E., Zhuang, F., Fuchs, R.T., Rong, Y., Robb, G.B. and Grewal, S.I.
2013Segregation of Family A G Protein Coupled Receptor Protomers in the Plasma MembraneMolecular PharmacologyAnthony Gavalas, Tien-Hung Lan, Qiuju Liu, Ivan R. Corrêa, Jr., Jonathan A. Javitch, and Nevin A. Lambert
2013Structure of a Naegleria Tet-like dioxygenase in complex with 5-methylcytosine DNANatureHashimoto, H., Pais, J.E., Zhang, X., Saleh, L., Qing Fu, Z., Dai, N., Correa, I.R. Jr., Zheng, Y. and Cheng X.
2013Substrates for Improved Live-Cell Fluorescence Labeling of SNAP-tagCurrent Pharmaceutical DesignIvan R. Corrêa Jr, Brenda Baker, Aihua Zhang, Luo Sun, Christopher R. Provost, Grazvydas Lukinavicius, Luc Reymond, Kai Johnsson, and Ming-Qun Xu
2013Selection of a Mimotope Peptide of S-adenosyl-l-homocysteine and Its Application in ImmunoassaysMoleculesWu C. and Tzertzinis G. 
2013Single-stranded DNA library preparation for the sequencing of ancient or damaged DNANat. Protoc.Gansauge MT, Meyer M.
2013Ribosome profiling provides evidence that large noncoding RNAs do not encode proteinsCellGuttman M, Russell P, Ingolia NT, Weissman JS, Lander ES
2013Molecular dissection of the methylome of Burkholderia cenocepacia J2315FEBS J.Fomenkov, A., Clark, T., Spittle, K., Anton, B.M., Vincze, T., Korlach, J., Roberts, R.J.
2013Natural Zinc Ribbon HNH Endonucleases and Engineered Zinc Finger Nicking EndonucleaseNucleic Acids Res.Xu, S.Y. and Gupta, Y.K.
2013Interdomain lateral gene transfer of an essential ferrochelatase gene in human parasitic nematodesProc. Nat. Acad. Sci. Wu, B., Novelli, J., Jiang, D., Dailey, H.A., Landmann, F., Ford, L., Taylor, M.J., Carlow, C.K.S., Kumar, S., Foster, J.M. and Slatko, B.E.
2013Massively parallel characterization of restriction endonucleasesScopusKamps-Hughes, N., Quimby, A., Zhu, Z., Johnson, E.A.
2013Prokaryotic super program advisory committee DOE Joint Genome Institute, Walnut Creek, CA, March 27, 2013Stand Genomic ScienceGarrity, G.M. Banfield, J., Eisen, J., van der Lelie, N., McMahon, T., Rusch, D., Delong, E., Moran, M.A., Currie, C., Fuhrman, J., Hallam, S., Hugenholtz, P., Moran, N., Nelson, K., Roberts, R., Stepanauskas, R.
2013Restriction endonuclease TseI cleaves A:A and T:T mismatches in CAG and CTG repeatsNucleic Acids ResMa L, Chen K, Clarke DJ, Nortcliffe CP, Wilson GG, Edwardson JM, Morton AJ, Jones AC, Dryden DT
2013Protein engineering: single or multiple site-directed mutagenesis Methods Mol Biol. Hsieh, P.C. and Vaisvila, R.
2013Quantifying Elongation Rhythm during Full-Length Protein SynthesisRosenblum G, Chen C, Kaur J, Cui X, Zhang H, Asahara H, Chong S, Smilansky Z, Goldman YE, Cooperman BS.
2013The Molecular Biology, Immunology and Chemotherapy of Wolbachia Bacterial Endosymbionts of Filarial NematodesParasitic Namatodes: Molecular Biology, Biochemistry, Immunology Foster, J.M., Hoerauf, A., Slatko, B.E. and Taylor, M.J.
2013The role of the methyltransferase domain of bifunctional restriction enzyme RM.BpuSI in cleavage activityPLOS ONE Sarrade-Loucheur, A., Xu, S-Y. and Chan, S-H.
2013Two new restriction endonucleases from Proteus vulgaris.Nucl.Acids Res.Gingeras, T.R., Greenough, L., Schildkraut, I., and Roberts, R.J.
2013VectorsBrenner's Encyclopedia of GeneticsAnton, B.P.
2013The Xist lncRNA exploits three-dimensional genome architecture to spread across the X chromosomeScienceEngreitz JM, Pandya-Jones A, McDonel P, Shishkin A, Sirokman K, Surka C, Kadri S, Xing J, Goren A, Lander ES, Plath K, and Guttman M
2013Three-color single molecule imaging shows WASP detachment from Arp2/3 complex triggers actin filament branch formation eLifeBenjamin A Smith, Shae B Padrick, Lynda K Doolittle, Karen Daugherty-Clarke, Ivan R Corrêa Jr, Ming-Qun Xu, Bruce L Goode3, Michael K Rosen, Jeff Gelles
2013The genetic code constrains yet facilitates Darwinian evolutionNucleic Acids ResFirnberg E, Ostermeier M
2013Ten eleven translocation enzymes and 5-hydroxymethylation in mammalian development and cancerAdv Exp Med BiolKinney, S.R. and Pradhan, S.
2013The advantages of SMRT™ sequencing.  Genome Biology Roberts, R.J., Carneiro, M.O., Schatz, M.C.
2013The COMBREX project design methodology and initial resultsPLOS ONE Anton BP, Chang YC, Brown P, Choi HP, Faller LL, Guleria J, Hu Z, Klitgord N, Levy-Moonshine A, Maksad A, Mazumdar V, McGettrick M, Osmani L,Pokrzywa R, Rachlin J, Swaminathan R, Allen B, Housman G, Monahan C, Rochussen K, Tao K, Bhagwat AS, Brenner SE, Columbus L, de Crécy-Lagard V, Ferguson D, Fomenkov A, Gadda G, Morgan RD, Osterman AL, Rodionov DA, Rodionova IA, Rudd KE, Söll D, Spain J, Xu SY, Bateman A,Blumenthal RM, Bollinger JM, Chang WS, Ferrer M, Friedberg I, Galperin MY, Gobeill J, Haft D, Hunt J, Karp P, Klimke W, Krebs C, Macelis D, Madupu R, Martin MJ, Miller JH, O'Donovan C, Palsson B, Ruch P, Setterdahl A, Sutton G, Tate J, Yakunin A, Tchigvintsev D, Plata G, Hu J, Greiner R, Horn D,Sjölander K, Salzberg SL, Vitkup D, Letovsky S, Segrè D, DeLisi C, Roberts RJ, Steffen M, Kasif S.
2013The First Identification and Retrospective Study of Severe Fever With Thrombocytopenia Syndrome in JapanThe Journal of Infectious DiseasesToru Takahashi, Ken Maeda, Tadaki Suzuki, Aki Ishido, Toru Shigeoka, Takayuki Tominaga, Toshiaki Kamei, Masahiro Honda, Daisuke Ninomiya, Takenori Sakai, Takanori Senba, Shozo Kaneyuki, Shota Sakaguchi, Akira Satoh, Takanori Hosokawa, Yojiro Kawabe, Shintaro Kurihara, Koichi Izumikawa, Shigeru Kohno, Taichi Azuma, Koichiro Suemori, Masaki Yasukawa, Tetsuya Mizutani, Tsutomu Omatsu, Yukie Katayama, Masaharu Miyahara, Masahito Ijuin, Kazuko Doi, Masaru Okuda, Kazunori Umeki, Tomoya Saito, Kazuko Fukushima, Kensuke Nakajima, Tomoki Yoshikawa, Hideki Tani, Shuetsu Fukushi, Aiko Fukuma, Momoko Ogata, Masayuki Shimojima, Noriko Nakajima, Noriyo Nagata, Harutaka Katano, Hitomi Fukumoto, Yuko Sato, Hideki Hasegawa, Takuya Yamagishi, Kazunori Oishi, Ichiro Kurane, Shigeru Morikawa, Masayuki Saijo
2013The Formin Daam1 and Fascin Directly Collaborate to Promote Filopodia FormationCurrent Biology Jaiswal, R., Breitsprecher, D., Collins, A., Correa, I.R., Jr., Xu, M.-Q. and Goode, B.L.
2013The complex methylome of the human gastric pathogen Helicobacter pyloriNucleic Acids ResearchJuliane Krebes, Richard D. Morgan, Boyke Bunk, Cathrin Spröer, Khai Luong, Raphael Parusel, Brian P. Anton, Christoph König, Christine Josenhans, Jörg Overmann, Richard J. Roberts, Jonas Korlach, Sebastian Suerbaum
2013The Evolution of Genes: the Chicken Preproinsulin GeneCellPerler, F.B.and Efstratiadis, A.
2013Characterization of human plasma-derived exosomal RNAs by deep sequencingBMC GenomicsHuang, X. et al.
2013Characterization of the 5-hydroxymethylcytosine-specific DNA restriction endonucleasesNucleic Acids Res.Borgaro, J.G. and Zhu, Z.
2013Biochemical Characterization of Hypothetical Proteins from Helicobacter pylori.PLOS ONE Choi HP, Juarez S, Ciordia S, Fernandez M, Bargiela R, Albar JP, Mazumdar V, Anton BP, Kasif S, Ferrer M, Steffen M.
2013Characterization of DNA methyltransferase specificities using single-molecule, real-time DNA sequencingNucleic Acids ResearchClark, T.A., Murray, I.A., Morgan, R.D., Kislyuk, A.O., Spittle, K.E., Boitano, M., Fomenkov, A., Roberts, R.J. and Korlach, J.
2013Complete Genome Sequence of a Multidrug-Resistant Salmonella enterica Serovar Typhimurium var. 5- Strain Isolated from Chicken BreastGenome AnnouncHoffmann M, Muruvanda T, Allard MW, Korlach J, Roberts RJ, Timme R, Payne J, McDermott PF, Evans P, Meng J, Brown EW, Zhao S
2013DNMT1-interacting RNAs block gene-specific DNA methylationNatureAnnalisa Di Ruscio, Alexander K. Ebralidze, Touati Benoukraf, Giovanni Amabile, Loyal A. Goff, Jolyon Terragni, Maria Eugenia Figueroa, Lorena Lobo De Figueiredo Pontes, Meritxell Alberich-Jorda, Konstantin K. Ebralidze, Sriharsa Pradhan, John L. Rinn, Daniel G. Tenen
2013Efficient and specific gene knockdown by small interfering RNAs produced in bacteriaNat Biotechnol.Huang, L., Jin, J., Deighan, P., Liner, E., McReynolds, L. and Lieberman, J.
2013ConjugationBrenner's Encyclopedia of GeneticsRaleigh, E.A. and Low, K.B.
2013Digital droplet PCR for rapid quantification of donor DNA in the circulation of transplant recipients as a potential universal biomarker of graft injury.Clin. Chem.Beck J, Bierau S, Balzer S, Andag R, Kanzow P, Schmitz J, Gaedcke J, Moerer O, Slotta JE, Walson P, Kollmar O, Oellerich M, Schütz E.
2013 Biochemical and physiological characterization of fut4 and fut6 mutants defective in arabinogalactan-protein fucosylation in Arabidopsis.J. Exp. Bot.Liang, Y., Basu, D., Pattathil, S., Xu, W.L., Venetos, A., Martin, S.L., Faik, A., Hahn, M.G. and Showalter, A.M.
2013A near-infrared fluorophore for live-cell super-resolution microscopy of cellular proteins. Nature ChemistryLukinavicius, G., Umezawa, K., Olivier, N., Honigmann, A., Yang, G., Plas, T., Mueller, M., Reymond, L., Correa, I.R., Jr., Luo, Z.-G., Schultz, C., Lemke, E.A., Heppenstall, P., Eggeling, C., Manley, S. and Johnsson, K.
2013A Protocol for Construction of Gene Targeting Vectors and Generation of Homologous Recombinant Embryonic Stem CellsMethods in Molecular BiologyHicham Bouabe, Klaus Okkenhaug
2013A Method for Selectively Enriching Microbial DNA from Contaminating Vertebrate Host DNAPLOS ONEGeorge R. Feehery, Erbay Yigit, Samuel O. Oyola, Bradley W. Langhorst, Victor T. Schmidt, Fiona J. Stewart, Eileen T. Dimalanta, Linda A. Amaral-Zettler, Theodore Davis, Michael A. Quail, Sriharsa Pradhan
2013Abortive TransductionBrenner's Encyclopedia of GeneticsRaleigh, E.A.
2013Anti-Wolbachia drug discovery and development: safe macrofilaricides for onchocerciasis and lymphatic filariasisParasitologyTaylor, M.J., Hoerauf, A., Townson, S., Slatko, B.E. and Ward, S.A
2013Bacterial GenesBrenner's Encyclopedia of GeneticsRaleigh, E.A.
2013Active stabilization of human endothelial nitric oxide synthase mRNA by hnRNP E1 protects against antisense RNA and microRNAsMol Cell BiolHo, J.J., Robb, G.B., Tai, S.C., Turgeon, P.J., Mawji, I.A., Man, H.S. and Marsden, P.A.
2013Alternative spliceosome assembly pathways revealed by single-molecule flourescence microscopy.Cell RepShcherbakova, I., Hoskins, A.A., Friedman, L.I., Serebrov, V., Correa, I.R., Jr., Xu, M-Q., Gelles, J. and Moore, M.J.
2013High-resolution enzymatic mapping of genomic 5-hydroxymethylcytosine in mouse embryonic stem cellsCell RepSun Z, Terragni J, Borgaro JG, Liu Y, Yu L, Guan S, Wang H, Sun D, Cheng X, Zhu Z, Pradhan S, Zheng Y
2013High-Resolution Enzymatic Mapping of Genomic 5-Hydroxymethylcytosine in Mouse Embryonic Stem CellsCell RepSun, Z., Jolyon, T., Borgaro, J.G., Liu, Y., Yu, L., Guan, S., Wang, H., Sun, D., Cheng, X., Zhu, Z., Pradhan, S. and Zheng, Y.
2013Hedgehog Signaling Regulates MyoD Expression and ActivityJ Biol ChemAnastassia Voronova Erin Coyne, Ashraf Al Madhoun, Joel V. Fair, Neven Bosiljcic, Catherine St-Louis, Grace Li, Sherry Thurig, Valerie A. Wallace, Nadine Wiper-Bergeron, and Ilona S. Skerjanc
2013High-throughput sequencing of methylated cytosine enriched by modification-dependent restriction endonuclease MspJIBMC GeneticsXiaojun Huang, Hanlin Lu, Jun-Wen Wang, Liqin Xu, Siyang Liu, Jihua Sun, Jun Wang, Fei Gao
2013Increasing cleavage specificity and activity of restriction endonuclease KpnINucleic Acids ResearchKommireddy Vasu, Easa Nagamalleswari, Mai Zahran, Petra Imhof, Shuang-yong Xu, Zhenyu Zhu, Siu-Hong Chan, Valakunja Nagaraja
2013Highlights of the DNA cutters: a short history of the restriction enzymesNucleic Acids ResearchWil A. M. Loenen, David T. F. Dryden, Elisabeth A. Raleigh, Geoffrey G. Wilson, and Noreen E. Murray
2013High-resolution enzymatic mapping of 5-hydroxymethylcytosine in mouse embryonic stem cellsCell Rep.Sun, Z. et al.
2013Extensively duplicated and transcriptionally active recent lateral gene transfer from a bacterial Wolbachia endosymbiont to its host filarial nematode Brugia malayiBMC GenomicsIonnidis, P., Johnston, K.L., Riley, D.R., Kumar, N., White, J.R., Olarte, K.T., Ott, S., Tallon, L.J., Foster, J.M., Taylor, M.J. and Dunning-Hotopp, J.C.
2013Fast mitochondrial DNA isolation from mammalian cells for next-generation sequencingBiotechniquesWilber Quispe-Tintaya, Ryan R White, Vasily N Popov, Jan Vijg, Alexander Y Maslov
2013Evaluation of UDP-GlcN Derivatives for Selective Labeling of 5-(Hydroxymethyl)cytosineChembiochemDai N, Bitinaite J, Chin HG, Pradhan S, Corrêa IR Jr.
2013Faster Protein Splicing with the Nostoc punctiforme DnaE Intein Using Non-native Extein ResiduesJ Biol ChemCheriyan, M., Pedamallu, C.S., Tori, K. and Perler, F.
2013Gene synthesis by assembly of deoxyuridine-containing oligonucleotidesMethods Mol Biol. Vaisvila, R. and Bitinaite, J.
2013Fidelity index determination of DNA methyltransferasePLoS OneBorgaro, J.G., Benner, N., Zhu, Z.
2013Fully assembled genome sequence for Salmonella enterica subsp. Enterica Serovar Javiana CFSAN001992.  Genome Announcements Allard, M.W. Muruvanda, T., Strain, E., Timme, R., Luo, Y., Wang, C., Keys, C.E., Payne, J., Cooper, T. Luong, K., Song, Y., Chin, C.-S., Korlach, J., Roberts, R.J., Evans, P., Musser, S.M., Brown, E.W.
2016Perpetuating the homing endonuclease life cycle: identification of mutations that modulate and change I-TevI cleavage preferenceNucleic Acids Res.Roy, A.C., Wilson, G.G. and Edgell, D.R.
2016Perpetuating the homing endonuclease life cycle: identification of mutations that modulate and change I-TevI cleavage preference.Nucleic Acids Res.Roy, A.C., Wilson, G.G. and Edgell, D.R.
2016Phenotypic and molecular analysis of the effect of 20 hydroxyecdysone on the human filarial parasite Brugia malayiInt J ParasitolMhashilkar, A.S., Adapa, S.R., Jiang, R.H., Williams, S.A., Zaky, W., Slatko, B.E., Luck, A.N., Moorhead, A.R. and Unnasch, T.R.
2016Novel Methyltransferase Recognition Motif Identified in Chania multitudinisentens RB-25(T) gen. nov., sp. nov.Front Microbiol Ee, R., Lim, Y.L., Yin, W.F., See-Too, W.S., Roberts, R.J. and Chan, K.G.
2016omplete Genome Sequence and Methylome Analysis of Bacillus globigii ATCC 49760.Genome Announc.Morgan, R.D.
2016One-pot system for synthesis, assembly, and display of functional single-span membrane proteins on oil-water interfacesProc. Natl Acad Sci USAYunker, P.J., Asahara, H., Hung, K.C., Landry, C., Arriaga, L.R., Akartuna, I., Heyman, J., Chong, S., Weitz, D.A.
2016Phenotypic and molecular analysis of the effect of 20-hydroxyecdysone on the human filarial parasite Brugia malayi.Int J ParasitolMhashilkar, A.S., Adapa, S.R., Jiang, R.H., Williams, S.A., Zaky, W., Slatko, B.E., Luck, A.N., Moorhead, A.R. and Unnasch, T.R.
2016Quantitative profiling of glycans and glycopeptides: an informatics' perspectiveCurr Opin Struct Biol.Walsh, I., Zhao, S., Campbell, M., Taron, C.H. and Rudd, P.M.
2016RAD mapping reveals an evolving, polymorphic and fuzzy boundary of a plant pseudoautosomal region.Mol Ecol. Qiu S, Bergero R, Guirao-Rico S, Campos JL, Cezard T, Gharbi K, Charlesworth D.
2016RAD mapping reveals an evolving polymorphic and fuzzy boundary of a plant pseudoautosomal regionMol Ecol. Qiu S, Bergero R, Guirao-Rico S, Campos JL, Cezard T, Gharbi K, Charlesworth D.
2016Phytochromes function as thermosensors in Arabidopsis.ScienceJung, J-H. et al.
2016Plasmid-based one-pot saturation mutagenesisNature MethodsWrenbeck E.E., Klesmith J.R., Stapleton J.A., Adeniran A., Tyo K.E., & Whitehead T.A
2016Profiling of core fucosylated N-glycans using a novel bacterial lectin that specifically recognizes α1,6 fucosylated chitobiose. Sci Rep.Vainauskas, S., Duke, R.M., McFarland, J., McClung, C., Ruse, C. and Taron, C.H.
2016Novel m4C modification in type I restriction-modification systems.Nucleic Acids Res. Morgan, R.D., Luyten, Y.A., Johnson, S.A., Clough, E.M., Clark, T.A. and Roberts, R.J.
2016Hydroxymethyluracil modifications enhance the flexibility and hydrophilicity of double-stranded DNA.Nucleic acids researchCarson, S., Wilson, J., Aksimentiev, A., Weigele, P. R., & Wanunu, M.
2016Identification of Ecdysone Hormone Receptor Agonists as a Therapeutic Approach for Treating Filarial Infections.PLoS Negl Trop Dis.Mhashilkar, A.S., Vankayala, S.L., Liu, C., Kearns, F., Mehrotra, P., Tzertzinis, G., Palli, S.R., Woodcock, H.L. and Unnaschm, T.R.
2016Illuminating uveitis: metagenomic deep sequencing identifies common and rare pathogens.Genome MedicineDoan, T. et al.
2016High-temperature single-molecule kinetic analysis of thermophilic archaeal MCM helicasesNucleic Acids Res.Schermerhorn, K.M., Tanner, N., Kelman, Z. and Gardner, A.F.
2016High-efficiency generation of induced pluripotent mesenchymal stem cells from human dermal fibroblasts using recombinant proteins.Stem Cell Res Ther.Chen, F., Zhang, G., Yu, L., Feng, Y., Li, X., Zhang, Z., Wang, Y., Sun, D. and Pradhan, S.
2016Host-Associated Genomic Features of the Novel Uncultured Intracellular Pathogen Ca. Ichthyocystis Revealed by Direct Sequencing of Epitheliocysts.Genome Biol. Evol.Qi, W. et al.
2016Incipient sympatric speciation in Midas cichlid fish from the youngest and one of the smallest crater lakes in Nicaragua due to differential use of the benthic and limnetic habitats?Ecol Evol.Kautt AF, Machado-Schiaffino G, Torres-Dowdall J, Meyer A.
2016Metabolic Incorporation of Azide Functionality into Cellular RNA.ChembiochemNainar, S., Beasley, S., Fazio, M., Kubota, M., Dai, N., Correa, I.R. Jr. and Spitale, R.C.
2016Metagenomic analysis of bloodstream infections in patients with acute leukemia and therapy induced neutropenia.Sci Rep.Gyarmati, P. et al.
2016mRNA capping: biological functions and applications. Nucleic Acids ResRamanathan, A., Robb, G.B. and Chan, S.H.
2016Jmjd2/Kdm4 demethylases are required for expression of Il3ra and survival of acute myeloid leukemia cellsGenes & DevAgger, K. et al.
2016Mapping the sex determination locus in the hāpuku (Polyprion oxygeneios) using ddRAD sequencing.BMC Genomics. Brown JK, Taggart JB, Bekaert M, Wehner S, Palaiokostas C, Setiawan AN, Symonds JE, Penman DJ.
2016The Epigenomic Landscape of Prokaryotes.PLoS Genet.Blow, M.J., Clark, T.A., Daum, C.G., Deutschbauer, A.M., Fomenkov, A., Fries, R., Froula, J., Kang, D.D., Malmstrom, R.R., Morgan, R.D., Posfai, J., Singh, K., Visel, A., Wetmore, K., Zhao, Z., Rubin, E.M., Korlach, J., Pennacchio, L.A. and Roberts, R.J.
2016The Inhibitory Effect of Non-Substrate and Substrate DNA on the Ligation and Self-Adenylylation Reactions Catalyzed by T4 DNA Ligase. PLoS OneBauer, R.J., Evans, T.C. Jr. and Lohman, G.J.
2016The Microbiome of Aseptically Collected Human Breast Tissue in Benign and Malignant DiseaseSci Rep.Hieken, T.J. et al.
2016Structure of Type IIL Restriction-Modification Enzyme MmeI in Complex with DNA Has Implications for Engineering New Specificities.PLoS Biol.Callahan, S.J., Luyten, Y.A., Gupta, Y.K., Wilson, G.G., Roberts, R.J., Morgan, R.D. and Aggarwal, A.K.
2016Taxonomer: an interactive metagenomics analysis portal for universal pathogen detection and host mRNA expression profilingGenome BiologyFlygare, S. et al.
2016The endoplasmic reticulum: structure, function and response to cellular signalingCell Mol Life Sci.Schwarz, D.S., Blower, M.D.
2016Training the Next Generation of Biomedical Investigators in Glycosciences.J. Clin. Invest.Agre, P., Bertozzi, C., Bissell, M., Campbell, K., Cummings, R., Desai, U., Estes, M., Flotte, T., Fogleman, G.,Gage, F., Ginsburg, D., Gordon, J.I., Hart, G., Hascall, V., Kiessling, L., Kornfeld, S., Lowe, J., Magnani, J., Mahal, L.K., Medzhitov, R., Roberts, R., Sackstein, R., Sarkar, R., Schnaar, R., Schwartz, N., Varki, A., Walt, D., Weissman, I.
2016Using glycosidases to remove, trim, or modify glycans on therapeutic proteinsBioProcess InternationalGuthrie, E.P., Magneilli, P.E.
2016Visualization of Periplasmic and Cytoplasmic Proteins with a Self-Labeling Protein Tag.J BacteriolKe, N., Landgraf, D., Paulsson, J. and Berkmen, M.
2016WGS for surveillance of antimicrobial resistance: a pilot study to detect the prevalence and mechanism of resistance to azithromycin in a UK population of non-typhoidal <em>Salmonella</em>.J Antimicrob Chemother. Nair, S. et al.
2016Transcription factor LSF-DNMT1 complex dissociation by FQI1 leads to aberrant DNA methylation and gene expression.OncotargetChin, H.G., Ponnaluri, C., Zhang, G., Esteve, P., Schaus, S.E., Hansen, U. and Pradhan, S.
2016Type II restriction endonucleases - a historical perspective and more.Nucleic Acids ResPingoud, A., Wilson, G.G. and Wende, W.
2016Use of the Shuffle Strains in Production of Proteins.Curr Protoc Protein Sci.Ren, G., Ke, N. and Berkmen, M.
2016Structural basis for human PRDM9 action at recombination hot spotsGenes DevPatel, A., Horton, J.R., Wilson, G.G., Zhang, X. and Cheng, X.
2016Reconstitution of Protein Translation of Mycobacterium Reveals Functional Conservation and Divergence with the Gram-Negative Bacterium Escherichia coli.PLoS One.Srivastava, A., Asahara, H., Zhang, M., Zhang, W., Liu, H., Cui, S., Jin, Q. and Chong, S.
2016Redox pathway sensing bile salts activates virulence gene expression in Vibrio cholerae.Mol Microbiol.Xue, Y., Tue, F., Shi, M., Wu, C.Q., Ren, G., Wang, X., Fang, W., Song, H. and Yang, M.
2016Reminder to deposit DNA sequencesScienceBlaxter, M., Danchin, A., Savakis, B., Fukami-Kobayashi, K., Kurokawa, K., Sugano, S., Roberts, R.J., Salzberg, S.L. and Wu, C.I.
2016RAD-seq data point to a northern origin of the arctic-alpine genus Cassiope (Ericaceae).Mol Phylogenet Evol. Hou Y, Nowak MD, Mirré V, Bjorå CS, Brochmann C, Popp M.
2016RAD-seq derived genome-wide nuclear markers resolve the phylogeny of tunas.Mol Phylogenet Evol.Díaz-Arce N, Arrizabalaga H, Murua H, Irigoien X, Rodríguez-Ezpeleta N.
2016Rapid, Low-Cost Detection of Zika Virus Using Programmable Biomolecular ComponentsCellPardee P, Green A A, Takahashi M K, Braff D, Lambert G, Lee J W, Ferrante T, Ma D, Donghia N, Fan M, Daringer N M, Bosch I, Dudley D M, O’Connor D H, Gehrke H, Collins J J
2016Selective depletion of abundant RNAs to enable transcriptome analysis of low-input and highly degraded human RNA.Curr. Protoc. Mol. Biol.Munafó, D.B., Langhorst, B.W., Chater, C.L., Sumner, C.J., Rodriguez, D.N., Russello, S., Gardner, A.F., Slatko, B.E., Stewart, F.J., Sinicropi, D., Morlan, J., Qu, K., Dimalanta, E.T., Davis, T.B.
2016Simple and Highly Sensitive Molecular Diagnosis of Zika Virus by Lateral Flow Assays.Anal Chem.Lee D, Shin Y, Chung S, Hwang KS, Yoon DS, Lee JH
2016Simple Isothermal Strategy for Multiplexed, Rapid, Sensitive, and Accurate miRNA DetectionACS SensWee E J H, Trau M,
2016Sensitive and specific miRNA detection method using SplintR LigasePublication.Nucleic Acids Res.Jin, J., Vaud, S., Zhelkovsky, A.M., Posfai, J. and McReynolds, L.A.
2016Sensitive Detection of Plasmodium vivax Using a High-Throughput, Colourimetric Loop Mediated Isothermal Amplification (HtLAMP) Platform: A Potential Novel Tool for Malaria Elimination.PLoS Negl Trop DisBritton, S., Cheng, Q., Grigg, M.J., Poole, C.B., Pasay, C., William, T., Fornace, K., Anstey, N.M., Sutherland, C.J., Drakeley, C. and McCarthy, J.S.
2016Sequential formation of two branched intermediates during protein splicing of class three inteinsExtremophilesTori, K. and Perler, F.
2016Comparative Methylome Analysis of the Occasional Ruminant Respiratory Pathogen Bibersteinia trehalosi.PLoS OneAnton, B.P., Harhay, G.P., Smith, T.P., Blom, J. and Roberts, R.J.
2016Comparison of a new visual isothermal nucleic acid amplification test with PCR and skin snip analysis for diagnosis of onchocerciasis in humans.Mol Biochem Parasitol.Alhassan, Aa, Osei-Atweneboana, M.Y., Kyeremeh, K.F., Poole, C.B., Li, Z., Tettevi, E., Tanner, N.A. and Carlow, C.K.
2016Comparison of intraspecific, interspecific and intergeneric chloroplast diversity in Cycads.Sci Rep.Jiang, G.F. et al.
2016Characterization of innate immunity genes in the parasitic nematode Brugia malayiSymbiosisLibro, S., Slatko, B.E. and Foster, J.M.
2016Characterizing Two Inter-specific Bin Maps for the Exploration of the QTLs/Genes that Confer Three Soybean Evolutionary Traits.Front Plant Sci. Wang W, Liu M, Wang Y, Li X, Cheng S, Shu L, Yu Z, Kong J, Zhao T, Gai J.
2016COMBREX-DB: An experiment centered database of protein function: knowledge, predictions and knowledge gaps. Nucl. Acids Res.Chang, Y.-C., Hu, Z., Rachlin, J., Anton, B.P., Kasif, S., Roberts, R.J. and Steffen, M.
2016Complete Genome and Methylome Sequences of Salmonella enterica subsp. enterica Serovar Panama (ATCC 7378) and Salmonella enterica subsp. enterica Serovar Sloterdijk (ATCC 15791).Genome Announc.Yao, K., Muruvanda, T., Roberts, R.J., Payne, J., Allard, M.W. and Hoffmann, M.
2016Complete genome sequence of Brevibacterium linens SMQ-1335.Genome AnnouncementsDe Melo, A., Labrie, S., Dumaresq, J., Roberts, R., Tremblay, D. and Moineau, S.
2016Complete Genome Sequence of Escherichia coli ER1821R, a Laboratory K-12 Derivative Engineered To Be Deficient in All Methylcytosine and Methyladenine Restriction SystemsGenome Announc.Jobling, M.G., Raleigh, E.A. and Frank, D.N.
2016Complete Genome Sequence of NEB 5-alpha, a Derivative of Escherichia coli K-12 DH5 alpha.Genome Announc. Anton, B.P. and Raleigh, E.A.
2016Complete genome and methylome sequences of two SalmonellaGenome AnnouncementsYao, K., Muruvanda, T., Roberts, R.J., Payne, J., Allard, M.W., Hoffmann, M.
2016Complete Genome Sequence and Methylome Analysis of Aeromonas hydrophila Strain YL17, Isolated from a Compost Pile.Genome Announc.Lim, Y.L., Roberts, R.J., Ee, R., Yin, W.F. and Chan, K.G.
2016Complete Genome Sequence of a Strain of Azospirillum thiophilum Isolated from a Sulfide Spring.Genome Announc.Fomenkov, A., Vincze, T., Grabovich, M., Anton, B.P., Dubinina, G., Orlova, M., Belousova, E. and Roberts, R.J.
2016Biosynthesis and Function of Modified Bases in Bacteria and Their Viruses.Chemical ReviewsWeigele, P.W. and Raleigh, E. A.
2016A microbiome DNA enrichment method for next-generation sequencing sample preparationCurr Prot Mol Biol.Yigit, E., Feehery, G.R., Langhorst, B.W., Stewart, F.J., Dimalanta, E.T., Pradhan, S., Slako, B., Gardner, A.F., McFarland, J., Sumner, C., Davis, T.B.
2016A mix-and-read drop-based in vitro two-hybrid method for screening high-affinity peptide binders.Sci RepCui, N., Zhang, H., Schneider, N., Tao, Y., Asahara, H., Sun, Z., Cai, Y., Koehler, S.A., de Greef, T.F., Abbaspourrad, A., Weitz, D.A. and Chong, S.
2016A novel enrichment strategy reveals unprecedented number of novel transcription start sites at single base resolution in a model prokaryote and the gut microbiome.BMC GenomicsEttwiller, L., Buswell, J., Yigit, E. and Schildkraut, I
2016A DsbA-Deficient Periplasm Enables Functional Display of a Protein with Redox-Sensitive Folding on M13 Phage.BiochemistryChen, M., Samuelson, J.C.
2016A Genetic Map for the Only Self-Fertilizing Vertebrate.G3 (Bethesda)Kanamori A, Sugita Y, Yuasa Y, Suzuki T, Kawamura K, Uno Y, Kamimura K, Matsuda Y, Wilson CA, Amores A, Postlethwait JH, Suga K, Sakakura Y.
2016A high-throughput assay for the comprehensive profiling of DNA ligase fidelityNucleic Acids Res.Lohman, G.J., Bauer, R.J., Nichols, N.M., Mazzola, L., Bybee, J., Rivizzigno, D., Cantin, E., Evans, T.C., Jr.
2016Absence of the filarial endosymbiont Wolbachia in seal heartworm (Acanthocheilonema spirocauda) but evidence of ancient lateral gene transfer.J Parasitol.Keroack, C.D., Wurster, J.I., Decker, C.G., Williams, K.M., Slatko, B.E., Foster, J.M. and Williams, S.A.
2016AnnoTALE: bioinformatics tools for identification, annotation, and nomenclature of TALEs from Xanthomonas genomic sequences.Sci Rep.Grau, J., Reschke, M., Erkes, A., Streubel, J., Morgan, R.D., Wilson, G.G., Koebnik, R. and Boch, J.
2016Association of 5-hydroxymethylation and 5-methylation of DNA cytosine with tissue-specific gene expressionEpigenetics.Ponnaluri, V.K., Ehrlich, K.C., Zhang, G., Lacey, M., Johnston, D., Pradhan, S. and Ehrlich, M.
2016Binding of 14-3-3 reader proteins to phosphorylated DNMT1 facilitates aberrant DNA methylation and gene expression.Nucleic Acids Res.Esteve, P.O., Zhang, G., Ponnaluri, V.K., Deepti, K., Chin, H.G., Dai, N., Saqum, C., Black, K., Correa, I.R. Jr., Bedford, M.T., Cheng, X. and Pradhan, S.
2016Adapting capillary gel electrophoresis as a sensitive, high-throughput method to accelerate characterization of nucleic acid metabolic enzymesNucleic Acids Res.Greenough, L., Schermerhorn, K.M., Mazzola, L., Bybee, J., Rivizzigno, D., Cantin, E., Slatko, B.E., Gardner, A.F.
2016Adaptive genetic variation distinguishes Chilean blue mussels (Mytilus chilensis) from different marine environments.Ecol Evol. Araneda C, Larraín MA, Hecht B, Narum S.
2016Advanced uracil DNA glycosylase-supplemented real-time reverse transcription loop-mediated isothermal amplification (UDG-rRT-LAMP) method for universal and specific detection of Tembusu virusScientific ReportsTang Y, Chen H, Diao Y
2016Evaluation of a glycoengineered monoclonal antibody via LC-MS analysis in combination with multiple enzymatic digestionMAbsLiu, R., Giddens, J., McClung, C.M., Magnelli, P.E., Wang, L.X., Guthrie, E.P.
2016Expression and purification of the modification-dependent restriction enzyme BisI and its homologous enzymesSci RepXu, S.Y., Klein, P., Degtyarev, S.K.h. and Roberts, R.J.
2016Folate-/FAD-dependent tRNA methyltransferase from Thermus thermophilus regulates other modifications in tRNA at low temperatures.Genes CellsYamagami, R., Tomikawa, C., Shigi, N., Kazayama, A., Asai, S.I., Takuma, H., Hirata, A., Fourmy, D., Asahara, H., Watanabe, K., Yoshizawa, S. and Hori, H.
2016Emerging pathogens of gilthead seabream: characterisation and genomic analysis of novel intracellular β-proteobacteria.ISME J.Seth-Smith, M.B.P. et al.
2016Epidemiological typing of Neisseria gonorrhoeae and detection of markers associated with antimicrobial resistance directly from urine samples using next generation sequencingSex. Transm. InfectGraham, R.M.A. et al.
2016Erratum to: SHuffle, a novel Escherichia coli protein expression strain capable of correctly folding disulfide bonded proteins in its cytoplasm.Microb Cell Fact. Lobstein, J., Emrich, C.A., Jeans, C., Faulkner, M., Riggs, P. and Berkmen, M.
2016Genetic Divergence between Camellia sinensis and Its Wild Relatives Revealed via Genome-Wide SNPs from RAD Sequencing.PLoS One. Yang H, Wei CL, Liu HW, Wu JL, Li ZG, Zhang L, Jian JB, Li YY, Tai YL, Zhang J, Zhang ZZ, Jiang CJ, Xia T, Wan XC.
2016Global repositioning of transcription start sites in a plant-fermenting bacterium.Nat CommunBoutard, M., Ettwiller, L., Cerisy, T., Alberti, A., Labadie, K., Salanoubat, M., Schildkraut, I. and Tolonen, A.C.
2016Heme acquisition in the parasitic filarial nematode Brugia malayi.FASEB J.Luck AN, Yuan X, Voronin D, Slatko BE, Hamza I, Foster JM.
2016Heme acquisition in the parasitic filarial nematode Brugia malayi.FASEB J. Luck, A.N., Yuan, X., Voronin, D., Slatko, B.E., Hamza, I. and Foster, J.M.
2016Genetically anchored fluorescent probes for subcellular specific imaging of hydrogen sulfide.AnalystChen, J., Zhao, M., Jiang, X., Sizovs, A., Wang, M.C., Provost, C.R., Huang, J. and Wang, J.
2016Genomic study of the Ket: a PaleoEskimo-related ethnic group with significant ancient North Eurasian ancestry.Sci Rep.Flegontov, P. et al.
2016Efficient In Situ Detection of mRNAs using the Chlorella virus DNA ligase for Padlock Probe LigationRNASchneider, N and Meier, M.
2016Construction of High-Density Linkage Maps of Populus deltoides × P. simonii Using Restriction-Site Associated DNA Sequencing.PLoS One. Tong C, Li H, Wang Y, Li X, Ou J, Wang D, Xu H, Ma C, Lang X, Liu G, Zhang B, Shi J.
2016Culture-independent genomic characterisation of Candidatus Chlamydia sanzinia, a novel uncultivated bacterium infecting snakes. BMC Genomics Taylor-Brown, A. et al.
2016De novo SNP discovery and genetic linkage mapping in poplar using restriction site associated DNA and whole-genome sequencing technologies.BMC GenomicsMousavi M, Tong C, Liu F, Tao S, Wu J, Li H, Shi J.
2016Complete Genome Sequence of the Engineered Escherichia coli SHuffle Strains and Their Wild-Type Parents Genome Announc.Anton, B.P., Fomenkov, A., Raleigh, E.A. and Berkmen, M.
2016Comprehensive nucelosome mapping of the human genome in cancer progressionOncotargetDruliner, B.R., Vera, D., Johnson, R., Ruan, X., Apone, L.M., Dimalanta, E.T., Stewart, F.J., Boardman, L., Dennis, J.H.
2016Comprehensive Profiling of Glycosphingolipid Glycans Using a Novel Broad Specificity Endoglycoceramidase in a High-Throughput Workflow.Albrecht, S., Vainauskas, S., Stöckmann, H., McManus, C., Taron, C.H. and Rudd, P.M.
2016Denys-Drash syndrome associated WT1 glutamine 369 mutants have altered sequence-preferences and altered responses to epigenetic modifications.Nucleic Acids Res.Hashimoto, H., Zhang, X., Zheng, Y., Wilson, G.G. and Cheng, X.
2016Development of a universal and simplified ddRAD library preparation approach for SNP discovery and genotyping in angiosperm plants.Plant Methods. Yang GQ, Chen YM, Wang JP, Guo C, Zhao L, Wang XY, Guo Y, Li L, Li DZ, Guo ZH.
2016Distributive processing by the Iron(II)/α-Ketogluterate-dependent catalytic domains of the TET enzymes in consistent with epigenetic roles for oxidized 5-methylcytosine basesJ Am Chem Soc.Tamanaha, E., Guan, S., Marks, K., Saleh, L.
2016DNA recognition by the SwaI restriction endonuclease involves unusual distortion of an 8 base pair A: T-rich target.Nucleic Acids Res. Shen, B.W., Heiter, D.F., Lunnen, K.D., Wilson, G.G. and Stoddard, B.L.
2016Derivative Engineered To Be Deficient in All Methylcytosine and Methyladenine Restriction Systems.Genome Announc.Jobling, M.G., Raleigh, E.A. and Frank, D.N.
2016<a href="http://biorxiv.org/content/early/2016/04/04/047142" target="_blank">Detecting DNA Methylation using the Oxford Nanopore Technologies MinION sequencer</a>bioRxivSimpson, J.T. et al.
2016Development of a RAD-Seq Based DNA Polymorphism Identification Software, AgroMarker Finder, and Its Application in Rice Marker-Assisted Breeding.PLoS One. Fan W, Zong J, Luo Z, Chen M, Zhao X, Zhang D, Qi Y, Yuan Z.
2015Rapid Preparation of Released N-Glycans for HILIC Analysis Using a Labeling Reagent that Facilitates Sensitive Fluorescence and ESI-MS DetectionAnal ChemLauber, M.A., Yu, Y.Q., Brousmiche,D.W., Hua, Z., Koza, S.M., Magnelli, P., Guthrie, E., Taron, C.H. and Fountain, K.J.
2015RAD sequencing and genomic simulations resolve hybrid origins within North American Canis.Bio Lett.Rutledge LY, Devillard S, Boone JQ, Hohenlohe PA, White BN.
2015Production of a Highly Protease-Resistant Fungal α-Galactosidase in Transgenic Maize Seeds for Simplified Feed ProcessingPLoS OneYang W., Zhang Y., Zhou X., Zhang W., Xu X., Chen R., Meng Q., Yuan J., Yang P., Yao B.
2015Proteomic Analysis Reveals Aberrant O-GlcNAcylation of Extracellular Proteins from Breast Cancer Cell SecretionCancer Genomics ProteomicsNetsirisawan P., Chokchaichamnankit D., Srisomsap C., Svasti J., Champattanachai V.
2015Production of bioactive chicken (Gallus gallus) follistatin-type proteins in E. coliAMB ExpressLee S.B., Park S.K., Kim Y.S.
2015Restriction Site-Associated DNA Sequencing (RAD-seq) Reveals an Extraordinary Number of Transitions among Gecko Sex-Determining Systems.Mol Biol Evol. Gamble T, Coryell J, Ezaz T, Lynch J, Scantlebury DP, Zarkower D.
2015Sequence-tagged high-density genetic maps of Zoysia japonica provide insights into genome evolution in Chloridoideae.Plant J.Wang F, Singh R, Genovesi AD, Wai CM, Huang X, Chandra A, Yu Q.
2015 Sequence-specific DNA nicking endonucleasesBiomol conceptsXu, S-Y
2015Restriction Cascade Exponential Amplification (RCEA) assay with an attomolar detection limit: a novel, highly specific, isothermal alternative to qPCRScientific Reports
2015REBASE - A database for DNA restriction and modification: enzymes, genes and genomesNucleic Acids ResRoberts, R.J., Vincze, T., Posfai, J., Macelis, D.
2015Rescue of cells from apoptosis increases DNA repair in UVB exposed cells: implications for the DNA damage responseToxicol. Res.Karbaschi, Mahsa., Macip, Salvador., Mistry, Vilas., Abbas, Hussein H.K., Delinassios, George J., Evans, Mark D., Young, Antony R., Cooke, Marcus S.
2015Recognition and cleavage of 5-methylcytosine DNA by bacterial SRA-HNH proteinsNucleic Acids Res.Han, T., Yamada-Mabuchi, M., Zhao, G., Li, L., Liu, G., Oui, H-Y, Deng, Z., Zheng, Y. and He, X.
2015Microscale purification of antigen-specific antibodiesJ Immunol MethodsBrown EP., Normandin E., Osei-Owusu NY., Mahan AE., Chan YN., Lai JI., Vaccari M., Rao M., Franchini G., Alter G., Ackerman ME.
2015microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach.Parasites & VectorsMacchiaroli, N. et al.
2015Multivalent site-specific phage modification enhances the binding affinity of receptor ligandsBioconjug ChemBeech, J., Saleh, L., Frentzel, J., Figler, H., Correa, I.R. Jr., Baker, B., Ramspacher, C., Marshall, M., Dasa, S., Linden, J., Noren, C.J. and Kelly, K.A.
2015Multi-Dimensional Measurement of Antibody-Mediated Heterosubtypic Immunity to Influenza.PLoS OneWang J., Hilchey SP., Hyrien O., Huertas N., Perry S., Ramanunninair M., Bucher D., Zand MS.
2015Mammalian DNA (cytosine-5) methyltransferase mechanisms and RNA-mediated inhibition for future therapies.Epigenetics Diagnostic TherapyZhang, G., Esteve, P.O., Chin, H.G. and Pradhan, S
2015Leaf margin phenotype-specific restriction-site-associated DNA-derived markers for pineapple (Ananas comosus L.).Breed Sci. Urasaki N, Goeku S, Kaneshima R, Takamine T, Tarora K, Takeuchi M, Moromizato C, Yonamine K, Hosaka F, Terakami S, Matsumura H, Yamamoto T, Shoda M.
2015Label-free single-cell protein quantification using a drop-based mix-and-read system.Sci. Rep.Abbaspourrad A, Zhang H, Tao Y, Cui N, Asahara H, Zhou Y, Yue D, Koehler SA, Ung LW, Heyman J, Ren Y, Ziblat R, Chong S, Weitz DA.
2015Mammalian DNA (cytosine-5) methyltransferase mechanisms and RNA-mediated inhibition for future therapies.Epigenetics Diagnostic TherapyZhang, G., Esteve, P.O., Chin, H.G. and Pradhan, S
2015Linkage disequilibrium network analysis (LDna) gives a global view of chromosomal inversions, local adaptation and geographic structure.Mol Ecol Resour. Kemppainen P, Knight CG, Sarma DK, Hlaing T, Prakash A, Maung Maung YN, Somboon P, Mahanta J, Walton C.
2015Population genomic evidence for adaptive differentiation in Baltic Sea three-spined sticklebacks.BMCBiol.Guo B, DeFaveri J, Sotelo G, Nair A, Merilä J.
2015Physiologic Stresses Reveal a Salmonella Persister State and TA Family Toxins Modulate Tolerance to These StressesPLoS OneSilva-Herzog E, McDonald EM, Crooks AL, Detweiler CS.
2015Pre-Steady-State Kinetic Analysis of a Family D DNA Polymerase from Thermococcus sp. 9°N Reveals Mechanisms for Archaeal Genomic Replication and MaintenanceJ Biol ChemSchermerhorn KM, Gardner AF
2015Pre-steady-state Kinetic Analysis of a Family D DNA Polymerase from Thermococcus sp. 9°N Reveals Mechanisms for Archaeal Genomic Replication and MaintenanceJ Biol ChemSchermerhorn KM, Gardner AF.
2015Phylogeny and differentiation of reptilian and amphibian ranaviruses detected in europePLoS OneStöhr AC, López-Bueno A, Blahak S, Caeiro MF, Rosa GM, Alves de Matos AP, Martel A, Alejo A, Marschang RE
2015Novel recA-Independent Horizontal Gene Transfer in Escherichia coli K-12PLoSKingston AW, Roussel-Rossin C, Dupont C, Raleigh EA.
2015Na, K-ATPase α3 is a death target of Alzheimer patient amyloid-β assembly.Proc Natl Acad Sci U S AOhnishi T., Yanazawa M., Sasahara T., Kitamura Y., Hiroaki H., Fukazawa Y., Kii I., Nishiyama T., Kakita A., Takeda H., Takeuchi A., Arai Y., Ito A., Komura H., Hirao H., Satomura K., Inoue M., Muramatsu S., Matsui K., Tada M., Sato M., Saijo E., Shigemitsu Y., Sakai S., Umetsu Y., Goda N., Takino N., Takahashi H., Hagiwara M., Sawasaki T., Iwasaki G., Nakamura Y., Nabeshima Y., Teplow D.B., Hoshi M.
2015Overview of Target Enrichment Strategies.current Protocols in Molecular BiologyKozarewa, I., Armisen, J., Gardner, A.F., Slatko, B.E. and Hendrickson, C.L.
2015Novel recA-Independent Horizontal Gene Transfer in Escherichia coli K-12PloS OneKingston, A. W., Roussel-Rossin, C., Dupont, C., Raleigh, E. A.
2015Serum N-Glycans: A New Diagnostic Biomarker for Light Chain Multiple MyelomaPLoS OneChen J., Fang M., Zhao YP., Yi CH., Ji J., Cheng C., Wang MM., Gu X., Sun QS., Chen XL., Gao CF.
2015Tissue-specific epigenetics in gene neighborhoods: myogenic transcription factor genesHum Mol GenetChandra, S., Terragni, J., Zhang, G., Pradhan, S., Haushka, S., Johnston, D., Baribault, C., Lacey, M. and Ehrlich, M.
2015Thousands of RAD-seq Loci Fully Resolve the Phylogeny of the Highly Disjunct Arctic-Alpine Genus Diapensia (Diapensiaceae).PLoS One. Hou Y, Nowak MD, Mirré V, Bjorå CS, Brochmann C, Popp M.
2015TonEBP modulates the protective effect of taurine in ischemia-induced cytotoxicity in cardiomyocytesCell Death Dis.Yang YJ, Han YY, Chen K, Zhang Y, Liu X, Li S, Wang KQ, Ge JB, Liu W, Zuo J.
2015The use of museum specimens with high-throughput DNA sequen.J Hum Evol. Burrell AS, Disotell TR, Bergey CM.
2015The ribosome quality control pathway can access nascent polypeptides stalled at the Sec61 transloconMol Biol CellMalsburg K., Shao S., Hegde RS.
2015The mRNA decay factor PAT1 functions in a pathway including MAP kinase 4 and immune receptor SUMM2Roux, M.E., Rasmussen, M.W., Palma, K., Lolle, S., Regue, A.M., Bethke, G., Glazebrook, J., Zhang, W., Sieburth, L., Larsen, M.R., Mundy, J., Petersen, M.
2015The roles of family B and d DNA polymerases in thermococcus species 9 degrees n okazaki fragment maturationJ Biol Chem.Greenough, L., Kelman, Z. and Gardner, A.F.
2015VirB6 and VirB10 from the Brucella type IV secretion system interact via the N-terminal periplasmic domain of VirB6FEBS LettGiraldo A.MV., Mary C., Sivanesan D., Baron C.
2015Using Next Generation RAD Sequencing to Isolate Multispecies Microsatellites for Pilosocereus (Cactaceae).PLoS One. Bonatelli IA, Carstens BC, Moraes EM.
2015Visual detection of isothermal nucleic acid amplification using pH-sensitive dyes.BiotechniquesTanner NA, Zhang Y, Evans TC Jr
2015Visual detection of isothermal nucleic acid amplification using pH-sensitive dyesBiotechniquesTanner, N.A., Zhang, Y. and Evans, T.C., Jr.
2015Upregulation of glycans containing 3' fucose in a subset of pancreatic cancers uncovered using fusion-tagged lectins.J Proteome ResSingh S., Kuntal P., Yadav J., Tang H., Partyka K., Kletter D., Hsueh P., Ensink E., Kc B., Hostetter G., Xu E.H., Bern M., Smith D.F., Mehta A.S., Brand R., Melcher K., Haab B.B.
2015Transition in sexual system and sex chromosome evolution in the tadpole shrimp Triops cancriformis.Heredity (Edinb). Mathers TC, Hammond RL, Jenner RA, Hänfling B, Atkins J, Gómez A.
2015Transcriptional Analysis of Deinococcus radiodurans Reveals Novel Small RNAs That Are Differentially Expressed under Ionizing Radiation.Appl. Environ. Microbiol.Tsai, H.C. et al
2015Two new phragmotic ant species from Africa: morphology and next-generation sequencing solve a caste association problem in the genus Carebara Westwood.Zookeys.Fischer G, Azorsa F, Garcia FH, Mikheyev AS, Economo EP.
2015Trans-Pacific RAD-Seq population genomics confirms introgressive hybridization in Eastern Pacific Pocillopora corals.Mol Phylogenet Evol. Combosch DJ, Vollmer SV.
2015Structural and biochemical studies of a moderately thermophilic exonuclease I from Methylocaldum szegediensePLoS OneFei, L., Tian, S., Moysey, R., Misca, M., Barker, J.J., Smith, M.A., McEwan, P.A., Pilka, E.S., Crawley, L., Evans, T. and Sun, D.
2015Structure of Naegleria Tet-like dioxygenase (NgTet1) in complexes with a reaction intermediate 5-hydroxymethylcytosine DNA.Nucleic Acids ResHashimoto H, Pais JE, Dai N, Corrêa IR Jr, Zhang X, Zheng Y, Cheng X.
2015Structural basis of asymmetric DNA methylation and ATP-triggered long-range diffusion by EcoP15INature CommunicationsGupta, Y.K., Chan, S.H., Xu, S.Y., and Aggarwal, A.K.
2015Specificity of the ModAll, ModA12 and ModD1 epigenetic regulator N6-adenine DNA methyltransferases of Neisseria MeningitidisNucleic Acids ResSeib, K.L., Jen, F.E., Tan, A., Scott, A.L., Kumar, R., Power, P.M., Chen, L.T., Wu, H.J., Wang, A.H., Hill, D.M., Luyten, Y.A., Morgan, R.D., Roberts, R.J., Maiden, M.C., Boitano, M., Clark, T.A., Korlach, J., Rao, D.N. and Jennings, M.P.
2015Single-molecule visualization of a formin-capping protein 'decision complex' at the actin filament barbed endNat Commun.Bombardier, J.P., Eskin, J.A., Jaiswal, R., Correa, I.R., Jr., Xu, M.Q., Goode, B.L. and Gelles, J.
2015Simultaneous generation of many RNA-seq libraries in a single reactionNat MethodsShishkin AA, Giannoukos G, Kucukural A, Ciulla D, Busby M, Surka C, Chen J, Bhattacharyya RP, Rudy RF, Patel MM, Novod N, Hung DT, Gnirke A, Garber M, Guttman M, Livny J
2015SNP-based genetic linkage map of tobacco (Nicotiana tabacum L.) using next-generation RAD sequencing.J Biol Res (Thessalon). Xiao B, Tan Y, Long N, Chen X, Tong Z, Dong Y, Li Y.
2015Small RNA-mediated DNA (cytosine-5) methyltransferase 1 inhibition leads to aberrant DNA methylationNucleic Acids ResZhang, G., Esteve, P.O., Chin, H.G., Terragni, J., Dai, N., Correa, I.R. Jr. and Pradhan, S.
2015The diversity of Bet v 1-specific IgG4 antibodies remains mostly constant during the course of birch pollen immunotherapyJ Allergy Clin ImmunolSubbarayal B., Schiller D., Möbs C., Pfützner W., Jahn-Schmid B., Gepp B., Breiteneder H., Vieths S., Bohle B.
2015The complete methylome of Helicobacter pylori UM032BMC GenomicsLee, W.C., Anton, B.P., Wang, S., Baybayan, P., Singh, S., Ashby, M., Chua, E.G., Tay, C.Y., Thirriot, f., Loke, M.F., Goh, K.L., Marshall, B.J., Robert, R.J. and Vadivelu, J.
2015The foles of family B and d DNA polymerases in thermococcus species 9 degrees n okazaki fragment maturationJ Biol ChemGreenough, L., Kelman, Z. and Gardner, A.F.
2015The evolutionary history of the embiotocid surfperch radiation based on genome-wide RAD sequence data.Mol Phylogenet Evol. Longo G, Bernardi G.
2015Terminal Mannose Residues in Seminal Plasma Glycoproteins of Infertile Men Compared to Fertile DonorsInt J Mol SciBeata O., Jarząb A., Kratz E., Zimmer M., Gamian A., Ferens-Sieczkowska M.
2015Ten simple rules to win a nobel prizeRoberts, R.J.
2015Targeted Glycoengineering Extends the Protein N-glycosylation Pathway in the Silkworm Silk GlandInsect Biochem Mol BiolAsazuma HM., Sohn BH., Kim Y.S., Kuo CW., Khoo KH., Kucharski CA., Fraser MJ., Jarvis DL.
2015Comparative Population Genomics of African Montane Forest Mammals Support Population Persistence across a Climatic Gradient and Quaternary Climatic Cycles.PLoS One. Demos TC, Kerbis Peterhans JC, Joseph TA, Robinson JD, Agwanda B, Hickerson MJ.
2015Comparative Analysis of the Glycosylation Profiles of Membrane-Anchored HIV-1 Envelope Glycoprotein Trimers and Soluble gp140.J VirolGo E.P., Herschhorn A., Gu C., Castillo-Menendez L., Zhang S., Mao Y., Chen H., Ding H., Wakefield J.K., Hua D., Liao H.X., Kappes J.C., Sodroski J., Desaire H.
2015Complete Genome Sequence Analysis of Bacillus Subtilis T30Genome Announc.Xu, S-Y., Boitano, M., Clark, T.A., Vincze, T., Fomenkov, A., Kumar, S., Too, PH-M., Gonchar, D., Degtyarev, S.K. and Roberts, R.J.
2015Cloning Should Be Simple: Escherichia coli DH5α-Mediated Assembly of Multiple DNA Fragments with Short End HomologiesPLoS OneKostylev M., Otwell A.E., Richardson R., Suzuki Y.
2015CD24 tracks divergent pluripotent states in mouse and human cells.Nat CommunShakiba N., White C.A., Lipsitz Y.Y., Yachie-Kinoshita A., Tonge P.D., Hussein S.M.I., Puri M.C., Elbaz J., Morrissey-Scoot J., Li M., Munoz J., Benevento M., Rogers I.M., Hanna J.H., Heck A.J.R., Wollscheid B., Nagy A., Zandstra P.W.
2015Caspr2 autoantibodies target multiple epitopes.Neurol Neuroimmunol NeuroinflammOlsen AL., Lai Y., Dalmau J., Scherer SS., Lancaster E.
2015Cell- and Protein-Directed Glycosylation of Native Cleaved HIV-1 Envelope.J VirolPritchard L.K., Harvey D.J., Bonomelli C., Crispin M., Doores K.J.
2015Complete Genome Sequence of the freshwater colorless sulfur bacterium Beggiatoa leptomitiformis neotype strain D-402TGenome Announc.Fomenkov, A., Vincze, T., Grabovich, M.Y., Dubinina, G., Orlova, M., Belousova, E., Roberts, R.J.
2015Complete Genome Sequence of Streptomyces sp. strain CCM_MD2014, isolated from topsoil in Woods Hole, MassachusettsGenome Announc.Mariita, R.M., Bhatnagar, S., Hanselmann, K., Hossain, M.J., Korlach, J., Boitano, M., Roberts, R.J., Liles, M.R., Moss, A.G., Leadbetter, J.R., Newman, D.K., Dawson, S.C.
2015Considerations and protocols for the synthesis of custom protein labeling probesMetholds Mol BiolCorrea, I.R. Jr.
2015Compounds targeting disulfide bond forming enzyme DsbB of Gram-negative bacteriaNature Chemical Biology Landeta, C., Blazyk, J.L., Hatahet, F., Meehan, B.M., Eser, M., Myrick, A., Bronstain, L., Minami, S., Arnold, H., Ke, N., Rubin, E.J., Furie, B.C., Furie, B., Beckwith, J., Dutton, R., Boyd, D.
2015Complete Genome Sequence of Salmonella enterica subsp. enterica Serovar Agona 460004 2-1, Associated with a Multistate Outbreak in the United StatesGenome AnnouncHoffmann M, Payne J, Roberts RJ, Allard MW, Brown EW, Pettengill JB
2015Complete Genome Sequence of Curtobacterium sp. strain MR_MD2014, isolated from topsoil in Woods Hole, MassachusettsGenome Announc.Mariita, R.M., Bhatnagar, S., Hanselmann, K., Hossain, M.J., Korlach, J., Boitano, M., Roberts, R.J., Liles, M.R., Moss, A.G., Leadbetter, J.R., Newman, D.K., Dawson, S.C.
2015Complete genome sequence and methylome analysis of bacillus strain x1Genome AnnouncFomenkov, A., Lunnen, K.D., Zhu, Z., Anton, B.P., Wilson, G.G., Vincze, T. and Roberts, R.J.
2015Complete Genome Sequence of ER2796, a DNA Methyltransferase-Deficient Strain of Escherichia coli K-12PLoS OneAnton, B.P., Mongodin, E.F., Agrawal, S., Fomenkov, A., Byrd, D.R., Roberts, R.J. and Raleigh, E.A.
2015Complete Genome Sequence of Enteroinvasive Escherichia coli O96:H19 Associated with a Severe Foodborne OutbreakGenome AnnouncPettengill EA, Hoffmann M, Binet R, Roberts RJ, Payne J, Allard M, Michelacci V, Minelli F, Morabito S.
2015A Sensitive Approach to Map Genome-wide 5-Hydroxymethylcytosine and 5-Formylcytosine at Single-Base ResolutionMol. CellSun, Z., Dai, N., Borgaro, J.G., Quimby, A., Sun, D., Correa, I.R., Jr., Zheng, Y., Zhu, Z. and Guan, S.
2015A Proline-Rich Domain in the Genotype 4 Hepatitis E Virus ORF3 PLoS OneWang H., Fangxiao J., Liang H., Gu H.
2015A Structural and Functional Comparison Between Infectious and Non-Infectious Autocatalytic Recombinant PrP ConformersPLoS PathogNoble GP., Wang DW., Walsh DJ., Barone JR., Miller MB., Nishina KA., Li S., Supattapone S.
2015A New Approach to Produce HIV-1 Envelope Trimers: BOTH CLEAVAGE AND PROPER GLYCOSYLATION ARE ESSENTIAL TO GENERATE AUTHENTIC TRIMERS.J Biol ChemAlSalmi W., Mahalingam M., Ananthaswamy N., Hamlin C., Flores D., Gao G., Rao V.B.
2015A high-throughput assay for the comprehensive profiling of DNA ligase fidelityNucleic Acids ResLohman GJ, Bauer RJ, Nichols NM, Mazzola L, Bybee J, Rivizzigno D, Cantin E, Evans TC Jr.
2015A database for DNA restriction and modification: enzymes, genes and genomes. Nucleic Acids ResearchRoberts, R.J., Vincze, T., Posfai, J., Macelis, D.
2015A lipid switch unlocks Parkinson's disease-associated ATP13A2Proc Natl Acad Sci U S AHolemans T., Sørensen DM., Veen S., Martin S., Hermans D., Kemmer GC., Haute C., Baekelandt V., Pomorski TG., Agostinis P., Wuytack F., Palmgren M., Eggermont J., Vangheluwe P.
2015Biochemical characterization of a Naegleria TET-like oxygenase and its application in single molecule sequencing of 5-methylcytosineProc Natl Acad Sci USAPais, J.E., Dai, N., Tamanaha, E., Vaisvila, R., Fomenkov, A.I., Bitinaite, J., Sun, Z., Guan, S., Correa, I.R. Jr., Noren, C.J., Cheng, X., Roberts, R.J., Zheng, Y. and Saleh, L.
2015An IL-27/NFIL3 signalling axis drives Tim-3 and IL-10 expression and T-cell dysfunctionNat Commun Zhu, C., Sakuishi, K., Xiao, S., Sun, Z., Zaghouani, S., Gu, G., Wang, C., Tan, D.J., Wu, C., Rangachari, M., Pertel, T., Jin, H.T., Ahmed, R., Anderson, A.C., Kuchroo, V.K.
2015Adapting capillary gel electrophoresis as a senisitive, high-throughput method to accelerate characterization of nucleic acid metabolic enzymesNucleic Acids ResGreenough, L., Schermerhorn K.M., Mazzola, L., Bybee, J., Rivizzigno, D., Cantin, E., Slatko, B.E., Gardner, A.F.
2015Contrasting genetic structure between mitochondrial and nuclear markers in the dengue fever mosquito from Rio de Janeiro: implications for vector control.Evol Appl. Rašić G, Schama R, Powell R, Maciel-de Freitas R, Endersby-Harshman NM, Filipović I, Sylvestre G, Máspero RC, Hoffmann AA.
2015Glycation of vitronectin inhibits VEGF-induced angiogenesis by uncoupling VEGF receptor-2-αvβ3 integrin cross-talkCell Death DisWang L., Zhang X., Pang N., Xiao L., Li Y., Chen N., Ren M., Deng X., Wu J.
2015Genome-Wide Methylation Patterns in Salmonella enterica Subsp. enterica SerovarsPLoS OnePirone-Davies, C., Hoffmann, M., Roberts, R.J., Muruvanda, T., Timme, R.E., Strain, E., Luo, Y., Payne, J., Luong, K., Song, Y., Tsai, Y.C., Boitano, M., Clark, T.A., Korlach, J., Evans, P.S., Allard, M.W.
2015High-Density Genetic Mapping with Interspecific Hybrids of Two Sea Urchins, Strongylocentrotus nudus and S. intermedius, by RAD Sequencing.PLoS One. Zhou Z, Liu S, Dong Y, Gao S, Chen Z, Jiang J, Yang A, Sun H, Guan X, Jiang B, Wang B.
2015Genome Filtering for New DNA Biomarkers of Loa loa Infection Suitable for Loop-MediatedPLoS OnePoole CB, Ettwiller L, Tanner NA, Evans TC Jr., Wanji S,Carlow CK
2015Functional analysis of microRNA activity in Brugia malayiInt J ParasitolLiu, C., Voronin, D., Poole, C.B., Bachu, S., Rogers, M.B., Jin, J., Ghedin, E., Lustigman, S., McReynolds, L.A. and Unnasch, T.R.
2015Genetically encoded fragment-based discovery of glycopeptide ligands for carbohydrate-binding proteinsJ Am Chem SocNg, S., Lin, E., Kitov, P.I., Tjhung, K.F., Gerlits, O.O., Deng, L., Kasper, B., Sood, A., Paschal, B.M., Zhang, P., Ling, C.C., Klassen, J.S., Noren, C.J., Mahal, L.K., Woods, R.J., Coates, L. and Derda, R.
2015Involvement of the heterodimeric interface region of the nucleotide binding domain-2 (NBD2) in the CFTR quaternary structure and membrane stabilityBiochim Biophys ActaJulien M., Chauvet S., Scheckenbach KE., Alfaidy N., Chanson M., Benharouga M.
2015Insulin-like factor regulates neural induction through an IGF1 receptor-independent mechanism.Sci RepHaramoto Y., Takahashi S., Oshima T., Onuma Y., Ito Y., Asashima M.
2015Islet Endothelial Cells Induce Glycosylation and Increase Cell-surface Expression of Integrin β1 in β CellsJ Biol ChemSpelios MG., Olsen JA., Kenna LA., Akirav EM.
2015Identification of single nucleotide polymorphism markers associated with bacterial cold water disease resistance and spleen size in rainbow trout.Front Genet. Liu S, Vallejo RL, Palti Y, Gao G, Marancik DP, Hernandez AG, Wiens GD.
2015Highly efficient CRISPR/Cas9-mediated TAR cloning of genes and chromosomal loci from complex genomes in yeastNucleic Acids ResLee, NC., Larionov, V., Kouprina, N.
2015High-density interspecific genetic maps of kiwifruit and the identification of sex-specific markers.DNA Res. Zhang Q, Liu C, Liu Y, VanBuren R, Yao X, Zhong C, Huang H.
2015Identification of a Conserved Linear B-Cell Epitope of Streptococcus dysgalactiae GapC Protein by Screening Phage-Displayed Random Peptide LibraryPLoS OneZhang L., Zhang H., Fan Z., Zhou X., Yu L., Sun H., Wu Z., Yu Y., Song B., Ma J., Tong C., Wang X., Zhu Z., Cui Y.
2015Human sialic acid acetyl esterase: Towards a better understanding of a puzzling enzyme.GlycobiologyOrizio F., Damiati E., Giacopuzzi E., Benaglia G., Pianta S., Schauer R., Schwartz-Albiez R., Borsani G., Bresciani R., Monti E.
2015Differential connectivity of splicing activators and repressors to the human spliceosomeGenome Biol.Akerman, M., Fregoso, Ol., Das, S., Ruse, C., Jensen, M.A., Pappin, D.J., Zhang, M.Q., Krainer, A.R.
2015DNA polymerases in biotechnologyFront Microbiol.Gardner, A.F. and Kelman, Z.
2015Developmental exposure to 2,3,7,8-tetrachlorodibenzo-p-dioxin alters DNA methyltransferase (dnmt) expression in zebrafish (Danio rerio)Toxicol Appl PharmacolAluru N, Kuo E, Helfrich LW, Karchner SI, Linney EA, Pais JE, Franks DG
2015Converting a Sulfenic Acid Reductase into a Disulfide Bond IsomeraseAntioxid Redox Signal.Chatelle C, Kraemer S, Ren G, Chmura H, Marechal N, Boyd D, Roggemans C, Ke N, Riggs P, Bardwell J, Berkmen M.
2015Evolutionary and biogeographical patterns of barnacles from deep-sea hydrothermal vents.Mol Ecol.Herrera S, Watanabe H, Shank TM.
2015Evolution of stickleback in 50 years on earthquake-uplifted islands.Proc Natl Acad Sci U S ALescak EA, Bassham SL, Catchen J, Gelmond O, Sherbick ML, von Hippel FA, Cresko WA.
2015Expression and purification of single-chain Type IV restriction enzyme Eco94GmrSD and determination of it substrate preferenceScientific ReportsHe, X., Hull, V., Thomas, J.A., Fu, X., Gidwani, S., Gupta, Y.K., Black, L.W. and Xu, S-Y.
2015Expanding the MDx toolbox for filarial diagnosis and surveillanceTrends Parasitol.Alhassan, A., Li, Z., Poole, C.B. and Carlow, C.K.S.
2015Evaluation of a glycoengineered monoclonal antibody via LC-MS analysis in combination with multiple enzymatic digestionMAbsLiu R, Giddens J, McClung CM, Magnelli PE, Wang LX, Guthrie EP.
2015Efficient expression of full-length antibodies in the cytoplasm of engineered bacteriaNature Communications Robinson, M.-P., Ke, N., Lobstein, J., Peterson, C., Szkodny, A., Mansell, T.J., Tuckey, C., Riggs, P.D., Colussi, P.A., Noren, C.J., Taron, C.H., Delisa, M.P., Berkmen, M.
2015Efficient expression of full-length antibodies in the cytoplasm of engineered bacteriaNat Commun.Robinson MP, Ke N, Lobstein J, Peterson C, Szkodny A, Mansell TJ, Tuckey C, Riggs PD, Colussi PA, Noren CJ, Taron CH, DeLisa MP, Berkmen M.
2015Environmental marine pathogen isolation using mesocosm culture of sharpsnout seabream: striking genomic and morphological features of novel Endozoicomonas sp.Sci Rep.Katharios, P. et al.
2015Enhanced production of secretory glycoprotein VSTM1-v2 with mouse IgGκ signal peptide in optimized HEK293F transient transfectionJ Biosci BioengLiu H., Zou X., Li T., Wang X., Yuan W., Chen Y., Han W.
2014Production of Disulfide-Bonded Proteins in Escherichia coliCurr Protoc Mol BiolKe N, Berkmen M
2014Protein splicing: how inteins escape from precursor proteinsJ Biol ChemMills KV, Johnson MA, Perler FB
2014Protein-protein interactions leading to the recruitment of the host DNA sliding clamp by the hyperthermophilic archaeal virus SIRV2J VirolGardner AF, Bell SD, White MF, Prangishvili D, Krupovic M
2014Polynucleotide 3'-terminal phosphate modifications by RNA and DNA ligasesJournal of Biological ChemistryAlexander M. Zhelkovsky and Larry A. McReynolds
2014Probing homodimer formation of epidermal growth factor receptor by selective crosslinkingEur J Med ChemSun X, Dusserre-Bresson F, Baker B, Zhang A, Xu P, Fibbe C, Noren CJ, Corrêa IR Jr, Xu MQ
2014Sequencing of captive target transcripts identifies the network of regulated genes and functions of primate-specific miR-522Cell RepTan SM, Kirchner R, Jin J, Hofmann O, McReynolds L, Hide W, Lieberman J
2014Protein synthesis using a reconstituted cell-free systemCurr Protoc Mol BiolTuckey C, Asahara H, Zhou Y, Chong S
2014RNA-RNA Interactions Enable Specific Targeting of Noncoding RNAs to Nascent Pre-mRNAs and Chromatin SitesCellJesse M. Engreitz, Klara Sirokman, Patrick McDonel, Alexander A. Shishkin, Christine Surka, Pamela Russell, Sharon R. Grossman, Amy Y. Chow, Mitchell Guttman, and Eric S. Lander
2014PCR amplification of a triple-repeat genetic target directly from whole blood in 15 minutes as a proof-of-principle PCR study for direct sample analysis for a clinically relevant targetBMC Med GenetConnelly CM1, Porter LR2, TerMaat JR
2014Mediated enrichment of siRNAsMethods in Molecular BiologyJin J., McReynolds L.A. and Gullerova M.
2014MBD4 cooperates with DNMT1 to mediate methyl-DNA repression and protects mammalian cells from oxidative stressEpigeneticsLaget S, Miotto B, Chin HG, Estève PO, Roberts RJ, Pradhan S, Defossez PA
2014Modification-dependent restriction endonuclease, MspJI, flips 5-methylcytosine out of the DNA helixNucleic Acids ResearchHorton, J.R., Wang, H., Mabuchi, M.Y., Zhang, X., Roberts, R.J., Zheng, Y., Wilson, G.G., Cheng, X
2014Methyllysine reader plant homeodomain (PHD) finger protein 20-like 1 (PHF20L1) antagonizes DNA (cytosine-5) methyltransferase 1 (DNMT1) proteasomal degradationJ Biol ChemEstève PO, Terragni J, Deepti K, Chin HG, Dai N, Espejo A, Corrêa IR Jr, Bedford MT, Pradhan S
2014Ordering of mutations in preinvasive disease stages of esophageal carcinogenesisNat GenetWeaver JM, Ross-Innes CS, Shannon N, Lynch AG, Forshew T, Barbera M, Murtaza M, Ong CA, Lao-Sirieix P, Dunning MJ, Smith L, Smith ML, Anderson CL, Carvalho B, O'Donovan M, Underwood TJ, May AP, Grehan N, Hardwick R, Davies J, Oloumi A, Aparicio S, Caldas C, Eldridge MD, Edwards PA, Rosenfeld N, Tavaré S, Fitzgerald RC; OCCAMS Consortium
2014Objective: biochemical functionFront GenetAnton BP, Kasif S, Roberts RJ, Steffen M
2014p19-mediated enrichment and detection of siRNAsMethods Mol BiolJin J, McReynolds LA, Gullerova M
2014Overview of cell-free protein synthesis: historic landmarks, commercial systems, and expanding applicationsCurr Protoc Mol BiolChong S
2014Notch signaling genes: myogenic DNA hypomethylation and 5-hydroxymethylcytosineEpigeneticsTerragni, J., Zhang, G., Sun, Z., Pradhan, S., Song, L., Crawford, G.E., Lacey, M., Ehrlich, M.
2014SpeedyGenes: an improved gene synthesis method for the efficient production of error-corrected, synthetic protein libraries for directed evolutionProtein Eng Des SelCurrin A, Swainston N, Day PJ, Kell DB
2014Trypanosome MKT1 and the RNA-binding protein ZC3H11: interactions and potential roles in post-transcriptional regulatory networksNucleic Acids ResSingh A, Minia I, Droll D, Fadda A, Clayton C, Erben E
2014Transient accumulation of 5-carboxylcytosine indicates involvement of active demethylation in lineage specification of neural stem cellsCell RepWheldon LM, Abakir A, Ferjentsik Z, Dudnakova T, Strohbuecker S, Christie D, Dai N, Guan S, Foster JM, Corrêa IR Jr, Loose M, Dixon JE, Sottile V, Johnson AD, Ruzov A
2014Type I restriction enzymes and their relativesNucleic Acids ResearchWil A. M. Loenen, David T. F. Dryden, Elisabeth A. Raleigh, Geoffrey G. Wilson
2014Time-resolved fluorescence of 2-aminopurine in DNA duplexes in the presence of the EcoP15I Type III restriction-modification enzymeBiochem Biophys Res CommunMa L, Wu X, Wilson GG, Jones AC, Dryden DT
2014Traceless splicing enabled by substrate induced activation of the Nostoc punctiforme Npu DnaE intein after mutation of a catalytic cystein to serineJ Mol Biol.Cheriyan, M., Chan, S-H., Perler, F.
2014Whole-genome haplotyping using long reads and statistical methods.Nature BiotechnologyKuleshov, K. et al.
2014Wolbachia endosymbionts and human disease controlMol. Biochem. Parasitol.Slatko, B. E., Luck, A. N., Dobson, S. L. and Foster, J. M.
2014Wilms tumor protein recognizes 5-carboxylcytosine within a specific DNA sequenceGenes DevHashimoto H, Olanrewaju YO, Zheng Y, Wilson GG, Zhang X, Cheng X
2014Type I restriction enzymes and their relativesNucleic Acids ResLoenen WA, Dryden DT, Raleigh EA, Wilson GG
2014Type II restriction endonucleases-a historical perspective and moreNucleic Acids ResPingoud A, Wilson GG, Wende W
2014Structure of 5-hydroxymethylcytosine-specific restriction enzyme AbaSI in complex with DNANucleic Acids ResHorton JR, Borgaro JG, Griggs RM, Quimby A, Guan S, Zhang X, Wilson GG, Zheng Y, Zhu Z, Cheng X
2014Structure and mutagenesis of the DNA modification-dependent restriction endonuclease AspBHISci RepHorton JR, Nugent RL, Li A, Mabuchi MY, Fomenkov A, Cohen-Karni D, Griggs RM, Zhang X, Wilson GG, Zheng Y, Xu SY, Cheng X
2014Structure of the Trehalose-6-phosphate Phosphatase from Brugia malayi Reveals Key Design Principles for Anthelmintic DrugsPLoS PathogFarelli JD, Galvin BD, Li Z, Liu C, Aono M, Garland M, Hallett OE, Causey TB, Ali-Reynolds A, Saltzberg DJ, Carlow CK, Dunaway-Mariano D, Allen KN
2014Structure of a Naegleria Tet-like dioxygenase in complex with 5-methylcytosine DNANatureHashimoto H, Pais JE, Zhang X, Saleh L, Fu ZQ, Dai N, Corrêa IR Jr, Zheng Y, Cheng X
2014Stable cell surface expression of GPI-anchored proteins, but not intracellular transport, depends on their fatty acid structureTrafficJanesh, N. Correa, I.R., Jr. and Watanabe, R.
2014Spontaneous in vitro senescence of glioma cells confirmed by an antibody against IDH1R132HAnticancer ResStoczynska-Fidelus E, Och W, Rieske P, Bienkowski M, Banaszczyk M, Winiecka-Klimek M, Zieba J, Janik K, Rosiak K, Treda C, Stawski R, Radomiak-Zaluska A, Piaskowski S
2014Structural basis for Klf4 recognition of methylated DNANucleic Acids ResearchYiwei Liu, Yusuf Olatunde Olanrewaju, Yu Zheng, Hideharu Hashimoto, Robert M. Blumenthal, Xing Zhang, Xiaodong Cheng
2014Strand Invasion Based Amplification (SIBA®): A Novel Isothermal DNA Amplification Technology Demonstrating High Specificity and Sensitivity for a Single Molecule of Target AnalytePLoS OneHoser MJ, Mansukoski HK, Morrical SW, Eboigbodin KE
2014The other face of restriction: modification-dependent enzymesNucleic Acids Res.Loenen, W.A.M. and Raleigh, E.A.
2014The role of an asymmetrically inherited endosymbiont in robust establishment of host embryonic polarityPLoS Negl. Trop. DisLandmann, F., Foster, J.M., Michalski, S., Slatko, B., Sullivan, W.
2014The CLO3403/CLO3404 Two-Component System of Clostridium botulinum E1 Beluga Is Important for Cold Shock Response and Growth at Low TemperaturesAppl Environ MicrobiolMascher G, Derman Y, Kirk DG, Palonen E, Lindström M, Korkeala H
2014The complex methylome of the human gastric pathogen Helicobacter pyloriNucleic Acids ResKrebes J, Morgan RD, Bunk B, Spröer C, Luong K, Parusel R, Anton BP, König C, Josenhans C, Overmann J, Roberts RJ, Korlach J, Suerbaum S
2014Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types.ScienceJaitin, DA., Kenigsberg, E., Keren-Shaul, H., Elefant, N., Paul, F., Zaretsky, I., Mildner, A., Cohen, N., Jung, S., Tanay, A. and Amit, I.
2014Cofactor-Independent Phosphoglycerate Mutase from Nematodes Has Limited Druggability, as Revealed by Two High-Throughput ScreensPLoS Negl Trop Dis.Crowther, G.J., Booker, M.L., He, M., Li, T., Raverdy, S., Novelli, J.F., He, P., Dale, N.R.G., Fife, A.M., Barker, R.H., Jr., Kramer, M.L., Van Voorhis, W.C., Carlow, C.K.S. and Wang, M-W.
2014Co-evolution between an Endosymbiont and Its Nematode Host: Wolbachia Asymmetric Posterior Localization and AP Polarity EstablishmentPLoS Negl Trop Dis Landmann F, Foster JM, Michalski ML, Slatko BE, Sullivan W
2014Comparison of Subtypes of Listeria monocytogenes Isolates from Naturally Contaminated Watershed Samples with and without a Selective Secondary EnrichmentPLoS ONEGorski L, Walker S, Liang AS, Nguyen KM, Govoni J, et al.
2014Colonization state influences the hemocyte proteome in a beneficial squid-Vibrio symbiosisMol Cell ProteomicsSchleicher, T.R., VerBerkmoes, N.C., Shah, M., Nyholm, S.V.
2014Characterization of cleavage intermediate and star sites of RM.Tth111II.Sci RepZhu, Z., Guan, S., Robinson, D., El Fezzazi, H., Quimby, A. and Xu, S-Y.
2014Boronic acid-mediated polymerase chain reaction for gene- and fragment-specific detection of 5-hydroxymethylcytosineNucleic Acids ResZhao C, Wang H, Zhao B, Li C, Yin R, Song M, Liu B, Liu Z, Jiang G
2014Clathrin-independent pathways do not contribute significantly to endocytic fluxElifeBitsikas V, Corrêa IR, Nichols BJ
2014Characterization of Family D DNA polymerase from Thermococcus sp. 9°NExtremophilesGreenough L, Menin JF, Desai NS, Kelman Z, Gardner AF
2014DNA polymerases in biotechnologyFront Microbiol.Gardner, A.F. and Kelman, Z.
2014Diversity and Expression of MicroRNAs in the Filarial Parasite, Brugia malayi.PLoS OnePoole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA.
2014Complete genome sequence of a multidrug resistant Salmonella enterica serovar Typhimurium var. 5-strain isolated from chicken breastGenome Announc.Hoffmann, M., Muruvanda, T., Allard, M.W., Korlach, J., Roberts, R.J., Timme, R., Payne, J., McDermott, P.F., Evans, P., Meng, J., Brown, E.W., Zhao, S.
2014Complementation of essential yeast GPI mannosyltransferase mutations suggests a novel specificity for certain Trypanosoma and Plasmodium PigB proteinsPLoS OneCortes, L.K., Scarcelli, J.J., Taron, C.H.
2014Concurrent transcriptional profiling of Dirofilaria immitis and its Wolbachia endosymbiont throughout the nematode life cycle reveals coordinated gene expressionBMC GenomicsLuck, A.N., Evans, C.C., Foster, J.M., et al.
2014A restriction enzyme-powered autonomous DNA walking machine: its application for a highly sensitive electrochemiluminescence assay of DNANanoscaleYing Chen, Yun Xiang, Ruo Yuan, Yaqin Chai
2014A simple and efficient strategy for the de novo construction of greater-than-genome-length hepatitis B virus repliconsJ Virol MethodsWang XJ, Zhang XJ, Hu W, Zhang TY, Wang SQ
2014A semi-synthetic organism with an expanded genetic alphabetNatureMalyshev, D.A., Dhami, K., Lavergne, T., chen, T., Dai, N., Foster, J.M., Correa Jr., I.R. and Romesberg, F.E.
2014A crime against humanity.China Policy ReviewRoberts, R.J.
2014Absense of Wolbachia endobacteria in the human parasitic nematode Dracunculus medinensis and two related Dracunculus species infecting wildlifeParasit VectorsFoster, J.M., Landmann, F., Ford, L., Johnston, K.L., Elsasser, S.C., Schulte-Hostedde, A.I., Taylor, M.J., Slatko, B.E.
2014Anti-Wolbachia drug discovery and development: safe macrofilaricides for onchocerciasis and lymphatic filariasisParasitology/FirstView ArticleTaylor, M.J., Hoerauf, A., Townson, S., Slatko, B.E. and Ward, S.A.
2014A Target Repurposing Approach Identifies N-myristoyltransferase as a New Candidate Drug Target in Filarial NematodesPLoS Negl Trop Dis.Galvin, B.D., Li, Z., Villemaine, E., Poole, C.B., Chapman, M.S., Pollastri, M.P., Wyatt, P.G., Carlow, C.K.
2014A simple isothermal DNA amplification method to screen black flies for Onchocerca Volvulus infectionPLoS OneAlhassan, A., Makepeace, B.L., LaCourse, E.J., Osei-Atweneboana, M.Y., Carlow, C.K.S.
2014Efficient DNA ligation in DNA–RNA hybrid helices by Chlorella virus DNA ligaseNucleic Acids ResearchGregory J. S. Lohman, Yinhua Zhang, Alexander M. Zhelkovsky, Eric J. Cantor, Thomas C. Evans Jr.
2014Identification of restriction-modification systems of Bifidobacterium animalis subsp. lactis CNCM I-2494 by SMRT sequencing and associated methylome analysisPLoS OneO'Connell Motherway M, Watson D, Bottacini F, Clark TA, Roberts RJ, Korlach J, Garault P, Chervaux C, van Hylckama Vlieg JE, Smokvina T, van Sinderen D
2014Identification and characterization of mutant clones with enhanced propagation rates from phage-displayed peptide librariesAnal BiochemNguyen KT, Adamkiewicz MA, Hebert LE, Zygiel EM, Boyle HR, Martone CM, Meléndez-Ríos CB, Noren KA, Noren CJ, Hall MF
2014Highlights of the DNA cutters: a short history of the restriction enzymesNucleic Acids ResLoenen WA, Dryden DT, Raleigh EA, Wilson GG, Murray NE
2014Gill bacteria enable a novel digestive strategy in a wood-feeding molluskProc Natl Acad Sci.O'Connor, R.M., Fung, J.M., Sharp, K.H., Benner, J.S., McClung, C., Cushing, S., Lamkin, E.R., Fomenkov, A.I., Henrissat, B., Londer, Y.Y., et al.
2014Live-cell reporters for fluorescence imagingCurr Opin Chem BiolCorrêa IR Jr.
2014Intranasal mRNA nanoparticle vaccination induces prophylactic and therapeutic anti-tumor immunitySci RepPhua KK, Staats HF, Leong KW, Nair SK
2014Mammalian epigenetic mechanismsIUBMB LifeZhang, G. and Pradhan, S.
2014Genomics of CpG methylation in developing and developed zebrafishG3 (Bethesda)McGaughey DM, Abaan HO, Miller RM, Kropp PA, Brody LC
2014Epigenetic silencing of apoptosis-inducing gene expression can be efficiently overcome by combined SAHA and TRAIL treatment in uterine sarcoma cellsPLoS OneFröhlich LF, Mrakovcic M, Smole C, Lahiri P, Zatloukal K
2014Evaluation of fluorophores to label SNAP-tag fused proteins for multicolor single-molecule tracking microscopy in live cellsBosch PJ, Corrêa IR Jr, Sonntag MH, Ibach J, Brunsveld L, Kanger JS, Subramaniam V
2014Establishment of a CpG island microarray for analyses of genome-wide DNA methylation in Chinese hamster ovary cellsAppl Microbiol BiotechnolWippermann A, Klausing S, Rupp O, Albaum SP, Büntemeyer H, Noll T, Hoffrogge R
2014Engineering Bacterial Transcription Regulation To Create a Synthetic in Vitro Two-Hybrid System for Protein Interaction AssaysJ Am Chem SocZhou Y, Asahara H, Schneider N, Dranchak P, Inglese J, Chong S
2014Elimination of inter-domain interactions increases the cleavage fidelity of the restriction endonuclease DraIIIProtein CellZhuo W, Lai X, Zhang L, Chan SH, Li F, Zhu Z, Yang M, Sun D
2014 Genome and Metagenome Sequencing: Using the Human Methyl-Binding Domain to Partition Genomic DNA Derived from Plant Tissues. Applications in Plant SciencesErbay Yigit, David I. Hernandez, Joshua T. Trujillo, Eileen Dimalanta, and C. Donovan Bailey
2014Expanded genetic codes in next generation sequencing enable decontamination and mitochondrial enrichmentPLoS OneMcKernan KJ, Spangler J, Zhang L, Tadigotla V, McLaughlin S, Warner J, Zare A, Boles RG
2014Evolution, mechanisms, and applications of intein-mediated protein splicingJ Biol ChemPerler FB, Allewell NM
2013Decreased vancomycin susceptibility in Staphylococcus aureus caused by IS256 tempering of WalKR expressionAntimicrob Agents ChemotherMcEvoy CR, Tsuji B, Gao W, Seemann T, Porter JL, Doig K, Ngo D, Howden BP, Stinear TP
Structural basis for human PRDM9 action at recombination hot spots.Genes Dev.Patel, A., Horton, J.R., Wilson, G.G., Zhang, X. and Cheng, X.
Screening of genetic parameters for soluble protein expression in Escherichia coliProtein Expression and PurificationVernet, E., Kotzsch, A., Voldborg, B., et al.
2014REBASE - A database for DNA restriction and modification: enzymes, genes and genomesNucleic Acids Research, Advance Access Roberts, R.J., Vincze, T., Posfai, J., Macelis, D.
In vitro RNA interference and immunofluorescence-based phenotype analysis in a human parasitic nematode, Brugia malayiParasites and VectorsLandmann, F., Foster, J.M., Slatko, B.E. and Sullivan, W.
Identification of a cardiac specific protein transduction domain by in vivo biopanning using a M13 phage peptide display library in micePLoS OneZahid, M. et al.
Efficient DNA ligation in DNA-RNA hybrid helices by Chlorella
Near-Infrared Fluorescence Imaging of Mammalian Cells and Xenograft Tumors with SNAP-tagPLoS ONEGong, H.; Kovar, J. L.; Baker, B.; Zhang, A.; Cheung, L.; Draney, D. R.; Corrêa, I. R., Jr.; Xu, M.-Q.; Olive, M. D.
Production of disulfide-bonded proteins in Escherichia coliBerkmen, M.
1989M.FokI methylates adenine in both strands of its asymmetric recognition sequence.Gene Landry, D., Looney, M.C., Feehery, G.R., Slatko, B.E., Jack, W.E., Schildkraut, I., and Wilson, G.G.
1989Isolation and characterization of restriction endonuclease BstFI and BstSI from Bacillus stearothermophilus.J.Fudan Univ.Natural Sci.Chen Z., Kong, H.and Wang, L.
1989Introduction of prokaryotic HhaI DNA methyltransferase alters the phenotype of 3T3 cells.Proc.Am.Assoc.Cancer Res.Herman, J., Nelkin, B., Mabry, M., Wilson, G., and Baylin, S.
1989MscI, a type II restriction endonuclease from Micrococcus species which recognizes 5' TGGCCA 3'.Nucl.Acids Res.Polisson, C.
1989Use of Degenerate Oligonucleotides for Amplification of the nifH Gene from the Marine Cyanobacterium Trichodesmium thiebautii.Appl.Environ.Microbiol.,Zehr, J.P., and McReynolds, L.A.
1989Site-directed mutagenesis of the EcoRV methylase for the study of the functional role of the conserved sequences in N6-adenine methylasesJ. Cell BiochemBarshevsky,T. and Benner J.S.
1989Nucleotide sequence of the FokI restriction-modification system: separate strand-specificity domains in the methyltransferase.Gene Looney, M.C., Moran, L.S., Jack, W.E., Feehery, G.R., Benner, J.S., Slatko, B.E., and Wilson, G.G.
1989Characterization of clones of the BamHI methyltransferase geneJ. Cell Biochem.Nathan, P.D. and Brooks. J.E.
1989Characterization and cloning of MwoI (GCN7GC), a new type-II restriction-modification system from Methanobacterium wolfei.Gene Lunnen, K.D., Morgan, R.D., Timan, C.J., Krzycki, J.A., Reeve, J.N., and Wilson, G.G.
1989A l gt11 cDNA recombinant that encodes Dirofilaria immitis paramyosin.Mol.Biochem.Parasitol.Grandea, A.G.I., Le, T.K.T., Asikin, N., Davis, T.B., Philipp, M., Cohen, C., and McReynolds, L.A.
1989Cloning the BamHI restriction modification system.Nucl.Acids Res.Brooks, J.E., Benner, J.S., Heiter, D.F., Silber, K.R., Sznyter, L.A., Jager-Quinton, T., Moran, L.S., Slatko, B.E., Wilson, G.G., and Nwankwo, D.O.
1989Human T-cell stimulation, molecular characterization and in situ mRNA localization of a Brugia malayi recombinant antigen.Mol.Biochem.Parasitol.Arasu, P., Nutman, T.B., Steel, C., Mulligan, M.M., Abraham, D., Tuan, R.S., and Perler, F.B.
1989Genetic and physical mapping of the mcrA (rglA) and mcrB (rglB) loci of Escherichia coli K-12.GeneticsRaleigh, E.A., Trimarchi, R., and Revel, H.
1989DrdI, a unique restriction endonuclease from Deinococcus radiodurans which recognizes 5'GACN6GTC3'.Nucl.Acids Res.Polisson, C., and Morgan, R.D.
1988Isolation and properties of a new site specific endonuclease Bme142I from Bacillus megateriumNucleic Acids Res.Fomenkov, A.I., Kramarov, V.M., Andreev, L.V., Mochalov, V.V., Smolyaninov, V.V., Matvienko, N.I.
1988McrA and McrB restriction phenotypes of some E.coli strains and implications for gene cloning.Nucl.Acids Res.Raleigh, E.A., Murray, N.E., Revel, H., Blumenthal, R.M., Westaway, D., Reith, A.D., Rigby, P.W.J., Elhai, J., and Hanahan, D.
1988MseI, a unique restriction endonuclease from Micrococcus species which recognizes 5'T^TAA 3'.Nucl.Acids Res.Morgan, R.D.
1988Isolation and characterization of restriction endonuclease BstYI from Bacillus stearothermophilus.FEBS Lett.Chen Z.and Kong, H.
1988EarI, a restriction endonuclease from Enterobacter aerogenes which recognizes 5'CTCTTC3'.Nucl.Acids Res.Polisson, C., and Morgan, R.D.
1988Genetic dissection of the methylcytosine-specific restriction system mcrB of Escherichia coli K-12.GeneDila, D., and Raleigh, E.A.
1988IMMUNITY IN FILARIASIS: Perspectives for Vaccine Development.Ann.Rev.Microbiol.Philipp, M., Davis , T.B., Storey, N., and Carlow, C.K.S.
1988The characterization and cloning of the NotI restriction-modification systemHereditySznyter, L.A., Brooks. J.E.
1988Type II restriction-modification systems.Trends in Genetics Wilson, G.G.
1988Vectors that facilitate the expression and purification of foreign peptides in Escherichia coli by fusion to maltose-binding protein.GeneGuan, C.D., Li, P., Riggs, P.D., and Inouye, H.
1988The characterization and cloning of the EagI restriction-modification system.Gene Sznyter, L.A., and Brooks, J.E.
1988Nomenclature for bacterial genes coding for class-II restriction endonucleases and modification methyltransferases.GeneSzybalski, W., Blumenthal, R.M., Brooks, J.E., Hattman, S., and Raleigh, E.A.
1988Species-specific oligonucleotide probes for the identification of human filarial parasites.Mol.Biochem.Parasitol.Williams, S.A., DeSimone, S.M., and McReynolds, L.A.
1988The Amino Acid Sequence of the Eukaryotic DNA [N6-adenine] Methyltransferase, M-CviBIII, Has Regions of Similarity With the Prokaryotic Isoschizomer M-TaqI and Other DNA [N6-adenine] Methyltransferases.GeneNarva, K.E., Van Etten, J.L., Slatko, B.E.and Benner, J.S.
1988Cloning Type II restriction and modification genes.GeneLunnen, K.D., Barsomian, J.M., Camp, R.R., Card, C.O., Chen, S.Z., Croft, R., Looney, M.C., Meda, M.M., Moran, L.S., Nwankwo, D.O., Slatko, B.E., Van Cott, E.M., and Wilson, G.G.
1988Characterization of clones of the BamHI methyltransferase gene.GeneNathan, P.D.and Brooks, J.E.
1988Cloned restriction-modification systems - a review.GeneWilson, G.G.
1988Cloning and analysis of the HaeIII and HaeII methyltransferase genes.GeneSlatko, B.E., Croft, R., Moran, L.S., and Wilson, G.G.
1988BsrI, a unique restriction endonuclease from Bacillus stearothermophilus which recognizes 5'ACTGG3'.Nucl.Acids Res.Polisson, C., and Morgan, R.D.
1988A site-specific single strand endonuclease activity induced by NYs-1 virus infection of a Chlorella-like green alga.Nucl.Acids Res.Xia, Y., Morgan, R., Schildkraut, I., and Van Etten, J.L.
1988An Escherichia coli vector to express and purify foreign proteins by fusion to and separation from maltose-binding protein.GeneMaina, C.V., Riggs, P.D., Grandea, A.G.I., Slatko, B.E., Moran, L.S., Tagliamonte, J.A., McReynolds, L.A., and Guan, C.D.
1988AseI, a restriction endonuclease from Aquaspirillum serpens which recognizes 5'ATTAAT3'.Nucl.Acids Res.Polisson, C., and Morgan, R.D.
1988Cloning, purification and characterization of the HincII and HindII methyltransferases from Haemophilus influenzae.GeneRees, P.A., Nwankwo, D.O., Wilson, G.G., and Benner, J.S.
1988Cloning, purification and characterization of the M.NdeI methyltransferase from Neisseria denitrificansGeneSilber, K.R., Polisson, C., Rees, P.A., and Benner, J.S.
1988Cloning the FnuDI, NaeI, NcoI and XbaI restriction-modification systems.GeneVan Cott, E.M., and Wilson, G.G.
1988Cloning of the HhaI and HinPI restriction-modification systems.GeneBarsomian, J.M., Card, C.O., and Wilson, G.G.
1988Cloning and characterization of the BamHI restriction modification systemGeneBrooks, J.E., Benner, J.S., Silber, K.R., Heiter, D.F., Sznyter, L.A., Jager-Quinton, T., Wilson, G.G., Moran, L.S., Slatko, B.E., Nwankwo, D.O.
1988Cloning and expression of the MspI restriction and modification genes.GeneNwankwo, D.O., and Wilson, G.G.
1988Cloning and sequencing the HinfI restriction and modification genes.GeneChandrasegaran, S., Lunnen, K.D., Smith, H.O., and Wilson, G.G.
1987Nucleotide sequence of the DdeI restriction-modification system and characterization of the methylase protein.Nucl.Acids Res.Sznyter, L.A., Slatko, B., Moran, L., O'Donnell, K.H., and Brooks, J.E.
1987Properties and uses of restriction endonucleases.Methods Enzymol.Brooks, J.E.
1987Protective immunity to Brugia malayi larvae in BALB/c mice: potential of this model for the identification of protective antigens.Am.J.Trop.Med.Hyg.Carlow, C.K.S., and Philipp, M.
1987Monoclonal antibody to a unique surface epitope of the human filaria Brugia malayi identifies infective larvae in mosquito vectors.Proc.Natl.Acad.Sci.USA Carlow, C.K.S., Franke, E.D., Lowrie, R.C.J., Partono, F., and Philipp, M.
1987N4-Methylcytosine as a minor base in bacterial DNA.J.Bacteriol.Ehrlich, M., Wilson, G.G., Kenneth, C.K., and Gehrke, C.W.
1987NotI and SfiI: restriction endonucleases with octanucleotide recognition sequences.Methods Enzymol.Qiang, B.-Q., and Schildkraut, I.
1987Purification and assay of Type II DNA methylases.Methods Enzymol.Nelson, M., and McClelland, M.
1987The effect of site-specific methylation on restriction-modification enzymes.Nucl.Acids Res.Nelson, M., and McClelland, M.
1987The use of DNA methylases to alter the apparent recognition specificities of restriction endonucleases.Methods Enzymol.Nelson, M., and Schildkraut, I.
1987The Use of DNA Sequencing Reactions as Probes for Southern Blots, Dot Blots and Colony Hydridizations.BioTechniquesCard, C.O., Williams, S.A., Moran, L.S., Poole, C.B., and Slatko, B.E.
1987Restriction and modification in vivo by Escherichia coli K12Methods Enzymol.Raleigh, E.A.
1987Restriction endonucleases for pulsed field mapping of bacterial genomes.Nucl.Acids Res.McClelland, M., Jones, R., Patel, Y., and Nelson, M.
1987The cleavage site for the restriction endonucleases BanI and HgiCI is 5' ...G^GPyPuCC ...3'.Nucl.Acids Res.Schildkraut, I., Lynch, J., and Morgan, R.
1987Cloning and characterization of an abundant Plasmodium knowlesi antigen which cross reacts with Gambian sera.Mol.Biochem.Parasitol.Perler, F.B., Moon, A.M., Qiang, B.-Q., Meda, M., Dalton, M., Card, C., Schmidt-Ullrich, R., Wallach, D., Lynch, J., and Donelson, J.E.
1987Cloning of two type II methylase genes that recognise asymmetric nucleotide sequences: FokI and HgaI.Mol.Gen.Genet.Nwankwo, D., and Wilson, G.
1987Cloning, sequencing and expression of the TaqI restriction-modification system.Nucl.Acids Res.Slatko, B.E., Benner, J.S., Jager-Quinton, T., Moran, L.S., Simcox, T.G., VanCott, E.M., and Wilson, G.G.
1987A Developmentally regulated surface epitope expressed by the infective larva of Brugia malayi which is rapidly lost after infection.Molecular Paradigms for Eradicating Helmenthic ParasitesCarlow, C.K.S., Perrone, J., Spielman, A., and Philipp, M.A.
1987A unique type II restriction endonuclease from Acinetobacter lwoffi N.Nucl.Acids Res.Morgan, R.D., Dalton, M., and Stote, R.
1987Brugia malayi: recombinant antigens expressed by genomic DNA clones.Exp.Parasitol.Arasu , P., Philipp, M., and Perler, F.
1987Cloning, sequencing, in vivo promoter mapping, and expression in Escherichia coli of the gene for the HhaI methyltransferase.J.Biol.Chem.Caserta, M., Zacharias, W., Nwankwo, D., Wilson, G.G., and Wells, R.D.
1987Highly Repeated DNA Sequences as Species-specific Probes for Brugia.Parasitology TodayPiessens, W.F., McReynolds, L.A.and Williams, S.A.
1987Isolation and Identification of restriction endonuclease BstFINucl.Acids Res.Kong, H and Chen, Z.
1987Monoclonal antibodies to parasite antigens: a rapid immunization protocol requiring small numbers of parasites.J.Parasitol.Carlow, C.K.S., Edwards, M.K., James, E.R., and Philipp, M.
1987Dirofilaria immitis: Genomic Complexity and Characterication of a Structural Gene.Molecular Paradigms for Eradicating Helminthic ParasitesMaina, C.V., Grandea, A.G.I., Le, T.K.T., Nur, A., Williams, S.A., and McReynolds, L.A.
1987Enhancement of the apparent cleavage specificities of restriction endonucleases: applications to megabase mapping of chromosomes.McClelland, M., and Nelson, M.
1987Genomic Cloning of Recombinant Antigens Detected by Antiserum Against Infective Larvae of Brugia Malayi.Molecular Paradigms for Eradicating Helminthic ParasitesArasu, P., and Perler, F.B.
1990Filarial paramyosin: cDNA sequences from Dirofilaria immitis and Onchocerca volvulus.Mol.Biochem.Parasitol.Limberger, R.J., and McReynolds, L.A.
1990Genetic and sequence organization of the mcrBC locus of Escherichia coli K-12.J.Bacteriol.Dila, D., Sutherland, E., Moran, L., Slatko, B., and Raleigh, E.A.
1990Cloning, characterization, and expression in Escherichia coli of the gene coding for the CpG DNA methylase from Spiroplasma sp.strain MQ1(M.SssI).Nucl.Acids Res.Renbaum, P., Abrahamove, D., Fainsod, A., Wilson, G.G., Rottem, S., and Razin, A.
1990Field testing of monoclonal probe specific for infective larvae of human Brugian parasites.Parasites: Molecular Biology, Drug and Vaccine DesignCarlow, C.K.S., Suwita, A., Bahang, Z., Purnomo, Partono, F., and Philipp, M.
1990Structural studies opf the BamHI restriction enzymeBiophys. J.Strzelecka, T., Dorner, L., Schildkraut, I., Aggarawal, A.
1990The identification of an Onchocerca-specific recombinant antigen containing a T cell epitope.J Immunol.Colina, K.F., Perler, F.B., Matsumura, I., Meda, M., and Nutman, T.B.
1990Identification of a new type II restriction endonuclease BsaAI.Nucl.Acids Res.Kong, H., Morgan, R.D., and Chen, Z.
1990Nucleotide sequence of the phage l gt11 SacI-KpnI lacZ region.GeneMoran, L.S., Maina, C.V., Poole, C.B., and Slatko, B.E.
1990Cloning and Characterization of the SphI restriction modification system from Streptomyces phaeochromogenesJ Cell BiochemBrooks, J.E., Sznyter, L., Vaccaro, C., Arnaud, M., Jager-Quinton, T., Wilson, G., Moran, L., Slatko, B., Bernan, V.
1990Altered specificity of restriction endonucleases HinfI.Nucl.Acids Res.Petronzio, T., and Schildkraut, I.
1990Antigenic and dynamic properties of the surface of Onchocerca microfilariae.Trop.Med.Parasitol.Edwards, M.K., Busto, P., James, E.R., Carlow, C.K.S., and Philipp, M.
1990A new type II restriction endonuclease, BsmAI, from Bacillus stearothermophilus.Nucl.Acids Res.Kong, H., Morgan, R.D., and Chen, Z.
1990AciI, a unique restriction endonuclease from Arthrobacter citreus which recognizes 5' CCGC3'.Nucl.Acids Res.Polisson, C., and Morgan, R.D.
1990Cleavage at the twelve-base-pair sequence 5'-TCTAGATCTAGA-3' using M.XbaI (TCTAGm6A) methylation and DpnI (Gm6A/TC) cleavage.Nucl.Acids Res.Patel, Y., Van Cott, E., Wilson, G.G., and McClelland, M.
1990Cloning and characterization of the HpaII methylase gene.Nucl.Acids Res.Card, C.O., Wilson, G.G., Weule, K., Hasapes, J., Kiss, A., and Roberts, R.J.
1990Anti-idiotypic antibodies function as a surrogate surface epitope of Brugia malayi infective larvae.Acta Trop.Carlow, C.K.S., Busto, P., Storey, N., and Philipp, M.
1990B CELL RESPONSES TO PARAMYOSIN.Isotypic Analysis and Epitope Mapping of Filarial Paramyosin in Patients with Onchocerciasis.J.Immunol.Steel, C., Limberger, R.J., McReynolds, L.A., Ottesen, E.A., and Nutman, T.B.
1993Recent Advances in the Application of Molecular Biology in Filariasis.Proceeding of the 34th SEAMEO TROPMED Regional Seminar: Southeast Asian Journal of Tropical Medicine and Public HealthMcReynolds, L.A., Poole, C., Hong, Y., Williams, S.A., Partono, F., and Bradley, J.
1993Restriction enzymes from Campylobacter coli strains.Acta gastroenterol.belg.Vitor, J.M.B., Polisson, C., Cabrita, J., and Silva, R.V.C.
1993REBASE-restriction enzymes and methylases.Nucl.Acids Res.Roberts, R.J.and Macelis, D.
1993McrBC, a novel multisubunit GTP-dependent restriction endonuclease.J.Cell Biochem.Suppl.Raleigh, E., Dila, D., Sutherland, E., Kelleher, J., Moran, L., Slatko, B., and Briggs, P.
1993Protecting Recognition Sequences on DNA by a Cleavage-Deficient Restriction Endonuclease.BioTechniquesXu, S., and Schildkraut, I.
1993Type II Restriction EndonucleasesNucleasesRoberts, R.J.and Halford, S.E.
1993Workshop of DNA Probes and PCR for Detection of Filarial Parasies in VectorsWilliams, S.A.
1993The Restriction EnzymesNucleasesRoberts, R.J.and Macelis, D.
1993The M.AluI DNA-(cytosine C5)-methyltransferse has an unusually large, partially dispensable, variable region.Nucl.Acids Res.Zhang, B., Tao, T., Wilson, G.G., and Blumenthal, R.M.
1993The Polyprotien Allergens of Nematodes.Parasitol.Today McReynolds, L.A., Kennedy, M.W., and Selkirk, M.E.
1993Brugia pahangi and Brugia malayi: A Surface-Associated Glycoprotein (gp15/400) is Composed of Multiple Tandemly Repeated Units and Processed from a 400-kDa Precursor1.Exp.Parasitol.Tweedie, S., Paxton.W, A., Ingram, L., Maizels, R.M., McReynolds, L.A., and Selkirk, M.E.
1993Characterization of DNA Polymerase from the Hyperthermophile Archaea Thermococcus litoralis.J.Biol.Chem.Kong, H., Kucera, R.B., and Jack, W.E.
1993Brugia malayi and Brugia pahangi: synthetic biotin labeling of oligonucleotide probes for use in species-specific detection assays.Exp.Parasitol.Williams, S.A., Poole, C.B., Landry, D., Glover, J., and McReynolds, L.A.
1993A sensitive serodiagnostic test for onchocerciasis using a cocktail of recombinant antigens.Am J Trop Med Hyg.Bradley, J.E., Trenholme, K.R., Gillespie, A.J., Guderian, R., Titanji, V., Hong, Y., and McReynolds, L.
1993A unique restriction endonuclease, BcgI, from Bacillus coagulans.Nucl.Acids Res.Kong, H., Morgan, R.D., Maunus, R.E., and Schildkraut, I.
1993Crystal structure of the HhaI DNA methyltransferase complexed with S-adenosyl-L-methionine.CellCheng, X., Kumar, S., Posfai, J., Pflugrath, J.W., and Roberts, R.J.
1993In vitro protein splicing of purified precursor and the identification of a branched intermediate.Cell Xu, M.Q., Southworth, M.W., Mersha, F.B., Hornstra, L.J., and Perler, F.B.
1993Crystal Structure of the HhaI DNA Methyltransferase.Cheng, X., Kumar, S., Klimasauskas, S., and Roberts, R.J.
1993Cloning, sequencing and overexpressing the NaeI restriction endonuclease gene from Nocardia aerocolonigenesJ Cell BiochemTaron, C.H., Van Cott, E.M., Wilson, G.G., Moran, L.S., Slatko, B.E., Hornstra, L.J., Benner, J.S., Kucera, R.B. and Guthrie, E.P.
1993Compilation of Commercially Available NucleasesNucleasesSchildkraut, I.
1992Organization and function of the mcrBC genes of Escherichia coli K-12.Mol.Microbiol Raleigh, E.A.
1992Protein splicing removes intervening sequences in an archaea DNA polymerase.Nucl.Acids Res.Hodges, R.A., Perler, F.B., Noren, C.J., and Jack, W.E.
1992Intervening sequences in an Archaea DNA polymerase gene.Proc.Natl.Acad.Sci.USA Perler, F.B., Comb, D.G., Jack, W.E., Moran, L.S., Qiang, B., Kucera, R.B., Benner, J., Slatko, B.E., Nwankwo, D.O., Hempstead, S.K., Carlow, C.K.S.and Jannasch, H.
1992McrBC: a multisubunit GTP-dependent restriction endonuclease.J.Mol.Biol.Sutherland, E., Coe, L., and Raleigh, E.A.
1992Transmission-blocking antibodies recognize microfilarial chitinase in brugian lymphatic filariasis.Proc.Natl.Acad.Sci.USAFuhrman, J.A., Lane, W.S., Smith, R.F., Piessens, W.F., and Perler, F.B.
1992Using Molecular Biological Techniques to Identify and Study Gene Products Involved in Dirofilarial Immunoprophylaxis.American Heartworm SocietyHough, D.M., Awobuluyi, M.E., McReynolds, L.A., Carlow, C.K.S., and Maina, C.V.
1992Regulation of the BamHI restriction-modification system by a small intergenic open reading frame, bamHIC, in both Escherichia coli and Bacillus subtilis.J.Bacteriol.Ives, C.L., Nathan, P.D., and Brooks, J.E.
1992The corrected nucleotide sequences of the TaqI restriction and modification enzymes reveal a thirteen-codon overlap.GeneBarany, F., Slatko, B., Danzitz, M., Cowburn, D., Schildkraut, I., and Wilson, G.G.
1992Brugia malayi: patterns of expression of surface-associated antigens.Exp.Parasitol.Storey, N.and Philipp, M.
1992Characterization of a muscle-associated antigen from Wuchereria bancrofti.Exp.Parasitol.Raghavan, N., Maina, C.V., Fitzgerald, P.C., Tuan, R.S., Slatko, B.E., Ottesen, E.A., and Nutman, T.B.
1992Amino acid sequence arrangements of DNA-methyltransferases.Methods Enzymol.Wilson, G.G.
1992ApoI, a unique restriction endonuclease from Arthrobacter protophormiae which recognizes 5' RAATTY-3'.Nucl.Acids Res.Polisson, C., and Robinson, D.
1992Cloning of a cuticular antigen that contains multiple tandem repeats from the filarial parasite Dirofilaria immitis.Proc.Natl.Acad.Sci.USAPoole, C.B., Grandea, A.G., III, Maina, C.V., Jenkins, R.E., Selkirk, M.E., and McReynolds, L.A.
1992Identification of surrogate rodent hosts for larval Onchocerca lienalis and induction of protective immunity in a model system.J Parasitol.Abraham, D., Eberhard, M.L., Lange, A.M., Yutanawiboonchai, W., Perler, F.B.and Lok, J.B.
1992Characterization of Type II DNA-Methyltransferases.Methods Enzymol.Landry, D., Barsomian, J.M., Feehery, G.R., and Wilson, G.G.
1992CircumVent» Thermal Cycle Sequencing and Alternative Manual and Automated DNA Sequencing Protocols Using the Highly Thermostable VentR» (exo-) DNA Polymerase.BioTechniquesSears, L.E., Moran, L.S., Kissinger, C., Creasey, T., Perry-O'Keefe, H., Roskey, M., Sutherland, E., and Slatko, B.E.
1991Histochemical localization of gene expression in Onchocerca volvulus: in situ DNA histohybridization and immuno-cytochemistry.Mol.Biochem.Parasitol.Tuan, R.S., Shepley, K.J., M.M., M., Abraham, D., and Perler, F.B.
1991Isolation of BamHI variants with reduced cleavage activities.J.Biol.Chem.Xu, S.Y., and Schildkraut, I.
1991Cross-linking of a monoclonal antibody-antigen complex enables detection of parasite antigen in immunoblots and in an expression library.Mol.Biochem.Parasitol.Awobuluyi, M., Mania, C.V., and Carlow, C.K.S.
1991Filarial DNA probes in Jakarta.Parasitol.TodayMcReynolds, L.A., Poole, C.B., and Williams, S.A.
1991Overexpression, purification and crystallization of BamHI endonuclease.Nucl.Acids Res.Jack, W.E., Greenough, L., Dorner, L.F., Xu, S.Y., Strzelecka, T., Aggarwal, A.K., and Schildkraut, I.
1991Restriction and Modification Systems.Ann.Rev.Genet.Wilson, G.G., and Murray, N.E.
1991Nomenclature relating to restriction of modified DNA in Escherichia coli.J.Bacteriol.Raleigh, E.A., Benner, J., Bloom, F., Braymer, H.D., DeCruz, E., Dharmalingam, K., Heitman, J., Noyer-Weidner, M., Piekarowicz, A., Kretz, P.L., Short, J.M., and Woodcock, D.
1991Organization of restriction-modification systems.Nucl.Acids Res.Wilson, G.G.
1991Application of a novel chemiluminescence-based DNA detection method to single-vector and multiplex DNA sequencing.BioTechniquesCreasey, A., D'Angio, L., Dunne, T.S., Kissinger, C., O'Keefe, T., Perry-O'Keefe, H., Moran, L.S., Roskey, M., Schildkraut, I.and Sears, L.E.
1991BfaI, a new MaeI isoschizomer from Bacteroides fragilis, recognizes the sequence 5' C^TAG 3'.Nucl.Acids Res.Reinecke, S.N., and Morgan, R.D.
1991A new type II restriction endonuclease, BsoOI, from Bacillus stearothermophilusChinese Sci. BullPan, X.S. and Chen, Z.F.
1991A Novel Activity in Escherichia coli K-12 That Directs Restriction of DNA Modified at CG Dinucleotides.J.Bacteriol.Kelleher, J.E., and Raleigh, E.A.
1991Characterization of the cloned BamHI restriction modification system: its nucleotide sequence, properties of the methylase, and expression in heterologous hosts.Nucl.Acids Res.Brooks, J.E., Nathan, P.D., Landry, D., Sznyter, L.A., Waite-Rees, P., Ives, C.L., Moran, L.S., Slatko, B.E., and Benner, J.S.
1991Cofactor requirements of BamHI mutant endonuclease E77K and its suppressor mutants.J.Bacteriol.Xu, S.Y., and Schildkraut, I.
1991Chacterization of Expression of the Escherichia coli Mrr Restriction System.J.Bacteriol.Waite-Rees, P.A., Keating, C.J., Moran, L.S., Slatko, B.E., Hornstra, L.J., and Benner, J.S.
1991Characterization of a recombinant clone of Wuchereria bancrofti with specificity for human lymphatic filarial parasites.Mol.Biochem.Parasitol.Raghavan, N., McReynolds, L.A., Maina, C.V., Feinstone, S.M., Jayaraman, K., Ottesen, E., and Nutman, T.B.
1986Escherichia coli K-12 restricts DNA containing 5-methylcytosine.Proc.Natl.Acad.Sci.USA Raleigh, E.A., and Wilson, G.
1986Sequencing in the Fast Lane: A Rapid Protocol for [a-35S] dATP Dideoxy DNA Sequencing.BioTechniquesWilliams, S.A., Slatko, B.E., Moran, L.S., and DeSimone, S.M.
1986Two unique restriction endonucleases from Neisseria lactamica.Nucl.Acids Res.Qiang, B.Q., and Schildkraut, I.
1986Cloning the DdeI restriction-modification system using a two-step method.Nucl.Acids Res.Howard, K.A., Card, C., Benner, J.S., Callahan, H.L., Maunus, R., Silber, K., Wilson, G., and Brooks, J.E.
1986Biochemical and immunologic characterization of a major surface antigen of Dirofilaria immitis infective larvae.J.Immunol.Philipp, M., and Davis, T.B.
1986Cloning and characterization of two Onchocerca volvulus repeated DNA sequences.Mol.Biochem.Parasitol.Perler, F.B., and Karam, M.
1986Cloning and comparison of repeated DNA sequences from the human filarial parasite Brugia malayi and the animal parasite Brugia pahangi.Proc.Natl.Acad.Sci.USA McReynolds, L.A., DeSimone, S.M., and Williams, S.A.
1981Two new restriction endonucleases from Proteus vulgaris.Nucl.Acids Res.Gingeras, T.R., Greenough, L., Schildkraut, I., and Roberts, R.J.
1980The Evolution of Genes: the Chicken Preproinsulin GeneCellPerler, F.B.and Efstratiadis, A.
1980Restriction endonucleases from three strains of Haemophilus influenzaeSci. Sin.Shen, S.X., Li, Q.L., Yan, P,F., Zhou, B., Ye, S.Y., Lu, Y.Y., Wang, D.B.
1982NdeI: a restriction endonuclease from Neisseria denitrificans which cleaves DNA at 5'-CATATG-3' sequences.FEBS Lett.Watson, R.J., Schildkraut, I., Qiang, B.Q., Martin, S.M., and Visentin, L.P.
1985Purification of MboII methylase (GAAGmA) from Moraxella bovis: site specific cleavage of DNA at nine and ten base pair sequences.Nucl.Acids Res.McClelland, M., Nelson, M., and Cantor, C.R.
1985The effect of site specific methylation on restriction endonuclease digestion.Nucl.Acids Res.McClelland, M., and Nelson, M.
1985Nuclear and Mitochondrial DNA of the Primate Malarial Parasite Plasmodium Knowlesi.Mol.Biochem.Parasitol.Williamson, D.H., Wilson, R.J., Bates, P.A., McCready, S., Perler, F., and Qiang, B.Q.
1985Nucleotide sequence of the PaeR7 restriction/modification system and partial characterization of its protein products.Nucl.Acids Res.Theriault, G., Roy, P.H., Howard, K.A., Benner, J.S., Brooks, J.S., Waters, A.F., and Gingeras, T.R.
1984DNA modification methylases: New uses in the manipulation of DNA.BioTechniquesChrist, C., and Nelson, M.
1984Screening for and characterizing restriction endonucleasesGenetic EngineeringSchildkraut, I.
1984The cleavage site for the restriction endonuclease EcoRV is 5'-GAT^ATC-3'.GeneSchildkraut, I., Banner, C.D.B., Rhodes, C.S., and Parekh, S.
1984A type II restriction endonuclease with an eight nucleotide specificity from Streptomyces fimbriatus.Nucl.Acids.Res.Qiang, B.Q., and Schildkraut, I.
1984Acetylcholinesterase secreted by intestinal nematodes: a reinterpretation of its putative role of "biochemical holdfast."Trans.Royal Soc Trop.Med.and Hyg.Philipp, M.
1984Alteration of apparent restriction endonuclease recognition specificities by DNA methylases.Nucl.Acids Res.Nelson, M., Christ, C., and Schildkraut, I.
1983The isolation and characterization of the Escherichia coli DNA adenine methylase (dam) geneNucleic Acids Res.Brooks, J.E., Blumenthal, R.M., Gingeras, T.R.
1983Analysis of Regulation of phoB Expression Using a phoB-cat Fusion.J.Bacteriol.Guan, C., Wanner, B., and Inouye, H.
1994REBASE - restriction enzymes and methylasesNucl.Acids.Res.Roberts, R.J.and Macelis, D.
1994Protein splicing elements: inteins and exteins - a definition of terms and recommended nomenclature.Nucl.Acids Res.Perler, F.B., Davis, E.O., Dean, G.E., Gimble, F.S., Jack, W.E., Neff, N., Noren, C.J., Thorner, J., and Belfort, M.
1994Restriction and modification. In: Molecular Biology of Bacteriophage T4American Society for Microbiology, Washington, D.C.Carlson, K., Raleigh, E.A. and Hattman, S.
1994Response to UV Damage by Four Escherichia coli K-12 Restriction Systems.J.Bacteriol.Kelleher, J.E., and Raleigh, E.A.
1994Organization and sequence of the HpaII restriction-modification system and adjacent genes.GeneKulakauskas, S., Barsomian, J.M., Lubys, A., Roberts, R.J., and Wilson, G.G.
1994Molecular Cloning of an Onchocerca volvulus Extracellular Cu-Zn Superoxide Dismutase.Infect.Immun.James, E.R., McLean, D.C.J., and Perler, F.B.
1994Protein splicing: an analysis of the branched intermediate and its resolution by succinimide formation.EMBO J.Xu, M.Q., Comb, D.G., Paulus, H., Noren, C.J., Shao, Y., and Perler, F.B.
1994Organization and sequence of the SalI restriction-modification system.GeneRodicio, M.R., Quinton-Jager, T., Moran, L.S., Slatko, B.E., and Wilson, G.G.
1994Structure of PvuII endonuclease with cognate DNA.EMBO J.Cheng, X., Balendiran, K., Schildkraut, I., and Anderson, J.E.
1994Thermal cycle Dideoxy DNA Sequencing.Methods Mol.Biol.Slatko, B.E.
1994The I-CeuI endonuclease: purification and potential role in the evolution of Chlamydomonas group I introns.Eur. J. BiochemMarshall, P., Davis, T.B., Lemieux,C.
1994VISA: Visual Sequence Analysis for the comparison of multiple amino acid sequences.CABIOSPosfai, J., Szaraz, Z., and Roberts, R.J.
1994Three-dimensional structure of the adenine-specific DNA methyltransferase M.Taq I in complex with the cofactor S-adenosylmethionine.Proc.Natl.Acad.Sci.USA Labahn, J., Granzin, J., Schluckebier, G., Robinson, D.P., Jack, W.E., Schildkraut, I., and Saenger, W.
1994Structure of restriction endonuclease BamHI phased at 1.95 A resolution by MAD analysis.StructureNewman, M., Strzelecka, T., Dorner, L.F., Schildkraut, I., and Aggarwal, A.K.
1994Structure of restriction endonuclease BamHI and its relationship to EcoRI.NatureNewman, M., Strzelecka, T., Dorner, L.F., Schildkraut, I., and Aggarwal, A.K.
1994The 'endo-blue method' for direct cloning of restriction endonuclease genes in E.coli.Nucl.Acids Res.Fomenkov, A., Xiao, J.P., Dila, D., Raleigh, E., and Xu, S.Y.
1994The DNA (cytosine-5) methyltransferases.Nucl.Acids Res.Kumar, S., Cheng, X., Klimasauskas, S., Sha, M., Posfai, J., Roberts, R.J., and Wilson, G.G.
1994Construction of pSC101 derivatives with Camr and Tetr for selection or LacZ' for blue/white screening.BioTechniquesXu, S.Y., and Fomenkov, A.
1994Cloning, analysis and expression of the HindIII R-M-encoding genes.GeneNwankwo, D.O., Moran, L.S., Slatko, B.E., Waite-Rees, P.A., Dorner, L.F., Benner, J.S., and Wilson, G.G.
1994Crystallization and Preliminary X-ray Analysis of Restriction Endonuclease BamHI-DNA Complex.J.Mol.Biol.Strzelecka, T., Newman, M., Dorner, L.F., Knott, R., Schildkraut, I., and Aggarwal, A.K.
1994Crystallization and Preliminary Crystallographic Analysis of Two Endo-b-N-acetylglucosaminidases, Endo H and Endo F1.J.Mol.Biol.Van Roey, P., Silva, G.H., Rao, V., Plummer, J., T.H., Tarention, A.L., and Guan, C.
1994An amazing distortion in DNA induced by a methyltransferase (Nobel lecture)Bioscience Reports Roberts, R.J.
1994An amazing distortion in DNA induced by a methyltransferase (Nobel lecture)Angew.Chem.Int.Ed.Engl.Roberts, R.J.
1994Characterization of BcgI, a new kind of restriction-modification system.J.Biol.Chem.Kong, H., Roemer, S.E., Waite-Rees, P.A., Benner, J.S., Wilson, G.G., and Nwankwo, D.O.
1994An analysis of the humoral immune response of dogs following vaccination with irradiated infective larvae of Dirofilaria immitis.Parasite Immunol.Mejia, J.S., and Carlow, C.K.S.
1994Direct selection of binding proficient/catalytic deficient variants of BamHI endonuclease.Nucl.Acids.Res.Dorner, L.F., and Schildkraut, I.
1994Histone-encoding genes from Pyrococcus: evidence for members of the HMf family of archaeal histones in a non-methanogenic Archaeon*.Gene Sandman, K., Perler, F.B., and Reeve, J.N.
1994Hhal Methyltransferase Flips its Target Base Out of the DNA Helix.CellKlimasauskas, S., Kumar, S., Roberts, R.J., and Cheng, X.
1994Ligand-induced conformational states of the cytosine-specific DNA methyltransferase M.HgaI-2.J.Mol.Biol.Baldwin, G.S., Kelly, S.M., Price, N.C., Wilson, G.G., Connolly, B.A., Artymiuk, P.J., and Hornby, D.P.
1994Identification of a new type-II restriction enzyme BsrGI from Bacillus stearothermophilus GR75Chinese Sci. Bull.Chen, Z.F., Pan, X.S.
1994Expression of an Onchocerca volvulus Ov33 homolog in Dirofilaria immitis: potential in immunodiagnosis of heartworm infection.Parasite Immunol.Mejia, S.J., Knenfou, C., Southworth, M.W., Perler, F.B.and Carlow, C.K.
1994DNA sequencingCurr.Protoc.Mol.Biol.Slatko, B., Heinrich, P., Nixon, B.T., Eckert, R.L., Albright, L., and Ausubel, F.
1994Fibroblast growth factor and cyclic AMP (cAMP) synergistically active gene expression at a cAMP response element.Mol.Cell.Biol.Tan, Y., Low, K.G., Boccia, C., Grossman, J., and Comb, M.J.
1994Expression, purification, and crystallization of restriction endonuclease PvuII with DNA containing its recognition siteProteinsBalendiran, K., Bonventre, J., Knott, R., Jack, W., Benner, J., Schildkraut, I., and Anderson, J.E.
2005Productive interaction of chaperones with substrate protein domains allows correct folding of the downstream GFP domain.GeneZhang, A., Cantor, E.J., Barshevsky, T.and Chong, S.
2005Protein chemistry on the surface of living cells Chembiochem. Johnsson N. et al.
2005Phylogenetic detection of conserved gene clusters in microbial genomes.BMC Bioinformatics Zheng, Y., Anton, B.P., Roberts, R.J.and Kasif, S.
2005Preparation of an immunoadsorbent coupled with a recombinant antigen to remove anti-acetylcholine receptor antibodies in abnormal serum.J.Immunol.MethodsGuo, C.Y., Li, Z.Y., Xu, M.Q.and Yuan, J.M.
2005Protein synthesus by pure translation systemsMethodsShimizu, Y. Kanamori, T. and Ueda, T.
2005REBASE - restriction enzymes and DNA methyltransferases.Nucl.Acids.Res.Roberts, R.J., Vincze, T., Posfai, J.and Macelis, D.
2005Protein-functionalized polymer brushesBiomacromolecules Tugulu S. et al.
2005Protein Splicing Elements and Plants: From Transgene Containment to Protein Purification.Plant Biol.Evans, T.C., Jr., Xu, M.-Q.and Pradhan, S.
2005Measurement of the contributions of 1-D and 3-D pathways to the translocation of a protein along DNA.Proc.Natl.Acad.Sci.USAGowers, D.M., Wilson, G.G.and Halford, S.
2005Mining nematode genome data for novel drug targets.Trends Parasitol.Foster, J.M., Zhang, Y., Kumar, S.and Carlow, C.K.S.
2005Kluyveromyces lactis LAC4 Promoter Variants That Lack Function in Bacteria but Retain Full Function in K.lactis.Appl.Environ.Microbiol.Colussi, P.A.and Taron, C.H.
2005Live chemical reports from the cell surfaceChem. Biol. Cravatt B.F.
2005Novel carboxylated N-glycans contain oligosaccharide-linked glutamic acidBiochem. Biophys. Res. Commun. Srikrishna, G., Brive, L., Freeze, H.H.
2005Parasitic nematodes have two distinct chitin synthases.Mol.Biochem.Parasitol.Foster, J.M., Zhang, Y., Kumar, S.and Carlow, C.
2005Multicolor imaging of cell surface proteinsJ. Am. Chem. Soc. Vivero-Pol L. et al.
2005N-Glycans of Caenorhabditis elegans are specific to developmental stagesJ. Biol. Chem. Cipollo, J.F., Awad, A.M., Costello, C.E., Hirschberg, C.B.
2005Structure of HinP1I endonuclease reveals a striking similarity to the monomeric restriction enzyme MspI.Nucl.Acids.Res.Yang, Z., Horton, J.R., Maunus, R., Wilson, G.G., Roberts, R.R.and Cheng, X.
2005The chitin synthase genes chs-1 and chs-2 are essential for C.elegans development and responsible for chitin deposition in the eggshell and pharynx, respectively.Dev.Biol.Zhang, Y., Foster, J.M., Nelson, L.S., Ma, D.and Carlow C.K.S.
2005SNAP-tag mediated live cell labeling as an alternative to GFP in anaerobic organismsBioTechniques Regoes A. et al.
2005Specificity changes in the evolution of Type II restriction endonucleases- A Biochemical and bioinformatic analysis of restriction enzymes that recognize unrelated sequencesJ Biol. Chem.Pingoud, V., Sudina, A., Geyer, H., Bujnicki, J.M., Lurz, R., Luder, G., Morgan, R., Kubareva, E., Pingoud, A.
2005Two crystal forms of the restriction enzyme MspI-DNA complex show the same novel structure.Protein Sci.Xu, Q.S., Robert, R.J.and Guo, H.-C.
2005Yersinia pestis outer membrane type III secretion protein YscC: expression, purification, characterization, and induction of specific antiserumProtein Expr. Purif. Goodin, J. L., et al.
2005The mechanisms of intein-mediated protein splicing: variations on a theme.IUBMB LifeMills, K.V.and Perler, F.B.
2005The Wolbachia Genome of Brugia malayi: Endosymbiont Evolution within a Human Pathogenic Nematode.PLoS Biology Foster, J., Ganatra, M., Kamal, Ibrahim, Ware, J., Makarova, K., Ivanova, N., Bhattacharyya, A., Kapatral, V., Kumar, S., Posfai, J., Vincze, T., Ingram, J., Moran, L., Lapidus, A., Omelchenko, M., Kyrpides, N., Ghedin, E., Wang, S., Goltsman, E., Joukov, V., Ostrovskaya, O., Tsukerman, K., Mazur, M., Comb, D., Koonin, E.and Slatko, B.
2005Sau421, a Bcgl-like restriction-modification system encoded by the Staphylococcus aureus quadruple-converting phage phi 42MicrobiologyDempsey, R.M., Carroll, D., Kong, H.M., Higgins, L., Keane, C.T., Coleman, D.C.
2005Self-cleavable stimulus responsive tags for protein purification without chromatographyJ. Am. Chem. SocGe, X., et. al.
2005Recent Advances in Protein Splicing: Manipulating Proteins In Vitro and In Vivo.Curr.Opin.Biotech.Xu, M.Q.and Evans, T.C.Jr.
2005Saccharomyces cerevisiae Ybr004c and its human homologue are required for addition of the second mannose during glycosylphosphatidylinositol precursor assembly.FEBS Journal Fabre, A-L, Orlean, P.and Taron, C.H.
2005Site-specific immobilization of proteins in a microarray using intein-mediated protein splicingBioorg. Med. Chem. Lett.Girish, A., et al.
2005Site-specific DNA-nicking mutants of the heterodimeric restriction endonuclease R.BbvCI.J.Mol.Biol.Heiter, D.F., Lunnen, K.D.and Wilson, G.G.
2005Sequence Specificity and Role of Proximal Amino Acids of the Histone H3 Tail on Catalysis of Murine G9a Lysine 9 Histone H3 Methyltransferase.BiochemistryChin, H.G., Pradhan, M., Esteve, P., Patnaik, D., Evans, T.C.Jr.and Pradhan, S.
2005Single-cell FRET imaging of transferrin receptor trafficking dynamics by Sfp-catalyzed, site-specific protein labelingChem. Biol Yin J. et al.
2005Characterization of the Type III restriction endonuclease PstII from Providencia stuartii.Nucl.Acids Res.Sears, A., Peakman, L.J., Wilson, G.G.and Szczelkun, M.D.
2005Characterization of Two New Aminopeptidases in Escherichia coli.BMC BioinformaticsZheng, Y., Roberts, R.J., Kasif, S.and Guan, C.
2005Characterization of a nucleus-encoded chitinase from the yeast Kluyveromyces lactisAppl. Environ. Microbiol.Colussi, P.A., Specht, C.A. and Taron, C.H.
2005Characterization of a Nucleus-Encoded Chitinase from the Yeast Kluyveromyces lactis.Appl.Environ.Microbiol.Colussi, P.A., Specht, C.A.and Taron, C.H.
2005Co-translational involvement of the chaperonin GroEL in the folding of newly translated polypeptidesJ. Biol. Chem.Ying, B.W., Taguchi, H., Kondo, M. and Ueda, T.
2005Codon-optimized Gaussia luciferase cDNA for mammalian gene expression in culture and in vivo Mol Ther. Tannous, B.A., Kim, D.E., Fernandez, J.L., Weissleder, R. and Breakefield, X.O.
2005Chracterization of a thermostable UvrD helicase and its participation in helicase-dependent amplification.J.Biol.Chem.An.L., Tang, W., Ranalli, T.A., Kim, H-J., Wytiaz, J.and Kong, H.
2005Cleavage of individual DNA strands by the different subunits of the heterodimeric restriction endonuclease BbvCI.J.Mol.Biol.Bellamy, S.R.W., Milsom, S.E., Scott, D.J., Daniels, L.E., Wilson, G.G.and Halford, S.E.
2005A versatile system for the expression of nonmodified bacteriocins inEscherichia coliJ. Appl. Microbiol. Ingham, A.B., et al.
2005A view of consecutive binding events from structures of tetrameric endonuclease SfiI bound to DNA.EMBO J.Vanamee, E.S., Viadiu, H., Kucera, R., Dorner, L., Picone, S., Schildkraut, I.and Aggarwal, A.K.
2005A single catalytic domain of the junction-resolving enzyme T7 endonuclease I is a non-specific nicking endonuclease.Nucl.Acids Res.Guan, C.and Kumar, S.
2005A small-molecule-based approach to sense codon-templated natural-unnatural hybrid peptides. Selective silencing and reassignment of the sense codon by orthogonal reacylation stalling at the single-codon levelJ. Am. Chem. Soc.Sando, S., Kanatani, K., Sato, N., Matsumoto, H. Hohsaka, T. and Aoyama, Y.
2005Analysis and function of prototype foamy virus envelope N glycosylationJ. Virol.  Lüftenegger, D., Picard-Maureau, M., Stanke, N., Rethwilm, A., Lindemann, D.
2005Automated isolation techniques for microalgae, pgs.101-116 in "Algal culturing techniques"Algal culturing techniquesSieracki, M., Poulton, N., Crosbie, N.
2005Alternative luciferase for monitoring bacterial cells under adverse conditions Appl. Environ. Microbiol. Wiles, S., Ferguson, K., Stefanidou, M., Young, D.B. and Robertson, B.D.
2005Alternative luciferase for monitoring bacterial cells under adverse conditions.Appl. Environ. Microbiol.Wiles, S., Ferguson, K., Stefanidou, M., Young, D.B. and Robertson, B.D.
2005Harnessing Inteins for Protein Purification and Characterization.Nucleic Acids and Molecular Biology Chong, S.and Xu.M.Q.
2005How restriction enzymes became the workhorses of molecular biology.PNASRoberts, R.J.
2005Expression of SMAP-29 cathelicidin-like peptide in bacterial cells by intein-mediated systemProtein Expr. Purif.Morassutti, C., et al.
2005Functional analysis of the N- and C-terminus of mammalian G9a histone H3 methyltransferase.Nucl.Acids Res.Esteve, P.O., Patnaik, D., Chin, H.G., Benner, J., Teitell, M.A.and Pradhan, S.
2005Labeling proteins with small molecules by site-specific posttranslational modificationJ Am Chem SocYin J. et al.
2005Kluyveromyces lactis LAC4 promoter variants that lack function in bacteria but retain full function in K. lactisAppl. Environ. Microbiol.Colussi, P.A. and Taron, C.H.
2005Human maintenance DNA (cytosine-5)-methyltransferase and p53 modulate expression of p53-repressed promoters.Proc.Natl.Acad.Sci.USAEsteve, P.O., Chin, H.G.and Pradhan, S.
2005Implications for Switching Restriction Enzyme Specificities from the Structure of BstYI Bound to a BglII DNA SequenceStructureTownson, S.A., Samuelson, J.C., Xu, S.Y.and Aggarwal, A.K.
2005Crystal structure of the restriction-modification system control element C.BclI and mapping of its binding site.StructureSawaya, M.R., Zhu, Z., Fana, M., Chan, S.H., Dabur, R., Xu, S.Y.and Balendiran, G.K.
2005Crystal structures of an intein from the split dnaE gene of Synechocystis sp.PCC6803 reveal the catalytic model of intein without the penultimate histidine and the mechanism of zinc ion inhibition of protein splicing.J.Mol.Biol.Ping, S., Ye, S., Ferrandon, S., Evans, T.C., Xu, M-Q.and Rao, Z.
2005Codon-optimized Gaussia luciferase cDNA for mammalian gene expression in culture and in vivoMol Ther.Tannous, B.A., Kim, D.E., Fernandez, J.L., Weissleder, R., Breakefield, X.O.
2005Covalent immobilization of recombinant fusion proteins with hAGT for single molecule force spectroscopyEur. Biophys. J Kufer S.K. et al.
2005Engineering substrate specificity of O6-alkylguanine-DNA alkyltransferase for specific protein labeling in living cellsChemBioChem Juillerat A. et al.
2005Explosive Lineage-Specific Expansion of the Orphan Nuclear Receptor HNF4 in Nematodes.J Mol Evol.Robinson-Rechavi, M, Maina, C.V., Gissendanner, C.R., Laudet, V., Sluder, A.
2005Development of a minimal cell-free translation system for the synthesis of presecretory and integral membrance proteinsBiotechnol, Prog.Kuruma, Y., Nishiyama, K., Shimizu, Y., Muller, M and Ueda, T.
2005DNA -binding activity of LndI protein and temporal expression of the gene that upregulates landomycin E production in Streptomyces globisporus 1912Microbiology Rebets, Y., et al.
2004Semisynthesis of a segmental isotopically labeled protein splicing precursor: NMR evidence for an unusual peptide bond at the N-extein-intein junctionProc. Natl. Acad. Sci. USARomanelli, A., et al.
2004Segmentally Variable Genes: A new perspective on adaptation.PLoS BiologyZheng, Y., Roberts, R.J., and Kasif, S.
2004Rescue of protein splicing activity from a Magnetospirillum magnetotacticum intein-like element.Biochem.Soc.Trans.Southworth, M.W., Yin, J.and Perler, F.B.
2004Specific and covalent targeting of conjugating and deconjugating enzymes of ubiquitin-like proteinsMol. Cell Biol.Hemelaar, J.et al.
2004Soluble expression and affinity purification of functional domain of human acetylcholine receptor alpha-subunit by the modulation of maltose binding protein.Biotechnol Lett.Li, Z.Y., Li, Y.J., Guo, C.Y., Shi, Y.W., Xu, M-Q., Trommer, W.E.and Yuan, J.M.
2004Site-specific conjugation of oligonucleotides to the C-terminus of recombinant protein by expressed protein ligationBioorg. Med. Chem. Lett.Takeda, S.,et al.
2004Recognition of DNA substrates by T4 polynucleotide kinase.Nucl.Acids Res.Eastberg, J., Pelletier, J.and Stoddard, B.
2004Labeling of fusion proteins with synthetic fluorophores in live cellsPNAS Keppler A. et al.
2004Labeling of fusion proteins of O6-alkylguanine-DNA alkyltransferase with small molecules in vitro and in vivoMethods Keppler A. et al.
2004Intein-mediated fusion expression, high efficient refolding, and one-step purification of gelonin toxin.Protein Expr.Purif.Guo, C.Y., Li, Z., Xu, M.Q., Wise, J.G., Trommer, W.E.and Yuan, J.
2004Producing peptide arrays for epitope mapping by intein-mediated protein ligation.BioTechniquesSun, L., Rush, J., Ghosh, I., Maunus, J.R.and Xu, M.Q.
2004Mutational Analysis of Protein Splicing, Cleavage, and Self-Association Reactions Mediated by the Naturally Split Ssp DnaE Intein.BiochemistryNichols, N.M.and Evans, T.C.Jr.
2004Manipulation of carrier proteins in antibiotic biosynthesisChem. Biol. La Clair, J.J. et al.
2004Specific labeling of cell surface proteins with chemically diverse compoundsJ .Am. Chem. Soc.  George N. et al.
2004The isolation of strand-specific nicking endonucleases from a randomized SapI expression library.Nucl.Acids Res.Samuelson, J.C., Zhu, Z.and Xu, S.Y.
2004The ins and outs of gene expression control.Nat.Biotechnol.Perler, F.B.
2004The first amendment and scientific freedom in the era of bioterrorism.J.Biolaw and BusinessAnton, B.P.
2004Western blot analysis of Src kinase assays using peptide substrates ligated to a carrier protein.BioTechniquesXu, J., Sun, L., Ghosh, I.and Xu, M.-Q.
2004Versatile protein biotinylation strategies for potential high-throughput proteomicsJ Am. Chem. Soc.Lue, R.Y., et al.
2004Transposon-mediated linker insertion scanning mutagenesis of the Escherichia coli McrA endonuclease.J.Bacteriol.Anton, B.P.and Raleigh, E.A.
2004The bacterial catalase from filarial DNA preparations derives from common pseudomonad contaminants and not from Wolbachia endosymbionts.Parasitol.Res.Foster, J., Baldo, L., Blaxter, M., Hendle-Duhrsen, K., Whitton, C., Slatko, B.and Bandi, C
2004Structure of the Q237W mutant of HhaI DNA methyltransferase: An insight into protein-protein interactions.Biol.Chem.Dong, A., Zhou, L., Zhang, X., Stickel, S., Roberts, R.J.and Cheng, X.
2004Structural characterization and comparative phylogenetic analysis of E.coli HemK, a protein (N5)-glutamine methyltransferase.Mol.Microbiol.Yang, Z., Shipman, L., Zhang, M., Anton, B., Roberts, R.J.and Cheng, X.
2004SPR-based interaction studies with small molecular weight ligands using hAGT fusion proteinsAnal. Biochem. Huber W. et al.
2004Synthesis of fluorescently labeled mono- and diprenylated Rab7 GTPaseJ. Am. Chem. Soc.Durek, T., et al.
2004Synthesis and characterization of bifunctional probes for the specific labeling of fusion proteinsBioorg. Med. Chem. Lett. Kindermann M. et al.
2004Substrate specificity and kinetic mechanism of mammalian G9a histone H3 methyltransferase.J.Biol.Chem.Patnaik, D., chin, H.G., esteve, P.O., Benner, J., Jacobsen, S.E.and Pradhan, S.
2004Changing the Enzymatic Activity of T7 Endonuclease by Mutations at the Beta-Bridge Site: Alteration of Substrate Specificity Profile and Metal Ion Requirements by Mutation Distant from the Catalytic Domain.BiochemistryGuan, C., Kumar, S., Kucera, R.and Ewel, A.
2004cDNA cloning and characterization of a secreted luciferase from the luminous Japanese ostracod, Cypridina noctilucaBiosci. Biotechnol. Biochem.Nakajima, Y., Kobayashi, K., Yamagashi, K., Enomoto, T., Ohmiya, Y.
2004 cDNA cloning and characterization of a secreted luciferase from the luminous Japanese ostracod, Cypridinanoctiluca Biosci. Biotechnol. Biochem. Nakajima, Y., Kobayashi, K., Yamagishi, K., Enomoto, T. and Ohmiya, Y.
2004Cofactor-independent Phosphoglycerate Mutase Has an Essential Role in Caenorhabditis elegans and Is Conserved in Parasitic Nematodes.J.Biol.Chem.Zhang, Y., Foster, J.M., Kumar, S., Fougere, M.and Carlow C.K.S.
2004Cloning of the thermostable alpha-amylase gene from Pyrococcus woesei in Escherichia coli: isolation and some properties of the enzymeMol. Biotechnol. Grzybowska, B., Szweda, P. and Synowiecki, J.
2004Cloning of CviPII nicking and modification system from chlorella virus NYs-1 and application of Nt.CviPII in random DNA amplification.Nucl.Acids Res.Chan, S.H., Zhu, Z., Van Etten, J.L.and Xu, S.Y.
2004Cassette-like variation of restriction enzyme genes in Escherichia coli C and relatives.Nucl.Acids Res.Sibley, M.H.and Raleigh, E.A.
2004A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes.Nucleic Acids and Molecular BiologyRoberts, R.J., Belfort, M.et al.
2004A genome sequence survey of the filarial nematode Brugia malayi: repeats, gene discovery, and comparative genomics.Mol.Biochem.Parasitol.Whitton, C., Daub, J., Quail, M., Hall, N., Foster, J., Ware, J., Ganatra, M., Slatko, B., Barrell, B.and Blaxter, M.
2004A bacteriophage-based genetic system for selection of non-splicing inteins.Appl.Environ.Microbiol.Cann, I.K.O., Amaya, K.R., Southworth, M.W.and Perler, F.B.
2004An rxr/usp homolog from the parasite nematode, Dirofilaria immitis.GeneShea, C., Hough, D., Xiao, J., Tzertzinis, G.and Maina, C.V.
2004An improved method for utilization of peptide substrates for antibody characterization and enzymatic assays.J.Immunol.Methods Ghosh, I., Sun, L., Evans, T.C.Jr.and Xu, M.Q.
2004An asymmetric complex of restriction endonuclease MspI on its palindromic DNA recognition site.StructureXu, Q.S., Kucera, R.B., Roberts, R.J.and Guo, H.-C.
2004Comparative Kinetics of Nucleotide Analog Incorporation by Vent DNA Polymerase.J.Biol.Chem.Gardner, A.F., Joyce, C.M.and Jack, W.E.
2004Identifying protein function - a call for community action.PLoS BiologyRoberts, R.J.
2004Human Smp3p adds a fourth mannose to yeast and human glycosylphosphatidylinositol precursors in vivo.J.Biol.Chem.Taron, B.W., Colussi, P.A., Wiedman, J.M., Orlean, P.and Taron, C.H.
2004Helicase-dependent isothermaol DNA amplificationEMBO Rep.Vincent, M., Xu, Y.and Kong, H.
2004Intein-mediated purification of a recombinantly expressed peptideChem Commun (Camb)Pezza, J.A., Allen, K.N. and Tolan, D.R.
2004Intein-mediated fusion expression, high efficient refolding, and one-step purification of gelonin toxinProtein Expr Purif.Guo, C., et al.
2004In vitro semisynthesis and applications of C-terminally modified Rab proteinsMethods Mol Biol.Durek T., Goody R.S and Alexandrov K.
2004First sequenced genome of a parasitic nematode.Trends Parasitol.Ghedin, E., Wang, S., Foster, J.and Slatko, B.
2004Deficiencies in the essential Smp3 mannosyltransferase block glycosylphosphatidylinositol assembly and lead to defects in growth and cell wall biogenesis in Candida albicans.Microbiology Grimme, S.J., Colussi, P.A., Taron,C.H.and Orlean, P.
2004Crystal Structure of BstYI at 1.85 Angstrom Resolution: A Thermophilic Restriction Endonuclease with Overlapping Specificities to BamHI and BglII.J.Molec.Biol.Townson, S.A., Samuelson, J.C., Vanamee, E.S., Edwards, T.A., Escalante, C.R., Xu, S.-Y.and Aggarwal, A.K.
2004Construction of BAC libraries from the parasitic nematode Brugia malayi and physical mapping of the genome of its Wolbachia endosymbiont.Int.J.Parasitol.Foster, J.M., Kumar, S., Ganatra, M.B., Kamal, I.H., Ware, J., Ingram, J., Pope-Chappell, J., Guiliano, D., Whitton, C., Daub, J., Blaxter, M.L.and Slatko, B.E.
2004Expression and function of conserved nuclear receptor genes in Caenorhabditis elegans.Dev.Biol.Gissendanner, C.R., Crossgrove, K., Kraus, K.A., Maina, C.V.and Sluder, A.E.
2004Engineering Strand-specific DNA Nicking Enzymes fro the Type IIS Restriction Endonucleases BsaI, BsmBI and BsmAI.J.Mol.Biol.Zhu, Z., Samuelson, J.C., Zhou, J., Dore, A.and Xu, S.-Y.
2004Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with Chromomethylase3.EMBO J.Lindroth, A.M., Shultis, D., Jasencakova, Z., Fuchs, J., Johnson, L., Scubert, D., Patnaik, D., Pradhan, S., Goodrich, J., Schubert, Il, Jenuwein, T., Khorasanizadeh, S.and Jacobsen, S.E
2003Phosphorylation of eIF4E attenuates its interaction with mRNA 5' cap analogs by electrostatic repulsion: intein-mediated protein ligation strategy to obtain phosphorylated proteinRNAZuberek, J., et al.
2003NEBcutter: A program to cleave DNA with restriction enzymes.Nucl.Acids Res.Vincze, T., Posfai, J.and Roberts, R.J.
2003Protein trans-splicing in transgenic plant chloroplast: Reconstruction of herbicide resistance from split genes.Proc.Natl.Acad.Sci.USA Chin, H.G., Kim, G.D., Marin, I., Mersha, F., Evans, T.C.Jr., Chen, L., Xu, M.-Q.and Pradhan, S.
2003Purification and characterisation of a novel DNA methyltransferase, M.AhdINucleic Acids ResearchMarks, P., McGeehan, J., Wilson, G., Errington, N. and Kneale, G.
2003PspGI, a type II restriction endonuclease from the extreme thermophile Pyrococcus sp.: structural and functional studies to investigate an evolutionary relationship with several mesophilic restriction enzymes.J.Mol.Biol.Pingoud, V., Conzelmann, C., Kinzebach, S., Sudina, A., Metelev, V., Kubareva, E., Bujnicki, J.M., Lurz, R., Luder, G., Xu, S.Y.and Pingoud, A
2003Merging fluorescence resonance energy transfer and expressed protein ligation to analyze protein-protein interactionsAnal. Biochem. Scheibner, K.A., Zhang, Z. and Cole, P.A.
2003Isolation of BsoBI restriction endonuclease variants with altered substrate specificity.J.Mol.Biol.Zhu, Z., Zhou, J., Friedman, A.M.and Xu, S.-Y.
2003Intein-mediated Protein PurificationMethods and Tools in Biosciences and MedicineChong, S.and Perler, F.B.
2003Kinetic analysis of the coordinated interaction of SgrAI restriction endonuclease with different DNA targets.J.Biol.Chem.Hingorani, K.and Bitinaite, J.
2003Mechanistic and mutational studies of Escherichia coli molybdopterin synthase clarify the final step of molybdopterin biosynthesisJ. Biol. Chem. Wuebbens, M. M. and Rajagopalan, K. V.
2003Mammalian DNA (cytosine-5) methyltransferases and their expression.Clin.Immunol.Pradhan, S.and Esteve P.-O.
2003Study of protein splicing and intein-mediated peptide bond cleavage under high-cell-density conditions.Biotechnol.Prog.Sharma, S., Zhang, A., Wang, H., Harcum, S.W.and Chong S.
2003Structure of the large FK506-binding protein FKBP51, an Hsp90-binding protein and a component of steroid receptor complexesProc. Natl. Acad. Sci. USASinars, C.R., et al.
2003The role of C-terminal tyrosine phosphorylation in the regulation of SHP-1 explored via expressed protein ligationJ. Biol. Chem.Zhang, Z., et al.
2003Zinc Ion Effects on Individual Ssp DnaE Intein Splicing Steps: Regulating Pathway Progression.Biochemistry Nichols, N.M., Benner, J.S., Martin, D.D.and Evans, T.C.Jr.
2003Visualization of coupled protein folding and binding in bacteria and purification of the heterodimeric complex.Proc.Natl.Acad.Sci.USA Wang, H.and Chong, S.
2003Structure of Rab GDP-dissociation inhibitor in complex with prenylated YPT1 GTPaseScienceRak, A., et al.
2003Purification of recombinant proteins from E.coli by engineered inteins.Methods Mol.Biol.Xu, M.-Q.and Evans, T.C., Jr.
2003Purification and characterization of the beta-trefoil fold protein barley alpha-amylase/subtilisin inhibitor overexpressed in Escherichia coliProtein Expr. Purif. Bonsager, B.C., et al.
2003REBASE Restriction enzymes and methyltransferases.Nucl.Acids Res.Roberts, R.J., Vincze, T., Posfai, J.and Macelis, D.
2003Semisynthesis and application of carboxyfluorescein-labelled biologically active human interleukin-8Biol. Chem.David, R., et al.
2003Revised Escherichia coli selenocysteine insertion requirements determined by in vivo screening of combinatorial libraries of SECIS variants.Nucl.Acids Res.Sandman, K.E., Tardiff, D.F., Neely, L.A.and Noren, C.J.
2003An aspartate aminotransferase of Wolbachia endobacteria from Onchocerca volvulus is recognized by IgG1 antibodies from residents of endemic areas.Parasitol.Res.Fischer, P., Bonow, I., Buttner, D.W., Kamal, I.H.and Liebau, E.
2003Allosteric Activator Domain of Maintenance Human DNA (Cytosine-5) Methyltransferase and Its Role in Methylation Spreading.BiochemistryPradhan, S.and Esteve P.-O.
2003Assembly of high-affinity insulin receptor agonists and antagonists from peptide building blocksProc. Natl. Acad. Sci. USASchaffer, L., et al.
2003Coevolution of an aminoacyl-tRNA synthetase with its tRNA substratesProc. Natl. Acad. Sci. USASalazar, J.C., et al.
2003Cloning and Biochemical Characterization of Blisterase, a Subtilisin-like Convertase from the Filarial Parasite, Onchocerca volvulus.J.Biol.Chem.Poole, C.B., Jin, J.and McReynolds, L.A.
2003A single surface tryptophan in the chitin-binding domain from Bacillus circulans chitinase A1 plays a pivotal role in binding chitin and can be modified to create an elutable affinity tag.Biochim.Biophys.Acta.Ferrandon, S., Sterzenbach, T., Mersha, F.B.and Xu, M-Q
2003A fluorescence resonance energy transfer sensor for the beta-domain of metallothioneinProc. Natl. Acad. Sci. USAHong, S.H., and Maret, W.
2003A Dual Role for an Aspartic Acid in Glycosylasparaginase Autoproteolysis.StructureQian, X., Guan, C.and Guo, H.-C.
2003A fusion of disciplines: chemical approaches to exploit fusion proteins for functional genomicsChembiochem Johnsson N. and Johnsson K.
2003A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes.Nucl.Acids Res.Roberts, R.J., Belfort, M.et al.
2003A general method for the covalent labeling of fusion proteins with small molecules in vivoNature Biotechnology Keppler A. et al.
2003Generation of an affinity column for antibody purification by intein-mediated protein ligation.J.Immunol.Methods Sun, L., Ghosh, I.and Xu, M.Q.
2003DNA -repair protein hHR23a alters its protein structure upon binding proteasomal subunit S5aProc. Natl. Acad. Sci. USA Walters, K.J., et al.
2003Generation of the R2 subunit of ribonucleotide reductase by intein chemistry: insertion of 3-nitrotyrosine at residue 356 as a probe of the radical initiation process BiochemistryYee, C.S., et al.
2003Induced protein dimerizaton in vivo through covalent labelingJACS Gendreizig, S. et al.
2003Glucocorticoid Receptor-like Zn(Cys)4 Motifs in Bsl I Restriction Endonuclease.J.Mol.Biol.Vanamee, E.S., Hsieh, P.C., Zhu, Z., Yates, D., Garman, E., Xu, S.Y.and Aggarwal, A.K.
2003Directed evolution of O6-alkylguanine-DNA alkyltransferase for efficient labeling of fusion proteins with small molecules in vivoChem. Biol.  Juillerat A. et al.
2003Covalent labeling of fusion proteins with chemical probes in living cellsChimia Gendreizig S. et al.
2003Covalent and selective immobilization of fusion proteinsJACS Kindermann M. et al.
2003Crystal structure of a mini-intein reveals a conserved catalytic module involved in side chain cyclization of asparagine during protein splicing.J.Biol.Chem.Ding, Y., Xu, M.-Q., Ghosh, I., Chen, X., Ferrandon, S., Lesage, G., Rao, Z.
2003Cytosine methylation by the SuaI restriction-modification system: implications for genetic fidelity in a hyperthermophilic archaeon.J.Bacteriol.Grogan, D.W.
2003Crystallization of restriction endonuclease SfiI in complex with DNAActa Crystallogr. D Biol. Crystallogr.Viadiu, H., Vanamee, E.S., Jacobson, E.M., Schildkraut, I. and Aggarawl, A.K.
2006Protein function microarrays based on self-immobilizing and self-labeling fusion proteinsChemBioChem. Sielaff I. et al.
2006Properties of the C-terminal domain of enzyme I of the Escherichia coli phosphotransferase system.J Biol Chem.Patel, H.V., Vyas, K.A., Mattoo, R.L., Southworth M., Perler, F.B., Comb, D.and Roseman, S.
2006Profluorescent protein fragments for fast bimolecular fluorescence complementation in vitroNat. Protoc.Demidov, V.V., and Broude, N.E.
2006Protein function microarrays based on self-immobilizing and self-labeling fusion proteinsChemBioChem.Sielaff I. et al.
2006Reactivity of intein thioesters: appending a functional group to a proteinChembiochem.Kalia, J., et al.
2006Protein splicing mechanisms and applications.IUBMB Life Perler, F.B.
2006Protein splicing in cis and in trans.The Chemical Record Saleh, L.and Perler, F.B.
2006Intein-mediated in vitro synthesis of lipidated Ras proteinsChem. Commun. (Camb)Gottlieb, D., et al.
2006In vivo characterization of the GPI assembly defect in yeast mcd4-174 mutants and bypass of the Mcd4p-dependent step in delta mcd4 cells.FEMS Yeast Res.Wiedman, J.M., Fabre, A-L., Taron, B.W., Taron, C.H.and Orlean, P.
2006In vitro evidence for the dual function of Alg2 and Alg11: essential mannosyltransferases in N-linked glycoprotein biosynthesisBiochemistry O’Reilly, M.K., Zhang, G., Imperiali, B.
2006It Takes Two: Lessons From the First Nematode Wolbachia Genome Sequence.Issues in Infectious DiseasePfarr, K., J.Foster and B Slatko
2006Production and purification of recombinant human glucagons overexpressed as intein fusion protein in Escherichia coliProtein Pept. Lett.Esipov, R.S., et. al.
2006Post-translational covalent labeling reveals heterogeneous mobility of individual G protein-coupled receptors in living cellsChemBioChem Prummer M. et al.
2006LT CI, a novel chymotrypsin inhibitor of the potato I family from the earthworm Lumbricus terrestris. Purification, cDNA cloning, and expressionComp. Biochem. Physiol B. Biochem. Mol. Biol. Wojtaszek, J., et al.
2006Real-time observation of trigger factor function on translating ribosomesNatureKaiser, C.M., Chang, H.C., Agashe, V.R., Lakshmipathy, S.K., Etchells, S.A., Hayer-Hartl, M., Hartl, F.U. and Barral, J.M.
2006The N terminus of GTP gamma S-activated transducin alpha-subunit interacts with the C terminus of the cGMP phosphodiesterase gammasubunitJ. Biol. Chem. Grant, J., et al.
2006Synthesis and evaluation of the bioluminescent activity of (S)-Cypridina luciferin and its analogsTetrahedron LettersWu, C., Kawasaki, K., Ohgiya, S., Ohmiya, Y.
2006 Syntheses and evaluation of the bioluminescent activity of (S)-Cypridina luciferin and its analogs Tetrahedron Letters Wu, C., Kawasaki, K., Ohgiya.S. and Ohmiya, Y.
2006The role of single N-glycans in proteolytic processing and cell surface transport of the Lassa virus glycoprotein.GP-C.Virol. J. Eichler, R., Lenz, O., Garten, W., Strecker, T.
2006Visualizing receptor trafficking in livingPNAS Jacquier V. et al.
2006TspMI, a thermostable isoschizomer of XmaI (5'C/CCGGG3'): characterization and single molecule imaging with DNA.Appl Microbiol.Biotechnol.Parashar, V., Capalash, N., Xu, S.Y., Sako, Y.and Sharma, P.
2006The role of Wolbachia in the biology and pathogenesis of filariasisInsect SymbiosisTurner, J., Foster, J., Ganatra, M., Slatko, B.and Taylor, M.
2006 Self-assembling protein arrays on DNA chips by auto-labeling fusion proteins with a single DNA address Proteomics Jongsma M.A., Litjens R. H.
2006RecJ exonuclease: substrates, products and interaction with SSB.NARHan, E.S., Cooper, D.L., Persky, N.S., Sutera, V.A.Jr., Whitaker, R.D., Montello, M.L.and Lovett, S.T.
2006Semisynthesis and characterization of mammalian thioredoxin reductaseBiochem.Eckenroth, B., et al.
2006Structure and dynamics of the epidermal growth factor receptor C-terminal phosphorylation domainProtein Sci.Lee, N.Y., et al.
2006SmpB triggers GTP hydrolysis of elongation factor Tu on ribosome by compensating for the lack of codon-anticodon interaction during trans-translation initiationJ. Biol. Chem.Shimizu, Y. and Ueda, T.
2006Simultaneous amplification and screening of whole plasmids using the T7 bacteriophage replisome.Nucl.Acids.Res.Xu, Y., Kim, H-J., Kays, A., Rice, J.and Kong, H.
2006Cofactor-independent Phosphoglycerate Mutase is an essential gene in procyclic form Trypanosoma brucei.Parasitol.Res.Djikeng, A., Raverdy, S., Foster, J., Bartholomeu, D., Zhang, Y., El-Sayed, N.and Carlow, C.
2006Cloning of Nt.CviQII nicking endonuclease and its cognate methyltransferase: M.CviQII methylates AG sequences.Protein Expr.Purif.Chan, S.H., Zhu, Z., Van Etten, J.L.and Xu, S.Y.
2006Catalytic properties and kinetic mechanism of human recombinant Lys-9 histone H3 methyltransferase SUV39H1: participation of the chromodomain in enzymatic catalysis.BiochemistryChin, H.G., Patnaik, D., Esteve, P.O., Jacobsen, S.E.and Pradhan.S.
2006Covalent labeling of cell-surface proteins for in vivo FRET studiesFEBS Letters Meyer B.H. et al.
2006Directed evolution of O6-alkylguanine-DNA alkyltransferase for applications in protein labelingProt. Eng. Des. Sel. Gronemeyer T. et al.
2006Direct interaction between DNMT1 and G9a coordinates DNA and histone methylation during replication.Genes & Devel.Esteve, P.O., Chin, H.G., Smallwood, A., Feehery, G.R., Gangisette, O., Karpf, A.R., Carey, M.F.and Pradhan, S.
2006Deglycosylation of the beta1-subunit of the BK channel changes its biophysical propertiesAm. J. Physiol.Cell. Physiol.  Hagen, B.M., Sanders, K.M.
2006A highly sensitive protein-protein interaction assay based onGaussia luciferase Nat. Methods Remy, I. and Michnick, S.W.
2006A highly sensitive protein-protein interaction assay based onGaussia luciferase Nat. Methods Remy, I. and Michnick, S.W.
2006A genetic dissection of the LlaJI restriction cassette reveals insights on a novel bacteriophage resistance system.BMC Microbiol.O'Driscoll, J., Heiter, D.F., Wilson, G.G., Fitzgerald, G.F., Roberts, R.and van Sinderen, D.
2006A highly sensitive protein-protein interaction assay based on Gaussia luciferase.Nat. MethodsRemy. I. and Michnick, S.W.
2006Analysis of one million base pairs of Neanderthal DNANature Green, R.E., Krause, J., Ptak, S.E., Briggs, A.W., Ronan, M.T., Simons, J.F., Du, L., Egholm, M., Rothberg, J.M., Paunovic, M. and Pääbo, S.
2006Alteration of sequence specificity of the type II restriction endonuclease HincII through an indirect readout mechanism.J Biol Chem.Joshi, H.K., Etzkorn, C., Chatwell, L., Bitinaite, J.and Horton, N.C.
2006Adding value to fusion proteins through covalent labeling Curr. Opin. Biotechn. Gronemeyer T. et al.
2006DNA Damage-induced Down-regulation of Human Cdc25C and Cdc2 is Mediated by Cooperation between p53 and Maintenance DNA (Cytosine 5) Methyltransferase 1.J Biol Chem.Le Gac, G., Esteve, P., Ferec, C.and Pradhan, S.
2006FRET imaging reveals that functional neurokinin-1 receptors are monomeric and reside in membrane microdomains of live cellsProc. Natl. Acad. Sci. USA Meyer B.H. et al.
2006Fluorophores for live cell imaging of AGT fusion proteins across the visible spectrumBioTechniques Keppler A. et al.
2006Fluorescence-mediated analysis of mitochondrial preprotein import in vitroAnal. Biochem.  Krayl M. et al.
2006 Genetically Encoded but Nonpolypeptide Prolyl-tRNA Functions in the A Site for SecM-Mediated Ribosomal StallMol. Cell.Muto, H., Nakatogawa, H., and Ito, K.
2006Highly efficient ribosome display selection by use of purified components for in vitro translationJ. Immunol MethodsVillemagne, D., Jackson, R. and Douthwaite, J.A.
2006Heterologous protein production in the yeast Kluyveromyces lactis.FEMS Yeast Res.van Ooyen, A.J.J., Dekker, P., Huang, M., Olsthoorn, M.M.A., Jacobs, D.I., Colussi, P.A.and Taron, C.H.
2006Heterologous protein production in the yeast Kluyveromyces lactis FEMS Yeast Res.Van Ooyen, A.J.J., Dekker, P., Huang, M., Olsthoorn, M.M.A., Jacobs, D.I., Colussi P.A., and Taron, C.H.
2006Engineering a rare-cutting restriction enzyme: genetic screening and selection of NotI variants.NAR Samuelson, J.C., Morgan, R.D., Benner, J.S., Claus, T.E., Packard, S.L.and Xu, S.Y.
2006Enabling Glycosyltransferase Evolution: A Facile Substrate-Attachment Strategy for Phage-Display Enzyme Evolution.Chembiochem.Love K.R., Swoboda J.G., Noren C.J.and Walker, S.
2006DNA nicking by HinP1I endonuclease: bending, base flipping and minor groove expansion.Nucl.Acids.Res.Horton, J.R., Zhang, X., Maunus, R., Yang, Z., Wilson, G.G., Roberts, R.J.and Cheng, X.
2006Evaluation of two novel tag-based labeling technologies for site-specific modification of proteinsInt. J. Biol. Macromol.Tirat A. et al.
2006Expression of N-terminal Cys-protein fragments using an intein refolding strategyBioorg. Med. Chem.Hackenberger, C. P., et. al.
2006Evolving the substrate specificity of O6 alkylguanine DNA alkyltransferase through loop insertion for applications in molecular imagingACS Chem Biol. Heinis C. et al.
2006Evidence supporting a cisi-enedio-based mechanism for Pyrococcus furiousus phophoglucose isomerase.J Mol Biol.Berrisford, J.M., Hounslow, A.M., Akerboom, J., Hagen, W.R., Brouns, S.J., van der Oost, J., Murray, I.A., Michael Blackburn, G., Waltho, J.P., Rice, D.W.and Baker, P.J.
2009Rational Design of a Fusion Partner for Membrane Protein Expression in E.coli.Protein Sci.Luo, J., Choulet, J.and Samuelson, J.C.
2009Rational Engineering of Type II Restriction Endonuclease DNA Binding and Cleavage Specificity.Nucl.Acids.Res.Morgan, R.D.and Luyten, Y.A.
2009Regulation of DNMT1 Stability through SET7-Mediated Lysine Methylation in Mammalian Cells.Proc.Natl.Acad.Sci.Esteve, P.O., Chin, H.G., Benner, J., Feehery, G.R., Samaranayake, M., Horwitz, G.A., Jacobsen, S.E.and Pradhan, S.
2009Profiling the T-cell receptor beta-chain repertoire by massively parallel sequencingGenome Res. Freeman, J.D., Warren, R.L., Webb, J.R., Nelson, B.H. and Holt, R.A.
2009Protein conjugates of SH3-domain ligands and ATP- competitive inhibitors as bivalent inhibitors of protein kinasesChemBioChem. Tivari R. and Parang K.
2009Protein Splicing: A Versatile Tool for Drug Discovery.Adv.Drug Deliv.Rev.Cheriyan, M.and Perler, F.B.
2009Sensitive in vivo imaging of T cells using membrane-bound gaussia princeps luciferaseNat. Med.Santos, E., Yes, R., Lee, J., et al
2009Sensitive in vivo imaging of T cells using membrane-bound gaussia princeps luciferaseNat. Med. Santos, E., Yeh, R., Lee, J., et al.
2009 Sequence-independent and reversible photocontrol of transcription/expression systems using a photosensitive nucleic acid binder Proc. Natl. Acad. Sci.  Estevez-Torres, A., Crozatier, C., Diguet, A., Hara, T., Saito, H., Yoshikawa, K., and Baigl, D.
2009Regulation of endosomal clathrin and retromer-mediated endosome to Golgi retrograde transport by the J-domain protein RME-8.EMBO J.Shi, A., Sun, L., Banerjee, R., Tobin, M.Zhang, Y.and Grant, B.D.
2009Selective cross-linking of interacting proteins using self-labeling tagsJ. Am. Chem. Soc. Gautier A. et al.
2009Semisynthetic fluorescent sensor proteins based on self-labeling protein tagsJ. Am. Chem. Soc. Brun M.A. et al.
2009Prion protein glycosylation is not required for strain-specific neurotropism J Virol.  Piro, J.R., Harris, B.T., Nishina, K., Soto, C., Morales, R., Rees, J.R., Supattapone, S.
2009Illuminating the life of GPCRsCell Commun. Signal Böhme I and Beck-Sickinger A. G.
2009Indo-1 Derivatives for local calcium sensingJACS Chemical Biology Bannwarth et. al.
2009Interleukin-33 is biologically active independently of Caspase-1 cleavage J. Biol. Chem. Talabot-Ayer, D., Lamacchia, C., Gabay, C., and Palmer, G.
2009Identification and characterization of a peptide with affinity to head and neck cancerJ. Nucl. Med.Nothelfer, E.M. et al.
2009Identification of nose-to-brain homing peptide through phage displayPeptidesWan, X.M. et al.
2009Identification of two active functional domains of human adenylate kinase 5FEBS Lett. Solaroli, N., Panayiotou, C., Johansson, M., and Karlsson, A.
2009Neuroprotective secreted amyloid precursor protein acts by disrupting amyloid precursor protein dimersJ. Biol. Chem. Gralle M. et al.
2009New Simulated Annealing Algorithms for Constrained Optimization.Asia-Pacific Journal for Operational ResearchOzdamar, L.and Pedamallu.C.S.
2009Optimization of 454 sequencing library preparation from small amounts of DNA permits sequence determination of both DNA strandsBiotechniques Maricic, T. and Pääbo, S.
2009Lateral transport of smoothened from the plasma membrane to the membrane of the ciliumJ. Cell Biol. Milenkovic L. et al.
2009 The Krüppel-like zinc finger protein Glis3 directly and indirectly activates insulin gene transcription  Nucleic Acids Res. adr, C.E., Hewett, J.W., Breakefield, X.O. and Tannous, B.A.
2009Membrane proteins follow multiple pathways to the basolateral cell surface in polarized epithelial cellsJ. Cell Biol. Farr G. A. et al.
2009"Translational Recoding"The Wiley Encyclopedia of Chemical Biology, Tadhg P.Begley, EdOsborne, E.M.and Noren, C.J.
2009Tuning microbial hosts for membrane protein productionMicrobial Cell Factories Freigassner, M., Pichler, H. and Glieder, A.
2009The Kruppel-like zinc finger protein Glis3 directly and indirectly activates insulin gene transcriptionNucleic Acids Res.Yang, Y., Chang, B.H., Samson, S.L., Li, M.V., Chan, L.
2009The MmeI Family: Type II Restriction-Modificaton Enzymes That Employ Single-Strand Modification for Host Protection.Nucl.Acids.Res.Morgan, R.D., Dwinell, E.A., Bhatia, T.K., Lang, E.M.and Luyten, Y.A.
2009The Wolbachia endosymbiont of Brugia malayi has an active phosphoglycerate mutase: a candidate target for anti-filarial therapies.Parasitol.Res.Foster, J.M., Raverdy, S., Ganatra, M.B., Colussi, P.A., Taron, C.H.and Carlow, C.K.S.
2009Using shotgun sequence data to find active restriction enzyme genesNuc. Acid. Res. Zheng, Y., Posfai, J., Morgan, R. D., Vincze, T., and Roberts, R.J.
2009Visualizing biochemical activities in living cellsNat Chem Biol Johnsson K.
2009Wolbachia lipoprotein stimulates innate and adaptive immunity through toll-like receptors 2 and 6 (TLR2/6) to induce disease manifestations of filariasis.J Biol Chem.Turner, J.D., Langley, R.S., Johnston, K.L., Gentil, K., Ford, L., Wu, B., Graham, M., Sharpley, F., Slatko, B., Pearlman, E.and Taylor, M.J.
2009UHRF1 binds G9a and participates in p21 transcriptional regulation in mammalian cells.Nucl.Acids.Res.Kim, J.K., Estève, P.O., Jacobsen, S.E.and Pradhan, S.
2009Use of intein-mediated protein ligation strategies for the fabrication of functional protein arraysMethods Enzymol.Chattopadhaya, S., et al.
2009Using chemical approaches to study selenoproteins-Focus on thioredoxin reductasesBiochim. Biophys. Acta.Hondal, R. J.
2009The Heme Biosynthetic Pathway of the Obligate Wolbachia Endosymbiont of Brugia malayi as a Potential Anti-filarial Drug Target.PLoS Negl Trop DisWu, B., Novelli, J., Foster, J., Vaisvila, R., Conway, L., Ingram, J., Ganatra, M., Rao, A.U., Hamza, I.and Slatko, B.
2009Site-Specific, covalent labeling of recombinant antibody fragments via fusion to an engineered version of 6-O-alkylguanine DNA alkyltransferaseBioconjug Chem. Kapmeier F. et al.
2009Soluble expression and one-step purification of a neurotoxin Huwentoxin-I in Escherichia coliProtein Expr Purif.Che, N., et. al.
2009Strategies for successful recombinant expression of disulfide bond-dependent proteins in Escherichia coliMicrobial Cell Factoriesde Marco, A.
2009SET7/9 mediated methylation of non-histone proteins in mammalian cells.EpigeneticsPradhan, S., Chin, H.G., Esteve, P.O.and Jacobsen, S.E.
2009Site-specific covalent labeling of proteins inside live cells using small molecule probesBioorg. Med. Chem.Chattopadhaya, S., et al.
2009The complete genome of Teredinibacter turnerae T7901: an intracellular endosymbiont of marine wood-boring bivalves (shipworms).PLoS ONEYang, J.C., Madupu, R., Durkin, A.S., Ekborg, N.A., Pedamallu, C.S., Hostetler, J.B., Radune, D., Toms, B.S., Henrissat, B., Coutinho, P.M., Schwarz, S., Field, L., Trindade-Silva, A.E., Soares, C.A., Elshahawi, S., Hanora, A., Schmidt, E.W., Haygood, M.G., Posfai, J., Benner, J., Madinger, C., Nove, J., Anton, B., Chaudhary, K., Foster, J., Holman, A., Kumar, S., Lessard, P.A., Luyten, Y.A., Slatko, B., Wood, N., Wu, B., Teplitski, M., Mougous, J.D., Ward, N., Eisen, J.A., Badger, J.H.and Distel, D.L.
2009The effect of carbon source on the secretome of Kluyveromyces lactisProteomicsMadinger, C.L., Sharma, S.S., Anton, B.P., Fields, L.G., Cushing, M.L., Canovas, J., Taron, C.H. and Benner, J.S.
2009The effect of carbon source on the secretome of Kluyveromyces lactis.ProteomicsMadinger, C.L., Sharma S.S., Anton, B.P., Fields, L.G., Cushing, M.L., Canovas, J., Taron, C.H., and Benner, J.S.
2009Tag-probe labeling methods for live-cell imaging of membrane proteins Biochim. Biophys. Acta. Uano Y. and Matsuzaki K.
2009Targeting of tumor blood vessels: a phage-displayed tumor-homing peptide specifically binds to matrix metalloproteinase-2-processed collagen IV and blocks angiogenesis in vivoMol. Cancer Res.Mueller, J. et al.
2009The apearance of pyrrolysine in tRNAHis guanylyltransferase by neutral evolution.Proc.Natl.Acad.Sci.USAHeinemann, I.U., O'donoghue, P., Madinger, C., Benner, J., Randau, L., Noren, C.J.and Soll, D.
2009 Development of a dual luciferase TrAC Trends in Analytical Chemistry Roda, A., Guardigli, M., Michelini, E. and Mirasoli, M.
2009Bioluminescence in analytical chemistry and in vivo imagingTrAC Trends in Analytical ChemistryRoda, A., Guardigli, M., Michelini, E., Mirasoli, M.
2009Bioorthogonal Chemistry: Fishing for Selectivity in a Sea of Functionality Angew. Chem. Int. Ed. Sletten E. and Bertozzi C.
2009An efficient method to assemble linear DNA templates for in vitro screening and selection systemsNuc. Acids Res Stein V. and Hollfeder F.
2009 Assessment of therapeutic efficacy and fate of engineered human mesenchymal stem cells for cancer therapy Proc. Natl. Acad. Sci. USA Sasportas, L.S., Kasmieh, R., Wakimoto, H., Hingtgen, S., van de Water, J.A., Mohapatra, G., Figueiredo, J.L., Martuza, R.L., Weissleder, R. and Shah, K.
2009Assessment of therapeutic efficacy and fate of engineered human mesenchymal stem cells for cancer therapyProc. Natl. Acad. Sci. USASasportas, L.S., Kasmieh, R., Wakimoto, H., Hingtgen, S., van de Water, J.A., Mohapatra, G., Figueiredo, J.L., Martuza, R.L., Weissleder, R., Shah, K.
2009Characterization of RimO, a New Member of the Methylthiotransferase Subclass of the Radical SAM Superfamily.BiochemistryLee, K.H., Saleh, L., Anton, B.P., Madinger, C.L., Benner, J.S., Iwig, D.F., Roberts, R.J., Krebs, C., Booker, S.J.
2009Characterization of the Caenorhabditis elegans UDP_Galactopyranose mutase homolog glf-1 reveals an essential role for galactofuranose metabolism in nematode surface coat synthesis.nematode surface coat synthesis.Dev.Biol.Novelli, J.F., Chaudhary, K., Canovas, J., Benner, J., Madinger, C., Kelly, P., Hodgkin, J.and Carlow, C.K.
2009 Centromere assembly requires the direct recognition of CENP-A nucleosomes by CENP-NNat. Cell Biol. Carroll C.W. et al.
2009Centromere-specific assembly of CENP-a nucleosomes is mediated by HJURP Cell Foltz D.R. et al.
2009Characterization and subcellular localization of bacterial flotillin homologueMicrobiology Donovan C. et al.
2009Advances in bioluminescence imaging of live animal modelsCurr Opin BiotechnolDothager, R., Flentie, K., Moss, B., Pan, M.H., Kesarwala, A., Piwnica-Worms, D.
2009A genomescale RNAi screen for Oct4 modulators defines a role of the Paf1 complex for embryonic stem cell identity Cell Stem Cell Ding, L., Paszkowski-Rogacz, M., Nitzsche, A., Slabicki, M.M., Heninger, A.K., de Vries, I., Kittler, R., Junqueira, M., Shevchenko, A., Schulz, H., Hubner, N., Doss, M.X., Sachinidis, A., Hescheler, J., Iacone, R., Anastassiadis, K., Stewart, A.F., Pisabarro, M.T., Caldarelli, A., Poser, I., Theis, M. and Buchholz, F.
2009A genome-scale RNAi screen for Oct4 modulators defines a role of the Pafl complex for embryonic stem cell identity.Cell Stem CellDing, L., Paszkowski-Rogacz, M., Nitzsche, A., Slabicki, M.M., Heninger, A.K., de Vries, I., Kittler, R., Junqueira, M., Shevchenko, A., Schulz, H., Hubner, N., Doss, M.X., Sachinidis, A., Hescheler, J., Iacone, R., Anastassiadis, K., Stewart, A.F., Pisabarro, M.T., Caldarelli. A.. Poser, I., Theis, M. and Buchholz, F
2009A new family of receptor tyrosine kinases with a venus flytrap binding domain in insects and other invertebrates activated by aminoacidsPLoS One Ahier A. et al.
2009A chemical genetic method for generating bivalent inhibitors of protein kinasesJ. Am. Chem. Soc. Hill Z. B.
2009A genetically encoded bioluminescent indicator for the sodium channel activity in living cellsJ. Am. Chem. Soc.Kaihara, A., Sunami, A., Kurokawa, J., Furukawa, T.
2009A genetically encoded bioluminescent indicator for the sodium channel activity in living cellsJ. Am. Chem. Soc. Kaihara, A., Sunami, A., Kurokawa, J. and Furukawa, T.
2009A synthetic peptide mediated actvie targeting of cisplatin liposomes to Tie2 expressing cellsJ. Control Release.Mai, J. et al.
2009"Adenosine Triphosphate Stimulates Aquifex aeolicus MutL Endonuclease Activity"PLoS ONEMauris, J., & Evans, J
2009Advances in bioluminescence imaging of live animal modelsCurr Opin Biotechnol. Dothager, R., Flentie, K., Moss, B., Pan, M.H., Kesarwala, A. and Piwnica-Worms, D.
2009A new member of the Eschericia coli fad regulon: transcriptional regulation of fadM (ybaW) J. Bacteriol. Feng, Y. and Cronan, J. E.
2009A Symbolic Interval Inference Approach for Constraint Satisfaction: Implementation of Kinematics ApplicationsInternational Journal of Operations ResearchPedamallu, C.S.and Ozdamar, L .
2009Fluorescence in living systems: applications in chemical biology Wiley Encyc. of Chem. Biol. Cornish, V. W.
2009Functional interactions between Mldp (LSDP5) and Abhd5 in the control of intracellular lipid accumulation Biol. Chem. Granneman, J.G., Moore, H.P., Mottillo, E.P. and Zhu, Z.J.
2009 Functional interactions between Mldp (LSDP5) and Abhd5 in the control of intracellular lipid accumulation.Biol. ChemGranneman, J.G., Moore, H.P., Mottillo, E.P. and Zhu, Z.
2009Engineering BspQI nicking enzymes and application of N.BspQI in DNA labeling and production of single-strand DNA.Protein Expr.Purif.Zhang, P., Too, P.H., Samuelson, J.C., Chan, S.H., Vincze, T., Doucette, S., Backstrom, S., Potamousis, K.D., Schramm, T.M., Forrest, D., Schwartz, D.C.and Xu, S.Y.
2009Epigenetic mechanisms in mammalsCell Mol Life SciKim, J.K., Samaranayake, M., Pradhan, S
2009Expanding the chemical Biologist's tool kit: chemical labelling strategies and its applications Curr. Med. Chem.  Chattopadhaya S. et al.
2009High-throughput quantitative analysis of plant N-glycan using a DNA sequencer Biochem. Biophys. Res. Commun.  Lee, K.J., Jung, J.H., Lee, J.M,, So, Y., Kwon, O., Callewaert, N., Kang, H.A., Ko, K., Oh, D.B.
2009HTRF: A technology tailored for drug discovery - a review of theoretical aspects and recent applications Curr. Chem. Genomics Degorce F. et al.
2009Human condensin function is essential for centromeric chromatin assembly and proper sister kinetochore orientationPLoS One Samoshkin A. et al.
2009Genetic identification of nascent peptides that induce ribosome stallingJ. Biol. Chem. Tanner, D., Cariello, D., Woolstenhulme, C., Broadbent, M. and Buskirk, A.
2009High-throughput bisulfite sequencing in mammalian genomesMethods Smith, Z.D., Gu, H., Bock, C., Gnirke, A. and Meissner, A.
2009High-throughput quantitative analysis of plant N-glycan using a DNA sequencerBiochem. Biophys. Res. Commun. Lee, K.J., Jung, J.H., Lee, J.M., So, Y., Kwon, O., Callewaert, N., Kang, H.A., Ko, K., Oh, D.B.
2009Effect of temperature-shift strategy on recombinat chymosin of Kluyveromyces LactisHeilongjiang Animal Science and Veterinary MedicineFeng, Z., et al
2009Computational Prediction of Essential Genes in an Unculturable Endosymbiotic Bacterium, Wolbachia of Brugia malayi.BMC Microbiol.Holman, A.G., Davis, P.J., Foster, J.M., Carlow, C.K.S.and Kumar, S.
2009Detection of ligand-induced CNTF receptor dimers in living cells by fluorescence cross correlation spectroscopyBiochim. Biophys. Acta.  Neugart F. et al.
2009ChIP-seq: Using high-throughput sequencing to discover protein-DNA interactionsMethods Schmidt, D., Wilson, M.D. Spyrou, C., Brown, G.D., Hadfield, J. and Odom, D.T.
2009Chromophore-assisted laser inactivation of α- and γ-tubulin SNAP-tag fusion proteins inside living cellsACS Chem. Biol. Keppler A. et al.
2009EcR-B1 and Usp nuclear hormone receptors regulate expression of the VM32E eggshell gene during Drosophila  oogenesis.Dev.Biol.Bernardi, F., Romani, P., Tzertzinis, G., Gargiulo, G.and Cavaliere V.
2009Educational Outreach - Discover the Microbes Within!BioTechniquesWeiner, M.P.and Slatko, B.(eds.)
2009Educational Outreach - Give Students a Taste for Molecular Biology and Tasting PTC: A New Lab with an Old Flavor.BioTechniquesWeiner, M.P.and Slatko, B.(eds.)
2009Direct observation of the nanoscale dynamics of membrane lipids in a living cellNature Eggeling C. et al.
2009DNA Cloning and Engineering by Uracil Excision.Curr.Protoc.Mol.Biol.Bitinaite, J.and Nichols, N.M.
2009E.coli RNase III(E38A) generates discrete-sized products from long dsRNA.RNAXiao, J., Feehery, C.E., Tzertzinis, G.and Maina, C.V.
2008 Ribosomal Synthesis of N-Methyl Peptides  J. Am. Chem. Soc. Subtelny. A. O.,Hartman, M. C. T., and Szostak, J. W.
2008Ribosomal Synthesis of Peptidase-Resistant Peptides Closed by a Nonreducible Inter-Side-Chain BondACS Chem. Biol.  Sako, Y., Goto, Y., Murakami, H., and Suga, H.
2008RimO, a MiaB-like enzyme, methylthiolates the universally conserved Asp88 residue of ribosomal protein S12 in Escherichia coli.Proc Natl Acad Sci.Anton, B.P., Saleh, L., Benner, J.S., Raleigh, E.A., Kasif, S.and Roberts, R.J.
2008Reliability of Cycloplegic Autorefractor Measurements to determine Spherical and Astigmatic Refractive Errors in Young ChildrenJournal of Ophthalmology and Visual SciencePedamallu, S.B., Reddy, K.S., Pedamallu, R.and Pedamallu, C.S.
2008Restriction and modification enzymes and their recognition sequences.Life IlluminatedRoberts, R.J.
2008Ribonucleases.Curr.Protoc.Mol.Biol.Nichols, N.M., and Yue, D.
2008RNA ligases.Curr.Protoc.Mol.Biol.Nichols, N.M., Tabor, S.and McReynolds, L.A.
2008Septin stability and recycling during dynamic structural transitions in cell division and developmentCurrent Biology McMurray, M.A. and Thorner, J.
2008Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning.NatureCokus, S.J., Feng, S., Zhang, X., Chen, Z., Merriman, B., Haudenschild, C.D., Pradhan, S., Nelson, S.F., Pellegrini, M.and Jacobsen, S.E.
2008Sialylation of beta1 integrins blocks cell adhesion to galectin-3 and protects cells against galectin-3-induced apoptosisJ. Biol. Chem. Zhuo, Y., Chammas, R., Bellis, S.L.
2008RNA Polymerases.Curr.Protoc.Mol.Biol.Paschal, B.M., McReynolds, L.A., Noren, C.J.and Nichols, N.M.
2008RNA-Dependent DNA Polymerases.Curr.Protoc.Mol.Biol.Tzertzinis, G., Tabor, S., and Nichols, N.M.
2008 Selective labeling of proteins with chemical probes in living cells Physiology Lin M.Z. and Wang L.
2008MmeI: a minimal Type II restriction-modification system that only modifies one DNA strand for host protection.Nucl.Acids.Res.Morgan, R.D.,  Bhatia, T.K., Lovasco, L.and Davis, T.B.
2008Molecular Mechanism of Drug-Dependent Ribosome Stalling  Mol. Cell. Vazquez-Laslop, N., Thum, C., and Mankin, A.S.
2008Novel endo-alpha-N-acetylgalactosaminidases with broader substrate specificity.GlycobiologyKoutsioulis, D., Landry, D.and Guthrie E.P.
2008Kits and their unique role in molecular biology: a brief retrospective.BioTechniquesWeiner, M.and Slatko, B.
2008Le double jeu de l’épigénétique: Cible et acteur du cancer [Master and servant: epigenetic deregulations as a cause and a consequence of cancer.]Med Sci (Paris)Laget, S.and Defossez, P.A.
2008Mediator links epigenetic silencing of neuronal gene expression with X-linked mental retardation.Mol.CellDing, N., Zhou, H., Esteve, P.O., Chin, H.G., Kim, S., Xu, X., Joseph, S.M., Friez, M.J., Schwartz, C.E., Pradhan, S.and Boyer, T.G.
2008Optical lock-in detection of FRET using synthetic and genetically encoded optical switchesBiophys. J. Mao S. et al.
2008Physical and computational analysis of the yeast Kluyveromyces lactissecreted proteomeProteomicsSwaim, C.L., et al.
2008Physical and computational analysis of the yeast Kluyveromyces lactis secreted proteome.Proteomics Swaim, C., Anton, B., Sharma, S., Taron, C.and Benner, J.
2008Purification of green fluorescent protein using a two-intein systemAppl. Microbiol. Biotechnol.Zhao, Z., et. al.
2008Organelle-specific zinc detection using zinpyr-labeled fusion proteins in live cellsJ. Am. Chem. Soc. Tomat, E. et al.
2008Orthologues of the Drosophila melanogaster E75 molting control gene in the filarial parasites Brugia malayi and Dirofilaria immitis.Mol.Biochem.Parasitol.Crossgrove, K., Maina, C.V., Robinson-Rechavi, M.and Lochner, M.C.
2008Photobleaching-free infrared near-field microscopy localizes molecules in neuronsJ. App. Phys. Generosi J. et al.
2008 Significance of the KLAC1 gene in glucosylceramide production by Kluyveromyces lactisFEMS Yeast ResTakakuwa, N., Oshnishi, M., and Oda, Y.
2008The relative contribution of mannose salvage pathways to glycosylation in PMI-deficient mouse embryonic fibroblast cellsFEBS J.  Fujita, N., Tamura, A., Higashidani, A., Tonozuka, T., Freeze, H.H., Nishikawa, A.
2008The structure of SgrAI bound to DNA; recognition of an 8 base pair target.Nucl.Acids.Res.Dunten, P.W., Little, E.J., Gregory, M.T., Manohar, V.M., Dalton, M., Hough, D., Bitinaite, J., Horton, N.C.
2008The symbiotic relationship between filarial parasitic nematodes and their wolbachia endosymbionts - a resource for a new generation of control measures.SymbiosisGhedin, E., Daehnel, K., Foster, J., Slatko, B.and Lustigman S.
2008The BsaHI restriction-modification system: Cloning, sequencing and characterisation of DNA recognising motifs.BMC Molecular Biology Neely, R.K.and Roberts, R.J.
2008The Caenorhabditis elegans NR4A nuclear receptor is required for spermatheca morphogenesis.Dev.Biol.Gissendanner, C.R., Kelley, K., Nguyen, T.Q., Hoener, M.C., Sluder, A.E.and Maina, C.V.
2008The fidelity Index provides a systematic quantitation of star activity of DNA restriction endonucleases.Nucl.Acids.Res.Wei, H., Therrien, C., Blanchard, A., Guan, S.and Zhu, Z.
2008Tuning Escherichia coli for membrane protein overexpressionPNAS Wagner, S., Klepsch, M., Schlegel, S., Appel, A., Draheim, R., Tarry, M., Hö, M., van Wijk, K.J., Slotboom, D.J., Persson, J.O. and de Gier, J.
2008Variation of acharan sulfate and monosaccharide composition and analysis of neutral N-glycans in African giant snail (Achatina fulica)Glycoconjugate JournalPark, Y., Zhang, Z., Laremore, T.N., Li, B., Sim, J.S., Im, A.R., Ahn, M.Y., Kim, Y.S., Linhardt, R.J., Glycoconj, J.
2008The Wolbachia endosymbiont of Brugia malayi has an active phosphoglycerate mutase: a candidate target for anti-filarial therapiesParasitol. Res. Foster, J.M., Raverdy, S., Ganatra, M.B., Colussi, P.A., Taron, C.H. and Carlow, C.K.S.
2008The Wolbachia endosymbiont of Brugia malayi has an active phosphoglycerate mutase: a candidate target for anti-filarial therapies.Parasitol.Res.Foster, J.M., Raverdy, S., Ganatra, M.B., Colussi, P.A., Taron, C.H.and Carlow, C.K.S.
2008The Wolbachia endosymbiont of Brugia malayi has an active pyruvate phosphate dikinase.Mol.Biochem.Parasitol.Raverdy, S., Foster, J.M., Roopenian, E.and Carlow, C.K.
2008SNAP-tag Technologies: Novel tools to study protein functionNEB Expressions Johnson K.
2008Spectral resolved gene technology for multiplexed bioluminescence and high content screening Anal. Chem. Michelini, E., Cevenini, L., Mezzanote, L., Ablamsky, D., Southworth, T., Branchini, B. and Roda, A.
2008 Stable isotope labeling of protein byKluyveromyces lactis for NMR studyJ. Biomol NMR.Sugiki, T. Shimada, I. and Takahashi H.
2008Simultaneous protein tagging in two colorsChemistry & Biology Schulz C. and Köhn M.
2008Single molecule imaging of full protein synthesis by immobilized ribosomesNuc. Acid. Res.  Uemura, S., Iizuka, R., Ueno, T., Shimizu, Y., Taguchi, H., Ueda, T., Puglisi. J., and Funatsu, T.
2008Single-process expression and purification of multiple recombinant protein through cocultivation and affinity purification.Anal.Biochem.Porte, M.and Chong, S.
2008Structures of the rare-cutting restriction endonuclease NotI reveal a unique metal binding fold involved in DNA binding.StructureLambert, A.R., Sussman, D., Shen, b., Maunus, R., Nix, J., Samuelson, J., Xu, S.Y.and Stoddard, B.L.
2008Tasting Phenylthiocarbamide (PTC): A New Lab With an Old Flavor.Am.Biol.TeacherMerritt, R., Bierwort, L., Slatko, B., Weiner, M., Weiner, E., Ingram, J.and Sciarra, K.
2008Templated protein assembly on micro-contact-printed surface patterns. Use of the SNAP-tag protein functionality LangumuirIversen L. et al.
2008Template-Independent DNA Polymerases.Curr.Protoc.Mol.Biol.Yue, D., Tabor, S.and Nichols, N.M.
2008Subunit-specific surface mobility of differentially labeled AMPA receptor subunitsEur. J. Cell Biol. Kropf M. et al.
2008Targeted nanoparticles for imaging incipient pancreatic ductal adenocarcinomaPLoS Med.Kelly, K.A. et al.
2008Targeting DNA (5)mCpG sites with chimeric endonucleases.Anal.Biochem.Formenkov, A., Too, P.H., Chan, S.H., Vaisvila, R., Cantin, B.A., Mazzola, L., Tam, V.and Xu, S.Y.
2008Intrabodies binding the proline-rich domains of mutant huntingtin increase its turnover and reduce neurotoxicityJ. Neurosci. Southwell, A.L. et al.
2008An interval partitioning algorithm for constraint satisfaction problems, IJMIC special issue on "Nonlinear Optimization with Engineering and Scientific Applications.IJMIC special issue on "Nonlinear Optimization with Engineering and Scientific ApplicationsPedamallu, C.S., Kumar, A., Csendes, T., and Posfai, J.
2008Bacterial species exhibit diversity in their mechanisms and capacity for protein disulfide bond formation.Proc Natl Acad Sci Dutton, R.J., Boyd, D., Berkmen, M.and Beckwith, J.
2008Bioluminescent virion shells; new tools for quantitation of AAV vector dynamics in cells and live animalsGene Ther.Asokan, A., Johnson, J.S., Li, C., Samulski, R.J.
2008An amalgamation of solid phase peptide synthesis and ribosomal peptide synthesisBiopolymersOttesen, J. et al.
2008An efficient on-column expressed protein ligation strategy: application to segmental triple labeling of human apolipoprotein E3Protein Sci. Zhao, W. et al.
2008An engineered protein tag for multiprotein labeling in living cellsChemistry & Biology Gautier A. et al.
2008Branched Activation- and Catalysis-Specific Pathways for Electron Relay to the Manganese/Iron Cofactor in Ribonucleotide Reductase from Chlamydia trachomatis.BiochemistryJiang, W., Saleh, L., Barr, E.W., Xie, J., Gardner, M.M., Krebs, C.and Bollinger, J.M.Jr.
2008Cellular Ser/Thr-kinase assays using generic peptide substrates Curr. Chem. Gen. Adams D. G. et al.
2008Comprehensive Analysis of the Effects of Eschericia coli ORF's on Protein Translation Reaction Molecular & Cellular Proteomics Kazuta, Y., Adachi, J., Matsuura, T., Ono, N., Mori, H. and Yomo T.
2008Construction of intein mediated hGMCSF expression vector and its prufication in Pichia pastorisProtein Exp. Purif.Babu, S.K., et. al.
2008Caged substrates for protein labeling and immobilizationChembiochem Banala J. et al.
2008 Caged substrates for protein labeling and immobilizationChembiochem Banala J. et al.
2008Cell-surface protein-protein interaction analysis with time-resolved FRET and SNAP-tag technologies: application to GPCR oligomerizationNature Methods Maurel D. et al.
2008A codon-optimized luciferase from Gaussia princeps facilitates the in vivo monitoring of gene expression in the model alga Chlamydomonas reinhardtii Curr. Genet. Shao, N. and Bock, R.
2008A codon-optimized luciferase from Caussia princeps facilitates the in vivo monitoring of gene expression in the model alga Chlamydomonas reinhardtii.Curr. Genet.Shao, N. and Bock, R.
2008A comparative study of protein synthesis in in vitro systems: from the prokaryotic reconstituted to the eukaryotic extract-based.BMC Biotechnol.Hillebrecht, J.R.and Chong, S.
200813C-sialic acid labeling of glycans on glycoproteins using ST6Gal-IJ. Am. Chem Soc. Macnaughtan, M.A., Tian, F., Liu, S., Meng, L., Park, S., Azadi, P., Moremen, K.W., Prestegard, J.H.
2008A cell-based luciferase assay amenable to high-throughput screening of inhibitors of arenavirus budding Virology Capul, A.A. and de la Torre, J.C.
2008A cell-based luciferase assay amenable to high-throughput screening of inhibitors of arenavirus budding.VirologyCapul, A.A. and de la Torre, J.C.
2008 A designed protein for the specific and covalent heteroconjugation of biomolecules Bioconj. Chem. Chidley C. et al.
2008Absence of Wolbachia endobacteria in the non-filariid nematodes Angiostrongylus cantonensis and A.costaricensis.Parasites & Vectors Foster, J.M., Kumar, S., Ford, L., Johnston, K.L., Ben, R., Graeff-Teixeira, C.and Taylor, M.J.
2008AGT/SNAP-Tag: A versatile tag for covalent protein labeling from probes and tags to study biomolecular function Ed. Edited by Miller, L. W. Gautier A. et al.
2008AMPA receptor imaging by infrared scanning near-field optical microscopyPhysica Status Solidi C: Current Topics in Solid State Physics Generosi J. et al.
2008A secreted luciferase for ex vivo monitoring of in vivo processesNat. Methods Wurdinger, T., Badr, C., Pike, L., de Kleine, R., Weissleder, R. and Breakefield, X.O. and Tannous, B.A.
2008A secreted luciferase for ex vivo monitoring of in vivo processesNat. MethodsWurdinger, T., Badr, C., Pike, L., de Kleine, R., Weissleder, R., Breakefield, X.O., Tannous, B.A.
2008A target-unrelated peptide in an M13 phage display library traced to an advantageous mutation in the gene II ribosome-binding site.Anal.Biochem.Brammer, L.A., Bolduc, B., Kass, J.L., Felice, K.M., Noren, C.J.and Hall, M.F.
2008Crucial role of aspartic acid at position 265 in the CH2 domain for murine IgG2a and IgG2b Fc-associated effector functions J Immunol. Baudino L, Shinohara Y, Nimmerjahn F, Furukawa J, Nakata M, Martínez-Soria E, Petry F, Ravetch JV, Nishimura S, Izui S.
2008Genome-wide analysis reveals a cell cycle-dependent mechanism controling centromere propagationJ. Cell Biol.Erhardt, S. et al.
2008Glycoengineering of the methylotrophic yeast Hansenula polymorpha for the production of glycoproteins with trimannosyl core N-glycan by blocking core oligosaccharide assembly Biotechnol. J. Oh, D.B., Park, J.S., Kim, M.W., Cheon, S.A., Kim, E.J., Moon, H.Y., Kwon, O., Rhee, S.K., Kang, H.A.
2008Heterologous expression of Mytilus californianus foot protein three (Mcfp-3) in Kluyveromyces lactisPlatko, J.D., et al.Platko, J.D., et al.
2008Expression and purification of BmrI restriction endonucleases and its N-terminal cleavage domain variantsBao, Y., Higgins, Zhang, P., Chan, S.H., Lagaet, S., Sweeney, S., Lunnen, K., Xu, S.Y.
2008Expression of a cytotoxic cationic antibacterial peptide in Escherichia coli using two fusion partnersProtein Exp. Purif.Chen, Y. Q., et. al.
2008Gaussia-luciferase as a sensitive reporter gene for monitoring promoter activity in the nucleus of the green algaChlamydomonas reinhardtii Mol. Genet. Genomics. Ruecker, O., Zillner, K., Groebner-Ferreira, R. and Heitzer, M.
2008HhaI methyltransferase flips its target base out of the DNA helix.Life IlluminatedRoberts, R.J.
2008Improved segmental isotope labeling methods for the NMR study of multidomain or large proteins: application to the RRMs of Npl3p and hnRNP L.J. Mol. Biol.Skrisovska, L. et al.
2008Incidence of occult carcinoma in multinodular goiter using histopathological findings.Internet journal of surgery TMPedamallu, R., Pedamallu, S.B., Rama Rao, K.V., and Pedamallu, C.S.
2008 Inducing efficient cross-priming using antigen-coated yeast particlesJ. Immunother.Howland S.W. et al.
2008HP1-mediated silencing targets Pol II coactivator complexes.Nat Struct Mol Biol.Smallwood, A., Black, J.C., Tanese, N., Pradhan, S.and Carey, M.
2008Identification of GATC- and CCGG-recognizing Type II REases and their putative specificity-determining positions using Scan2S--a novel motif scan algorithm with optional secondary structure constraints.ProteinsNiv, M.Y., Skrabanek, L., Roberts, R.J., Scheraga, H.A.and Weinstein, H.
2008Identification of two catalytic domains in a luciferase secreted by the copepod Gaussia princepsBiochem Biophys Res Commun. Inouye, S. and Sahara, Y.
2008Diffusion and directed movement: in vitro motile properties of fission yeast kinesin-14 Plk1 J. Biol. Chem.  Fururta, K. et al.
2008Direct site-selective covalent protein immobilization catalyzed by a phosphopantetheinyl transferaseJ. Am. Chem. Soc. Wong L. S. et al.
2008Disruption of the OCH1 and MNN1 genes decrease N-glycosylation on glycoprotein expressed inKluyveromyces lactisJ. Biotechnol. Liu, B., Gong, X., Chang, S., Yang, Y., Song, M., Duan, D., Wang, L., Ma, Q., and Wu, J.
2008CXXC domain of human DNMT1 is essential for enzymatic activity.BiochemistryPradhan, M., Estève, P.O., Chin, H.G., Samaranayke, M., Kim, G.D.and Pradhan, S.
2008 Development of a dual-luciferase reporter system for in vivo visualization of MicroRNA biogenesis and posttranscriptional regulation Nucl. Med. Lee, J.Y., Kim, S., Hwang do, W., Jeong, J.M., Chung, J.K., Lee, M.C. and Lee, D.S.J.
2008Development of a dual-luciferase reporter system for in vivo visualization of MicroRNA biogenesis and posttranscriptional regulationNucl. Med.Lee, J.Y., Kim, S., Hwang do, W., Jeong, J.M.,Chung, J.K., Lee, M.C., Lee, D.S.J.
2008DNA damage in preserved specimens and tissue samples: a molecular assessment.Frontiers in Zoology Zimmermann, J., Hajibabaei, M., Blackburn, D.C., Hanken, J., Cantin, E., Posfai, J.and Evans, T.C.
2008Endothelial nitric oxide synthase gene expression during murine embryogenesis: commencement of expression in the embryo occurs with the establishment of a unidirectional circulatory system.Circ Res.Teichert, A.M., Scott, J.A., Robb, G.B., Zhou, Y.Q., Zhu, S.N., Lem, M., Keightley, A., Steer, B.M., Schuh, A.C., Adamson, S.L., Cybulsky, M.I.and Marsden, P.A.
2008 Enzyme catalyzed site-specific protein labeling and cell imaging with quantum dotsChem. Comm. Sunbul M. et al.
2008Epigenetic mechanisms in mammals.Cell Mol.Life Sci.Kim JK, Samaranayake M, Pradhan S.
2008DNA distortion and specificity in a sequence-specific endonuclease.J.Mol.Biol.Babic, A.C., Little, E.J., Manohar, V.M., Bitinaite, J., Horton, N.C.
2008DNA Repair Enzymes.Curr.Protoc.Mol.Biol.Evans, T.C., Jr.and Nichols, N.M.
2008Efficient interval partitioning approach for global optimization.Journal of Global OptimizationPedamallu, C.S., Ozdamar, L., Csendes, T.and Vinko, T.
2007NMR assignment of a KlbA intein precursor from Methanococcus jannaschii.Biomol NMR Johnson, M., Southworth, M.Perler, F.and Wuthrich, K.
2007On the taxonomic status of the intracellular bacterium Wolbachia pipientis: should this species name include the intracellular bacteria of filarial nematodes?Int.J.Syst.Evol.Microbiol.Pfarr, K., Foster, J., Slatko B., Hoerauf, A.and Eisen, J.A.
2007New and easy strategy for cloning, expression, purification, and characterization of the 5S subunit of transcarboxylase from Propionibacterium f. shermaniiPrep. Biochem. Biotechnol.Bhat, R. K. and Berger, S.
2007Mutant torsinA interferes with protein processing through the secretory pathway in DYT1 dystonia cells. Proc. Natl. Acad. Sci. USA.Hewett, J.W., Tannous, B., Niland. B.P., Nery, F.C., Zeng, J., Li, Y. and Breakefield, X.
2007Mutant torsinA interferes with protein processing through the secretory pathway in DYT1 dystonia cells Proc. Natl. Acad. Sci. USA Hewett, J.W., Tannous, B., Niland, B.P., Nery, F.C., Zeng, J., Li, Y. and Breakefield, X.O.
2007Rational design of a chimeric endonuclease targeted to NotI recognition site.Protein Eng Des Sel Zhang, P., Bao, Y., Higgins, L.and Xu, S-Y.
2007Rational manipulation of carrier-domain geometry in nonribosomal peptide synthetasesChemBioChem. Liu E and Bruner S. D.
2007Protein synthesis in liposomes with a minimal set enzymesBiochem. Biophys. Res. Commun.  Murtas, G., Kuruma, Y., Bianchini, P., Diaspro, A., and Luisi, P.L.
2007Phosphatase Assays Using Ligated Phosphoprotein Substrates.Nature Protocols Sun, L., Ghosh, I., Kochinyan, S.and Xu.M.Q.
2007Propagation of centromeric chromatin requires exit from mitosis J. of Cell Bio. Jansen L. et al
2007Molecular Mechanisms of Transactivation and Doxorubicin-mediated Repression of survivin Gene in Cancer Cells.J of Biological ChemistryEsteve, P.O., Chin, H.G.and Pradhan, S.
2007Inducing and sensing protein-protein interactions in living cells by selective cross-linkingAngew Chem. Int. Ed Lemercier, G. et al.
2007Influence of chelate conjugation on a newly identified tumor-targeting peptideJ. Nucl. Med.Mier, W. et al.
2007In vivo translation and stability of trans-spliced mRNAs in nematode embryosMol. Biochem. Parasitol. Cheng, G., Cohen, L., Mikhli, C., Jankowska-Anyszka, M., Stepinski, J., Darzynkiewicz, E. and Davis, R.E.
2007In Vivo characterization of the GPI assembly defect in yeast   mcd4-174 mutants and bypass of the Mcd4-p-dependent step in mcd4∆ cells.FEMS Yeast Res.Wiedman, J.M., Fabre, A-L., Taron, B.W., Taron, C.H.and Orlean, P.
2007In vivo translation and stability of trans-spliced mRNAs in nematode embryos.Mol. Biochem. Parasitol.Cheng, G., Cohen, L., Mikhli, C, Jankowska-Anyszka, M., Stepinski, J., Darzynkiewicz, E. and Davis, R.E
2007Mining predicted essential genes of Brugaria malayi for nematode drug targets.PLoS ONEKumar, S., Chaudhary, K., Foster, J., Novelli, J., Zhang, Y., Wang, S., Spiro, D., Ghedin, E.and Carlow.C.
2007Molecular and biochemical characterization of nematode cofactor independent phosphoglycerate mutases.Mol.Biochem.Parasitol.Raverdy, S., Zhang, Y., Foster, J.and Carlow, C.
2007It Takes Two: Lessons From the First Nematode Wolbachia Genome Sequence.Wolbachia, A Bug's LifePfarr, K., Foster, J.and Slatko, B.
2007 Intein-mediated expression is an effective approach in the study of beta-defensinsBiochem Biophys Res CommunDiao, H., et. al.
2007Intein-mediated peptide arrays for epitope mapping and kinase/phosphatase assaysMethods Mol BiolXu, M.Q., Ghosh, I., Kochinyan, S., Sun, L
2007Uncoupling metallonuclease metal ion binding sites via nudge mutagenesis.J Biol Inorg Chem Papadakos, G.A., Nastri, H., Riggs, P.and Dupureur, C.M.
2007Use of intein-mediated phosphoprotein arrays to study substrate specificity of protein phosphatasesBiotechniquesKochinyan, S., et al.
2007UHRF1 Plays a Role in Maintaining DNA Methylation in Mammalian Cells.ScienceBostick, M., Kim, J.K., Esteve, P-O., Clark, A., Pradhan, S and Jacobsen, S.
2007The level of synthesis and secretion of Gaussia princeps luciferase in transfected CHO cells is heavily dependent on the choice of signal peptideJ. BiotechnolKnappskog, S., Ravneberg, H., Gjerdrum, C., Trosse, C., Stern, B., and Pryme I.F.
2007Tracking of human Y receptors in living cells- A fluorescence approachPeptidesBöhme. et al.
2007Viral oncoproteins target the DNA methyltransferasesOncogeneBurgers, W.A., Blanchon, L., Pradhan, S., de Launoit, Y., Kouzarides, T., Fuks,F.
2007Widespread lateral gene transfer from intracellular bacteria to multicellular eukaryotes.ScienceHotopp, J.C., Clark, M.E., Oliveira, D.C., Foster, J.M., Fischer, P., Torres, M.C., Giebel, J.D., Kumar, N., Ishmael, N., Wang, S., Ingram, J., Nene, R.V., Shepard, J., Tomkins, J., Richards, S., Spiro, D.J., Ghedin, E., Slatko, B., Tettelin, H.and Werren, J.H.
2007Viral oncoproteins target the DNA methyltransferasesOncogeneBurgers, W.A., Blanchon, L., Pradhan, S., de Launoit, Y., Kouzarides, T. and Fuks, F.
2007Use of intein-mediated phosphoprotein arrays to study substrate specificity of protein phosphatases.BioTechniquesKochinyan, S., Sun.L., Ghosh, I., Barshevsky, T., Xu, J.and Xu, M.Q.
2007USER friendly DNA engineering and cloning method by uracil excisionNucl.Acids.Res.Bitinaite, J., Rubino, M., Varma, K.H., Schildkraut, I., Vaisvila, R.and Vaiskunaite, R.
2007Tasting Phenylthiocarbamide (PTC): A New Lab With an Old Flavor.Am.Biol.Teacher Merritt, R., Bierwort, L., Slatko, B., Weiner, M., Weiner, E., Ingram, J.and Sciarra, K.
2007Shining a light on protein expression in living organisms.Nat Chem Biol Perler, F.
2007Sialic acid on herpes simplex virus type 1 envelope glycoproteins is required for efficient infection of cells J. Virol. Teuton, J.R., Brandt, C.R.
2007Selection of restriction endonucleases using artificial cells.Nucl.Acids.Res.Zheng, Y.and Roberts, R.
2007Rebase--enzymes and genes for DNA restriction and modificationNucleic Acids ResRoberts, R.J., Vincze, T., Posfai, J., Macelis, D.
2007Selecting targeting of adenoviral vectors to neural precursor cells in the hippocampus of adult mice: new prospects for in situ gene therapyStem CellsSchmidt, A. et al.
2007Synthesis of Polyester by Means of Genetic Code ReprogrammingChem. Biol. Ohta, A., Murakami, H., Higashimura, E., and Suga, H.
2007Synthetic analogues of glycosylphosphatidylinositol-anchored proteins and their behavior in supported lipid bilayersJ. Am. Chem. Soc. Paulick, M. G., et al.
2007Subtilisin-like proteases in nematodes.Mol.Biochem.Parasitol.Poole, C.B., Jin, J.and McReynolds, L.A.
2007Single M13 bacteriophage tethering and stretching.Proc.Natl.Acad.Sci.USAKhalil, A.S., Ferrer, J.M., Brau, r.R., Kottmann, S.T., Noren, C.J., Lang, M.J.and Belcher, A.M.
2007Solution Structure of a KlbA Intein Precursor from Methanococcus jannaschii.Protein Sci.Johnson, M., Southworth, M., Herrmann, T., Brace, L., Perler, F.and Wuthrich, K.
2007 Cell-free metabolic engineering promotes high-level production of bioactive Gaussia princeps luciferase J. Biotechnol. Goerke, A.R. and Loening, A.M., Gambhir, S.S. and Swartz, J.R.
2007Cellular trafficking of phospholamban and formation of functional sarcoplasmic reticulum during myocyte differentiationAm. J. Physiol. Cell Physiol.  Stenoien D. L. et al.
2007Catalytic domain of restriction endonuclease BmrI as a cleavage module for engineering endonucleases with novel substrate specificities.Nucl.Acids.Res.Chan, S-H, Boa, Y., Ciszak, E., Laget, S.and Xu, S-Y.
2007Authentic interdomain communication in an RNA helicase reconstituted by expressed protein ligation of two helicase domainsFEBS J. Karow, A., et al.