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    YearTitleJournalAuthorsApplication(s)
    2015Developmental exposure to 2,3,7,8-tetrachlorodibenzo-p-dioxin alters DNA methyltransferase (dnmt) expression in zebrafish (Danio rerio)Toxicol Appl PharmacolAluru N, Kuo E, Helfrich LW, Karchner SI, Linney EA, Pais JE, Franks DG
    2015microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach.Parasites & VectorsMacchiaroli, N. et al.
    2015Phylogeny and differentiation of reptilian and amphibian ranaviruses detected in europePLoS OneStöhr AC, López-Bueno A, Blahak S, Caeiro MF, Rosa GM, Alves de Matos AP, Martel A, Alejo A, Marschang RE
    2015Simultaneous generation of many RNA-seq libraries in a single reactionNat MethodsShishkin AA, Giannoukos G, Kucukural A, Ciulla D, Busby M, Surka C, Chen J, Bhattacharyya RP, Rudy RF, Patel MM, Novod N, Hung DT, Gnirke A, Garber M, Guttman M, Livny J
    2015Transcriptional Analysis of Deinococcus radiodurans Reveals Novel Small RNAs That Are Differentially Expressed under Ionizing Radiation.Appl. Environ. Microbiol.Tsai, H.C. et al
    2014A continuous-exchange cell-free protein synthesis system based on extracts from cultured insect cellsPLoS OneStech M, Quast RB, Sachse R, Schulze C, Wüstenhagen DA, Kubick SGlycobiology
    2014A Modified Janus Cassette (Sweet Janus) to Improve Allelic Replacement Efficiency by High-Stringency Negative Selection in Streptococcus pneumoniaePLoS OneLi Y, Thompson CM, Lipsitch MGibson Assembly®
    2014A Modular Plasmid Assembly Kit for Multigene Expression, Gene Silencing and Silencing Rescue in PlantsPLoS OneBinder A, Lambert J, Morbitzer R, Popp C, Ott T, Lahaye T, Parniske MGolden Gate Assembly, DNA Assembly and Cloning
    2014A restriction enzyme-powered autonomous DNA walking machine: its application for a highly sensitive electrochemiluminescence assay of DNANanoscaleYing Chen, Yun Xiang, Ruo Yuan, Yaqin Chai
    2014A robust TALENs system for highly efficient mammalian genome editingSci RepFeng Y, Zhang S, Huang XDNA Assembly and Cloning, Golden Gate Assembly
    2014A semi-synthetic organism with an expanded genetic alphabetNatureMalyshev, D.A., Dhami, K., Lavergne, T., chen, T., Dai, N., Foster, J.M., Correa Jr., I.R. and Romesberg, F.E.
    2014A Simple Isothermal DNA Amplification Method to Screen Black Flies for Onchocerca volvulus InfectionPLoS OneAlhassan A, Makepeace BL, LaCourse EJ, Osei-Atweneboana MY, Carlow CK
    2014A trimeric lipoprotein assists in trimeric autotransporter biogenesis in enterobacteriaJ Biol ChemGrin I, Hartmann MD, Sauer G, Hernandez Alvarez B, Schütz M, Wagner S, Madlung J, Macek B, Felipe-Lopez A, Hensel M, Lupas A, Linke DPhage Display
    2014A versatile system for USER cloning-based assembly of expression vectors for mammalian cell engineeringPLoS OneLund AM, Kildegaard HF, Petersen MB, Rank J, Hansen BG, Andersen MR, Mortensen UHUSER™ Cloning
    2014An RNA aptamer that specifically binds to the glycosylated hemagglutinin of avian influenza virus and suppresses viral infection in cellsPLoS OneKwon HM, Lee KH, Han BW, Han MR, Kim DH, Kim DEGlycobiology
    2014Biomimetic Magnetite Formation From Biocombinatorial Approaches to Mineralization EffectsLangmuirBaumgartner J, Carillo MA, Eckes KM, Werner P, Faivre D.Phage Display
    2014Boronic acid-mediated polymerase chain reaction for gene- and fragment-specific detection of 5-hydroxymethylcytosineNucleic Acids ResZhao C, Wang H, Zhao B, Li C, Yin R, Song M, Liu B, Liu Z, Jiang G
    2014Characterization of cleavage intermediate and star sites of RM.Tth111II.Sci RepZhu, Z., Guan, S., Robinson, D., El Fezzazi, H., Quimby, A. and Xu, S-Y.
    2014Characterization of Family D DNA polymerase from Thermococcus sp. 9°NExtremophilesGreenough L, Menin JF, Desai NS, Kelman Z, Gardner AF
    2014Clathrin-independent pathways do not contribute significantly to endocytic fluxElifeBitsikas V, Corrêa IR, Nichols BJ
    2014Co-evolution between an Endosymbiont and Its Nematode Host: Wolbachia Asymmetric Posterior Localization and AP Polarity EstablishmentPLoS Negl Trop Dis Landmann F, Foster JM, Michalski ML, Slatko BE, Sullivan W
    2014Cofactor-Independent Phosphoglycerate Mutase from Nematodes Has Limited Druggability, as Revealed by Two High-Throughput ScreensPLoS Negl Trop Dis.Crowther, G.J., Booker, M.L., He, M., Li, T., Raverdy, S., Novelli, J.F., He, P., Dale, N.R.G., Fife, A.M., Barker, R.H., Jr., Kramer, M.L., Van Voorhis, W.C., Carlow, C.K.S. and Wang, M-W.
    2014Comparison of Subtypes of Listeria monocytogenes Isolates from Naturally Contaminated Watershed Samples with and without a Selective Secondary EnrichmentPLoS ONEGorski L, Walker S, Liang AS, Nguyen KM, Govoni J, et al.
    2014Consequences of the disease-related L78R mutation for dimerization and activity of STAT3J Cell SciDomoszlai T, Martincuks A, Fahrenkamp D, Schmitz-Van de Leur H, Küster A, Müller-Newen GSNAP Cell, Cellular Analysis
    2014Development of VHH Antibodies against Dengue Virus Type 2 NS1 and Comparison with Monoclonal Antibodies for Use in Immunological DiagnosisPLoS OneFatima A, Wang H, Kang K, Xia L, Wang Y, Ye W, Wang J, Wang X.Phage Display
    2014DevR (DosR) mimetic peptides impair transcriptional regulation and survival of Mycobacterium tuberculosis under hypoxia by inhibiting the autokinase activity of DevS sensor kinaseBMC MicrobiolKaur K, Taneja NK, Dhingra S, Tyagi JSPhage Display
    2014Diversity and Expression of MicroRNAs in the Filarial Parasite, Brugia malayi.PLoS OnePoole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA.
    2014Elimination of inter-domain interactions increases the cleavage fidelity of the restriction endonuclease DraIIIProtein CellZhuo W, Lai X, Zhang L, Chan SH, Li F, Zhu Z, Yang M, Sun D
    2014Engineering Bacterial Transcription Regulation To Create a Synthetic in Vitro Two-Hybrid System for Protein Interaction AssaysJ Am Chem SocZhou Y, Asahara H, Schneider N, Dranchak P, Inglese J, Chong S
    2014Engineering hydrogen gas production from formate in a hyperthermophile by heterologous production of an 18-subunit membrane-bound complexJ Biol ChemLipscomb GL, Schut GJ, Thorgersen MP, Nixon WJ, Kelly RM, Adams MWGibson Assembly®
    2014Engineering nicking enzymes that preferentially nick 5-methylcytosine-modified DNANucleic Acids ResGutjahr A, Xu SYGibson Assembly®
    2014Enhanced gene disruption by programmable nucleases delivered by a minicircle vector.Gene TherA-Bk Dad, S Ramakrishna, M Song, H KimGenome Editing
    2014Epigenetic silencing of apoptosis-inducing gene expression can be efficiently overcome by combined SAHA and TRAIL treatment in uterine sarcoma cellsPLoS OneFröhlich LF, Mrakovcic M, Smole C, Lahiri P, Zatloukal K
    2014Establishment of a CpG island microarray for analyses of genome-wide DNA methylation in Chinese hamster ovary cellsAppl Microbiol BiotechnolWippermann A, Klausing S, Rupp O, Albaum SP, Büntemeyer H, Noll T, Hoffrogge R
    2014Evaluation of fluorophores to label SNAP-tag fused proteins for multicolor single-molecule tracking microscopy in live cellsBosch PJ, Corrêa IR Jr, Sonntag MH, Ibach J, Brunsveld L, Kanger JS, Subramaniam V
    2014Evolution, mechanisms, and applications of intein-mediated protein splicingJ Biol ChemPerler FB, Allewell NM
    2014Expanded genetic codes in next generation sequencing enable decontamination and mitochondrial enrichmentPLoS OneMcKernan KJ, Spangler J, Zhang L, Tadigotla V, McLaughlin S, Warner J, Zare A, Boles RG
    2014Functional characterization improves associations between rare non-synonymous variants in CHRNB4 and smoking behaviorPLoS OneHaller G, Li P, Esch C, Hsu S, Goate AM, Steinbach JHGlycobiology
    2014Fusion of catalytically inactive Cas9 to FokI nuclease improves the specificity of genome modificationNat BiotechnolGuilinger JP, Thompson DB, Liu DRGibson Assembly®
    2014G-CSF does not influence C2C12 myogenesis despite receptor expression in healthy and dystrophic skeletal muscleFront PhysiolWright CR, Brown EL, Della-Gatta PA, Ward AC, Lynch GS, Russell APGlycobiology
    2014Gene and protein sequence optimization for high-level production of fully active and aglycosylated lysostaphin in Pichia pastorisAppl Environ MicrobiolZhao H, Blazanovic K, Choi Y, Bailey-Kellogg C, Griswold KEGlycobiology
    2014Generation of West Nile virus infectious clones containing amino acid insertions between capsid and capsid anchorVirusesVandergaast R, Hoover LI, Zheng K, Fredericksen BLGibson Assembly®
    2014Genome and Metagenome Sequencing: Using the Human Methyl-Binding Domain to Partition Genomic DNA Derived from Plant TissuesApplications in Plant SciencesErbay Yigit, David I. Hernandez, Joshua T. Trujillo, Eileen Dimalanta, and C. Donovan Bailey
    2014Genomics of CpG methylation in developing and developed zebrafishG3 (Bethesda)McGaughey DM, Abaan HO, Miller RM, Kropp PA, Brody LC
    2014Highlights of the DNA cutters: a short history of the restriction enzymesNucleic Acids ResLoenen WA, Dryden DT, Raleigh EA, Wilson GG, Murray NE
    2014Highlights of the DNA cutters: a short history of the restriction enzymes.Nucleic Acids ResLoenen, W.A., Dryden, D.T., Raleigh, E.A., Wilson, G.G., Murray, N.E.Restriction Enzyme Digestion, Restriction Enzyme Digestion
    2014Identification and Biosynthesis of a Novel Xanthomonadin-Dialkylresorcinol-Hybrid from Azoarcus sp. BH72PLoS OneSchöner TA, Fuchs SW, Reinhold-Hurek B, Bode HBGibson Assembly®
    2014Identification and Characterization of a Proteolytically Primed Form of the Murine Coronavirus Spike Proteins after Fusion with the Target CellJ VirolWicht O, Burkard C, de Haan CA, van Kuppeveld FJ, Rottier PJ, Bosch BJGlycobiology
    2014Identification and Characterization of a Suite of Tumor Targeting Peptides for Non-Small Cell Lung CancerSci RepMcGuire MJ, Gray BP, Li S, Cupka D, Byers LA, Wu L, Rezaie S, Liu YH, Pattisapu N, Issac J, Oyama T, Diao L, Heymach JV, Xie XJ, Minna JD, Brown KCPhage Display
    2014Identification and characterization of mutant clones with enhanced propagation rates from phage-displayed peptide librariesAnal BiochemNguyen KT, Adamkiewicz MA, Hebert LE, Zygiel EM, Boyle HR, Martone CM, Meléndez-Ríos CB, Noren KA, Noren CJ, Hall MFPhage Display
    2014Identification and characterization of mutant clones with enhanced propagation rates from phage-displayed peptide librariesAnal BiochemNguyen KT, Adamkiewicz MA, Hebert LE, Zygiel EM, Boyle HR, Martone CM, Meléndez-Ríos CB, Noren KA, Noren CJ, Hall MF
    2014Identification of restriction-modification systems of Bifidobacterium animalis subsp. lactis CNCM I-2494 by SMRT sequencing and associated methylome analysisPLoS OneO'Connell Motherway M, Watson D, Bottacini F, Clark TA, Roberts RJ, Korlach J, Garault P, Chervaux C, van Hylckama Vlieg JE, Smokvina T, van Sinderen D
    2014Impact of a transposon insertion in phzF2 on the specialized metabolite production and interkingdomJ BacteriolPhelan VV, Moree WJ, Aguilar J, Cornett DS, Koumoutsi A, Noble SM, Pogliano K, Guerrero CA, Dorrestein PCGibson Assembly®
    2014Insights into bacterial CO2 metabolism revealed by the characterization of four carbonic anhydrases in Ralstonia eutropha H16AMB ExpressGai CS, Lu J, Brigham CJ, Bernardi AC, Sinskey AJGibson Assembly®
    2014Insights into the initiation of JC virus DNA replication derived from the crystal structure of the T-antigen origin binding domainPLoS PathogMeinke G, Phelan PJ, Kalekar R, Shin J, Archambault J, Bohm A, Bullock PAGibson Assembly®
    2014Integration of growth and patterning during vascular tissue formation in ArabidopsisScienceBert De Rybel, Milad Adibi, Alice S. Breda, Jos R. Wendrich, Margot E. Smit, Ondej Novk, Nobutoshi Yamaguchi, Saiko Yoshida, Gert Van Isterdael, Joakim Palovaara, Bart Nijsse, Mark V. Boekschoten, Guido Hooiveld, Tom Beeckman, Doris Wagner, Karin Ljung, Christian Fleck, Dolf WeijersHigh-Fidelity PCR
    2014Intranasal mRNA nanoparticle vaccination induces prophylactic and therapeutic anti-tumor immunitySci RepPhua KK, Staats HF, Leong KW, Nair SK
    2014Live-cell reporters for fluorescence imagingCurr Opin Chem BiolCorrêa IR Jr.
    2014Loop-mediated isothermal amplification for detection of nucleic acidsCurr Protoc Mol BiolTanner NA, Evans TC Jr.Isothermal Amplification
    2014Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types.ScienceJaitin, DA., Kenigsberg, E., Keren-Shaul, H., Elefant, N., Paul, F., Zaretsky, I., Mildner, A., Cohen, N., Jung, S., Tanay, A. and Amit, I.
    2014MBD4 cooperates with DNMT1 to mediate methyl-DNA repression and protects mammalian cells from oxidative stressEpigeneticsLaget S, Miotto B, Chin HG, Estève PO, Roberts RJ, Pradhan S, Defossez PA
    2014Mediated enrichment of siRNAsMethods in Molecular Biology Jin J., McReynolds L.A. and Gullerova M.
    2014Methyllysine reader plant homeodomain (PHD) finger protein 20-like 1 (PHF20L1) antagonizes DNA (cytosine-5) methyltransferase 1 (DNMT1) proteasomal degradationJ Biol ChemEstève PO, Terragni J, Deepti K, Chin HG, Dai N, Espejo A, Corrêa IR Jr, Bedford MT, Pradhan S
    2014Modification-dependent restriction endonuclease, MspJI, flips 5-methylcytosine out of the DNA helixNucleic Acids ResHorton JR, Wang H, Mabuchi MY, Zhang X, Roberts RJ, Zheng Y, Wilson GG, Cheng X
    2014Modification-dependent restriction endonuclease, MspJI, flips 5-methylcytosine out of the DNA helixNucleic Acids ResearchHorton, J.R., Wang, H., Mabuchi, M.Y., Zhang, X., Roberts, R.J., Zheng, Y., Wilson, G.G., Cheng, X
    2014Modular assembly of designer PUF proteins for specific post-transcriptional regulation of endogenous RNAJ Biol EngAbil Z, Denard CA, Zhao HGolden Gate Assembly, DNA Assembly and Cloning
    2014Molecular evolution of the Yap/Yorkie proto-oncogene and elucidation of its core transcriptional programMol Biol EvolIkmi A, Gaertner B, Seidel C, Srivastava M, Zeitlinger J, Gibson MCGibson Assembly®
    2014Molecular evolution of the Yap/Yorkie proto-oncogene and elucidation of its core transcriptional programMol Biol EvolIkmi A, Gaertner B, Seidel C, Srivastava M, Zeitlinger J, Gibson MCGibson Assembly®
    2014Multiplex genome engineering in human cells using all-in-one CRISPR/Cas9 vector systemSci RepSakuma T, Nishikawa A, Kume S, Chayama K, Yamamoto TGolden Gate Assembly
    2014Mutations in four glycosyl hydrolases reveal a highly coordinated pathway for rhodopsin biosynthesis and N-glycan trimming in Drosophila melanogasterPLoS GenetRosenbaum EE, Vasiljevic E, Brehm KS, Colley NJGlycobiology
    2014Myogenic differential methylation: diverse associations with chromatin structureBiology (Basel)Chandra S, Baribault C, Lacey M, Ehrlich MEpigenetics
    2014Neurospora crassa Female Development Requires the PACC and Other Signal Transduction Pathways, Transcription Factors, Chromatin Remodeling, Cell-To-Cell Fusion, and AutophagyPLoS OneChinnici JL, Fu C, Caccamise LM, Arnold JW, Free SJGibson Assembly®,
    2014Objective: biochemical functionFront GenetAnton BP, Kasif S, Roberts RJ, Steffen M
    2014Ordering of mutations in preinvasive disease stages of esophageal carcinogenesisNat GenetWeaver JM, Ross-Innes CS, Shannon N, Lynch AG, Forshew T, Barbera M, Murtaza M, Ong CA, Lao-Sirieix P, Dunning MJ, Smith L, Smith ML, Anderson CL, Carvalho B, O'Donovan M, Underwood TJ, May AP, Grehan N, Hardwick R, Davies J, Oloumi A, Aparicio S, Caldas C, Eldridge MD, Edwards PA, Rosenfeld N, Tavaré S, Fitzgerald RC; OCCAMS Consortium
    2014Overview of cell-free protein synthesis: historic landmarks, commercial systems, and expanding applicationsCurr Protoc Mol BiolChong S
    2014p19-mediated enrichment and detection of siRNAsMethods Mol BiolJin J, McReynolds LA, Gullerova M
    2014Phosphorylation decreases ubiquitylation of the thiazide-sensitive cotransporter NCC and subsequent clathrin-mediated endocytosisJ Biol ChemRosenbaek LL, Kortenoeven ML, Aroankins TS, Fenton RAGlycobiology
    2014Polynucleotide 3'-terminal phosphate modifications by RNA and DNA ligasesJournal of Biological ChemistryAlexander M. Zhelkovsky and Larry A. McReynolds
    2014Probing homodimer formation of epidermal growth factor receptor by selective crosslinkingEur J Med ChemSun X, Dusserre-Bresson F, Baker B, Zhang A, Xu P, Fibbe C, Noren CJ, Corrêa IR Jr, Xu MQ
    2014Procerain B, a cysteine protease from Calotropis procera, requires N-terminus pro-region for activity: cDNA cloning and expression with pro-sequence.Protein Expr PurifVidhyadhar Nandana, Sushant Singh, Abhay Narayan Singh, Vikash Kumar DubeyHigh-Fidelity PCR
    2014Production of Disulfide-Bonded Proteins in Escherichia coliCurr Protoc Mol BiolKe N, Berkmen M
    2014Prospective identification of parasitic sequences in phage display screensNucleic Acids ResMatochko WL, Cory Li S, Tang SK, Derda RPhage Display
    2014Protein-protein interactions leading to the recruitment of the host DNA sliding clamp by the hyperthermophilic archaeal virus SIRV2J VirolGardner AF, Bell SD, White MF, Prangishvili D, Krupovic M
    2014Protein splicing: how inteins escape from precursor proteinsJ Biol ChemMills KV, Johnson MA, Perler FB
    2014Protein synthesis using a reconstituted cell-free systemCurr Protoc Mol BiolTuckey C, Asahara H, Zhou Y, Chong S
    2014Rapid and Efficient Assembly of Transcription Activator-Like Effector Genes by USER CloningJ Genet GenomicsWang S, Li W, Wang S, Hu BUSER™ Cloning
    2014RNA-RNA Interactions Enable Specific Targeting of Noncoding RNAs to Nascent Pre-mRNAs and Chromatin SitesCellJesse M. Engreitz, Klara Sirokman, Patrick McDonel, Alexander A. Shishkin, Christine Surka, Pamela Russell, Sharon R. Grossman, Amy Y. Chow, Mitchell Guttman, and Eric S. Lander
    2014Role of lipid rafts and GM1 in the segregation and processing of prion proteinPLoS OneBotto L, Cunati D, Coco S, Sesana S, Bulbarelli A, Biasini E, Colombo L, Negro A, Chiesa R, Masserini M, Palestini PGlycobiology
    2014Sequencing of captive target transcripts identifies the network of regulated genes and functions of primate-specific miR-522Cell RepTan SM, Kirchner R, Jin J, Hofmann O, McReynolds L, Hide W, Lieberman J
    2014Serine and proline-rich ligands enriched via phage-display technology show preferential binding to BCR/ABL expressing cellsHematol Oncol Stem Cell TherShires K, Shankland I, Mowla S, Njikan S, Jaymacker J, Novitzky NPhage Display
    2014SpeedyGenes: an improved gene synthesis method for the efficient production of error-corrected, synthetic protein libraries for directed evolutionProtein Eng Des SelCurrin A, Swainston N, Day PJ, Kell DB
    2014Spontaneous in vitro senescence of glioma cells confirmed by an antibody against IDH1R132HAnticancer ResStoczynska-Fidelus E, Och W, Rieske P, Bienkowski M, Banaszczyk M, Winiecka-Klimek M, Zieba J, Janik K, Rosiak K, Treda C, Stawski R, Radomiak-Zaluska A, Piaskowski S
    2014Strand Invasion Based Amplification (SIBA®): A Novel Isothermal DNA Amplification Technology Demonstrating High Specificity and Sensitivity for a Single Molecule of Target AnalytePLoS OneHoser MJ, Mansukoski HK, Morrical SW, Eboigbodin KE
    2014Structural basis for Klf4 recognition of methylated DNANucleic Acids ResearchYiwei Liu, Yusuf Olatunde Olanrewaju, Yu Zheng, Hideharu Hashimoto, Robert M. Blumenthal, Xing Zhang, Xiaodong Cheng
    2014Structure and mutagenesis of the DNA modification-dependent restriction endonuclease AspBHISci RepHorton JR, Nugent RL, Li A, Mabuchi MY, Fomenkov A, Cohen-Karni D, Griggs RM, Zhang X, Wilson GG, Zheng Y, Xu SY, Cheng X
    2014Structure of 5-hydroxymethylcytosine-specific restriction enzyme AbaSI in complex with DNANucleic Acids ResHorton JR, Borgaro JG, Griggs RM, Quimby A, Guan S, Zhang X, Wilson GG, Zheng Y, Zhu Z, Cheng X
    2014Structure of a Naegleria Tet-like dioxygenase in complex with 5-methylcytosine DNANatureHashimoto H, Pais JE, Zhang X, Saleh L, Fu ZQ, Dai N, Corrêa IR Jr, Zheng Y, Cheng X
    2014Structure of the Trehalose-6-phosphate Phosphatase from Brugia malayi Reveals Key Design Principles for Anthelmintic DrugsPLoS PathogFarelli JD, Galvin BD, Li Z, Liu C, Aono M, Garland M, Hallett OE, Causey TB, Ali-Reynolds A, Saltzberg DJ, Carlow CK, Dunaway-Mariano D, Allen KN
    2014The ambrosia symbiosis is specific in some species and promiscuous in others: evidence from community pyrosequencing.ISME JMartin Kostovcik, Craig C Bateman, Miroslav Kolarik, Lukasz L Stelinski, Bjarte H Jordal, Jiri HulcrHigh-Fidelity PCR
    2014The CLO3403/CLO3404 Two-Component System of Clostridium botulinum E1 Beluga Is Important for Cold Shock Response and Growth at Low TemperaturesAppl Environ MicrobiolMascher G, Derman Y, Kirk DG, Palonen E, Lindström M, Korkeala H