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    YearTitleJournalAuthorsApplication(s)
    2010Codon optimization of the calf prochymosin gene and its expression in Kluyveromyces lactisWorld J. Microbiol. Biotechnol.Feng, Z., et al.
    2007It Takes Two: Lessons From the First Nematode Wolbachia Genome Sequence.Wolbachia, A Bug's LifePfarr, K., Foster, J.and Slatko, B.
    2009Fluorescence in living systems: applications in chemical biology Wiley Encyc. of Chem. Biol. Cornish, V. W.
    2010Peptides from phage display library modulate gene expression in mesenchymal cells and potentiate osteogenesis in unicortical bone defectsVis. Exp.Balian, G. et al.Phage Display
    2014Generation of West Nile virus infectious clones containing amino acid insertions between capsid and capsid anchorVirusesVandergaast R, Hoover LI, Zheng K, Fredericksen BLGibson Assembly®
    2011 A reporter system for assaying influenza virus RNP functionality based on secreted Gaussia luciferase activity Virology J. Zhu, W. et al.
    2008A cell-based luciferase assay amenable to high-throughput screening of inhibitors of arenavirus budding Virology Capul, A.A. and de la Torre, J.C.
    2008A cell-based luciferase assay amenable to high-throughput screening of inhibitors of arenavirus budding.VirologyCapul, A.A. and de la Torre, J.C.
    2006The role of single N-glycans in proteolytic processing and cell surface transport of the Lassa virus glycoprotein.GP-C.Virol. J. Eichler, R., Lenz, O., Garten, W., Strecker, T.
    2011Identification and characterization of the cofactor-independent phosphoglycerate mutases of Dirofilaria immitis and its Wolbachia endosymbiont.Veterinary ParasitologyLi.Z., Galvin, B., Raverdy, S.and Carlow, C.K.S.
    1990Antigenic and dynamic properties of the surface of Onchocerca microfilariae.Trop.Med.Parasitol.Edwards, M.K., Busto, P., James, E.R., Carlow, C.K.S., and Philipp, M.
    1998Novel, sensitive and low-cost diagnostic tests for "river blindness" - detection of specific antigens in tears, urine and dermal fluid.Trop.Med.Inter.Health Ngu, J.L., Knenfou, C., Capuli, E., McMoli, T.E., Perler, F., Mbwagbor, J., Tumme, C., Nlatte, O.B., Donfack, J.and Asonganyi, T.
    2004First sequenced genome of a parasitic nematode.Trends Parasitol.Ghedin, E., Wang, S., Foster, J.and Slatko, B.
    2005Mining nematode genome data for novel drug targets.Trends Parasitol.Foster, J.M., Zhang, Y., Kumar, S.and Carlow, C.K.S.
    2002Helminth genomics: from gene discovery to genome sequencing.Trends Parasitol Foster, J.M.and Johnston, D.A.
    1988Type II restriction-modification systems.Trends in Genetics Wilson, G.G.
    2001Nuclear receptors in nematodes: themes and variations.Trends in Genetics Sluder, A.E.and Maina, C.V.
    2010Lighting up multiprotein complexes: lessons from GPCR oligomerizationTrends Biotechnol Ciruela F. et al.
    1984Acetylcholinesterase secreted by intestinal nematodes: a reinterpretation of its putative role of "biochemical holdfast."Trans.Royal Soc Trop.Med.and Hyg.Philipp, M.
    2014Stable cell surface expression of GPI-anchored proteins, but not intracellular transport, depends on their fatty acid structureTrafficJanesh, N. Correa, I.R., Jr. and Watanabe, R.
    2009 Development of a dual luciferase TrAC Trends in Analytical Chemistry Roda, A., Guardigli, M., Michelini, E. and Mirasoli, M.
    2009Bioluminescence in analytical chemistry and in vivo imagingTrAC Trends in Analytical ChemistryRoda, A., Guardigli, M., Michelini, E., Mirasoli, M.
    2015Developmental exposure to 2,3,7,8-tetrachlorodibenzo-p-dioxin alters DNA methyltransferase (dnmt) expression in zebrafish (Danio rerio)Toxicol Appl PharmacolAluru N, Kuo E, Helfrich LW, Karchner SI, Linney EA, Pais JE, Franks DG
    1999A natural example of protein trans-splicing.TIBS Perler, F.B.
    2015Bovine embryo sex determination by multiplex loop-mediated isothermal amplification.TheriogenologyTrisadee Khamlor, Petai Pongpiachan, Rangsun Parnpai, Kanchana Punyawai, Siwat Sangsritavong, Nipa ChokesajjawateeIsothermal Amplification
    2009"Translational Recoding"The Wiley Encyclopedia of Chemical Biology, Tadhg P.Begley, EdOsborne, E.M.and Noren, C.J.
    2013The First Identification and Retrospective Study of Severe Fever With Thrombocytopenia Syndrome in JapanThe Journal of Infectious DiseasesToru Takahashi, Ken Maeda, Tadaki Suzuki, Aki Ishido, Toru Shigeoka, Takayuki Tominaga, Toshiaki Kamei, Masahiro Honda, Daisuke Ninomiya, Takenori Sakai, Takanori Senba, Shozo Kaneyuki, Shota Sakaguchi, Akira Satoh, Takanori Hosokawa, Yojiro Kawabe, Shintaro Kurihara, Koichi Izumikawa, Shigeru Kohno, Taichi Azuma, Koichiro Suemori, Masaki Yasukawa, Tetsuya Mizutani, Tsutomu Omatsu, Yukie Katayama, Masaharu Miyahara, Masahito Ijuin, Kazuko Doi, Masaru Okuda, Kazunori Umeki, Tomoya Saito, Kazuko Fukushima, Kensuke Nakajima, Tomoki Yoshikawa, Hideki Tani, Shuetsu Fukushi, Aiko Fukuma, Momoko Ogata, Masayuki Shimojima, Noriko Nakajima, Noriyo Nagata, Harutaka Katano, Hitomi Fukumoto, Yuko Sato, Hideki Hasegawa, Takuya Yamagishi, Kazunori Oishi, Ichiro Kurane, Shigeru Morikawa, Masayuki Saijo
    1999"Protein Splicing"The Encyclopedia of Molecular BiologyPerler, F.B., Xu, M.and Noren, C.J.
    2006Protein splicing in cis and in trans.The Chemical Record Saleh, L.and Perler, F.B.
    2006 Syntheses and evaluation of the bioluminescent activity of (S)-Cypridina luciferin and its analogs Tetrahedron Letters Wu, C., Kawasaki, K., Ohgiya.S. and Ohmiya, Y.
    2006Synthesis and evaluation of the bioluminescent activity of (S)-Cypridina luciferin and its analogsTetrahedron LettersWu, C., Kawasaki, K., Ohgiya, S., Ohmiya, Y.
    1997Discovery and Uses of Novel GlycosidasesTechniques in GlycobiologyWong-Madden, S.T., Landry, D., and Guthrie, E.P. Glycobiology
    1998Discovery and Uses of Novel GlycosidasesTechniques in GlycobiologyWong-Madden, S.T., Landry, D., and Guthrie, E.P.
    2008The symbiotic relationship between filarial parasitic nematodes and their wolbachia endosymbionts - a resource for a new generation of control measures.SymbiosisGhedin, E., Daehnel, K., Foster, J., Slatko, B.and Lustigman S.
    2010The Wolbachia endosymbiont as an anti-filarial nematode target.SymbiosisSlatko, B.E., Taylor, M.J.& Foster, J.M.
    2012Targeted genome enrichment for efficient purification of endosymbiont DNA from host DNASymbiosisGeniez, S., Foster, J.M., Kumar, S., Moumen, B., Leproust, E., Hardy, O., Guadalupe, M., Thomas, S.J., Boone, B., Hendrickson, C., Bouchon, D., Greve, P and Slatko, B.E.
    2016Characterization of innate immunity genes in the parasitic nematode Brugia malayiSymbiosisLibro, S., Slatko, B.E. and Foster, J.M.
    2010Unusual target site disruption by the rare-cutting HNH restriction endonuclease PacIStructure Shen, B.W., Heiter, D.F., Chan, S.H., Wang, H., Xu, S.Y., Morgan, R.D., Wilson, G.G. and Stoddard, B.L.
    1994Structure of restriction endonuclease BamHI phased at 1.95 A resolution by MAD analysis.StructureNewman, M., Strzelecka, T., Dorner, L.F., Schildkraut, I., and Aggarwal, A.K.
    1995Crystal structure of endo-beta-N-acetylglucosaminidase H at 1.9 A resolution: active-site geometry and substrate recognition.StructureRao, V., Guan, C., and Van Roey, P.
    2001Restriction enzyme BsoBI-DNA complex: a tunnel for recognition of degenerate DNA sequences and potential histidine catalysis.Structurevan der Woerd, M.J., Pelletier, J.J., Xu, S.and Friedman, A.M.
    2002Structure of a tRNA Repair Enzyme and Molecular Biology Workhorse: T4 Polynucleotide Kinase.StructureGalburt, E.A., Pelletier, J., Wilson, G.and Stoddard, B.L.
    2003A Dual Role for an Aspartic Acid in Glycosylasparaginase Autoproteolysis.StructureQian, X., Guan, C.and Guo, H.-C.
    2004An asymmetric complex of restriction endonuclease MspI on its palindromic DNA recognition site.StructureXu, Q.S., Kucera, R.B., Roberts, R.J.and Guo, H.-C.
    2005Crystal structure of the restriction-modification system control element C.BclI and mapping of its binding site.StructureSawaya, M.R., Zhu, Z., Fana, M., Chan, S.H., Dabur, R., Xu, S.Y.and Balendiran, G.K.
    2005Implications for Switching Restriction Enzyme Specificities from the Structure of BstYI Bound to a BglII DNA SequenceStructureTownson, S.A., Samuelson, J.C., Xu, S.Y.and Aggarwal, A.K.
    2008Structures of the rare-cutting restriction endonuclease NotI reveal a unique metal binding fold involved in DNA binding.StructureLambert, A.R., Sussman, D., Shen, b., Maunus, R., Nix, J., Samuelson, J., Xu, S.Y.and Stoddard, B.L.
    2007Selecting targeting of adenoviral vectors to neural precursor cells in the hippocampus of adult mice: new prospects for in situ gene therapyStem CellsSchmidt, A. et al.
    2010Open source tool for prediction of genome wide protein-protein interaction network based on ortholog information.Source Code for Biology and Medicine Pedamallu, C.and Posfai, J.
    2010Gene synthesis of the bovine prochymosin gene and high-level expression in Kluyvermyces lactisSheng Wu Gong Cheng Xue BaoYuan W, et al.
    2016Epidemiological typing of Neisseria gonorrhoeae and detection of markers associated with antimicrobial resistance directly from urine samples using next generation sequencingSex. Transm. InfectGraham, R.M.A. et al.
    2013Massively parallel characterization of restriction endonucleasesScopusKamps-Hughes, N., Quimby, A., Zhu, Z., Johnson, E.A.
    2002Inteins in microbial genomes: distribution, mechanism and function.Scientific World Journal 2Southworth, M.W.and Perler, F.B.
    2016Advanced uracil DNA glycosylase-supplemented real-time reverse transcription loop-mediated isothermal amplification (UDG-rRT-LAMP) method for universal and specific detection of Tembusu virusScientific ReportsTang Y, Chen H, Diao Y
    2010Frequent mutations of chromatin remodeling gene ARID1A in ovarian clear cell carcinomaScience  Jones, S., Wang, T.-L., Shih, Ie-M., et al
    2011A Radically Different Mechanism for S-Adenosylmethionine-Dependent Methyltransferases.Science ExpressGrove, T.L., Benner, J.S., Radle, M.I., Ahlum, J.H., Landgraf, B.J., Krebs, C.and Booker, S.J.
    2002Modulation of postendocytic sorting of G protein-coupled receptorsScience Whistler, J.L., Enquist, J., Marley, A., Fong, J., Gladher, F., Tsuruda, P., Murray, S.R., Von Zastrow, M.
    2011Ordered and dynamic assembly of single spliceoseomsScience Hoskins, A. et al.
    1995Structure of BamHI endonuclease bound to DNA: partial folding and unfolding on DNA binding.ScienceNewman, M., Strzelecka, T., Dorner, L.F., Schildkraut, I., and Aggarwal, A.K.
    2001Information access.Building a "GenBank" of the published literature.ScienceRoberts, R.J., Varmus, H.D., Ashburner, M., Brown, P.O., Eisen, M.B., Khosla, C., Kirschner, M., Nusse, R., Scott, M.and Wold, B.
    2001The sequence of the human genomeScienceVenter, J.C., Roberts, R.J.et al.
    2003Structure of Rab GDP-dissociation inhibitor in complex with prenylated YPT1 GTPaseScienceRak, A., et al.
    2007Draft Genome of the Filarial Parasite Brugia malayi.ScienceGhedin E, Wang S, Spiro D, Caler E, Zhao Q, Crabtree J, Allen JE, Delcher AL, Guiliano DB, Miranda-Saavedra D, Angiuoli SV, Creasy T, Amedeo P, Haas B, El-Sayed NM, Wortman JR, Feldblyum T, Tallon L, Schatz M, Shumway M, Koo H, Salzberg SL, Schobel S, Pertea M, Pop M, White O, Barton GJ, Carlow CK, Crawford MJ, Daub J, Dimmic MW, Estes CF, Foster JM, Ganatra M, Gregory WF, Johnson NM, Jin J, Komuniecki R, Korf I, Kumar S, Laney S, Li BW, Li W, Lindblom TH, Lustigman S, Ma D, Maina CV, Martin DM, McCarter JP, McReynolds L, Mitreva M, Nutman TB, Parkinson J, Peregrín-Alvarez JM, Poole C, Ren Q, Saunders L, Sluder AE, Smith K, Stanke M, Unnasch TR, Ware J, Wei AD, Weil G, Williams DJ, Zhang Y, Williams SA, Fraser-Liggett C, Slatko B, Blaxter ML, Scott AL.
    2007UHRF1 Plays a Role in Maintaining DNA Methylation in Mammalian Cells.ScienceBostick, M., Kim, J.K., Esteve, P-O., Clark, A., Pradhan, S and Jacobsen, S.
    2007Widespread lateral gene transfer from intracellular bacteria to multicellular eukaryotes.ScienceHotopp, J.C., Clark, M.E., Oliveira, D.C., Foster, J.M., Fischer, P., Torres, M.C., Giebel, J.D., Kumar, N., Ishmael, N., Wang, S., Ingram, J., Nene, R.V., Shepard, J., Tomkins, J., Richards, S., Spiro, D.J., Ghedin, E., Slatko, B., Tettelin, H.and Werren, J.H.
    2009Comprehensive mapping of long range interactions reveals folding principles of the human genomeScienceLieberman-Aiden E., van Berkum N., Williams L., Imakaev M., Ragoczy T., Telling A., Amit I., Lajoie B., Sabo P., Dorschner M., Sandstrom R., Bernstein B., BenderM. A., Groudine M., Gnirke A., Stamatoyannopoulos J., Mirny L., Lander E., Dekker J. Epigenetics
    2011Expanding the genetic code of Escherichia coli with PhosphoserineSciencePark, H.S., Hohn, M.J., Umehara, T., Guo. L.T., Osborne, E.M., Benner, J., Noren, C.J., Rinehart, J. and Soll, D.
    2013The Xist lncRNA exploits three-dimensional genome architecture to spread across the X chromosomeScienceEngreitz JM, Pandya-Jones A, McDonel P, Shishkin A, Sirokman K, Surka C, Kadri S, Xing J, Goren A, Lander ES, Plath K, and Guttman M
    2014Integration of growth and patterning during vascular tissue formation in ArabidopsisScienceBert De Rybel, Milad Adibi, Alice S. Breda, Jos R. Wendrich, Margot E. Smit, Ondej Novk, Nobutoshi Yamaguchi, Saiko Yoshida, Gert Van Isterdael, Joakim Palovaara, Bart Nijsse, Mark V. Boekschoten, Guido Hooiveld, Tom Beeckman, Doris Wagner, Karin Ljung, Christian Fleck, Dolf WeijersHigh-Fidelity PCR
    2014Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types.ScienceJaitin, DA., Kenigsberg, E., Keren-Shaul, H., Elefant, N., Paul, F., Zaretsky, I., Mildner, A., Cohen, N., Jung, S., Tanay, A. and Amit, I.
    2015Stem cells. Asymmetric apportioning of aged mitochondria between daughter cells is required for stemnessScienceP, Katajisto., Dohla, J., Chaffer, CL., Pentinmikko, N., Marjanovic, N., Igbal, S., Zoncu, R., Chen, W., Weinberg, RA., Sabatini, DM.SNAP Cell
    2016Reminder to deposit DNA sequencesPublicationScience Blaxter, M., Danchin, A., Savakis, B., Fukami-Kobayashi, K., Kurokawa, K., Sugano, S., Roberts, R.J., Salzberg, S.L. and Wu, C.I.
    2015Label-free single-cell protein quantification using a drop-based mix-and-read system.Sci. Rep.Abbaspourrad A, Zhang H, Tao Y, Cui N, Asahara H, Zhou Y, Yue D, Koehler SA, Ung LW, Heyman J, Ren Y, Ziblat R, Chong S, Weitz DA.
    2015Environmental marine pathogen isolation using mesocosm culture of sharpsnout seabream: striking genomic and morphological features of novel Endozoicomonas sp.Sci Rep.Katharios, P. et al.
    2016AnnoTALE: bioinformatics tools for identification, annotation, and nomenclature of TALEs from Xanthomonas genomic sequences.Sci Rep.Grau, J., Reschke, M., Erkes, A., Streubel, J., Morgan, R.D., Wilson, G.G., Koebnik, R. and Boch, J.
    2016Genomic study of the Ket: a PaleoEskimo-related ethnic group with significant ancient North Eurasian ancestry.Sci Rep.Flegontov, P. et al.
    2016Metagenomic analysis of bloodstream infections in patients with acute leukemia and therapy induced neutropenia.Sci Rep.Gyarmati, P. et al.
    2016The Microbiome of Aseptically Collected Human Breast Tissue in Benign and Malignant DiseaseSci Rep.Hieken, T.J. et al.
    2014A robust TALENs system for highly efficient mammalian genome editingSci RepFeng Y, Zhang S, Huang XDNA Assembly and Cloning, Golden Gate Assembly
    2014Characterization of cleavage intermediate and star sites of RM.Tth111II.Sci RepZhu, Z., Guan, S., Robinson, D., El Fezzazi, H., Quimby, A. and Xu, S-Y.
    2014Identification and Characterization of a Suite of Tumor Targeting Peptides for Non-Small Cell Lung CancerSci RepMcGuire MJ, Gray BP, Li S, Cupka D, Byers LA, Wu L, Rezaie S, Liu YH, Pattisapu N, Issac J, Oyama T, Diao L, Heymach JV, Xie XJ, Minna JD, Brown KCPhage Display
    2014Intranasal mRNA nanoparticle vaccination induces prophylactic and therapeutic anti-tumor immunitySci RepPhua KK, Staats HF, Leong KW, Nair SK
    2014Multiplex genome engineering in human cells using all-in-one CRISPR/Cas9 vector systemSci RepSakuma T, Nishikawa A, Kume S, Chayama K, Yamamoto TGolden Gate Assembly
    2014Structure and mutagenesis of the DNA modification-dependent restriction endonuclease AspBHISci RepHorton JR, Nugent RL, Li A, Mabuchi MY, Fomenkov A, Cohen-Karni D, Griggs RM, Zhang X, Wilson GG, Zheng Y, Xu SY, Cheng X
    2014Validation of microinjection methods for generating knockout mice by CRISPR/Cas-mediated genome engineeringSci RepHorii T, Arai Y, Yamazaki M, Morita S, Kimura M, Itoh M, Abe Y, Hatada IGibson Assembly®
    2015A simple bridging flocculation assay for rapid, sensitive and stringent detection of gene specific DNA methylationSci RepWee E., Ngo T., Trau M.Epigenetics, DNA Enrichment
    2015Insulin-like factor regulates neural induction through an IGF1 receptor-independent mechanism.Sci RepHaramoto Y., Takahashi S., Oshima T., Onuma Y., Ito Y., Asashima M.
    2016A mix-and-read drop-based in vitro two-hybrid method for screening high-affinity peptide binders.Sci RepCui, N., Zhang, H., Schneider, N., Tao, Y., Asahara, H., Sun, Z., Cai, Y., Koehler, S.A., de Greef, T.F., Abbaspourrad, A., Weitz, D.A. and Chong, S.
    2016Expression and purification of the modification-dependent restriction enzyme BisI and its homologous enzymesSci RepXu, S.Y., Klein, P., Degtyarev, S.K.h. and Roberts, R.J.
    2003Phosphorylation of eIF4E attenuates its interaction with mRNA 5' cap analogs by electrostatic repulsion: intein-mediated protein ligation strategy to obtain phosphorylated proteinRNAZuberek, J., et al.
    2009E.coli RNase III(E38A) generates discrete-sized products from long dsRNA.RNAXiao, J., Feehery, C.E., Tzertzinis, G.and Maina, C.V.
    2010Optimization of enzymatic reaction conditions for generating representative pools of cDNA from small RNA.RNAMunafo, D.and Robb, B.
    2015Rapid isolation and single-molecule analysis of ribonucleoproteins from cell lysate by SNAP-SiMPullRNAMargaret L Rodgers, Joshua Paulson, Aaron A HoskinsSNAP Surface, SNAP Cell
    2015Selective expression of sense and antisense transcripts of the sushi-ichi-related retrotransposon - derived family during mouse placentogenesis.RetrovirologyChristine Henke, Pamela L Strissel, Maria-Theresa Schubert, Megan Mitchell, Claus C Stolt, Florian Faschingbauer, Matthias W Beckmann, Reiner StrickHigh-Fidelity PCR
    2011Uptake of radiolabeled GlcNAc into Saccharomyces cerevisiae via native hexose transporters and its in vivo incorporation into GPI precursors in cells expressing heterologous GlcNAc kinase.REMS Yeast ResScarcelli, J.J., Colussi, P.A., Fabre, A.L., Boles, E., Orlean, P.and Taron, C.H.
    2010Secretory production of recombinant proteins in Escherichia coliRecent Patents on BiotechnologyYoon, S.H., Kim, S.K., and Kim J.F.
    2008Physical and computational analysis of the yeast Kluyveromyces lactis secreted proteome.Proteomics Swaim, C., Anton, B., Sharma, S., Taron, C.and Benner, J.
    2008Physical and computational analysis of the yeast Kluyveromyces lactissecreted proteomeProteomicsSwaim, C.L., et al.
    2008Two-dimensional gel-based approaches for the assessment of N-Linked and O-GlcNAc glycosylation in human and simian immunodeficiency virusesProteomicsGraham, D.R., Mitsak, M.J., Elliott, S.T., Chen, D., Whelan, S.A., Hart, G.W., Van Eyk, J.E. Glycobiology
    2009The effect of carbon source on the secretome of Kluyveromyces lactisProteomicsMadinger, C.L., Sharma, S.S., Anton, B.P., Fields, L.G., Cushing, M.L., Canovas, J., Taron, C.H. and Benner, J.S.