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    YearTitleJournalAuthorsApplication(s)
    2003Zinc Ion Effects on Individual Ssp DnaE Intein Splicing Steps: Regulating Pathway Progression.Biochemistry Nichols, N.M., Benner, J.S., Martin, D.D.and Evans, T.C.Jr.
    2001Zinc Inhibition of Protein trans-Splicing and Identification of Regions Essential for Splicing and Association of a Split Intein.J.Biol.Chem.Ghosh, I., Sun, L.and Xu, M.Q.
    2005Yersinia pestis outer membrane type III secretion protein YscC: expression, purification, characterization, and induction of specific antiserumProtein Expr. Purif. Goodin, J. L., et al.
    2011YaeJ is a novel ribosome-associated protein inEscherichia coli that can hydrolyze peptidyl-tRNA on stalled ribosomes Nucleic Acids Res.  Handa, Y., Inaho, N. and Nameki, N.
    1993Workshop of DNA Probes and PCR for Detection of Filarial Parasies in VectorsWilliams, S.A.
    2009Wolbachia lipoprotein stimulates innate and adaptive immunity through toll-like receptors 2 and 6 (TLR2/6) to induce disease manifestations of filariasis.J Biol Chem.Turner, J.D., Langley, R.S., Johnston, K.L., Gentil, K., Ford, L., Wu, B., Graham, M., Sharpley, F., Slatko, B., Pearlman, E.and Taylor, M.J.
    1999Wolbachia genomes and the many faces of symbiosis.Parasitology Today Bandi, C., Slatko, B.and O'Neill, S.L.
    2014Wolbachia endosymbionts and human disease controlMol. Biochem. Parasitol.Slatko, B. E., Luck, A. N., Dobson, S. L. and Foster, J. M.
    2014Wilms tumor protein recognizes 5-carboxylcytosine within a specific DNA sequenceGenes DevHashimoto H, Olanrewaju YO, Zheng Y, Wilson GG, Zhang X, Cheng X
    2007Widespread lateral gene transfer from intracellular bacteria to multicellular eukaryotes.ScienceHotopp, J.C., Clark, M.E., Oliveira, D.C., Foster, J.M., Fischer, P., Torres, M.C., Giebel, J.D., Kumar, N., Ishmael, N., Wang, S., Ingram, J., Nene, R.V., Shepard, J., Tomkins, J., Richards, S., Spiro, D.J., Ghedin, E., Slatko, B., Tettelin, H.and Werren, J.H.
    2014Whole-genome haplotyping using long reads and statistical methods.Nature BiotechnologyKuleshov, K. et al.
    2004Western blot analysis of Src kinase assays using peptide substrates ligated to a carrier protein.BioTechniquesXu, J., Sun, L., Ghosh, I.and Xu, M.-Q.
    2006Visualizing receptor trafficking in livingPNAS Jacquier V. et al.
    2009Visualizing biochemical activities in living cellsNat Chem Biol Johnsson K.
    2003Visualization of coupled protein folding and binding in bacteria and purification of the heterodimeric complex.Proc.Natl.Acad.Sci.USA Wang, H.and Chong, S.
    2015Visual detection of isothermal nucleic acid amplification using pH-sensitive dyesBiotechniquesTanner, N.A., Zhang, Y. and Evans, T.C., Jr.
    1994VISA: Visual Sequence Analysis for the comparison of multiple amino acid sequences.CABIOSPosfai, J., Szaraz, Z., and Roberts, R.J.
    2006Viral oncoproteins target the DNA methyltransferases.OncogeneBurgers, W.A., Blanchon, L., Pradhan, S., de Launoit, Y., Kouzarides, T.and Fuks, F.
    2004Versatile protein biotinylation strategies for potential high-throughput proteomicsJ Am. Chem. Soc.Lue, R.Y., et al.
    1988Vectors that facilitate the expression and purification of foreign peptides in Escherichia coli by fusion to maltose-binding protein.GeneGuan, C.D., Li, P., Riggs, P.D., and Inouye, H.
    2013VectorsBrenner's Encyclopedia of GeneticsAnton, B.P.
    2010Vascular-Targeting Anti-Oxidant Therapy in a Model of Hypertension and StrokeJ. Cardiovasc. PharmacolGreig, J.A. et al.
    2008Variation of acharan sulfate and monosaccharide composition and analysis of neutral N-glycans in African giant snail (Achatina fulica)Glycoconjugate JournalPark, Y., Zhang, Z., Laremore, T.N., Li, B., Sim, J.S., Im, A.R., Ahn, M.Y., Kim, Y.S., Linhardt, R.J., Glycoconj, J.
    2014Validation of microinjection methods for generating knockout mice by CRISPR/Cas-mediated genome engineeringSci RepHorii T, Arai Y, Yamazaki M, Morita S, Kimura M, Itoh M, Abe Y, Hatada IGibson Assembly®
    1998Utilizing the C-terminal cleavage activity of a protein splicing element to purify recombinant proteins in a single chromatographic step.Nucl.Acids Res.Chong, S., Montello, G.E., Zhang, A., Cantor, E.J., Liao, W., Xu, M.-Q.and Benner, J.
    2009Using shotgun sequence data to find active restriction enzyme genesNuc. Acid. Res. Zheng, Y., Posfai, J., Morgan, R. D., Vincze, T., and Roberts, R.J.
    1992Using Molecular Biological Techniques to Identify and Study Gene Products Involved in Dirofilarial Immunoprophylaxis.American Heartworm SocietyHough, D.M., Awobuluyi, M.E., McReynolds, L.A., Carlow, C.K.S., and Maina, C.V.
    2009Using chemical approaches to study selenoproteins-Focus on thioredoxin reductasesBiochim. Biophys. Acta.Hondal, R. J.
    2011Using a structural and logics systems approach to infer bHLH-DNA binding specificity determinantsNucleic Acids Res. De Masi, F., Grove, C.A., Vedenko, A., Alibés, A., Gisselbrecht, S.S., Serrano, L., Bulyk, M.L. and Walhout, A.J.
    2010USER friendly DNA recombination (USERec): a simple and flexible near homology-independent method for gene library constructionProtein Eng Des SelVilliers BR, Stein V, Hollfelder FUSER™ Cloning
    2007USER friendly DNA engineering and cloning method by uracil excisionNucl.Acids.Res.Bitinaite, J., Rubino, M., Varma, K.H., Schildkraut, I., Vaisvila, R.and Vaiskunaite, R.
    2009Use of intein-mediated protein ligation strategies for the fabrication of functional protein arraysMethods Enzymol.Chattopadhaya, S., et al.
    2007Use of intein-mediated phosphoprotein arrays to study substrate specificity of protein phosphatases.BioTechniquesKochinyan, S., Sun.L., Ghosh, I., Barshevsky, T., Xu, J.and Xu, M.Q.
    2007Use of intein-mediated phosphoprotein arrays to study substrate specificity of protein phosphatasesBiotechniquesKochinyan, S., et al.
    1989Use of Degenerate Oligonucleotides for Amplification of the nifH Gene from the Marine Cyanobacterium Trichodesmium thiebautii.Appl.Environ.Microbiol.,Zehr, J.P., and McReynolds, L.A.
    2011Uptake of radiolabeled GlcNAc into Saccharomyces cerevisiae via native hexose transporters and its in vivo incorporation into GPI precursors in cells expressing heterologous GlcNAc kinase.REMS Yeast ResScarcelli, J.J., Colussi, P.A., Fabre, A.L., Boles, E., Orlean, P.and Taron, C.H.
    2010Unusual target site disruption by the rare-cutting HNH restriction endonuclease PacI.StructureShen, B.W., Heiter, D.F., Chan, S.H., Wang, H., Xu, S.Y., Morgan, R.D., Wilson, G.G.and Stoddard, B.L.
    2010Unusual target site disruption by the rare-cutting HNH restriction endonuclease PacIStructure Shen, B.W., Heiter, D.F., Chan, S.H., Wang, H., Xu, S.Y., Morgan, R.D., Wilson, G.G. and Stoddard, B.L.
    2000Understanding the immutability of restriction enzymes: crystal structure of BglII and its DNA substrate at 1.5 angstrom resolution.Nature Struct.Biol.Lukacs, C.M., Kucera, R., Schildkraut, I.and Aggarwal, A.K.
    2007Uncoupling metallonuclease metal ion binding sites via nudge mutagenesis.J Biol Inorg Chem Papadakos, G.A., Nastri, H., Riggs, P.and Dupureur, C.M.
    2007UHRF1 Plays a Role in Maintaining DNA Methylation in Mammalian Cells.ScienceBostick, M., Kim, J.K., Esteve, P-O., Clark, A., Pradhan, S and Jacobsen, S.
    2009UHRF1 binds G9a and participates in p21 transcriptional regulation in mammalian cells.Nucl.Acids.Res.Kim, J.K., Estève, P.O., Jacobsen, S.E.and Pradhan, S.
    2014Ubiquity and diversity of human-associated demodex mites.PLoS OneMegan S Thoemmes, Daniel J Fergus, Julie Urban, Michelle Trautwein, Robert R DunnRoutine PCR
    1995Typing marine vent thermophiles by DNA polymerase restriction fragement length polymorphisms.Archaea A Laboratory ManualPerler, F.B., Southworth, M.W., Wilbur, D.G., and Wallace, D.
    1988Type II restriction-modification systems.Trends in Genetics Wilson, G.G.
    2014Type II restriction endonucleases-a historical perspective and moreNucleic Acids ResPingoud A, Wilson GG, Wende W
    1993Type II Restriction EndonucleasesNucleasesRoberts, R.J.and Halford, S.E.
    2014Type II Cadherins Guide Assembly of a Direction-Selective Retinal Circuit.CellXin Duan, Arjun Krishnaswamy, Irina De la Huerta, Joshua R SanesHigh-Fidelity PCR
    2013Type I restriction enzymes and their relativesNucleic Acids ResearchWil A. M. Loenen, David T. F. Dryden, Elisabeth A. Raleigh, Geoffrey G. Wilson
    2014Type I restriction enzymes and their relativesNucleic Acids ResLoenen WA, Dryden DT, Raleigh EA, Wilson GG
    2008Two-dimensional gel-based approaches for the assessment of N-Linked and O-GlcNAc glycosylation in human and simian immunodeficiency virusesProteomicsGraham, D.R., Mitsak, M.J., Elliott, S.T., Chen, D., Whelan, S.A., Hart, G.W., Van Eyk, J.E. Glycobiology
    1986Two unique restriction endonucleases from Neisseria lactamica.Nucl.Acids Res.Qiang, B.Q., and Schildkraut, I.
    1995Two novel restriction endonucleases from Campylobacter jejuni.GeneVitor, J.M., and Morgan, R.D.
    1981Two new restriction endonucleases from Proteus vulgaris.Nucl.Acids Res.Gingeras, T.R., Greenough, L., Schildkraut, I., and Roberts, R.J.
    2013Two new restriction endonucleases from Proteus vulgaris.Nucl.Acids Res.Gingeras, T.R., Greenough, L., Schildkraut, I., and Roberts, R.J.
    2005Two crystal forms of the restriction enzyme MspI-DNA complex show the same novel structure.Protein Sci.Xu, Q.S., Robert, R.J.and Guo, H.-C.
    2011Two Color STED microscopy in living cells.Biomedical Optics Express Pellett, P.A., Sun, X., Gould, T.J., Rothman, J.E., Xu, M-Q, Corrêa, I.R.Jr.and Bewersdorf, J.
    2014Tuning the electrical properties of the heart by differential trafficking of KATP ion channel complexesJ Cell SciArakel EC, Brandenburg S, Uchida K, Zhang H, Lin YW, Kohl T, Schrul B, Sulkin MS, Efimov IR, Nichols CG, Lehnart SE, Schwappach BGlycobiology
    2009Tuning microbial hosts for membrane protein productionMicrobial Cell Factories Freigassner, M., Pichler, H. and Glieder, A.
    2008Tuning Escherichia coli for membrane protein overexpressionPNAS Wagner, S., Klepsch, M., Schlegel, S., Appel, A., Draheim, R., Tarry, M., Hö, M., van Wijk, K.J., Slotboom, D.J., Persson, J.O. and de Gier, J.
    2011Tuning different expression parameters to achieve soluble recombinant proteins in E. coli: Advantages of high-throughput screeningBiotechnology JournalCorrea, A. and Oppezzo, P.
    2011Tuned Escherichia coli as a host for the expression of disulfide-rich proteinsBiotechnology JournalSalinas, G., Pellizza, L., Margenat, M., et al.
    2006TspMI, a thermostable isoschizomer of XmaI (5'C/CCGGG3'): characterization and single molecule imaging with DNA.Appl Microbiol.Biotechnol.Parashar, V., Capalash, N., Xu, S.Y., Sako, Y.and Sharma, P.
    2014Trypanosome MKT1 and the RNA-binding protein ZC3H11: interactions and potential roles in post-transcriptional regulatory networksNucleic Acids ResSingh A, Minia I, Droll D, Fadda A, Clayton C, Erben E
    2010Triplet imaging of oxygen consumption during the contraction of a single smooth muscle cellBiophys. J. Geissbuehler M. et al.
    2011TrbB from conjugative plasmid F is a structurally distinct disulfide isomerase that requires DsbD for redox state maintenance.J BacteriolHemmis, C.W., Berkmen, M., Eser, M.and Schildbach, J.F.
    2004Transposon-mediated linker insertion scanning mutagenesis of the Escherichia coli McrA endonuclease.J.Bacteriol.Anton, B.P.and Raleigh, E.A.
    1992Transmission-blocking antibodies recognize microfilarial chitinase in brugian lymphatic filariasis.Proc.Natl.Acad.Sci.USAFuhrman, J.A., Lane, W.S., Smith, R.F., Piessens, W.F., and Perler, F.B.
    2010Transmembrane delivery and biological effect of human growth hormone via a phage displayed peptide in vivo and in vitroJ. Pharm. Sci.Zhang, T. et al.
    2014Transient accumulation of 5-carboxylcytosine indicates involvement of active demethylation in lineage specification of neural stem cellsCell RepWheldon LM, Abakir A, Ferjentsik Z, Dudnakova T, Strohbuecker S, Christie D, Dai N, Guan S, Foster JM, Corrêa IR Jr, Loose M, Dixon JE, Sottile V, Johnson AD, Ruzov A
    2014Transcriptomic analysis of carboxylic acid challenge in Escherichia coli: beyond membrane damagePLoS OneRoyce LA, Boggess E, Fu Y, Liu P, Shanks JV, Dickerson J, Jarboe LRGibson Assembly®
    2015Transcriptional Analysis of Deinococcus radiodurans Reveals Novel Small RNAs That Are Differentially Expressed under Ionizing Radiation.Appl. Environ. Microbiol.Tsai, H.C. et al
    2007Tracking of human Y receptors in living cells- A fluorescence approachPeptidesBöhme. et al.
    2009Topological studies of hSVCT1, the human sodium-dependent vitamin C transporter and the influence of N-glycosylation on its intracellular targetingExp. Cell Res. Velho, A.M., Jarvis, S.M. Glycobiology
    2015Tissue-specific epigenetics in gene neighborhoods: myogenic transcription factor genesHum Mol GenetChandra, S., Terragni, J., Zhang, G., Pradhan, S., Haushka, S., Johnston, D., Baribault, C., Lacey, M. and Ehrlich, M.
    2014Time-resolved fluorescence of 2-aminopurine in DNA duplexes in the presence of the EcoP15I Type III restriction-modification enzymeBiochem Biophys Res CommunMa L, Wu X, Wilson GG, Jones AC, Dryden DT
    1994Three-dimensional structure of the adenine-specific DNA methyltransferase M.Taq I in complex with the cofactor S-adenosylmethionine.Proc.Natl.Acad.Sci.USA Labahn, J., Granzin, J., Schluckebier, G., Robinson, D.P., Jack, W.E., Schildkraut, I., and Saenger, W.
    2013Three-color single molecule imaging shows WASP detachment from Arp2/3 complex triggers actin filament branch formation eLifeBenjamin A Smith, Shae B Padrick, Lynda K Doolittle, Karen Daugherty-Clarke, Ivan R Corrêa Jr, Ming-Qun Xu, Bruce L Goode3, Michael K Rosen, Jeff Gelles
    2012Thousands of missed genes found in bacterial genomes and their analysis with COMBRBiol Direct.EX. Biol Direct.Wood, D.E., Lin, H., Levy-Moonshine, A., Swaminathan, R., Chang, Y.C., Anton, B.P., Osmani, L., Steffen, M., Kasif, S. and Salzberg, S.L.
    1996Thermostable DNA Polymerases.Enzymes and Proteins from Hyperthermophilic Microorganisms, Advs.Protein ChemistryPerler, F.B., Kumar, S., and Kong, H.
    1996Thermostable Bst DNA polymerase I lacks a 3' fwdarw 5' proofreading exonuclease activity1.Genetic Analysis Biomolecular Engineering Aliotta, J.M., Pelletier, J.J., Ware, J.L., Moran, L.S., Benner, J.S., and Kong, H.
    1994Thermal cycle Dideoxy DNA Sequencing.Methods Mol.Biol.Slatko, B.E.
    1996Thermal cycle dideoxy DNA sequencingMethods Mol.Biol.Slatko, B.
    1999Thermal Asymmetric Interlaced PCR Amplification of YAC Insert End Fragments for Chromosome Walking in Plasmodium falciparum and Other A/T-Rich Genomes.BioTechniquesFoster, J.M., Christodoulou, Z., Cowan, G.M.and Newbold, C.I.
    2014Therapeutic epitopes of Leptospira LipL32 protein and their characteristicsProtein Eng Des SelManeewatch S, Adisakwattana P, Chaisri U, Saengjaruk P, Srimanote P, Thanongsaksrikul J, Sakolvaree Y, Poungpan P, Chaicumpa WPhage Display
    2008The Wolbachia endosymbiont of Brugia malayi has an active phosphoglycerate mutase: a candidate target for anti-filarial therapiesParasitol. Res. Foster, J.M., Raverdy, S., Ganatra, M.B., Colussi, P.A., Taron, C.H. and Carlow, C.K.S.
    1996The XmnI Restriction-Modification System - Cloning, Expression, Sequence Organization And Similarity Between The R And M-Gene.GeneNwankwo, D.O., Lynch, J.J., Moran, L.S., Fomenkov, A., and Slatko, B.E.
    2013The Xist lncRNA exploits three-dimensional genome architecture to spread across the X chromosomeScienceEngreitz JM, Pandya-Jones A, McDonel P, Shishkin A, Sirokman K, Surka C, Kadri S, Xing J, Goren A, Lander ES, Plath K, and Guttman M
    2005The Wolbachia Genome of Brugia malayi: Endosymbiont Evolution within a Human Pathogenic Nematode.PLoS Biology Foster, J., Ganatra, M., Kamal, Ibrahim, Ware, J., Makarova, K., Ivanova, N., Bhattacharyya, A., Kapatral, V., Kumar, S., Posfai, J., Vincze, T., Ingram, J., Moran, L., Lapidus, A., Omelchenko, M., Kyrpides, N., Ghedin, E., Wang, S., Goltsman, E., Joukov, V., Ostrovskaya, O., Tsukerman, K., Mazur, M., Comb, D., Koonin, E.and Slatko, B.
    1999The Wolbachia Genome Consortium.Microbiol.and Comparative Genomics Slatko, B.E., O'Neill, S.L., Scott, A.L., Werren, J.L., Blaxter, M.L.and the Wolbachia genome Consortium
    2008The Wolbachia endosymbiont of Brugia malayi has an active pyruvate phosphate dikinase.Mol.Biochem.Parasitol.Raverdy, S., Foster, J.M., Roopenian, E.and Carlow, C.K.
    2008The Wolbachia endosymbiont of Brugia malayi has an active phosphoglycerate mutase: a candidate target for anti-filarial therapies.Parasitol.Res.Foster, J.M., Raverdy, S., Ganatra, M.B., Colussi, P.A., Taron, C.H.and Carlow, C.K.S.
    2009The Wolbachia endosymbiont of Brugia malayi has an active phosphoglycerate mutase: a candidate target for anti-filarial therapies.Parasitol.Res.Foster, J.M., Raverdy, S., Ganatra, M.B., Colussi, P.A., Taron, C.H.and Carlow, C.K.S.
    2010The Wolbachia endosymbiont as an anti-filarial nematode target.SymbiosisSlatko, B.E., Taylor, M.J.& Foster, J.M.
    2008The way forward, enhanced characterization of therapeutic antibody glycosylation: comparison of three level mass spectrometry-based strategiesJ. Chromatogr. B Analyt. Technol. Biomed. Life Sci.Wagner-Rousset, E., Bednarczyk, A., Bussat, M.C., Colas, O., Corvaïa, N., Schaeffer, C., Van Dorsselaer, A., Beck, A.Glycobiology
    2001The VP1-unique region of parvovirus B19: amino acid variability and antigenic stabilityJ. Gen. Virol. Dorsch, S., et al.
    1987The Use of DNA Sequencing Reactions as Probes for Southern Blots, Dot Blots and Colony Hydridizations.BioTechniquesCard, C.O., Williams, S.A., Moran, L.S., Poole, C.B., and Slatko, B.E.
    1987The use of DNA methylases to alter the apparent recognition specificities of restriction endonucleases.Methods Enzymol.Nelson, M., and Schildkraut, I.
    2014The uric acid transporter SLC2A9 is a direct target gene of the tumor suppressor p53 contributing to antioxidant defenseOncogeneItahana Y, Han R, Barbier S, Lei Z, Rozen S, Itahana KGlycobiology
    1997The Tsp45I restriction-modification system is plasmid-borne within its thermophilic host.GeneWayne, J., Holden, M., and Xu, S.Y.