Publications

Publications

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YearTitleJournalAuthorsApplication(s)
2011Using a structural and logics systems approach to infer bHLH-DNA binding specificity determinantsNucleic Acids Res. De Masi, F., Grove, C.A., Vedenko, A., Alibés, A., Gisselbrecht, S.S., Serrano, L., Bulyk, M.L. and Walhout, A.J.
2016DNA recognition by the SwaI restriction endonuclease involves unusual distortion of an 8 base pair A: T-rich target.Nucleic Acids Res. Shen, B.W., Heiter, D.F., Lunnen, K.D., Wilson, G.G. and Stoddard, B.L.
2016Novel m4C modification in type I restriction-modification systems.Nucleic Acids Res. Morgan, R.D., Luyten, Y.A., Johnson, S.A., Clough, E.M., Clark, T.A. and Roberts, R.J.
2009The Kruppel-like zinc finger protein Glis3 directly and indirectly activates insulin gene transcriptionNucleic Acids Res.Yang, Y., Chang, B.H., Samson, S.L., Li, M.V., Chan, L.
2011COMBREX: a project to accelerate the functional annotation of prokaryotic genomesNucleic Acids Res.Roberts, R.J., Chang, Y.C., Hu, Z., Rachlin, J.N., Anton, B.P., Pokrzywa, R.M., Choi, H.P., Faller, L.L., Guleria, J., Housman, G., Klitgord, N., Mazumdar, V., McGettrick, M.G., Osmani, L., Swaminathan, R., Tao, K.R., Letovsky, S., Vitkup, D., Segre, D., Salzberg, S.L., Delisi, C., Steffen, M. and Kasif, S.,
2012Polbase: a repository of biochemical, genetic and structural information about DNA polymerasesNucleic Acids Res.Langhorst, B.W., Jack. W.E., Reha-Krantz, L. and Nichols, N.M.
2012Rapid incorporation kinetics and improved fidelity of a novel class of 3'-OH unblocked reversible terminatorsNucleic Acids Res.Gardner, A.F., Wang, J., Wu, W., Karouby, J., Li, H., Stupi, B.P., Jack, W.E., Hersh, M.N. and Metzker, M.L.
2012Structural bias in T4 RNA ligase-mediated 3'-adapter ligationNucleic Acids Res.Zhuang, F., Fuchs, R.T., Sun, Z., Zheng, Y. and Robb, G.B.
2012The methylomes of six bacteriaNucleic Acids Res.Murray, I.A., Clark, T.A., Morgan, R.D., Boitano, M., Anton, B.P., Luong, K., Fomenkov, A., Turner, S.W., Korlach, J. and Roberts, R.J.
2016Binding of 14-3-3 reader proteins to phosphorylated DNMT1 facilitates aberrant DNA methylation and gene expression.Nucleic Acids Res.Esteve, P.O., Zhang, G., Ponnaluri, V.K., Deepti, K., Chin, H.G., Dai, N., Saqum, C., Black, K., Correa, I.R. Jr., Bedford, M.T., Cheng, X. and Pradhan, S.