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We believe that basic research and the cultivation of scientific knowledge is critical for us to stay connected with our customers and to drive scientific breakthroughs. At NEB, over 30 labs participate in research projects, which are aided by post-doctoral fellows and students in Masters and Ph.D. programs. NEB researchers have authored or co-authored over 1,000 publications (as of 1/17) many of which are in peer-reviewed journals. Further, NEB products have been used successfully in numerous publications by scientists throughout the world.

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Year	Title	Journal	Authors	Application(s)
2015	Two new phragmotic ant species from Africa: morphology and next-generation sequencing solve a caste association problem in the genus Carebara Westwood.	Zookeys.	Fischer G, Azorsa F, Garcia FH, Mikheyev AS, Economo EP.
2010	Codon optimization of the calf prochymosin gene and its expression in Kluyveromyces lactis	World J. Microbiol. Biotechnol.	Feng, Z., et al.
2007	It Takes Two: Lessons From the First Nematode Wolbachia Genome Sequence.	Wolbachia, A Bug's Life	Pfarr, K., Foster, J.and Slatko, B.
2001	Restriction endonucleases. In: Molecular biology problem solver	Wiley-Liss, Inc.	Robinson, D., Walsh, P.R., Bonventre, J.A.
2009	Fluorescence in living systems: applications in chemical biology	Wiley Encyc. of Chem. Biol.	Cornish, V. W.
2010	Peptides from phage display library modulate gene expression in mesenchymal cells and potentiate osteogenesis in unicortical bone defects	Vis. Exp.	Balian, G. et al.	Phage Display
2014	Generation of West Nile virus infectious clones containing amino acid insertions between capsid and capsid anchor	Viruses	Vandergaast R, Hoover LI, Zheng K, Fredericksen BL	Gibson Assembly®
2011	A reporter system for assaying influenza virus RNP functionality based on secreted Gaussia luciferase activity	Virology J.	Zhu, W. et al.
2008	A cell-based luciferase assay amenable to high-throughput screening of inhibitors of arenavirus budding.	Virology	Capul, A.A. and de la Torre, J.C.
2008	A cell-based luciferase assay amenable to high-throughput screening of inhibitors of arenavirus budding	Virology	Capul, A.A. and de la Torre, J.C.
2006	The role of single N-glycans in proteolytic processing and cell surface transport of the Lassa virus glycoprotein.GP-C.	Virol. J.	Eichler, R., Lenz, O., Garten, W., Strecker, T.
2011	Identification and characterization of the cofactor-independent phosphoglycerate mutases of Dirofilaria immitis and its Wolbachia endosymbiont.	Veterinary Parasitology	Li.Z., Galvin, B., Raverdy, S.and Carlow, C.K.S.
1990	Antigenic and dynamic properties of the surface of Onchocerca microfilariae.	Trop.Med.Parasitol.	Edwards, M.K., Busto, P., James, E.R., Carlow, C.K.S., and Philipp, M.
1998	Novel, sensitive and low-cost diagnostic tests for "river blindness" - detection of specific antigens in tears, urine and dermal fluid.	Trop.Med.Inter.Health	Ngu, J.L., Knenfou, C., Capuli, E., McMoli, T.E., Perler, F., Mbwagbor, J., Tumme, C., Nlatte, O.B., Donfack, J.and Asonganyi, T.
2004	First sequenced genome of a parasitic nematode.	Trends Parasitol.	Ghedin, E., Wang, S., Foster, J.and Slatko, B.
2005	Mining nematode genome data for novel drug targets.	Trends Parasitol.	Foster, J.M., Zhang, Y., Kumar, S.and Carlow, C.K.S.
2015	Expanding the MDx toolbox for filarial diagnosis and surveillance	Trends Parasitol.	Alhassan, A., Li, Z., Poole, C.B. and Carlow, C.K.S.
2002	Helminth genomics: from gene discovery to genome sequencing.	Trends Parasitol	Foster, J.M.and Johnston, D.A.
2001	Nuclear receptors in nematodes: themes and variations.	Trends in Genetics	Sluder, A.E.and Maina, C.V.
1988	Type II restriction-modification systems.	Trends in Genetics	Wilson, G.G.
2010	Lighting up multiprotein complexes: lessons from GPCR oligomerization	Trends Biotechnol	Ciruela F. et al.
1984	Acetylcholinesterase secreted by intestinal nematodes: a reinterpretation of its putative role of "biochemical holdfast."	Trans.Royal Soc Trop.Med.and Hyg.	Philipp, M.
2014	Stable cell surface expression of GPI-anchored proteins, but not intracellular transport, depends on their fatty acid structure	Traffic	Janesh, N. Correa, I.R., Jr. and Watanabe, R.
2009	Development of a dual luciferase	TrAC Trends in Analytical Chemistry	Roda, A., Guardigli, M., Michelini, E. and Mirasoli, M.
2009	Bioluminescence in analytical chemistry and in vivo imaging	TrAC Trends in Analytical Chemistry	Roda, A., Guardigli, M., Michelini, E., Mirasoli, M.
2015	Rescue of cells from apoptosis increases DNA repair in UVB exposed cells: implications for the DNA damage response	Toxicol. Res.	Karbaschi, Mahsa., Macip, Salvador., Mistry, Vilas., Abbas, Hussein H.K., Delinassios, George J., Evans, Mark D., Young, Antony R., Cooke, Marcus S.
2015	Developmental exposure to 2,3,7,8-tetrachlorodibenzo-p-dioxin alters DNA methyltransferase (dnmt) expression in zebrafish (Danio rerio)	Toxicol Appl Pharmacol	Aluru N, Kuo E, Helfrich LW, Karchner SI, Linney EA, Pais JE, Franks DG
1999	A natural example of protein trans-splicing.	TIBS	Perler, F.B.
2015	Bovine embryo sex determination by multiplex loop-mediated isothermal amplification.	Theriogenology	Trisadee Khamlor, Petai Pongpiachan, Rangsun Parnpai, Kanchana Punyawai, Siwat Sangsritavong, Nipa Chokesajjawatee	Isothermal Amplification
2009	"Translational Recoding"	The Wiley Encyclopedia of Chemical Biology, Tadhg P.Begley, Ed	Osborne, E.M.and Noren, C.J.
2013	The First Identification and Retrospective Study of Severe Fever With Thrombocytopenia Syndrome in Japan	The Journal of Infectious Diseases	Toru Takahashi, Ken Maeda, Tadaki Suzuki, Aki Ishido, Toru Shigeoka, Takayuki Tominaga, Toshiaki Kamei, Masahiro Honda, Daisuke Ninomiya, Takenori Sakai, Takanori Senba, Shozo Kaneyuki, Shota Sakaguchi, Akira Satoh, Takanori Hosokawa, Yojiro Kawabe, Shintaro Kurihara, Koichi Izumikawa, Shigeru Kohno, Taichi Azuma, Koichiro Suemori, Masaki Yasukawa, Tetsuya Mizutani, Tsutomu Omatsu, Yukie Katayama, Masaharu Miyahara, Masahito Ijuin, Kazuko Doi, Masaru Okuda, Kazunori Umeki, Tomoya Saito, Kazuko Fukushima, Kensuke Nakajima, Tomoki Yoshikawa, Hideki Tani, Shuetsu Fukushi, Aiko Fukuma, Momoko Ogata, Masayuki Shimojima, Noriko Nakajima, Noriyo Nagata, Harutaka Katano, Hitomi Fukumoto, Yuko Sato, Hideki Hasegawa, Takuya Yamagishi, Kazunori Oishi, Ichiro Kurane, Shigeru Morikawa, Masayuki Saijo
1999	"Protein Splicing"	The Encyclopedia of Molecular Biology	Perler, F.B., Xu, M.and Noren, C.J.
2006	Protein splicing in cis and in trans.	The Chemical Record	Saleh, L.and Perler, F.B.
2006	Synthesis and evaluation of the bioluminescent activity of (S)-Cypridina luciferin and its analogs	Tetrahedron Letters	Wu, C., Kawasaki, K., Ohgiya, S., Ohmiya, Y.
2006	Syntheses and evaluation of the bioluminescent activity of (S)-Cypridina luciferin and its analogs	Tetrahedron Letters	Wu, C., Kawasaki, K., Ohgiya.S. and Ohmiya, Y.
1998	Discovery and Uses of Novel Glycosidases	Techniques in Glycobiology	Wong-Madden, S.T., Landry, D., and Guthrie, E.P.
1997	Discovery and Uses of Novel Glycosidases	Techniques in Glycobiology	Wong-Madden, S.T., Landry, D., and Guthrie, E.P.	Glycobiology
2016	Characterization of innate immunity genes in the parasitic nematode Brugia malayi	Symbiosis	Libro, S., Slatko, B.E. and Foster, J.M.
2012	Targeted genome enrichment for efficient purification of endosymbiont DNA from host DNA	Symbiosis	Geniez, S., Foster, J.M., Kumar, S., Moumen, B., Leproust, E., Hardy, O., Guadalupe, M., Thomas, S.J., Boone, B., Hendrickson, C., Bouchon, D., Greve, P and Slatko, B.E.
2010	The Wolbachia endosymbiont as an anti-filarial nematode target.	Symbiosis	Slatko, B.E., Taylor, M.J.& Foster, J.M.
2008	The symbiotic relationship between filarial parasitic nematodes and their wolbachia endosymbionts - a resource for a new generation of control measures.	Symbiosis	Ghedin, E., Daehnel, K., Foster, J., Slatko, B.and Lustigman S.
2001	Restriction enzyme BsoBI-DNA complex: a tunnel for recognition of degenerate DNA sequences and potential histidine catalysis.	Structure	van der Woerd, M.J., Pelletier, J.J., Xu, S.and Friedman, A.M.
2003	A Dual Role for an Aspartic Acid in Glycosylasparaginase Autoproteolysis.	Structure	Qian, X., Guan, C.and Guo, H.-C.
2002	Structure of a tRNA Repair Enzyme and Molecular Biology Workhorse: T4 Polynucleotide Kinase.	Structure	Galburt, E.A., Pelletier, J., Wilson, G.and Stoddard, B.L.
2004	An asymmetric complex of restriction endonuclease MspI on its palindromic DNA recognition site.	Structure	Xu, Q.S., Kucera, R.B., Roberts, R.J.and Guo, H.-C.
2005	Implications for Switching Restriction Enzyme Specificities from the Structure of BstYI Bound to a BglII DNA Sequence	Structure	Townson, S.A., Samuelson, J.C., Xu, S.Y.and Aggarwal, A.K.
2005	Crystal structure of the restriction-modification system control element C.BclI and mapping of its binding site.	Structure	Sawaya, M.R., Zhu, Z., Fana, M., Chan, S.H., Dabur, R., Xu, S.Y.and Balendiran, G.K.
1995	Crystal structure of endo-beta-N-acetylglucosaminidase H at 1.9 A resolution: active-site geometry and substrate recognition.	Structure	Rao, V., Guan, C., and Van Roey, P.
1994	Structure of restriction endonuclease BamHI phased at 1.95 A resolution by MAD analysis.	Structure	Newman, M., Strzelecka, T., Dorner, L.F., Schildkraut, I., and Aggarwal, A.K.
2010	Unusual target site disruption by the rare-cutting HNH restriction endonuclease PacI	Structure	Shen, B.W., Heiter, D.F., Chan, S.H., Wang, H., Xu, S.Y., Morgan, R.D., Wilson, G.G. and Stoddard, B.L.
2008	Structures of the rare-cutting restriction endonuclease NotI reveal a unique metal binding fold involved in DNA binding.	Structure	Lambert, A.R., Sussman, D., Shen, b., Maunus, R., Nix, J., Samuelson, J., Xu, S.Y.and Stoddard, B.L.
2007	Selecting targeting of adenoviral vectors to neural precursor cells in the hippocampus of adult mice: new prospects for in situ gene therapy	Stem Cells	Schmidt, A. et al.
2016	High-efficiency generation of induced pluripotent mesenchymal stem cells from human dermal fibroblasts using recombinant proteins.	Stem Cell Res Ther.	Chen, F., Zhang, G., Yu, L., Feng, Y., Li, X., Zhang, Z., Wang, Y., Sun, D. and Pradhan, S.
2013	Prokaryotic super program advisory committee DOE Joint Genome Institute, Walnut Creek, CA, March 27, 2013	Stand Genomic Science	Garrity, G.M. Banfield, J., Eisen, J., van der Lelie, N., McMahon, T., Rusch, D., Delong, E., Moran, M.A., Currie, C., Fuhrman, J., Hallam, S., Hugenholtz, P., Moran, N., Nelson, K., Roberts, R., Stepanauskas, R.
2010	Open source tool for prediction of genome wide protein-protein interaction network based on ortholog information.	Source Code for Biology and Medicine	Pedamallu, C.and Posfai, J.
2010	Gene synthesis of the bovine prochymosin gene and high-level expression in Kluyvermyces lactis	Sheng Wu Gong Cheng Xue Bao	Yuan W, et al.
2016	Epidemiological typing of Neisseria gonorrhoeae and detection of markers associated with antimicrobial resistance directly from urine samples using next generation sequencing	Sex. Transm. Infect	Graham, R.M.A. et al.
2013	Massively parallel characterization of restriction endonucleases	Scopus	Kamps-Hughes, N., Quimby, A., Zhu, Z., Johnson, E.A.
2002	Inteins in microbial genomes: distribution, mechanism and function.	Scientific World Journal 2	Southworth, M.W.and Perler, F.B.
2016	Advanced uracil DNA glycosylase-supplemented real-time reverse transcription loop-mediated isothermal amplification (UDG-rRT-LAMP) method for universal and specific detection of Tembusu virus	Scientific Reports	Tang Y, Chen H, Diao Y
2015	Restriction Cascade Exponential Amplification (RCEA) assay with an attomolar detection limit: a novel, highly specific, isothermal alternative to qPCR	Scientific Reports
2015	Expression and purification of single-chain Type IV restriction enzyme Eco94GmrSD and determination of it substrate preference	Scientific Reports	He, X., Hull, V., Thomas, J.A., Fu, X., Gidwani, S., Gupta, Y.K., Black, L.W. and Xu, S-Y.
2017	Serotyping dengue virus with isothermal amplification and a portable sequencer	Scientific Reports	Yamagishi, J., et al.
2017	Isothermal Amplification of Long, Discrete DNA Fragments Facilitated by Single-Stranded Binding Protein	Scientific Reports	Zhang Y, Tanner N
2017	NEBNext Human Microbiome DNA Enrichment Kit	Scientific Reports	5. Thomas, T.
2014	Science for the suffering	Scientific American World View	Slatko, B.
2011	A Radically Different Mechanism for S-Adenosylmethionine-Dependent Methyltransferases.	Science Express	Grove, T.L., Benner, J.S., Radle, M.I., Ahlum, J.H., Landgraf, B.J., Krebs, C.and Booker, S.J.
2001	The sequence of the human genome	Science	Venter, J.C., Roberts, R.J.et al.
2001	Information access.Building a "GenBank" of the published literature.	Science	Roberts, R.J., Varmus, H.D., Ashburner, M., Brown, P.O., Eisen, M.B., Khosla, C., Kirschner, M., Nusse, R., Scott, M.and Wold, B.
2003	Structure of Rab GDP-dissociation inhibitor in complex with prenylated YPT1 GTPase	Science	Rak, A., et al.
2002	Modulation of postendocytic sorting of G protein-coupled receptors	Science	Whistler, J.L., Enquist, J., Marley, A., Fong, J., Gladher, F., Tsuruda, P., Murray, S.R., Von Zastrow, M.
2013	The Xist lncRNA exploits three-dimensional genome architecture to spread across the X chromosome	Science	Engreitz JM, Pandya-Jones A, McDonel P, Shishkin A, Sirokman K, Surka C, Kadri S, Xing J, Goren A, Lander ES, Plath K, and Guttman M
2011	Ordered and dynamic assembly of single spliceoseoms	Science	Hoskins, A. et al.
2011	Expanding the genetic code of Escherichia coli with Phosphoserine	Science	Park, H.S., Hohn, M.J., Umehara, T., Guo. L.T., Osborne, E.M., Benner, J., Noren, C.J., Rinehart, J. and Soll, D.
2016	Reminder to deposit DNA sequences	Science	Blaxter, M., Danchin, A., Savakis, B., Fukami-Kobayashi, K., Kurokawa, K., Sugano, S., Roberts, R.J., Salzberg, S.L. and Wu, C.I.
2016	Phytochromes function as thermosensors in Arabidopsis.	Science	Jung, J-H. et al.
2015	Stem cells. Asymmetric apportioning of aged mitochondria between daughter cells is required for stemness	Science	P, Katajisto., Dohla, J., Chaffer, CL., Pentinmikko, N., Marjanovic, N., Igbal, S., Zoncu, R., Chen, W., Weinberg, RA., Sabatini, DM.	SNAP Cell
1995	Structure of BamHI endonuclease bound to DNA: partial folding and unfolding on DNA binding.	Science	Newman, M., Strzelecka, T., Dorner, L.F., Schildkraut, I., and Aggarwal, A.K.
2014	Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types.	Science	Jaitin, DA., Kenigsberg, E., Keren-Shaul, H., Elefant, N., Paul, F., Zaretsky, I., Mildner, A., Cohen, N., Jung, S., Tanay, A. and Amit, I.
2014	Integration of growth and patterning during vascular tissue formation in Arabidopsis	Science	Bert De Rybel, Milad Adibi, Alice S. Breda, Jos R. Wendrich, Margot E. Smit, Ondej Novk, Nobutoshi Yamaguchi, Saiko Yoshida, Gert Van Isterdael, Joakim Palovaara, Bart Nijsse, Mark V. Boekschoten, Guido Hooiveld, Tom Beeckman, Doris Wagner, Karin Ljung, Christian Fleck, Dolf Weijers	High-Fidelity PCR
2007	UHRF1 Plays a Role in Maintaining DNA Methylation in Mammalian Cells.	Science	Bostick, M., Kim, J.K., Esteve, P-O., Clark, A., Pradhan, S and Jacobsen, S.
2007	Widespread lateral gene transfer from intracellular bacteria to multicellular eukaryotes.	Science	Hotopp, J.C., Clark, M.E., Oliveira, D.C., Foster, J.M., Fischer, P., Torres, M.C., Giebel, J.D., Kumar, N., Ishmael, N., Wang, S., Ingram, J., Nene, R.V., Shepard, J., Tomkins, J., Richards, S., Spiro, D.J., Ghedin, E., Slatko, B., Tettelin, H.and Werren, J.H.
2007	Draft Genome of the Filarial Parasite Brugia malayi.	Science	Ghedin E, Wang S, Spiro D, Caler E, Zhao Q, Crabtree J, Allen JE, Delcher AL, Guiliano DB, Miranda-Saavedra D, Angiuoli SV, Creasy T, Amedeo P, Haas B, El-Sayed NM, Wortman JR, Feldblyum T, Tallon L, Schatz M, Shumway M, Koo H, Salzberg SL, Schobel S, Pertea M, Pop M, White O, Barton GJ, Carlow CK, Crawford MJ, Daub J, Dimmic MW, Estes CF, Foster JM, Ganatra M, Gregory WF, Johnson NM, Jin J, Komuniecki R, Korf I, Kumar S, Laney S, Li BW, Li W, Lindblom TH, Lustigman S, Ma D, Maina CV, Martin DM, McCarter JP, McReynolds L, Mitreva M, Nutman TB, Parkinson J, Peregrín-Alvarez JM, Poole C, Ren Q, Saunders L, Sluder AE, Smith K, Stanke M, Unnasch TR, Ware J, Wei AD, Weil G, Williams DJ, Zhang Y, Williams SA, Fraser-Liggett C, Slatko B, Blaxter ML, Scott AL.
2010	Frequent mutations of chromatin remodeling gene ARID1A in ovarian clear cell carcinoma	Science	Jones, S., Wang, T.-L., Shih, Ie-M., et al
2009	Comprehensive mapping of long range interactions reveals folding principles of the human genome	Science	Lieberman-Aiden E., van Berkum N., Williams L., Imakaev M., Ragoczy T., Telling A., Amit I., Lajoie B., Sabo P., Dorschner M., Sandstrom R., Bernstein B., BenderM. A., Groudine M., Gnirke A., Stamatoyannopoulos J., Mirny L., Lander E., Dekker J.	Epigenetics
2017	DNA damage is a pervasive cause of sequencing errors, directly confounding variant identification	Science	Chen, L., Liu, P., Evans, T.C., Jr., Ettwiller, L.M.
1980	Restriction endonucleases from three strains of Haemophilus influenzae	Sci. Sin.	Shen, S.X., Li, Q.L., Yan, P,F., Zhou, B., Ye, S.Y., Lu, Y.Y., Wang, D.B.
2015	Label-free single-cell protein quantification using a drop-based mix-and-read system.	Sci. Rep.	Abbaspourrad A, Zhang H, Tao Y, Cui N, Asahara H, Zhou Y, Yue D, Koehler SA, Ung LW, Heyman J, Ren Y, Ziblat R, Chong S, Weitz DA.
2016	AnnoTALE: bioinformatics tools for identification, annotation, and nomenclature of TALEs from Xanthomonas genomic sequences.	Sci Rep.	Grau, J., Reschke, M., Erkes, A., Streubel, J., Morgan, R.D., Wilson, G.G., Koebnik, R. and Boch, J.
2016	The Microbiome of Aseptically Collected Human Breast Tissue in Benign and Malignant Disease	Sci Rep.	Hieken, T.J. et al.
2016	Genomic study of the Ket: a PaleoEskimo-related ethnic group with significant ancient North Eurasian ancestry.	Sci Rep.	Flegontov, P. et al.
2016	Metagenomic analysis of bloodstream infections in patients with acute leukemia and therapy induced neutropenia.	Sci Rep.	Gyarmati, P. et al.
2016	Comparison of intraspecific, interspecific and intergeneric chloroplast diversity in Cycads.	Sci Rep.	Jiang, G.F. et al.
2016	Profiling of core fucosylated N-glycans using a novel bacterial lectin that specifically recognizes α1,6 fucosylated chitobiose.	Sci Rep.	Vainauskas, S., Duke, R.M., McFarland, J., McClung, C., Ruse, C. and Taron, C.H.
2015	Environmental marine pathogen isolation using mesocosm culture of sharpsnout seabream: striking genomic and morphological features of novel Endozoicomonas sp.	Sci Rep.	Katharios, P. et al.
2017	Targeted enrichment and sequencing of recent endosymbiont-host lateral gene transfers	Sci Rep.	Dunning Hotopp, J.C., Slatko, B.E., Foster, J.M.
2016	A mix-and-read drop-based in vitro two-hybrid method for screening high-affinity peptide binders.	Sci Rep	Cui, N., Zhang, H., Schneider, N., Tao, Y., Asahara, H., Sun, Z., Cai, Y., Koehler, S.A., de Greef, T.F., Abbaspourrad, A., Weitz, D.A. and Chong, S.
2016	Expression and purification of the modification-dependent restriction enzyme BisI and its homologous enzymes	Sci Rep	Xu, S.Y., Klein, P., Degtyarev, S.K.h. and Roberts, R.J.
2015	A simple bridging flocculation assay for rapid, sensitive and stringent detection of gene specific DNA methylation	Sci Rep	Wee E., Ngo T., Trau M.	Epigenetics,DNA Enrichment
2015	A Structural and Functional Comparison Between Infectious and Non-Infectious Autocatalytic Recombinant PrP Conformers	Sci Rep	Noble GP., Wang DW., Walsh DJ., Barone JR., Miller MB., Nishina KA., Li S., Supattapone S.
2015	Production of bioactive chicken (Gallus gallus) follistatin-type proteins in E. coli	Sci Rep	Lee S.B., Park S.K., Kim Y.S.
2015	Production of a Highly Protease-Resistant Fungal α-Galactosidase in Transgenic Maize Seeds for Simplified Feed Processing	Sci Rep	Yang W., Zhang Y., Zhou X., Zhang W., Xu X., Chen R., Meng Q., Yuan J., Yang P., Yao B.
2015	Microscale purification of antigen-specific antibodies	Sci Rep	Brown EP., Normandin E., Osei-Owusu NY., Mahan AE., Chan YN., Lai JI., Vaccari M., Rao M., Franchini G., Alter G., Ackerman ME.
2015	Multi-Dimensional Measurement of Antibody-Mediated Heterosubtypic Immunity to Influenza.	Sci Rep	Wang J., Hilchey SP., Hyrien O., Huertas N., Perry S., Ramanunninair M., Bucher D., Zand MS.
2015	Serum N-Glycans: A New Diagnostic Biomarker for Light Chain Multiple Myeloma	Sci Rep	Chen J., Fang M., Zhao YP., Yi CH., Ji J., Cheng C., Wang MM., Gu X., Sun QS., Chen XL., Gao CF.
2015	Targeted Glycoengineering Extends the Protein N-glycosylation Pathway in the Silkworm Silk Gland	Sci Rep	Asazuma HM., Sohn BH., Kim Y.S., Kuo CW., Khoo KH., Kucharski CA., Fraser MJ., Jarvis DL.
2015	Involvement of the heterodimeric interface region of the nucleotide binding domain-2 (NBD2) in the CFTR quaternary structure and membrane stability	Sci Rep	Julien M., Chauvet S., Scheckenbach KE., Alfaidy N., Chanson M., Benharouga M.
2015	Enhanced production of secretory glycoprotein VSTM1-v2 with mouse IgGκ signal peptide in optimized HEK293F transient transfection	Sci Rep	Liu H., Zou X., Li T., Wang X., Yuan W., Chen Y., Han W.
2014	A robust TALENs system for highly efficient mammalian genome editing	Sci Rep	Feng Y, Zhang S, Huang X	DNA Assembly and Cloning,Golden Gate Assembly
2014	Characterization of cleavage intermediate and star sites of RM.Tth111II.	Sci Rep	Zhu, Z., Guan, S., Robinson, D., El Fezzazi, H., Quimby, A. and Xu, S-Y.
2014	Structure and mutagenesis of the DNA modification-dependent restriction endonuclease AspBHI	Sci Rep	Horton JR, Nugent RL, Li A, Mabuchi MY, Fomenkov A, Cohen-Karni D, Griggs RM, Zhang X, Wilson GG, Zheng Y, Xu SY, Cheng X
2014	Multiplex genome engineering in human cells using all-in-one CRISPR/Cas9 vector system	Sci Rep	Sakuma T, Nishikawa A, Kume S, Chayama K, Yamamoto T	Golden Gate Assembly
2014	Validation of microinjection methods for generating knockout mice by CRISPR/Cas-mediated genome engineering	Sci Rep	Horii T, Arai Y, Yamazaki M, Morita S, Kimura M, Itoh M, Abe Y, Hatada I	Gibson Assembly®
2014	Identification and Characterization of a Suite of Tumor Targeting Peptides for Non-Small Cell Lung Cancer	Sci Rep	McGuire MJ, Gray BP, Li S, Cupka D, Byers LA, Wu L, Rezaie S, Liu YH, Pattisapu N, Issac J, Oyama T, Diao L, Heymach JV, Xie XJ, Minna JD, Brown KC	Phage Display
2014	Intranasal mRNA nanoparticle vaccination induces prophylactic and therapeutic anti-tumor immunity	Sci Rep	Phua KK, Staats HF, Leong KW, Nair SK
2017	Restriction and modification of deoxyarchaeosine (dG+)-containing phage 9 g DNA.	Sci Rep	Tsai R et al
2003	Phosphorylation of eIF4E attenuates its interaction with mRNA 5' cap analogs by electrostatic repulsion: intein-mediated protein ligation strategy to obtain phosphorylated protein	RNA	Zuberek, J., et al.
2016	Efficient In Situ Detection of mRNAs using the Chlorella virus DNA ligase for Padlock Probe Ligation	RNA	Schneider, N and Meier, M.
2015	Rapid isolation and single-molecule analysis of ribonucleoproteins from cell lysate by SNAP-SiMPull	RNA	Margaret L Rodgers, Joshua Paulson, Aaron A Hoskins	SNAP Cell,SNAP Surface
2010	Optimization of enzymatic reaction conditions for generating representative pools of cDNA from small RNA.	RNA	Munafo, D.and Robb, B.
2009	E.coli RNase III(E38A) generates discrete-sized products from long dsRNA.	RNA	Xiao, J., Feehery, C.E., Tzertzinis, G.and Maina, C.V.
2015	Selective expression of sense and antisense transcripts of the sushi-ichi-related retrotransposon - derived family during mouse placentogenesis.	Retrovirology	Christine Henke, Pamela L Strissel, Maria-Theresa Schubert, Megan Mitchell, Claus C Stolt, Florian Faschingbauer, Matthias W Beckmann, Reiner Strick	High-Fidelity PCR
2011	Uptake of radiolabeled GlcNAc into Saccharomyces cerevisiae via native hexose transporters and its in vivo incorporation into GPI precursors in cells expressing heterologous GlcNAc kinase.	REMS Yeast Res	Scarcelli, J.J., Colussi, P.A., Fabre, A.L., Boles, E., Orlean, P.and Taron, C.H.
2010	Secretory production of recombinant proteins in Escherichia coli	Recent Patents on Biotechnology	Yoon, S.H., Kim, S.K., and Kim J.F.
2006	Self-assembling protein arrays on DNA chips by auto-labeling fusion proteins with a single DNA address	Proteomics	Jongsma M.A., Litjens R. H.
2014	Proteomic identification of mammalian cell-surface derived glycosylphosphatidylinositol anchored proteins through selective glycan enrichment	Proteomics	Cortes LK, Vainauskas S, Dai N, McClung CM, Shah M, Benner JS, Jr IR, VerBerkmoes NC, Taron CH
2009	The effect of carbon source on the secretome of Kluyveromyces lactis	Proteomics	Madinger, C.L., Sharma, S.S., Anton, B.P., Fields, L.G., Cushing, M.L., Canovas, J., Taron, C.H. and Benner, J.S.
2009	The effect of carbon source on the secretome of Kluyveromyces lactis.	Proteomics	Madinger, C.L., Sharma S.S., Anton, B.P., Fields, L.G., Cushing, M.L., Canovas, J., Taron, C.H., and Benner, J.S.
2008	Physical and computational analysis of the yeast Kluyveromyces lactissecreted proteome	Proteomics	Swaim, C.L., et al.
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2008	Two-dimensional gel-based approaches for the assessment of N-Linked and O-GlcNAc glycosylation in human and simian immunodeficiency viruses	Proteomics	Graham, D.R., Mitsak, M.J., Elliott, S.T., Chen, D., Whelan, S.A., Hart, G.W., Van Eyk, J.E.	Glycobiology
1994	Expression, purification, and crystallization of restriction endonuclease PvuII with DNA containing its recognition site	Proteins	Balendiran, K., Bonventre, J., Knott, R., Jack, W., Benner, J., Schildkraut, I., and Anderson, J.E.
2008	Identification of GATC- and CCGG-recognizing Type II REases and their putative specificity-determining positions using Scan2S--a novel motif scan algorithm with optional secondary structure constraints.	Proteins	Niv, M.Y., Skrabanek, L., Roberts, R.J., Scheraga, H.A.and Weinstein, H.
2000	Crystal Structure of the Complex of Brugia Malayi Cyclophilin and Cyclosporin A.	Protein Sci.	Ellis, P.J., Carlow, C.K.S., Ma, D.and Kuhn, P.
1998	Semisynthesis of cytotoxic proteins using a modified protein splicing element.	Protein Sci.	Evans, T.C., Benner, J.and Xu, M-Q
1998	Crystal Structure of the Cyclophilin-like Domain from the Parasitic Nematode Brugia Malayi.	Protein Sci.	Mikol, V., Ma, D., Carlow, C.K.S.
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2002	Intein-mediated affinity-fusion purification of the Escherichia coliRecA protein	Protein Expr. Purif.	Singleton, S. F., et al.
2002	Expression of the class 1 outer-membrane protein of Neisseria meningitidis in Escherichia coli and purification using a self-cleavable affinity tag	Protein Expr. Purif.	Humphries, H. E., Christodoulides, M. and Heckels, J. E.
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2015	Antigenic properties of the human immunodeficiency virus envelope glycoprotein gp120 on virions bound to target cells	PLoS Pathog	Meron Mengistu, Krishanu Ray, George K Lewis, Anthony L DeVico	SNAP Cell,SNAP Surface
2014	Structure of the Trehalose-6-phosphate Phosphatase from Brugia malayi Reveals Key Design Principles for Anthelmintic Drugs	PLoS Pathog	Farelli JD, Galvin BD, Li Z, Liu C, Aono M, Garland M, Hallett OE, Causey TB, Ali-Reynolds A, Saltzberg DJ, Carlow CK, Dunaway-Mariano D, Allen KN
2014	Insights into the initiation of JC virus DNA replication derived from the crystal structure of the T-antigen origin binding domain	PLoS Pathog	Meinke G, Phelan PJ, Kalekar R, Shin J, Archambault J, Bohm A, Bullock PA	Gibson Assembly®
2016	Reconstitution of Protein Translation of Mycobacterium Reveals Functional Conservation and Divergence with the Gram-Negative Bacterium Escherichia coli.	PLoS One.	Srivastava, A., Asahara, H., Zhang, M., Zhang, W., Liu, H., Cui, S., Jin, Q. and Chong, S.
2016	Construction of High-Density Linkage Maps of Populus deltoides × P. simonii Using Restriction-Site Associated DNA Sequencing.	PLoS One.	Tong C, Li H, Wang Y, Li X, Ou J, Wang D, Xu H, Ma C, Lang X, Liu G, Zhang B, Shi J.
2016	Development of a RAD-Seq Based DNA Polymorphism Identification Software, AgroMarker Finder, and Its Application in Rice Marker-Assisted Breeding.	PLoS One.	Fan W, Zong J, Luo Z, Chen M, Zhao X, Zhang D, Qi Y, Yuan Z.
2016	Genetic Divergence between Camellia sinensis and Its Wild Relatives Revealed via Genome-Wide SNPs from RAD Sequencing.	PLoS One.	Yang H, Wei CL, Liu HW, Wu JL, Li ZG, Zhang L, Jian JB, Li YY, Tai YL, Zhang J, Zhang ZZ, Jiang CJ, Xia T, Wan XC.
2015	Thousands of RAD-seq Loci Fully Resolve the Phylogeny of the Highly Disjunct Arctic-Alpine Genus Diapensia (Diapensiaceae).	PLoS One.	Hou Y, Nowak MD, Mirré V, Bjorå CS, Brochmann C, Popp M.
2015	Using Next Generation RAD Sequencing to Isolate Multispecies Microsatellites for Pilosocereus (Cactaceae).	PLoS One.	Bonatelli IA, Carstens BC, Moraes EM.
2015	High-Density Genetic Mapping with Interspecific Hybrids of Two Sea Urchins, Strongylocentrotus nudus and S. intermedius, by RAD Sequencing.	PLoS One.	Zhou Z, Liu S, Dong Y, Gao S, Chen Z, Jiang J, Yang A, Sun H, Guan X, Jiang B, Wang B.
2015	Comparative Population Genomics of African Montane Forest Mammals Support Population Persistence across a Climatic Gradient and Quaternary Climatic Cycles.	PLoS One.	Demos TC, Kerbis Peterhans JC, Joseph TA, Robinson JD, Agwanda B, Hickerson MJ.
2013	The COMBREX project design methodology and initial results	PLOS ONE	Anton BP, Chang YC, Brown P, Choi HP, Faller LL, Guleria J, Hu Z, Klitgord N, Levy-Moonshine A, Maksad A, Mazumdar V, McGettrick M, Osmani L,Pokrzywa R, Rachlin J, Swaminathan R, Allen B, Housman G, Monahan C, Rochussen K, Tao K, Bhagwat AS, Brenner SE, Columbus L, de Crécy-Lagard V, Ferguson D, Fomenkov A, Gadda G, Morgan RD, Osterman AL, Rodionov DA, Rodionova IA, Rudd KE, Söll D, Spain J, Xu SY, Bateman A,Blumenthal RM, Bollinger JM, Chang WS, Ferrer M, Friedberg I, Galperin MY, Gobeill J, Haft D, Hunt J, Karp P, Klimke W, Krebs C, Macelis D, Madupu R, Martin MJ, Miller JH, O'Donovan C, Palsson B, Ruch P, Setterdahl A, Sutton G, Tate J, Yakunin A, Tchigvintsev D, Plata G, Hu J, Greiner R, Horn D,Sjölander K, Salzberg SL, Vitkup D, Letovsky S, Segrè D, DeLisi C, Roberts RJ, Steffen M, Kasif S.
2013	Targeted drug delivery systems mediated by a novel peptide in breast cancer therapy and imaging	PLoS One	Lu, R.-M. et al	Phage Display
2013	Role of DNA methylation in expression and transmission of porcine endogenous retroviruses.	PLOS ONE	Matousková, M., Vesely, P., Daniel, P., Mattiuzzo, G., Hector, R.D., Scobie, L., Takeuchi, Y. and Hejnar, J.
2013	The role of the methyltransferase domain of bifunctional restriction enzyme RM.BpuSI in cleavage activity	PLOS ONE	Sarrade-Loucheur, A., Xu, S-Y. and Chan, S-H.
2013	Biochemical and physiological characterization of fut4 and fut6 mutants defective in arabinogalactan-protein fucosylation in Arabidopsis.	PLOS ONE	Liang, Y., Basu, D., Pattathil, S., Xu, W.L., Venetos, A., Martin, S.L., Faik, A., Hahn, M.G. and Showalter, A.M.
2013	Biochemical Characterization of Hypothetical Proteins from Helicobacter pylori.	PLOS ONE	Choi HP, Juarez S, Ciordia S, Fernandez M, Bargiela R, Albar JP, Mazumdar V, Anton BP, Kasif S, Ferrer M, Steffen M.
2013	A Method for Selectively Enriching Microbial DNA from Contaminating Vertebrate Host DNA	PLOS ONE	George R. Feehery, Erbay Yigit, Samuel O. Oyola, Bradley W. Langhorst, Victor T. Schmidt, Fiona J. Stewart, Eileen T. Dimalanta, Linda A. Amaral-Zettler, Theodore Davis, Michael A. Quail, Sriharsa Pradhan
2013	Fidelity index determination of DNA methyltransferase	PLoS One	Borgaro, J.G., Benner, N., Zhu, Z.
2011	Potent Anti-Tumor Effect Generated by a Novel Human Papilllomavirus (HPV) Antagonist Peptide Reactivating the pRb/E2F Pathway	PLoS One	Guo, C.P. et al.
2011	The Arthrobacter Species FB24 Arth_1007 (DnaB) Intein Is a Pseudogene.	PLoS ONE	Tori, K.and Perler, F.B.
2011	Biochemical Characterization of a Structure-Specific Resolving Enzyme from Sulfolobus Islandicus Rod-Shaped Virus 2.	PLoS ONE	Gardner, A.F., Guan, C.and Jack, W.E.
2011	A SNAP-tagged detivative of HIV-1 - A versatile tool to study virus-cell interactions	PLoS One	Eckhardt, M. et al.
2011	Decoding a Substantial Set of Samples in Parallel by Massive Sequencing	PLoS ONE	Neiman, M., Lundin, S., Savolainen, P., Ahmadian, A.
2016	The Inhibitory Effect of Non-Substrate and Substrate DNA on the Ligation and Self-Adenylylation Reactions Catalyzed by T4 DNA Ligase.	PLoS One	Bauer, R.J., Evans, T.C. Jr. and Lohman, G.J.
2016	Comparative Methylome Analysis of the Occasional Ruminant Respiratory Pathogen Bibersteinia trehalosi.	PLoS One	Anton, B.P., Harhay, G.P., Smith, T.P., Blom, J. and Roberts, R.J.
2015	A Proline-Rich Domain in the Genotype 4 Hepatitis E Virus ORF3	PLoS One	Wang H., Fangxiao J., Liang H., Gu H.
2015	Probing the Run-On Oligomer of Activated SgrAI Bound to DNA	PLoS One	Shah, S., Sanchez, J., Stewart, A., et al.	Cloning & Synthetic Biology,DNA Preparation,Restriction Enzyme Digestion,Restriction Enzyme Digestion
2015	Real-Time Sequence-Validated Loop-Mediated Isothermal Amplification Assays for Detection of Middle East Respiratory Syndrome Coronavirus (MERS-CoV).	PLoS One	Sanchita Bhadra, Yu Sherry Jiang, Mia R Kumar, Reed F Johnson, Lisa E Hensley, Andrew D Ellington	Isothermal Amplification
2015	Phylogeny and differentiation of reptilian and amphibian ranaviruses detected in europe	PLoS One	Stöhr AC, López-Bueno A, Blahak S, Caeiro MF, Rosa GM, Alves de Matos AP, Martel A, Alejo A, Marschang RE
2015	Physiologic Stresses Reveal a Salmonella Persister State and TA Family Toxins Modulate Tolerance to These Stresses	PLoS One	Silva-Herzog E, McDonald EM, Crooks AL, Detweiler CS.
2015	Novel recA-Independent Horizontal Gene Transfer in Escherichia coli K-12	PloS One	Kingston, A. W., Roussel-Rossin, C., Dupont, C., Raleigh, E. A.
2015	Bias in ligation-based small RNA sequencing library construction is determined by adaptor and RNA structure	PLoS One	Fuchs, R.T., Sun, Z., Zhuang, F., et al.	RNA Analysis
2015	Structural and biochemical studies of a moderately thermophilic exonuclease I from Methylocaldum szegediense	PLoS One	Fei, L., Tian, S., Moysey, R., Misca, M., Barker, J.J., Smith, M.A., McEwan, P.A., Pilka, E.S., Crawley, L., Evans, T. and Sun, D.
2015	Clinical Evaluation of a Loop-Mediated Isothermal Amplification (LAMP) Assay for Rapid Detection of Neisseria meningitidis in Cerebrospinal Fluid.	PLoS One	DoKyung Lee, Eun Jin Kim, Paul E Kilgore, Soon Ae Kim, Hideyuki Takahashi, Makoto Ohnishi, Dang Duc Anh, Bai Qing Dong, Jung Soo Kim, Jun Tomono, Shigehiko Miyamoto, Tsugunori Notomi, Dong Wook Kim, Mitsuko Seki	Isothermal Amplification
2015	Complete Genome Sequence of ER2796, a DNA Methyltransferase-Deficient Strain of Escherichia coli K-12	PLoS One	Anton, B.P., Mongodin, E.F., Agrawal, S., Fomenkov, A., Byrd, D.R., Roberts, R.J. and Raleigh, E.A.
2015	Cloning Should Be Simple: Escherichia coli DH5α-Mediated Assembly of Multiple DNA Fragments with Short End Homologies	PLoS One	Kostylev M., Otwell A.E., Richardson R., Suzuki Y.
2015	Genome-Wide Methylation Patterns in Salmonella enterica Subsp. enterica Serovars	PLoS One	Pirone-Davies, C., Hoffmann, M., Roberts, R.J., Muruvanda, T., Timme, R.E., Strain, E., Luo, Y., Payne, J., Luong, K., Song, Y., Tsai, Y.C., Boitano, M., Clark, T.A., Korlach, J., Evans, P.S., Allard, M.W.
2015	Identification of a Conserved Linear B-Cell Epitope of Streptococcus dysgalactiae GapC Protein by Screening Phage-Displayed Random Peptide Library	PLoS One	Zhang L., Zhang H., Fan Z., Zhou X., Yu L., Sun H., Wu Z., Yu Y., Song B., Ma J., Tong C., Wang X., Zhu Z., Cui Y.
2015	Development of a Rapid, Simple Method for Detecting Naegleria fowleri Visually in Water Samples by Loop-Mediated Isothermal Amplification (LAMP).	PLoS One	Aongart Mahittikorn, Hirotake Mori, Supaluk Popruk, Amonrattana Roobthaisong, Chantira Sutthikornchai, Khuanchai Koompapong, Sukhontha Siri, Yaowalark Sukthana, Duangporn Nacapunchai	Isothermal Amplification
2015	Depletion of CG-Specific Methylation in Mycoplasma hyorhinis Genomic DNA after Host Cell Invasion	PLoS One	Chernov AV., Reyes L., Peterson S., Strongin AY.	Epigenetics,Bisulfite Conversion
2015	Dissecting the molecular properties of prokaryotic flotillins	PLoS One	Juri Nio Bach, Marc Bramkamp	SNAP Cell,SNAP Surface
2015	Genome Filtering for New DNA Biomarkers of Loa loa Infection Suitable for Loop-Mediated	PLoS One	Poole CB, Ettwiller L, Tanner NA, Evans TC Jr., Wanji S,Carlow CK
2014	A Modified Janus Cassette (Sweet Janus) to Improve Allelic Replacement Efficiency by High-Stringency Negative Selection in Streptococcus pneumoniae	PLoS One	Li Y, Thompson CM, Lipsitch M	Gibson Assembly®
2014	A continuous-exchange cell-free protein synthesis system based on extracts from cultured insect cells	PLoS One	Stech M, Quast RB, Sachse R, Schulze C, Wüstenhagen DA, Kubick S	Glycobiology
2014	A Modular Plasmid Assembly Kit for Multigene Expression, Gene Silencing and Silencing Rescue in Plants	PLoS One	Binder A, Lambert J, Morbitzer R, Popp C, Ott T, Lahaye T, Parniske M	DNA Assembly and Cloning,Golden Gate Assembly
2014	A versatile system for USER cloning-based assembly of expression vectors for mammalian cell engineering	PLoS One	Lund AM, Kildegaard HF, Petersen MB, Rank J, Hansen BG, Andersen MR, Mortensen UH	USER™ Cloning
2014	An RNA aptamer that specifically binds to the glycosylated hemagglutinin of avian influenza virus and suppresses viral infection in cells	PLoS One	Kwon HM, Lee KH, Han BW, Han MR, Kim DH, Kim DE	Glycobiology
2014	Role of lipid rafts and GM1 in the segregation and processing of prion protein	PLoS One	Botto L, Cunati D, Coco S, Sesana S, Bulbarelli A, Biasini E, Colombo L, Negro A, Chiesa R, Masserini M, Palestini P	Glycobiology
2014	Strand Invasion Based Amplification (SIBA®): A Novel Isothermal DNA Amplification Technology Demonstrating High Specificity and Sensitivity for a Single Molecule of Target Analyte	PLoS One	Hoser MJ, Mansukoski HK, Morrical SW, Eboigbodin KE
2014	Neurospora crassa Female Development Requires the PACC and Other Signal Transduction Pathways, Transcription Factors, Chromatin Remodeling, Cell-To-Cell Fusion, and Autophagy	PLoS One	Chinnici JL, Fu C, Caccamise LM, Arnold JW, Free SJ	Gibson Assembly®
2014	Transcriptomic analysis of carboxylic acid challenge in Escherichia coli: beyond membrane damage	PLoS One	Royce LA, Boggess E, Fu Y, Liu P, Shanks JV, Dickerson J, Jarboe LR	Gibson Assembly®
2014	The Serine-Threonine Protein Kinase PAK4 Is Dispensable in Zebrafish: Identification of a Morpholino-Generated Pseudophenotype	PLoS One	Law SH, Sargent TD	Gibson Assembly®
2014	Ubiquity and diversity of human-associated demodex mites.	PLoS One	Megan S Thoemmes, Daniel J Fergus, Julie Urban, Michelle Trautwein, Robert R Dunn	Routine PCR
2014	Comparison of Subtypes of Listeria monocytogenes Isolates from Naturally Contaminated Watershed Samples with and without a Selective Secondary Enrichment	PLoS ONE	Gorski L, Walker S, Liang AS, Nguyen KM, Govoni J, et al.
2014	Identification of restriction-modification systems of Bifidobacterium animalis subsp. lactis CNCM I-2494 by SMRT sequencing and associated methylome analysis	PLoS One	O'Connell Motherway M, Watson D, Bottacini F, Clark TA, Roberts RJ, Korlach J, Garault P, Chervaux C, van Hylckama Vlieg JE, Smokvina T, van Sinderen D
2014	Identification and Biosynthesis of a Novel Xanthomonadin-Dialkylresorcinol-Hybrid from Azoarcus sp. BH72	PLoS One	Schöner TA, Fuchs SW, Reinhold-Hurek B, Bode HB	Gibson Assembly®
2014	Epigenetic silencing of apoptosis-inducing gene expression can be efficiently overcome by combined SAHA and TRAIL treatment in uterine sarcoma cells	PLoS One	Fröhlich LF, Mrakovcic M, Smole C, Lahiri P, Zatloukal K
2014	Development of VHH Antibodies against Dengue Virus Type 2 NS1 and Comparison with Monoclonal Antibodies for Use in Immunological Diagnosis	PLoS One	Fatima A, Wang H, Kang K, Xia L, Wang Y, Ye W, Wang J, Wang X.	Phage Display
2014	Diversity and Expression of MicroRNAs in the Filarial Parasite, Brugia malayi.	PLoS One	Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA.
2014	Functional characterization improves associations between rare non-synonymous variants in CHRNB4 and smoking behavior	PLoS One	Haller G, Li P, Esch C, Hsu S, Goate AM, Steinbach JH	Glycobiology
2014	Expanded genetic codes in next generation sequencing enable decontamination and mitochondrial enrichment	PLoS One	McKernan KJ, Spangler J, Zhang L, Tadigotla V, McLaughlin S, Warner J, Zare A, Boles RG
2014	Complementation of essential yeast GPI mannosyltransferase mutations suggests a novel specificity for certain Trypanosoma and Plasmodium PigB proteins	PLoS One	Cortes, L.K., Scarcelli, J.J., Taron, C.H.
2014	A simple isothermal DNA amplification method to screen black flies for Onchocerca Volvulus infection	PLoS One	Alhassan, A., Makepeace, B.L., LaCourse, E.J., Osei-Atweneboana, M.Y., Carlow, C.K.S.
2012	Near-infrared fluorescence imaging of mammalian cells and xenograft tumors with SNAP-tag	PLoS ONE	Gong, H. wt al.
2012	Substrate cooperativity in marine luciferases	PLoS One	Tzertzinis, G., Schildkraut, E., and Schildkraut, I.
2012	Substrate cooperativity in marine luciferases	PLoS One	Tzertzinis, G., Schildkraut, E. and Schildkraut, I.
2012	Characterization of Transcription Factors That Regulate the Type IV Secretion System and Riboflavin Biosynthesis in Wolbachia and Brugia malayi	PLoS One	Zhiru, Li and Carlow, C.K.S.
2012	Characterization of transcription factors that regulate the Type IV secretion system and riboflavin biosynthesis in Wolbachia of Brugia malayi	PLOS One	Li, Liz and Carlow, C.
2007	Mining predicted essential genes of Brugaria malayi for nematode drug targets.	PLoS ONE	Kumar, S., Chaudhary, K., Foster, J., Novelli, J., Zhang, Y., Wang, S., Spiro, D., Ghedin, E.and Carlow.C.
2007	A highly sensitive assay for monitoring the secretory pathway and ER stress	PLoS One	Badr, C.E., Hewett, J.W., Breakefield, X.O. and Tannous, B.A.
2007	A highly sensitive assay for monitoring the secretory pathway and ER stress.	PLoS One	Badr. C.E., Hewett, J.W., Breakefield, X.Q and Tannous, B.A.
2010	Polymerase-endonuclease amplification reaction (PEAR) for large-scale enzymatic production of anitsense oligonucleotices.	PLoS ONE	Wang, X., Gou, D.and Xu, S.Y.
2010	Molecular diagnosis of neonatal diabetes mellitus using next-generation sequencing of the whole exome	PLoS One	Bonnefond, A., Durand, E., Sand, O. et al
2010	The human proteins MBD5 and MBD6 associate with heterochromatin but they do not bind methylated DNA	PLoS One	Laget, S., et al.
2010	Targeting of embryonic stem cells by peptide-conjugated quantum dots	PLoS One	Lu, S. et al.
2010	Cofactor requirement of HpyAV restriction endonuclease.	PLoS ONE	Chan, S.H., Opitz, L., Higgins, L., O'loane, D.and Xu, S.Y.
2010	Alteration of Sequence Specificity of the Type IIS Restriction Endonuclease BtsI	PLoS ONE	Guan, S., Blanchard, A., Zhang, P.and Zhu, Z.
2010	Evolution of Bacterial Phosphoglycerate Mutases: Non-homologous Isofunctional Enzymes Undergoing Gene Losses, Gains and Lateral Transfers.	PLoS ONE	Foster, J.M., Davis, P.J., Raverdy, S., Sibley, M.H., Raleigh, E.A., Kumar, S.and Carlow, C.K.S.
2010	Endosymbiont DNA in endobacteria-free filarial nematodes indicates ancient horizontal genetic transfer.	PLoS ONE	McNulty, S.N., Foster, J.M., Mitreva, M., Dunning-Hotopp, J.C., Martin, J., Fischer, K., Wu, B., Davis, P.J., Kumar, S., Brattig, N.W., Slatko, B.E., Weil, G.J.and Fischer, P.U.
2009	The complete genome of Teredinibacter turnerae T7901: an intracellular endosymbiont of marine wood-boring bivalves (shipworms).	PLoS ONE	Yang, J.C., Madupu, R., Durkin, A.S., Ekborg, N.A., Pedamallu, C.S., Hostetler, J.B., Radune, D., Toms, B.S., Henrissat, B., Coutinho, P.M., Schwarz, S., Field, L., Trindade-Silva, A.E., Soares, C.A., Elshahawi, S., Hanora, A., Schmidt, E.W., Haygood, M.G., Posfai, J., Benner, J., Madinger, C., Nove, J., Anton, B., Chaudhary, K., Foster, J., Holman, A., Kumar, S., Lessard, P.A., Luyten, Y.A., Slatko, B., Wood, N., Wu, B., Teplitski, M., Mougous, J.D., Ward, N., Eisen, J.A., Badger, J.H.and Distel, D.L.
2009	A new family of receptor tyrosine kinases with a venus flytrap binding domain in insects and other invertebrates activated by aminoacids	PLoS One	Ahier A. et al.
2009	"Adenosine Triphosphate Stimulates Aquifex aeolicus MutL Endonuclease Activity"	PLoS ONE	Mauris, J., & Evans, J
2009	Human condensin function is essential for centromeric chromatin assembly and proper sister kinetochore orientation	PLoS One	Samoshkin A. et al.
2017	Colorimetric tests for diagnosis of filarial infection and vector surveillance using non-instrumented nucleic acid loop-mediated isothermal amplification (NINA-LAMP).	PLoS One	Poole, C.B., Li, Z., Alhassan, A., Guelig, D., Diesburg, S., Tanner, N.A., Zhang, Y., Evans, T.C. Jr., LaBarre, P., Wanji, S., Burton R.A. and Carlow, C.K.
2017	Examining Sources of Error in PCR by Single-Molecule Sequencing.	PLoS ONE	Potapov Vladamir, Ong Jennifer L
2017	Removing the needle from the haystack: Enrichment of Wolbachia endosymbiont transcripts from host rematode RNA by Cappable-seqTM	PLoS One	Luck, A.N., Slatko, B.E., Foster, J.M.
2017	Various Mutations compensate for a deleterious lacZα insert in the replication enhancer of M13 bacteriophage	PLoS One	Zygiel, E.M., Noren, K.A., Adamkiewicz, M.A., Aprile, R.J., Bowditch, H.K., Carroll, C.L., Cerezo, M.A.S., Dagher, A.M., Hebert, C.R., Hebert, L.E., Mahame, G.M., Milne, S.C., Silvestri, K.M., Sutherland, S.E., Sylvia, A.M., Taveira, C.N., VanValkenburgh, D.J., Noren, C.J., Hall, M.F.
2017	EcoBLMcrX, a classical modification-dependent restriction enzyme in Escherichia coli B: Characterization in vivo and in vitro with a new approach to cleavage site determination	PLoS One	Fomenkov, A., Sun, Z., Dila, D.K., Anton, B.P., Roberts, R.J., Raleigh, E.A.
2017	Examining Sources of Error in PCR by Single-Molecule Sequencing.	PLOS One	Vladimir Potapov, Jennifer L. Ong.
2017	What is in your cup of tea? DNA Verity Test to characterize black and green commercial teas.	PLOS One	Olga De Castro , Maria Comparone, Antonietta Di Maio, Emanuele Del Guacchio, Bruno Menale, Jacopo Troisi, Francesco Aliberti, Marco Trifuoggi , Marco Guida
	Near-Infrared Fluorescence Imaging of Mammalian Cells and Xenograft Tumors with SNAP-tag	PLoS ONE	Gong, H.; Kovar, J. L.; Baker, B.; Zhang, A.; Cheung, L.; Draney, D. R.; Corrêa, I. R., Jr.; Xu, M.-Q.; Olive, M. D.
2010	Identification of a cardiac specific protein transduction domain by in vivo biopanning using a M13 phage peptide display library in mice	PLoS One	Zahid, M. et al.
2011	Targeting the Wolbachia Cell Division Protein FtsZ as a New Approach for Antifilarial Therapy.	PLoS Neglected Tropical Diseases	Li, Z., Garner, A.L., Gloeckner, C., Janda, K.D.and Carlow, C.K.
2010	Molecular Evidence for a Functional Ecdysone Signaling System in Brugia malayi.	PLoS Neglected Tropical Diseases	Tzertzinis, G., Egana, A.L., Palli, S.R., Robinson-Rechavi, M., Gissendanner, C.R., Liu, C., Unnasch, T.R.and Maina, C.V.
2014	The role of an asymmetrically inherited endosymbiont in robust establishment of host embryonic polarity	PLoS Negl. Trop. Dis	Landmann, F., Foster, J.M., Michalski, S., Slatko, B., Sullivan, W.
2016	Identification of Ecdysone Hormone Receptor Agonists as a Therapeutic Approach for Treating Filarial Infections.	PLoS Negl Trop Dis.	Mhashilkar, A.S., Vankayala, S.L., Liu, C., Kearns, F., Mehrotra, P., Tzertzinis, G., Palli, S.R., Woodcock, H.L. and Unnaschm, T.R.
2014	Cofactor-Independent Phosphoglycerate Mutase from Nematodes Has Limited Druggability, as Revealed by Two High-Throughput Screens	PLoS Negl Trop Dis.	Crowther, G.J., Booker, M.L., He, M., Li, T., Raverdy, S., Novelli, J.F., He, P., Dale, N.R.G., Fife, A.M., Barker, R.H., Jr., Kramer, M.L., Van Voorhis, W.C., Carlow, C.K.S. and Wang, M-W.
2014	A Target Repurposing Approach Identifies N-myristoyltransferase as a New Candidate Drug Target in Filarial Nematodes	PLoS Negl Trop Dis.	Galvin, B.D., Li, Z., Villemaine, E., Poole, C.B., Chapman, M.S., Pollastri, M.P., Wyatt, P.G., Carlow, C.K.
2012	Diagnosis of brugian filariasis by loop-mediated isothermal amplification.	PLoS Negl Trop Dis.	Poole CB, Zhang Y, Evans TC Jr., Carlow CK
2016	Sensitive Detection of Plasmodium vivax Using a High-Throughput, Colourimetric Loop Mediated Isothermal Amplification (HtLAMP) Platform: A Potential Novel Tool for Malaria Elimination.	PLoS Negl Trop Dis	Britton, S., Cheng, Q., Grigg, M.J., Poole, C.B., Pasay, C., William, T., Fornace, K., Anstey, N.M., Sutherland, C.J., Drakeley, C. and McCarthy, J.S.
2014	Co-evolution between an Endosymbiont and Its Nematode Host: Wolbachia Asymmetric Posterior Localization and AP Polarity Establishment	PLoS Negl Trop Dis	Landmann F, Foster JM, Michalski ML, Slatko BE, Sullivan W
2012	Diagnosis of Brugian Filariasis by Loop-Mediated Isothermal Amplification	PLOS Negl Trop Dis	Poole, C., Tanner, N. Zhang, Y., Evans, T. and Carlow, C.
2010	Asymmetric Wolbachia Segregation during Early Brugia malayi Embryogenesis Determines Its Distribution in Adult Host Tissues.	PLoS Negl Trop Dis	Landmann, F., Slatko, B., Foster, J.M.and Sullivan, W.
2009	The Heme Biosynthetic Pathway of the Obligate Wolbachia Endosymbiont of Brugia malayi as a Potential Anti-filarial Drug Target.	PLoS Negl Trop Dis	Wu, B., Novelli, J., Foster, J., Vaisvila, R., Conway, L., Ingram, J., Ganatra, M., Rao, A.U., Hamza, I.and Slatko, B.
2008	Targeted nanoparticles for imaging incipient pancreatic ductal adenocarcinoma	PLoS Med.	Kelly, K.A. et al.
2011	Hypomethylation of a LINE-1 Promoter Activates an Alternate Transcript of the MET Oncogene in Bladders with Cancer	PLoS Genet.	Wolff, E.M. et al.	Epigenetics
2016	The Epigenomic Landscape of Prokaryotes.	PLoS Genet.	Blow, M.J., Clark, T.A., Daum, C.G., Deutschbauer, A.M., Fomenkov, A., Fries, R., Froula, J., Kang, D.D., Malmstrom, R.R., Morgan, R.D., Posfai, J., Singh, K., Visel, A., Wetmore, K., Zhao, Z., Rubin, E.M., Korlach, J., Pennacchio, L.A. and Roberts, R.J.
2010	The de novo cytosine methyltransferase DRM2 requires intact UBA domains and a catalytically mutated paralog DRM3 during RNA-directed DNA methylation in Arabidopsis thaliana	PLoS Genet.	Henderson, I.R., Deleris, A., Wong, W., Zhong, X.H., Chin, H.G., Horwitz, G.A., Kelly, K.A., Pradhan, S., Jacobsen, S.E.
2014	Mutations in four glycosyl hydrolases reveal a highly coordinated pathway for rhodopsin biosynthesis and N-glycan trimming in Drosophila melanogaster	PLoS Genet	Rosenbaum EE, Vasiljevic E, Brehm KS, Colley NJ	Glycobiology
2004	Identifying protein function - a call for community action.	PLoS Biology	Roberts, R.J.
2004	Segmentally Variable Genes: A new perspective on adaptation.	PLoS Biology	Zheng, Y., Roberts, R.J., and Kasif, S.
2005	The Wolbachia Genome of Brugia malayi: Endosymbiont Evolution within a Human Pathogenic Nematode.	PLoS Biology	Foster, J., Ganatra, M., Kamal, Ibrahim, Ware, J., Makarova, K., Ivanova, N., Bhattacharyya, A., Kapatral, V., Kumar, S., Posfai, J., Vincze, T., Ingram, J., Moran, L., Lapidus, A., Omelchenko, M., Kyrpides, N., Ghedin, E., Wang, S., Goltsman, E., Joukov, V., Ostrovskaya, O., Tsukerman, K., Mazur, M., Comb, D., Koonin, E.and Slatko, B.
2016	Structure of Type IIL Restriction-Modification Enzyme MmeI in Complex with DNA Has Implications for Engineering New Specificities.	PLoS Biol.	Callahan, S.J., Luyten, Y.A., Gupta, Y.K., Wilson, G.G., Roberts, R.J., Morgan, R.D. and Aggarwal, A.K.
2015	Novel recA-Independent Horizontal Gene Transfer in Escherichia coli K-12	PLoS	Kingston AW, Roussel-Rossin C, Dupont C, Raleigh EA.
2016	Characterization of a Zika Virus Isolate from Colombia.	PLOS	Anismrita Lahon, Ravi P. Arya, Alexander R. Kneubehl, Megan B. Vogt, Natalie J. M. Dailey Garnes, and Rebecca Rico-Hesse,*
2017	Examining Sources of Error in PCR by Single-Molecule Sequencing	PLOS	Vladimir Potapov and Jennifer L. Ong*
2008	Heterologous expression of Mytilus californianus foot protein three (Mcfp-3) in Kluyveromyces lactis	Platko, J.D., et al.	Platko, J.D., et al.
2013	GoldenBraid 2.0: A Comprehensive DNA Assembly Framework for Plant Synthetic Biology	Plant Physiology	Alejandro Sarrion-Perdigones, Marta Vazquez-Vilar, Jorge Palací, Bas Castelijns, Javier Forment, Peio Ziarsolo, José Blanca, Antonio Granell, Diego Orzaez	Golden Gate Assembly
2016	Development of a universal and simplified ddRAD library preparation approach for SNP discovery and genotyping in angiosperm plants.	Plant Methods.	Yang GQ, Chen YM, Wang JP, Guo C, Zhao L, Wang XY, Guo Y, Li L, Li DZ, Guo ZH.
2015	Sequence-tagged high-density genetic maps of Zoysia japonica provide insights into genome evolution in Chloridoideae.	Plant J.	Wang F, Singh R, Genovesi AD, Wai CM, Huang X, Chandra A, Yu Q.
2015	Functional Characterization of Cucurbitadienol Synthase and Triterpene Glycosyltransferase Involved in Biosynthesis of Mogrosides from Siraitia grosvenorii.	Plant Cell Physiol	Longhai Dai, Can Liu, Yueming Zhu, Jiangsheng Zhang, Yan Men, Zeng Yan, Yuanxia Sun	High-Fidelity PCR
2013	A membrane-bound NAC transcription factor, ANAC017, mediates mitochondrial retrograde signaling in Arabidopsis	Plant Cell	Ng S, Ivanova A, Duncan O, Law SR, Van Aken O, De Clercq I, Wang Y, Carrie C, Xu L, Kmiec B, Walker H, Van Breusegem F, Whelan J, Giraud E	Gibson Assembly®
2005	Protein Splicing Elements and Plants: From Transgene Containment to Protein Purification.	Plant Biol.	Evans, T.C., Jr., Xu, M.-Q.and Pradhan, S.
2008	Selective labeling of proteins with chemical probes in living cells	Physiology	Lin M.Z. and Wang L.
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2000	Construction and use of pIII-displayed peptide libraries	Phage Display: A Laboratory Manual	Noren, K.A., Saltman, L.H.and Noren, C.J.
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2007	Tracking of human Y receptors in living cells- A fluorescence approach	Peptides	Böhme. et al.
2010	Novel peptide ligands that bind specifically to mouse embryonic stem cells	Peptides	Zhao, S. et al.
2010	Anti-tumor effects of a novel chimeric peptide on S180 and H22 xenografts bearing nude mice	Peptides	Wu, D. et al.
2010	Identification of a novel muscle targeting peptide in mdx mice	Peptides	Seow, Y. et al.
2009	Identification of nose-to-brain homing peptide through phage display	Peptides	Wan, X.M. et al.
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2013	Anti-Wolbachia drug discovery and development: safe macrofilaricides for onchocerciasis and lymphatic filariasis	Parasitology	Taylor, M.J., Hoerauf, A., Townson, S., Slatko, B.E. and Ward, S.A
1996	Cloning and Expression of DiT33 from Dirofilaria-Immitis - a Specific and Early Marker of Heartworm Infection.	Parasitology	Hong, X.Q., Mejia, J.S., Kumar, S., Perler, F.B., and Carlow, C.K.S.
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2012	Drugs and targets to perturb the symbiosis of Wolbachia and filarial nematodes	Parasitic Helminths: Targets, Screens, Drugs and Vaccines	Taylor, M.J., Ford, L, Ford, Hoerauf, A., Pfarr, K., Foster, J.M., Kumar, S. and Slatko, B.E.
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2015	microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach.	Parasites & Vectors	Macchiaroli, N. et al.
2008	Absence of Wolbachia endobacteria in the non-filariid nematodes Angiostrongylus cantonensis and A.costaricensis.	Parasites & Vectors	Foster, J.M., Kumar, S., Ford, L., Johnston, K.L., Ben, R., Graeff-Teixeira, C.and Taylor, M.J.
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2014	Absense of Wolbachia endobacteria in the human parasitic nematode Dracunculus medinensis and two related Dracunculus species infecting wildlife	Parasit Vectors	Foster, J.M., Landmann, F., Ford, L., Johnston, K.L., Elsasser, S.C., Schulte-Hostedde, A.I., Taylor, M.J., Slatko, B.E.
2007	A Concise Synthesis of the Pennsylvania green fluorophore and labeling of intracellular targets with O6-Benzylguanine Derivatives	Org. Lett.	Mottram L. F. et al.
2010	Fura-2FF-based calcium indicator for protein labeling	Org. Biomol. Chem.	Ruggiu A. A. et al.
2016	Transcription factor LSF-DNMT1 complex dissociation by FQI1 leads to aberrant DNA methylation and gene expression.	Oncotarget	Chin, H.G., Ponnaluri, C., Zhang, G., Esteve, P., Schaus, S.E., Hansen, U. and Pradhan, S.
2016	Comprehensive nucelosome mapping of the human genome in cancer progression	Oncotarget	Druliner, B.R., Vera, D., Johnson, R., Ruan, X., Apone, L.M., Dimalanta, E.T., Stewart, F.J., Boardman, L., Dennis, J.H.
2014	The uric acid transporter SLC2A9 is a direct target gene of the tumor suppressor p53 contributing to antioxidant defense	Oncogene	Itahana Y, Han R, Barbier S, Lei Z, Rozen S, Itahana K	Glycobiology
2007	Viral oncoproteins target the DNA methyltransferases	Oncogene	Burgers, W.A., Blanchon, L., Pradhan, S., de Launoit, Y., Kouzarides, T. and Fuks, F.
2007	Viral oncoproteins target the DNA methyltransferases	Oncogene	Burgers, W.A., Blanchon, L., Pradhan, S., de Launoit, Y., Kouzarides, T., Fuks,F.
2014	REBASE - A database for DNA restriction and modification: enzymes, genes and genomes	Nucleic Acids Research, Advance Access	Roberts, R.J., Vincze, T., Posfai, J., Macelis, D.
2010	BspRI restriction endonuclease: cloning, expression in E.coli and sequential cleavage mechanism.	Nucleic Acids Research Advance Access	Rasko, T., Der, A., Klement, E., Slaska-Kiss, K., Posfai, E., Medzihradsky, K.F., Marshak, D.R., Roberts, R.J., Kiss, A.
2003	Purification and characterisation of a novel DNA methyltransferase, M.AhdI	Nucleic Acids Research	Marks, P., McGeehan, J., Wilson, G., Errington, N. and Kneale, G.
2013	The complex methylome of the human gastric pathogen Helicobacter pylori	Nucleic Acids Research	Juliane Krebes, Richard D. Morgan, Boyke Bunk, Cathrin Spröer, Khai Luong, Raphael Parusel, Brian P. Anton, Christoph König, Christine Josenhans, Jörg Overmann, Richard J. Roberts, Jonas Korlach, Sebastian Suerbaum
2013	Characterization of DNA methyltransferase specificities using single-molecule, real-time DNA sequencing	Nucleic Acids Research	Clark, T.A., Murray, I.A., Morgan, R.D., Kislyuk, A.O., Spittle, K.E., Boitano, M., Fomenkov, A., Roberts, R.J. and Korlach, J.
2013	Highlights of the DNA cutters: a short history of the restriction enzymes	Nucleic Acids Research	Wil A. M. Loenen, David T. F. Dryden, Elisabeth A. Raleigh, Geoffrey G. Wilson, and Noreen E. Murray
2013	Increasing cleavage specificity and activity of restriction endonuclease KpnI	Nucleic Acids Research	Kommireddy Vasu, Easa Nagamalleswari, Mai Zahran, Petra Imhof, Shuang-yong Xu, Zhenyu Zhu, Siu-Hong Chan, Valakunja Nagaraja
2013	Genome-wide hydroxymethylation tested using the HELP-GT assay shows redistribution in cancer	Nucleic Acids Research	Bhattacharyya, S., Yu, Y., Suzuki, M., Campbell, N., Mazdo, J., Vasanthakumar, A., et al.	5-hmC Detection & Analysis
2013	The other face of restriction: modification-dependent enzymes	Nucleic Acids Research	Wil A. M. Loenen, Elisabeth A. Raleigh
2016	Hydroxymethyluracil modifications enhance the flexibility and hydrophilicity of double-stranded DNA.	Nucleic acids research	Carson, S., Wilson, J., Aksimentiev, A., Weigele, P. R., & Wanunu, M.
2015	A database for DNA restriction and modification: enzymes, genes and genomes.	Nucleic Acids Research	Roberts, R.J., Vincze, T., Posfai, J., Macelis, D.
2014	Structural basis for Klf4 recognition of methylated DNA	Nucleic Acids Research	Yiwei Liu, Yusuf Olatunde Olanrewaju, Yu Zheng, Hideharu Hashimoto, Robert M. Blumenthal, Xing Zhang, Xiaodong Cheng
2014	Modification-dependent restriction endonuclease, MspJI, flips 5-methylcytosine out of the DNA helix	Nucleic Acids Research	Horton, J.R., Wang, H., Mabuchi, M.Y., Zhang, X., Roberts, R.J., Zheng, Y., Wilson, G.G., Cheng, X
2014	Type I restriction enzymes and their relatives	Nucleic Acids Research	Wil A. M. Loenen, David T. F. Dryden, Elisabeth A. Raleigh, Geoffrey G. Wilson
2014	Efficient DNA ligation in DNA–RNA hybrid helices by Chlorella virus DNA ligase	Nucleic Acids Research	Gregory J. S. Lohman, Yinhua Zhang, Alexander M. Zhelkovsky, Eric J. Cantor, Thomas C. Evans Jr.
2012	Stucture and cleavage activity of the tetrameric MspJI DNA modification-dependent restriction endonuclease.	Nucleic Acids Research	Horton, J.R., Mabuchi, M., Cohen-Karni, D., Zhang, X., Griggs, R., Samaranayake, M., Roberts, R.J., Zheng, Y. and Cheng, X.
2010	Chromatin particle spectrum analysis: a method for comparative chromatin structure analysis using paired-end mode next-generation DNA sequencing	Nucleic Acids Research	Kent, N.A., Adams, S., Moorhouse, A., and Paszkiewicz, K.
2018	Comparative genome and methylome analysis reveals restriction/modification system diversity in the gut commensal Bifidobacterium breve.	Nucleic Acids Research	Bottacini, F., Morrissey, R., Roberts, R.J., James, J., van Breen, J., Egan, M., Lambert, J., van Limpt, K., Knol, J., O'Connell Motherway, M. and van Sinderen, D.
2013	Characterization of the 5-hydroxymethylcytosine-specific DNA restriction endonucleases	Nucleic Acids Res.	Borgaro, J.G. and Zhu, Z.
2011	Mutational and biochemical analysis of the DNA-entry nuclease EndA from Streptococcus pneumoniae	Nucleic Acids Res.	Midon, M., Schäfer, P., Pingoud, A., Ghosh, M., Moon, A.F., Cuneo, M.J., London, R.E. and Meiss, G.
2011	YaeJ is a novel ribosome-associated protein inEscherichia coli that can hydrolyze peptidyl-tRNA on stalled ribosomes	Nucleic Acids Res.	Handa, Y., Inaho, N. and Nameki, N.
2011	Using a structural and logics systems approach to infer bHLH-DNA binding specificity determinants	Nucleic Acids Res.	De Masi, F., Grove, C.A., Vedenko, A., Alibés, A., Gisselbrecht, S.S., Serrano, L., Bulyk, M.L. and Walhout, A.J.
2011	COMBREX: a project to accelerate the functional annotation of prokaryotic genomes	Nucleic Acids Res.	Roberts, R.J., Chang, Y.C., Hu, Z., Rachlin, J.N., Anton, B.P., Pokrzywa, R.M., Choi, H.P., Faller, L.L., Guleria, J., Housman, G., Klitgord, N., Mazumdar, V., McGettrick, M.G., Osmani, L., Swaminathan, R., Tao, K.R., Letovsky, S., Vitkup, D., Segre, D., Salzberg, S.L., Delisi, C., Steffen, M. and Kasif, S.,
2016	Sensitive and specific miRNA detection method using SplintR LigasePublication.	Nucleic Acids Res.	Jin, J., Vaud, S., Zhelkovsky, A.M., Posfai, J. and McReynolds, L.A.
2016	Perpetuating the homing endonuclease life cycle: identification of mutations that modulate and change I-TevI cleavage preference.	Nucleic Acids Res.	Roy, A.C., Wilson, G.G. and Edgell, D.R.
2016	Novel m4C modification in type I restriction-modification systems.	Nucleic Acids Res.	Morgan, R.D., Luyten, Y.A., Johnson, S.A., Clough, E.M., Clark, T.A. and Roberts, R.J.
2016	Denys-Drash syndrome associated WT1 glutamine 369 mutants have altered sequence-preferences and altered responses to epigenetic modifications.	Nucleic Acids Res.	Hashimoto, H., Zhang, X., Zheng, Y., Wilson, G.G. and Cheng, X.
2016	Binding of 14-3-3 reader proteins to phosphorylated DNMT1 facilitates aberrant DNA methylation and gene expression.	Nucleic Acids Res.	Esteve, P.O., Zhang, G., Ponnaluri, V.K., Deepti, K., Chin, H.G., Dai, N., Saqum, C., Black, K., Correa, I.R. Jr., Bedford, M.T., Cheng, X. and Pradhan, S.
2016	DNA recognition by the SwaI restriction endonuclease involves unusual distortion of an 8 base pair A: T-rich target.	Nucleic Acids Res.	Shen, B.W., Heiter, D.F., Lunnen, K.D., Wilson, G.G. and Stoddard, B.L.
2016	High-temperature single-molecule kinetic analysis of thermophilic archaeal MCM helicases	Nucleic Acids Res.	Schermerhorn, K.M., Tanner, N., Kelman, Z. and Gardner, A.F.
2016	Adapting capillary gel electrophoresis as a sensitive, high-throughput method to accelerate characterization of nucleic acid metabolic enzymes	Nucleic Acids Res.	Greenough, L., Schermerhorn, K.M., Mazzola, L., Bybee, J., Rivizzigno, D., Cantin, E., Slatko, B.E., Gardner, A.F.
2016	Perpetuating the homing endonuclease life cycle: identification of mutations that modulate and change I-TevI cleavage preference	Nucleic Acids Res.	Roy, A.C., Wilson, G.G. and Edgell, D.R.
2016	A high-throughput assay for the comprehensive profiling of DNA ligase fidelity	Nucleic Acids Res.	Lohman, G.J., Bauer, R.J., Nichols, N.M., Mazzola, L., Bybee, J., Rivizzigno, D., Cantin, E., Evans, T.C., Jr.
2015	Recognition and cleavage of 5-methylcytosine DNA by bacterial SRA-HNH proteins	Nucleic Acids Res.	Han, T., Yamada-Mabuchi, M., Zhao, G., Li, L., Liu, G., Oui, H-Y, Deng, Z., Zheng, Y. and He, X.
1983	The isolation and characterization of the Escherichia coli DNA adenine methylase (dam) gene	Nucleic Acids Res.	Brooks, J.E., Blumenthal, R.M., Gingeras, T.R.
2014	The other face of restriction: modification-dependent enzymes	Nucleic Acids Res.	Loenen, W.A.M. and Raleigh, E.A.
1988	Isolation and properties of a new site specific endonuclease Bme142I from Bacillus megaterium	Nucleic Acids Res.	Fomenkov, A.I., Kramarov, V.M., Andreev, L.V., Mochalov, V.V., Smolyaninov, V.V., Matvienko, N.I.
2012	Rapid incorporation kinetics and improved fidelity of a novel class of 3'-OH unblocked reversible terminators	Nucleic Acids Res.	Gardner, A.F., Wang, J., Wu, W., Karouby, J., Li, H., Stupi, B.P., Jack, W.E., Hersh, M.N. and Metzker, M.L.
2012	Reconstitution of translation from Thermus thermophilus reveals a minimal set of components sufficient for protein synthesis at high temperatures and functional conservation of modern and ancient translation components	Nucleic Acids Res.	Zhou, Y., Asahara, H. and Chong, S.
2012	Polbase: a repository of biochemical, genetic and structural information about DNA polymerases	Nucleic Acids Res.	Langhorst, B.W., Jack. W.E., Reha-Krantz, L. and Nichols, N.M.
2012	The methylomes of six bacteria	Nucleic Acids Res.	Murray, I.A., Clark, T.A., Morgan, R.D., Boitano, M., Anton, B.P., Luong, K., Fomenkov, A., Turner, S.W., Korlach, J. and Roberts, R.J.
2012	Structural bias in T4 RNA ligase-mediated 3'-adapter ligation	Nucleic Acids Res.	Zhuang, F., Fuchs, R.T., Sun, Z., Zheng, Y. and Robb, G.B.
2010	In vitro genetic reconstruction of bacterial transcription initiation by coupled synthesis and detection of RNA polymerase holoenzyme	Nucleic Acids Res.	Asahara, H. and Chong, S.
2009	The KrÃ¼ppel-like zinc finger protein Glis3 directly and indirectly activates insulin gene transcription	Nucleic Acids Res.	adr, C.E., Hewett, J.W., Breakefield, X.O. and Tannous, B.A.
2009	The Kruppel-like zinc finger protein Glis3 directly and indirectly activates insulin gene transcription	Nucleic Acids Res.	Yang, Y., Chang, B.H., Samson, S.L., Li, M.V., Chan, L.
2017	Restriction endonuclease AgeI is a monomer which dimerizes to cleave DNA	Nucleic Acids Res.	Tamulaitiene, G., Jovaisaite, V., Tamulaitis, G., Songailiene, I., Manakova, E., Zaremba, M., Grazulis, S., Xu, S.Y., Siksnys, V.
2013	Rapid, modular and reliable construction of complex mammalian gene circuits	Nucleic Acids Res	Guye P, Li Y, Wroblewska L, Duportet X, Weiss R	Gibson Assembly®
2013	Restriction endonuclease TseI cleaves A:A and T:T mismatches in CAG and CTG repeats	Nucleic Acids Res	Ma L, Chen K, Clarke DJ, Nortcliffe CP, Wilson GG, Edwardson JM, Morton AJ, Jones AC, Dryden DT
2013	The genetic code constrains yet facilitates Darwinian evolution	Nucleic Acids Res	Firnberg E, Ostermeier M
2013	Efficient genome editing in Caenorhabditis elegans by CRISPR-targeted homologous recombination	Nucleic Acids Res	Chen C, Fenk LA, de Bono M	Gibson Assembly®
2013	Genome engineering in Saccharomyces cerevisiae using CRISPR-Cas systems	Nucleic Acids Res	DiCarlo JE, Norville JE, Mali P, Rios X, Aach J, Church GM	Gibson Assembly®
2011	Comparative characterization of the PvuRts1I family of restriction enzymes and their application in mapping genomic 5-hydroxymethylcytosine	Nucleic Acids Res	Wang H, Guan S, Quimby A, Cohen-Karni D, Pradhan S, Wilson G, Roberts RJ, Zhu Z, Zheng Y
2016	mRNA capping: biological functions and applications.	Nucleic Acids Res	Ramanathan, A., Robb, G.B. and Chan, S.H.
2016	Type II restriction endonucleases - a historical perspective and more.	Nucleic Acids Res	Pingoud, A., Wilson, G.G. and Wende, W.
2015	A high-throughput assay for the comprehensive profiling of DNA ligase fidelity	Nucleic Acids Res	Lohman GJ, Bauer RJ, Nichols NM, Mazzola L, Bybee J, Rivizzigno D, Cantin E, Evans TC Jr.
2015	REBASE - A database for DNA restriction and modification: enzymes, genes and genomes	Nucleic Acids Res	Roberts, R.J., Vincze, T., Posfai, J., Macelis, D.
2015	Small RNA-mediated DNA (cytosine-5) methyltransferase 1 inhibition leads to aberrant DNA methylation	Nucleic Acids Res	Zhang, G., Esteve, P.O., Chin, H.G., Terragni, J., Dai, N., Correa, I.R. Jr. and Pradhan, S.
2015	Specificity of the ModAll, ModA12 and ModD1 epigenetic regulator N6-adenine DNA methyltransferases of Neisseria Meningitidis	Nucleic Acids Res	Seib, K.L., Jen, F.E., Tan, A., Scott, A.L., Kumar, R., Power, P.M., Chen, L.T., Wu, H.J., Wang, A.H., Hill, D.M., Luyten, Y.A., Morgan, R.D., Roberts, R.J., Maiden, M.C., Boitano, M., Clark, T.A., Korlach, J., Rao, D.N. and Jennings, M.P.
2015	Structure of Naegleria Tet-like dioxygenase (NgTet1) in complexes with a reaction intermediate 5-hydroxymethylcytosine DNA.	Nucleic Acids Res	Hashimoto H, Pais JE, Dai N, Corrêa IR Jr, Zhang X, Zheng Y, Cheng X.
2015	Binding of 14-3-3 reader proteins to phosphorylated DNMT1 facilitates	Nucleic Acids Res	Estève P., Zhang G., Ponnaluri V., Kanneganti	Epigenetics
2015	Adapting capillary gel electrophoresis as a senisitive, high-throughput method to accelerate characterization of nucleic acid metabolic enzymes	Nucleic Acids Res	Greenough, L., Schermerhorn K.M., Mazzola, L., Bybee, J., Rivizzigno, D., Cantin, E., Slatko, B.E., Gardner, A.F.
2015	Highly efficient CRISPR/Cas9-mediated TAR cloning of genes and chromosomal loci from complex genomes in yeast	Nucleic Acids Res	Lee, NC., Larionov, V., Kouprina, N.
2014	Boronic acid-mediated polymerase chain reaction for gene- and fragment-specific detection of 5-hydroxymethylcytosine	Nucleic Acids Res	Zhao C, Wang H, Zhao B, Li C, Yin R, Song M, Liu B, Liu Z, Jiang G
2014	The complex methylome of the human gastric pathogen Helicobacter pylori	Nucleic Acids Res	Krebes J, Morgan RD, Bunk B, Spröer C, Luong K, Parusel R, Anton BP, König C, Josenhans C, Overmann J, Roberts RJ, Korlach J, Suerbaum S
2014	Structure of 5-hydroxymethylcytosine-specific restriction enzyme AbaSI in complex with DNA	Nucleic Acids Res	Horton JR, Borgaro JG, Griggs RM, Quimby A, Guan S, Zhang X, Wilson GG, Zheng Y, Zhu Z, Cheng X
2014	Prospective identification of parasitic sequences in phage display screens	Nucleic Acids Res	Matochko WL, Cory Li S, Tang SK, Derda R	Phage Display
2014	Trypanosome MKT1 and the RNA-binding protein ZC3H11: interactions and potential roles in post-transcriptional regulatory networks	Nucleic Acids Res	Singh A, Minia I, Droll D, Fadda A, Clayton C, Erben E
2014	Type I restriction enzymes and their relatives	Nucleic Acids Res	Loenen WA, Dryden DT, Raleigh EA, Wilson GG
2014	The other face of restriction: modification-dependent enzymes.	Nucleic Acids Res	Loenen, W.A., Raleigh, E.A.	Restriction Enzyme Digestion,Restriction Enzyme Digestion
2014	Type II restriction endonucleases-a historical perspective and more	Nucleic Acids Res	Pingoud A, Wilson GG, Wende W
2014	Highlights of the DNA cutters: a short history of the restriction enzymes	Nucleic Acids Res	Loenen WA, Dryden DT, Raleigh EA, Wilson GG, Murray NE
2014	Engineering nicking enzymes that preferentially nick 5-methylcytosine-modified DNA	Nucleic Acids Res	Gutjahr A, Xu SY	Gibson Assembly®
2007	Rebase--enzymes and genes for DNA restriction and modification	Nucleic Acids Res	Roberts, R.J., Vincze, T., Posfai, J., Macelis, D.
2015	Small RNA-mediated DNA (cytosine-5) methyltransferase 1 inhibition leads to aberrant DNA methylation	Nucleic Acids Res	Zhang G et al.
2015	Structure of Naegleria Tet-like dioxygenase (NgTet1) in complexes with a reaction intermediate 5-hydroxymethylcytosine DNA	Nucleic Acids Res	Hashimoto H et al.
2018	The non-specific adenine DNA methyltransferase M.EcoGII.	Nucleic Acids Res	Murray IA
2016	Binding of 14-3-3 reader proteins to phosphorylated DNMT1 facilitates aberrant DNA methylation and gene expression	Nucleic Acids Res	Estève PO
2015	Small RNA-mediated DNA (cytosine-5) methyltransferase 1 inhibition leads to aberrant DNA methylation	Nucleic Acids Res	Zhang G et al
2015	Structure of Naegleria Tet-like dioxygenase (NgTet1) in complexes with a reaction intermediate 5-hydroxymethylcytosine DNA	Nucleic Acids Res	Hashimoto H et al
2004	A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes.	Nucleic Acids and Molecular Biology	Roberts, R.J., Belfort, M.et al.
2005	Harnessing Inteins for Protein Purification and Characterization.	Nucleic Acids and Molecular Biology	Chong, S.and Xu.M.Q.
1993	Compilation of Commercially Available Nucleases	Nucleases	Schildkraut, I.
1993	Type II Restriction Endonucleases	Nucleases	Roberts, R.J.and Halford, S.E.
1993	The Restriction Enzymes	Nucleases	Roberts, R.J.and Macelis, D.
2002	Efficient isolation of targeted Caenorhabditis elegans deletion strains using highly thermostable restriction endonucleases and PCR.	Nucl.Acids.Res.	Wei, A., Yuan, A., Fawcett, G., Butler, A., Davis, T., Xu, S.Y.and Salkoff, L.
2011	Natural and engineered nicking endonucleases--from cleavage mechanism to engineering of strand-specificity.	Nucl.Acids.Res.	Chan, S.H., Stoddard, B.L.and Xu, S.Y.
2011	Asymmetric DNA recognition by the OkrAI endonuclease, an isoschizomer of BamHI.	Nucl.Acids.Res.	Vanamee, E.S., Viadiu, H., Chan, S.H., Ummat, A., Hartline, A.M., Xu, S.Y.and Aggarwal, A.K.
2011	A type IV modification-dependent restriction enzyme SauUSI from Staphylococcus aureus subsp.aureus USA300.	Nucl.Acids.Res.	Xu, S.Y., Corvaglia, A.R., Chan, S.H., Zheng, Y.and Linder, P.
2011	Characterization and crystal structure of the type IIG restriction endonuclease RM.BpuSI.	Nucl.Acids.Res.	Shen, B.W., Xu, D., Chan, S.H., Zheng, Y., Zhu, Z., Xu, S.Y.and Stoddard, B.L.
2011	Cleavage of a model DNA replication fork by a methyl-specific endonuclease.	Nucl.Acids.Res.	Ishikawa, K., Handa, N.Sears, L., Raleigh, E.A.and Kobayashi, I.
2006	Simultaneous amplification and screening of whole plasmids using the T7 bacteriophage replisome.	Nucl.Acids.Res.	Xu, Y., Kim, H-J., Kays, A., Rice, J.and Kong, H.
2006	DNA nicking by HinP1I endonuclease: bending, base flipping and minor groove expansion.	Nucl.Acids.Res.	Horton, J.R., Zhang, X., Maunus, R., Yang, Z., Wilson, G.G., Roberts, R.J.and Cheng, X.
2005	Structure of HinP1I endonuclease reveals a striking similarity to the monomeric restriction enzyme MspI.	Nucl.Acids.Res.	Yang, Z., Horton, J.R., Maunus, R., Wilson, G.G., Roberts, R.R.and Cheng, X.
2005	REBASE - restriction enzymes and DNA methyltransferases.	Nucl.Acids.Res.	Roberts, R.J., Vincze, T., Posfai, J.and Macelis, D.
1984	A type II restriction endonuclease with an eight nucleotide specificity from Streptomyces fimbriatus.	Nucl.Acids.Res.	Qiang, B.Q., and Schildkraut, I.
1994	Direct selection of binding proficient/catalytic deficient variants of BamHI endonuclease.	Nucl.Acids.Res.	Dorner, L.F., and Schildkraut, I.
1994	REBASE - restriction enzymes and methylases	Nucl.Acids.Res.	Roberts, R.J.and Macelis, D.
2007	USER friendly DNA engineering and cloning method by uracil excision	Nucl.Acids.Res.	Bitinaite, J., Rubino, M., Varma, K.H., Schildkraut, I., Vaisvila, R.and Vaiskunaite, R.
2007	Selection of restriction endonucleases using artificial cells.	Nucl.Acids.Res.	Zheng, Y.and Roberts, R.
2007	Catalytic domain of restriction endonuclease BmrI as a cleavage module for engineering endonucleases with novel substrate specificities.	Nucl.Acids.Res.	Chan, S-H, Boa, Y., Ciszak, E., Laget, S.and Xu, S-Y.
2007	Automethylation of G9a and its implication in wider substrate specificity and HP1 binding.	Nucl.Acids.Res.	Chin, H.G., Esteve, P.O., Pradhan, M., Benner, J., Patnaik, D., Carey, M.F., and Pradhan, S.
2007	Discovery of natural nicking endonucleases Nb.BsrDI and Nb.BtsI and engineering of top-strand nicking variants from BsrDI and BtsI.	Nucl.Acids.Res.	Xu, S.Y., Zhu, Z., Zhang, P., Chan, S.H., Samuelson, J., Xiao, J., Ingalls D.and Wilson, G.
2010	REBASE – a database for DNA restriction and modification: enzymes, genes and genomes.	Nucl.Acids.Res.	Roberts, R.J., Vincze, T., Posfai, J., Macelis, D.
2010	Sequence-specific cleavage of RNA by Type II restriction enzymes.	Nucl.Acids.Res.	Murray, I.A., Stickel, S.K.and Roberts, R.J.
2010	In vitro genetic reconstruction of bacterial transcription initiation by coupled synthesis and detection of RNA polymerase holoenzyme.	Nucl.Acids.Res.	Asahara, H.and Chong, S.
2010	Asymmetric DNA recognition by the OkrAI endonuclease, an isoschizomer of BamHI.	Nucl.Acids.Res.	Vanamee, E.S., Viadiu, H., Chan, S.H., Ummat, A., Hartline, A.M., Xu, S.Y.and Aggarwal, A.K.
2010	Functional characterization of the YmcB and YqeV tRNA methylthiotransferases of Bacillus subtilis.	Nucl.Acids.Res.	Anton, B.P., Russell, S.P., Vertrees, J., Kasif, S., Raleigh, E.A., Limbach, P.A.and Roberts, R.J.
2010	Engineering Nt.BtsCI and Nb.BtsCI nicking enzymes and applications in generating long overhangs.	Nucl.Acids.Res.	Too, P.H., Zhu, Z., Chan, S.H.and Xu, S.Y.
2009	Rational Engineering of Type II Restriction Endonuclease DNA Binding and Cleavage Specificity.	Nucl.Acids.Res.	Morgan, R.D.and Luyten, Y.A.
2009	The MmeI Family: Type II Restriction-Modificaton Enzymes That Employ Single-Strand Modification for Host Protection.	Nucl.Acids.Res.	Morgan, R.D., Dwinell, E.A., Bhatia, T.K., Lang, E.M.and Luyten, Y.A.
2009	UHRF1 binds G9a and participates in p21 transcriptional regulation in mammalian cells.	Nucl.Acids.Res.	Kim, J.K., Estève, P.O., Jacobsen, S.E.and Pradhan, S.
2008	MmeI: a minimal Type II restriction-modification system that only modifies one DNA strand for host protection.	Nucl.Acids.Res.	Morgan, R.D., Bhatia, T.K., Lovasco, L.and Davis, T.B.
2008	The structure of SgrAI bound to DNA; recognition of an 8 base pair target.	Nucl.Acids.Res.	Dunten, P.W., Little, E.J., Gregory, M.T., Manohar, V.M., Dalton, M., Hough, D., Bitinaite, J., Horton, N.C.
2008	The fidelity Index provides a systematic quantitation of star activity of DNA restriction endonucleases.	Nucl.Acids.Res.	Wei, H., Therrien, C., Blanchard, A., Guan, S.and Zhu, Z.
2001	AdoMet-dependent methylation, DNA methyltransferases and base flipping.	Nucl.Acids Res.	Cheng, X.and Roberts, R.J.
2001	The nicking endonuclease N.BstNBI is closely related to Type IIs restriction endonucleases MlyI and PleI.	Nucl.Acids Res.	Higgins, L.S., Besnier, C.and Kong H.
2001	REBASE-restriction enzymes and methylases.	Nucl.Acids Res.	Roberts, R.J., and Macelis, D.
2003	NEBcutter: A program to cleave DNA with restriction enzymes.	Nucl.Acids Res.	Vincze, T., Posfai, J.and Roberts, R.J.
2003	REBASE Restriction enzymes and methyltransferases.	Nucl.Acids Res.	Roberts, R.J., Vincze, T., Posfai, J.and Macelis, D.
2003	Revised Escherichia coli selenocysteine insertion requirements determined by in vivo screening of combinatorial libraries of SECIS variants.	Nucl.Acids Res.	Sandman, K.E., Tardiff, D.F., Neely, L.A.and Noren, C.J.
2003	A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes.	Nucl.Acids Res.	Roberts, R.J., Belfort, M.et al.
2002	Functional analysis of iceA1, a CATG-recognizing restriction endonuclease gene in Helicobacter pylori.	Nucl.Acids Res.	Xu, Q., Morgan, R.D., Roberts, R.J., Xu, S.Y., van Doorn, L.J., Donahue, J.P., Miller, G.G.and Blaser, M.J.
2000	A simple in vitro Tn7-based transposition system with low target site selectivity for genome and gene analysis.	Nucl.Acids Res.	Biery, M.C., Stewart, F.J., Stellwagen, A.E., Raleigh, E.A.and Craig, N.L.
2000	Functional analysis of putative restriction-modification system genes in the Helicobacter pylori J99 genome.	Nucl.Acids Res.	Kong, H., Lin, L.F., Porter, N., Stickel, S.Byrd, D., Posfai, J.and Roberts R.J.
2000	The efficiency of Escherichia coli selenocysteine insertion is influenced by the immediate downstream nucleotide.	Nucl.Acids Res.	Sandman, K.E.and Noren, C.J.
2000	REBASE-restriction enzymes and methylases.	Nucl.Acids Res.	Roberts, R.J.and Macelis, D.
1998	REBASE-restriction enzymes and methylases.	Nucl.Acids Res.	Roberts, R.J.and Macelis, D.
1998	Chemical display of thymine residues flipped out by DNA methyltransferases.	Nucl.Acids Res.	Serva, S., Weinhold, E., Roberts R.J.and Klimasauskas S.
1998	Utilizing the C-terminal cleavage activity of a protein splicing element to purify recombinant proteins in a single chromatographic step.	Nucl.Acids Res.	Chong, S., Montello, G.E., Zhang, A., Cantor, E.J., Liao, W., Xu, M.-Q.and Benner, J.
1999	REBASE-restriction enzymes and methylases.	Nucl.Acids Res.	Roberts, R.J.and Macelis, D.
2004	Cassette-like variation of restriction enzyme genes in Escherichia coli C and relatives.	Nucl.Acids Res.	Sibley, M.H.and Raleigh, E.A.
2004	Cloning of CviPII nicking and modification system from chlorella virus NYs-1 and application of Nt.CviPII in random DNA amplification.	Nucl.Acids Res.	Chan, S.H., Zhu, Z., Van Etten, J.L.and Xu, S.Y.
2004	Recognition of DNA substrates by T4 polynucleotide kinase.	Nucl.Acids Res.	Eastberg, J., Pelletier, J.and Stoddard, B.
2004	The isolation of strand-specific nicking endonucleases from a randomized SapI expression library.	Nucl.Acids Res.	Samuelson, J.C., Zhu, Z.and Xu, S.Y.
2013	Two new restriction endonucleases from Proteus vulgaris.	Nucl.Acids Res.	Gingeras, T.R., Greenough, L., Schildkraut, I., and Roberts, R.J.
2011	Simple and efficient synthesis of 5â€² pre-adenylated DNA using thermostable RNA ligase.	Nucl.Acids Res.	Zhelkovsky, A.M.and McReynolds, L.A.
2011	Comparative characterization of the PvuRts1I family and application in mapping genomic 5-hydroxymethylcytosine.	Nucl.Acids Res.	Wang, H., Guan, S., Quimby, A., Cohen-Karni, D., Pradhan, S., Wilson, G.G., Roberts, R.J., Zhu, Z.and Zheng, Y.
2005	A single catalytic domain of the junction-resolving enzyme T7 endonuclease I is a non-specific nicking endonuclease.	Nucl.Acids Res.	Guan, C.and Kumar, S.
2005	Characterization of the Type III restriction endonuclease PstII from Providencia stuartii.	Nucl.Acids Res.	Sears, A., Peakman, L.J., Wilson, G.G.and Szczelkun, M.D.
2005	Functional analysis of the N- and C-terminus of mammalian G9a histone H3 methyltransferase.	Nucl.Acids Res.	Esteve, P.O., Patnaik, D., Chin, H.G., Benner, J., Teitell, M.A.and Pradhan, S.
1995	Functional analysis of Gln-237 mutants of HhaI methyltransferase.	Nucl.Acids Res.	Mi, S., Alonso, D., and Roberts, R.J.
1995	Orphon spliced-leader sequences form part of a repetitive element in Angiostrongylus cantonensis.	Nucl.Acids Res.	Joshua, G.W., Perler, F.B., and Wang, C.C.
1995	M.Hhal binds tightly to substrates containing mismatches at the target base.	Nucl.Acids Res.	Klimasauskas, S.and Roberts, R.J.
1981	Two new restriction endonucleases from Proteus vulgaris.	Nucl.Acids Res.	Gingeras, T.R., Greenough, L., Schildkraut, I., and Roberts, R.J.
1993	REBASE-restriction enzymes and methylases.	Nucl.Acids Res.	Roberts, R.J.and Macelis, D.
1993	A unique restriction endonuclease, BcgI, from Bacillus coagulans.	Nucl.Acids Res.	Kong, H., Morgan, R.D., Maunus, R.E., and Schildkraut, I.
1993	The M.AluI DNA-(cytosine C5)-methyltransferse has an unusually large, partially dispensable, variable region.	Nucl.Acids Res.	Zhang, B., Tao, T., Wilson, G.G., and Blumenthal, R.M.
1996	REBASE--restriction enzymes and methylases.	Nucl.Acids Res.	Roberts, R.J.and Macelis, D.
1996	Bael, another unusual Bcgl-like restriction-endonuclease.	Nucl.Acids Res.	Sears, L.E., Zhou, B., Aliotta, J.M., Morgan, R.D., and Kong, H.M.
1986	Two unique restriction endonucleases from Neisseria lactamica.	Nucl.Acids Res.	Qiang, B.Q., and Schildkraut, I.
1986	Cloning the DdeI restriction-modification system using a two-step method.	Nucl.Acids Res.	Howard, K.A., Card, C., Benner, J.S., Callahan, H.L., Maunus, R., Silber, K., Wilson, G., and Brooks, J.E.
1984	Alteration of apparent restriction endonuclease recognition specificities by DNA methylases.	Nucl.Acids Res.	Nelson, M., Christ, C., and Schildkraut, I.
1987	Nucleotide sequence of the DdeI restriction-modification system and characterization of the methylase protein.	Nucl.Acids Res.	Sznyter, L.A., Slatko, B., Moran, L., O'Donnell, K.H., and Brooks, J.E.
1987	Isolation and Identification of restriction endonuclease BstFI	Nucl.Acids Res.	Kong, H and Chen, Z.
1987	The effect of site-specific methylation on restriction-modification enzymes.	Nucl.Acids Res.	Nelson, M., and McClelland, M.
1987	The cleavage site for the restriction endonucleases BanI and HgiCI is 5' ...G^GPyPuCC ...3'.	Nucl.Acids Res.	Schildkraut, I., Lynch, J., and Morgan, R.
1987	Restriction endonucleases for pulsed field mapping of bacterial genomes.	Nucl.Acids Res.	McClelland, M., Jones, R., Patel, Y., and Nelson, M.
1987	Cloning, sequencing and expression of the TaqI restriction-modification system.	Nucl.Acids Res.	Slatko, B.E., Benner, J.S., Jager-Quinton, T., Moran, L.S., Simcox, T.G., VanCott, E.M., and Wilson, G.G.
1987	A unique type II restriction endonuclease from Acinetobacter lwoffi N.	Nucl.Acids Res.	Morgan, R.D., Dalton, M., and Stote, R.
1991	Organization of restriction-modification systems.	Nucl.Acids Res.	Wilson, G.G.
1991	Overexpression, purification and crystallization of BamHI endonuclease.	Nucl.Acids Res.	Jack, W.E., Greenough, L., Dorner, L.F., Xu, S.Y., Strzelecka, T., Aggarwal, A.K., and Schildkraut, I.
1991	BfaI, a new MaeI isoschizomer from Bacteroides fragilis, recognizes the sequence 5' C^TAG 3'.	Nucl.Acids Res.	Reinecke, S.N., and Morgan, R.D.
1991	Characterization of the cloned BamHI restriction modification system: its nucleotide sequence, properties of the methylase, and expression in heterologous hosts.	Nucl.Acids Res.	Brooks, J.E., Nathan, P.D., Landry, D., Sznyter, L.A., Waite-Rees, P., Ives, C.L., Moran, L.S., Slatko, B.E., and Benner, J.S.
1992	ApoI, a unique restriction endonuclease from Arthrobacter protophormiae which recognizes 5' RAATTY-3'.	Nucl.Acids Res.	Polisson, C., and Robinson, D.
1992	Protein splicing removes intervening sequences in an archaea DNA polymerase.	Nucl.Acids Res.	Hodges, R.A., Perler, F.B., Noren, C.J., and Jack, W.E.
1990	Cloning and characterization of the HpaII methylase gene.	Nucl.Acids Res.	Card, C.O., Wilson, G.G., Weule, K., Hasapes, J., Kiss, A., and Roberts, R.J.
1990	Cloning, characterization, and expression in Escherichia coli of the gene coding for the CpG DNA methylase from Spiroplasma sp.strain MQ1(M.SssI).	Nucl.Acids Res.	Renbaum, P., Abrahamove, D., Fainsod, A., Wilson, G.G., Rottem, S., and Razin, A.
1990	Cleavage at the twelve-base-pair sequence 5'-TCTAGATCTAGA-3' using M.XbaI (TCTAGm6A) methylation and DpnI (Gm6A/TC) cleavage.	Nucl.Acids Res.	Patel, Y., Van Cott, E., Wilson, G.G., and McClelland, M.
1990	Altered specificity of restriction endonucleases HinfI.	Nucl.Acids Res.	Petronzio, T., and Schildkraut, I.
1990	AciI, a unique restriction endonuclease from Arthrobacter citreus which recognizes 5' CCGC3'.	Nucl.Acids Res.	Polisson, C., and Morgan, R.D.
1990	Identification of a new type II restriction endonuclease BsaAI.	Nucl.Acids Res.	Kong, H., Morgan, R.D., and Chen, Z.
1990	A new type II restriction endonuclease, BsmAI, from Bacillus stearothermophilus.	Nucl.Acids Res.	Kong, H., Morgan, R.D., and Chen, Z.
1985	Nucleotide sequence of the PaeR7 restriction/modification system and partial characterization of its protein products.	Nucl.Acids Res.	Theriault, G., Roy, P.H., Howard, K.A., Benner, J.S., Brooks, J.S., Waters, A.F., and Gingeras, T.R.
1985	The effect of site specific methylation on restriction endonuclease digestion.	Nucl.Acids Res.	McClelland, M., and Nelson, M.
1985	Purification of MboII methylase (GAAGmA) from Moraxella bovis: site specific cleavage of DNA at nine and ten base pair sequences.	Nucl.Acids Res.	McClelland, M., Nelson, M., and Cantor, C.R.
1994	Protein splicing elements: inteins and exteins - a definition of terms and recommended nomenclature.	Nucl.Acids Res.	Perler, F.B., Davis, E.O., Dean, G.E., Gimble, F.S., Jack, W.E., Neff, N., Noren, C.J., Thorner, J., and Belfort, M.
1994	The DNA (cytosine-5) methyltransferases.	Nucl.Acids Res.	Kumar, S., Cheng, X., Klimasauskas, S., Sha, M., Posfai, J., Roberts, R.J., and Wilson, G.G.
1994	The 'endo-blue method' for direct cloning of restriction endonuclease genes in E.coli.	Nucl.Acids Res.	Fomenkov, A., Xiao, J.P., Dila, D., Raleigh, E., and Xu, S.Y.
1989	MscI, a type II restriction endonuclease from Micrococcus species which recognizes 5' TGGCCA 3'.	Nucl.Acids Res.	Polisson, C.
1989	DrdI, a unique restriction endonuclease from Deinococcus radiodurans which recognizes 5'GACN6GTC3'.	Nucl.Acids Res.	Polisson, C., and Morgan, R.D.
1989	Cloning the BamHI restriction modification system.	Nucl.Acids Res.	Brooks, J.E., Benner, J.S., Heiter, D.F., Silber, K.R., Sznyter, L.A., Jager-Quinton, T., Moran, L.S., Slatko, B.E., Wilson, G.G., and Nwankwo, D.O.
1988	AseI, a restriction endonuclease from Aquaspirillum serpens which recognizes 5'ATTAAT3'.	Nucl.Acids Res.	Polisson, C., and Morgan, R.D.
1988	BsrI, a unique restriction endonuclease from Bacillus stearothermophilus which recognizes 5'ACTGG3'.	Nucl.Acids Res.	Polisson, C., and Morgan, R.D.
1988	A site-specific single strand endonuclease activity induced by NYs-1 virus infection of a Chlorella-like green alga.	Nucl.Acids Res.	Xia, Y., Morgan, R., Schildkraut, I., and Van Etten, J.L.
1988	EarI, a restriction endonuclease from Enterobacter aerogenes which recognizes 5'CTCTTC3'.	Nucl.Acids Res.	Polisson, C., and Morgan, R.D.
1988	McrA and McrB restriction phenotypes of some E.coli strains and implications for gene cloning.	Nucl.Acids Res.	Raleigh, E.A., Murray, N.E., Revel, H., Blumenthal, R.M., Westaway, D., Reith, A.D., Rigby, P.W.J., Elhai, J., and Hanahan, D.
1988	MseI, a unique restriction endonuclease from Micrococcus species which recognizes 5'T^TAA 3'.	Nucl.Acids Res.	Morgan, R.D.
1997	Cloning of the BssHII restriction-modification system in Escherichia coli: BssHII methyltransferase contains circularly permuted cytosine-5 methyltransferase motifs.	Nucl.Acids Res.	Xu, S.Y., Xiao, J.P., Posfai, J., Maunus, R., and Benner, J
1997	Substrate DNA and cofactor regulate the activities of a multi-functional restriction-modification enzyme, Bcgl.	Nucl.Acids Res.	Kong, H., and Smith, C.L.
1997	REBASE-restriction enzymes and methylases.	Nucl.Acids Res.	Roberts, R.J.and Macelis, D.
1997	DNA containing 4'-thio-2' deoxycytidine inhibits methylation by HhaI methyltransferase.	Nucl.Acids Res.	Kumar, S., Horton, J.R., Jones, G.D., Walker, R.T., Roberts, R.J., and Cheng, X.
1997	Homing endonucleases: keeping the house in order.	Nucl.Acids Res.	Belfort, M., and Roberts, R.J.
2012	A versatile element for gene addition in bacterial chromosomes	Nucl.Acids Res.	Sibley, M.H.and Raleigh, E.A.
2012	Polbase: a repository of biochemical, genetic and structural information about DNA polymerases.	Nucl.Acids Res.	Langhorst, B.W., Jack, W.E., Reha-Krantz, L.and Nichols, N.M.
2008	Development of a dual-luciferase reporter system for in vivo visualization of MicroRNA biogenesis and posttranscriptional regulation	Nucl. Med.	Lee, J.Y., Kim, S., Hwang do, W., Jeong, J.M., Chung, J.K., Lee, M.C. and Lee, D.S.J.
2008	Development of a dual-luciferase reporter system for in vivo visualization of MicroRNA biogenesis and posttranscriptional regulation	Nucl. Med.	Lee, J.Y., Kim, S., Hwang do, W., Jeong, J.M.,Chung, J.K., Lee, M.C., Lee, D.S.J.
2011	Comparitive characterization of the PvuRts11 family and application in mapping genomic 5-hydroxymethylcytosine	Nucl. Acids Res.
2016	COMBREX-DB: An experiment centered database of protein function: knowledge, predictions and knowledge gaps.	Nucl. Acids Res.	Chang, Y.-C., Hu, Z., Rachlin, J., Anton, B.P., Kasif, S., Roberts, R.J. and Steffen, M.
2012	Characterization of DNA methyltransferase specificities using single-molecule, real-time DNA sequencing	Nucl. Acids Res.	Clark, T.A., Murray, I.A., Morgan, R.D., Kislyuk, A.O., Spittle, K.E., Boitano, M., Fomenkov, A., Roberts, R.J. and Korlach, J.
2010	A unique family of Mrr-like modification-dependent restriction endonucleases	Nucl. Acids Res.	Zheng, Y. et al.
2017	DNA target recognition domains in the Type I restriction and modification systems of Staphylococcus aureus	Nucl. Acids Res.	Cooper, L.P., Roberts, G.A., White, J.H., Luyten, Y.A., Bower, E.K., Morgan, R.D., Roberts, R.J., Lindsay, J.A., Dryden, D.T.
2017	DNA recognition by the SwaI restriction endonuclease involves unusual distortion of an 8 base pair A:T-rich target	Nucl. Acids Res.	Shen, B.W., Heiter, D.F., Lunnen, K.D., Wilson, G.G., Stoddard, B.L.
2013	Natural Zinc Ribbon HNH Endonucleases and Engineered Zinc Finger Nicking Endonuclease	Nucl Acids Res.	Xu, S.Y. and Gupta, Y.K.
2002	Acyclic and dideoxy teminator preferences denote divergent sugar recognition by archaeon and Taq DNA polymerases.	Nuc.Acids Res.	Gardner, A.F.and Jack, W.E.
2002	InBase, the Intein Database.	Nuc.Acids Res.	Perler, F.B.
2000	InBase, the Intein Database.	Nuc.Acids Res.	Perler, F.B.
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2017	Expression and comparative characterization of complete and C-terminally truncated forms of saccharifying a-amylase from Lactobacillus plantarum S21.	International Journal of Biological Macromolecules	Kanpiengjai A, Nguyen TH, Haltrich D, Khanongnuch C.
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2010	Novel peptide-dendrimer conjugates as drug carriers for targeting nonsmall cell lung cancer	Int. J. Nanomedicine	Liu, J. et al.
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2015	Terminal Mannose Residues in Seminal Plasma Glycoproteins of Infertile Men Compared to Fertile Donors	Int J Mol Sci	Beata O., Jarząb A., Kratz E., Zimmer M., Gamian A., Ferens-Sieczkowska M.
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2010	Genome-wide mapping of alternative splicing in Arabidopsis thaliana	Genome Res	Filichkin, S.A., Priest, H.D., Given, S.A., et al
2016	Illuminating uveitis: metagenomic deep sequencing identifies common and rare pathogens.	Genome Medicine	Doan, T. et al.
2017	The advantages of SMRT™ sequencing.	Genome Biology	Roberts, R.J., Carneiro, M.O., Schatz, M.C.
2016	Taxonomer: an interactive metagenomics analysis portal for universal pathogen detection and host mRNA expression profiling	Genome Biology	Flygare, S. et al.
2017	NicE-seq: High resolution open chromatin profiling	Genome Biology	Ponnaluri, V.K.C., Zhang, G., Estève, P.-O., Spracklin, G., Sian, S., Xu, S.-Y., Benoukraf, T., Pradhan, S.
2013	The advantages of SMRT™ sequencing.	Genome Biology	Roberts, R.J., Carneiro, M.O., Schatz, M.C.
2016	Host-Associated Genomic Features of the Novel Uncultured Intracellular Pathogen Ca. Ichthyocystis Revealed by Direct Sequencing of Epitheliocysts.	Genome Biol. Evol.	Qi, W. et al.
2002	Genomic functional annotation using co-evolution profiles of gene clusters.	Genome Biol.	Zheng, Y., Roberts, R.J.and Kasif, S.
2011	Genome-wide mapping of the sixth base	Genome Biol.	Diep, D. and Zhang, K.
2015	Differential connectivity of splicing activators and repressors to the human spliceosome	Genome Biol.	Akerman, M., Fregoso, Ol., Das, S., Ruse, C., Jensen, M.A., Pappin, D.J., Zhang, M.Q., Krainer, A.R.
2013	Fully assembled genome sequence for Salmonella enterica subsp. Enterica Serovar Javiana CFSAN001992.	Genome Announcements	Allard, M.W. Muruvanda, T., Strain, E., Timme, R., Luo, Y., Wang, C., Keys, C.E., Payne, J., Cooper, T. Luong, K., Song, Y., Chin, C.-S., Korlach, J., Roberts, R.J., Evans, P., Musser, S.M., Brown, E.W.
2016	Complete genome and methylome sequences of two Salmonella	Genome Announcements	Yao, K., Muruvanda, T., Roberts, R.J., Payne, J., Allard, M.W., Hoffmann, M.
2016	Complete genome sequence of Brevibacterium linens SMQ-1335.	Genome Announcements	De Melo, A., Labrie, S., Dumaresq, J., Roberts, R., Tremblay, D. and Moineau, S.
2018	Complete genome sequence and methylome analysis of Bacillus caldolyticus NEB414.	Genome Announcements	Fomenkov, A., Vincze, T., Mersha, F., Roberts, R.J.
2017	Genome Announce	Genome Announce.	Fomenkov, A., Akimov, V.N., Vasilyeva, L.V., Andersen, D.T., Vincze, T., Roberts, R.J.
2017	Complete genome and methylome sequences of Salmonella enterica subsp. enterica Serovars Typhimurium, Saintpaul, and Stanleyville from the SARA/SARB collection	Genome Announce	Yao, K., Roberts, R.J., Allard, M.W., Hoffmann, M.
2016	Complete Genome Sequence of the Engineered Escherichia coli SHuffle Strains and Their Wild-Type Parents	Genome Announc.	Anton, B.P., Fomenkov, A., Raleigh, E.A. and Berkmen, M.
2016	Complete Genome Sequence of a Strain of Azospirillum thiophilum Isolated from a Sulfide Spring.	Genome Announc.	Fomenkov, A., Vincze, T., Grabovich, M., Anton, B.P., Dubinina, G., Orlova, M., Belousova, E. and Roberts, R.J.
2016	Complete Genome Sequence and Methylome Analysis of Aeromonas hydrophila Strain YL17, Isolated from a Compost Pile.	Genome Announc.	Lim, Y.L., Roberts, R.J., Ee, R., Yin, W.F. and Chan, K.G.
2016	Complete Genome and Methylome Sequences of Salmonella enterica subsp. enterica Serovar Panama (ATCC 7378) and Salmonella enterica subsp. enterica Serovar Sloterdijk (ATCC 15791).	Genome Announc.	Yao, K., Muruvanda, T., Roberts, R.J., Payne, J., Allard, M.W. and Hoffmann, M.
2016	omplete Genome Sequence and Methylome Analysis of Bacillus globigii ATCC 49760.	Genome Announc.	Morgan, R.D.
2016	Derivative Engineered To Be Deficient in All Methylcytosine and Methyladenine Restriction Systems.	Genome Announc.	Jobling, M.G., Raleigh, E.A. and Frank, D.N.
2016	Complete Genome Sequence of NEB 5-alpha, a Derivative of Escherichia coli K-12 DH5 alpha.	Genome Announc.	Anton, B.P. and Raleigh, E.A.
2016	Complete Genome Sequence of Escherichia coli ER1821R, a Laboratory K-12 Derivative Engineered To Be Deficient in All Methylcytosine and Methyladenine Restriction Systems	Genome Announc.	Jobling, M.G., Raleigh, E.A. and Frank, D.N.
2015	Complete Genome Sequence of the freshwater colorless sulfur bacterium Beggiatoa leptomitiformis neotype strain D-402T	Genome Announc.	Fomenkov, A., Vincze, T., Grabovich, M.Y., Dubinina, G., Orlova, M., Belousova, E., Roberts, R.J.
2015	Complete Genome Sequence of Streptomyces sp. strain CCM_MD2014, isolated from topsoil in Woods Hole, Massachusetts	Genome Announc.	Mariita, R.M., Bhatnagar, S., Hanselmann, K., Hossain, M.J., Korlach, J., Boitano, M., Roberts, R.J., Liles, M.R., Moss, A.G., Leadbetter, J.R., Newman, D.K., Dawson, S.C.
2015	Complete Genome Sequence of Curtobacterium sp. strain MR_MD2014, isolated from topsoil in Woods Hole, Massachusetts	Genome Announc.	Mariita, R.M., Bhatnagar, S., Hanselmann, K., Hossain, M.J., Korlach, J., Boitano, M., Roberts, R.J., Liles, M.R., Moss, A.G., Leadbetter, J.R., Newman, D.K., Dawson, S.C.
2015	Complete Genome Sequence Analysis of Bacillus Subtilis T30	Genome Announc.	Xu, S-Y., Boitano, M., Clark, T.A., Vincze, T., Fomenkov, A., Kumar, S., Too, PH-M., Gonchar, D., Degtyarev, S.K. and Roberts, R.J.
2014	Complete genome sequence of a multidrug resistant Salmonella enterica serovar Typhimurium var. 5-strain isolated from chicken breast	Genome Announc.	Hoffmann, M., Muruvanda, T., Allard, M.W., Korlach, J., Roberts, R.J., Timme, R., Payne, J., McDermott, P.F., Evans, P., Meng, J., Brown, E.W., Zhao, S.
2013	Complete Genome Sequence of a Multidrug-Resistant Salmonella enterica Serovar Typhimurium var. 5- Strain Isolated from Chicken Breast	Genome Announc	Hoffmann M, Muruvanda T, Allard MW, Korlach J, Roberts RJ, Timme R, Payne J, McDermott PF, Evans P, Meng J, Brown EW, Zhao S
2015	Complete genome sequence and methylome analysis of bacillus strain x1	Genome Announc	Fomenkov, A., Lunnen, K.D., Zhu, Z., Anton, B.P., Wilson, G.G., Vincze, T. and Roberts, R.J.
2015	Complete Genome Sequence of Enteroinvasive Escherichia coli O96:H19 Associated with a Severe Foodborne Outbreak	Genome Announc	Pettengill EA, Hoffmann M, Binet R, Roberts RJ, Payne J, Allard M, Michelacci V, Minelli F, Morabito S.
2015	Complete Genome Sequence of Salmonella enterica subsp. enterica Serovar Agona 460004 2-1, Associated with a Multistate Outbreak in the United States	Genome Announc	Hoffmann M, Payne J, Roberts RJ, Allard MW, Brown EW, Pettengill JB
1997	A New Enhancer of Position-Effect Variegation in Drosophila melanogaster Encodes a Putative RNA Helicase That Binds Chromosomes and Is Regulated by the Cell Cycle.	Genetics Society of America	Eberl, D.F., Lorenz, L.J., Melnick, M.B., Sood, V., Lasko, P., and Perrimon, N.
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1989	Genetic and physical mapping of the mcrA (rglA) and mcrB (rglB) loci of Escherichia coli K-12.	Genetics	Raleigh, E.A., Trimarchi, R., and Revel, H.
2010	Mutations in the Caenorhabditis elegans eIF2{beta} Permit Translation Initiation From Non-AUG Start Codons.	Genetics	Zhang, Y, Maduzia, L.L.
2010	The role of elF1 in translation initiation codon solection in Caenorhabditis elegans.	Genetics	Maduzia, L.L., Moreau, A., Poullet, N., Chaffre, S.and Zhang, Y.
2017	Caenorhabditis elegans CES-1 snail represses Pig-1 MELK expression to control asymmetric cell division.	Genetics	Wei, H., Yan, B., Gagneur, J., Conradt, B.
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2016	Folate-/FAD-dependent tRNA methyltransferase from Thermus thermophilus regulates other modifications in tRNA at low temperatures.	Genes Cells	Yamagami, R., Tomikawa, C., Shigi, N., Kazayama, A., Asai, S.I., Takuma, H., Hirata, A., Fourmy, D., Asahara, H., Watanabe, K., Yoshizawa, S. and Hori, H.
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2016	Jmjd2/Kdm4 demethylases are required for expression of Il3ra and survival of acute myeloid leukemia cells	Genes & Dev	Agger, K. et al.
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2007	A small RNA regulates multiple ABC transporter mRNA's by targeting C/A-rich elements inside and upstream of ribosome-binding sites	Gene Dev.	Sharma, C.M., Darfeuille, F., Plantinga, T.H., and Vogel, J.
2001	Construction of a mini-intein fusion system to allow both direct monitoring of soluble protein expression and rapid purification of target proteins.	Gene	Zhang, A., Gonzales, S.M., Cantor, E.J.and Chong, S.
2001	Herbicide resistance from a divided EPSPS protein: the split Synechocystis DnaE intein as an in vivo affinity domain.	Gene	Chen, L., Pradhan, S.and Evans, T.C.Jr.
1999	Characterization of a self-splicing mini-intein and its conversion into autocatalytic N- and C-terminal cleavage elements: facile production of protein building blocks for protein ligation.	Gene	Mathys, S., Evans, T.C., Chute, I.C., Wu, H., Chong, S., Benner, J., Liu, X.Q.and Xu, M.Q.
1999	Alternative splicing creates sex-specific transcripts and truncated forms of the furin protease in the parasite Dirofilaria immitis.	Gene	Jin, J., Poole, C.B., Slatko, B.E.and McReynolds, L.A.
2004	An rxr/usp homolog from the parasite nematode, Dirofilaria immitis.	Gene	Shea, C., Hough, D., Xiao, J., Tzertzinis, G.and Maina, C.V.
2005	Productive interaction of chaperones with substrate protein domains allows correct folding of the downstream GFP domain.	Gene	Zhang, A., Cantor, E.J., Barshevsky, T.and Chong, S.
1995	Purification and characterization of C.BamHI, a regulator of the BamHI restriction-modification system.	Gene	Sohail, A., Ives, C.L., and Brooks, J.E.
1995	Regulation of sCD4-183 gene expression from phage-T7-based vectors in Escherichia coli.	Gene	Kelley, K.C., Huestis, K.J., Austen, D.A., Sanderson, C.T., Donoghue, M.A., Stickel, S.., Kawasaki, E.S., and Osburne, M.S.
1995	Two novel restriction endonucleases from Campylobacter jejuni.	Gene	Vitor, J.M., and Morgan, R.D.
1995	Disruption of the target G-C base-pair by the HhaI methyltransferase.	Gene	Klimasauskas, S., and Roberts, R.J.
1995	Cloning of a gene from Thermus filiformis and characterization of the thermostable nuclease.	Gene	Fomenkov, A., and Xu, S.Y.
1995	Cloning and expression of the NaeI restriction endonuclease-encoding gene and sequence analysis of the NaeI restriction-modification system.	Gene	Taron, C.H., Van Cott, E.M., Wilson, G.G., Moran, L.S., Slatko, B.E., Hornstra, L.J., Benner, J.S., Kucera, R.B., and Guthrie, E.P.
1995	Cloning of a pair of genes encoding isoschizomeric restriction endonucleases from Bacillus species: the BspEI and BspMII restriction and modification systems.	Gene	Nwankwo, D.O.
1995	Crystal structure of the PvuII restriction endonuclease.	Gene	Cheng, X., Balendiran, K., Schildkraut, I., and Anderson, J.E.
1995	Isolation of temperature-sensitive mutants of the BamHI restriction endonuclease.	Gene	Fomenkov, A., and Xu, S.Y.
1995	On the regulation and diversity of restriction in Esherichia coli.	Gene	Kelleher, J.E., and Raleigh, E.A.
1995	Nucleotide sequence of a small plasmid isolated from Acetobacter pasteurianus.	Gene	Fomenkov, A., Xiao, J.P., and Xu, S.Y.
1995	A model for DNA binding and enzyme action derived from crystallographic studies of the TaqI N6-adenine-methyltransferase.	Gene	Schluckebier, G., Labahn, J., Granzin, J., Schildkraut, I., and Saenger, W.
1995	CG and CNG methyltransferase in plants	Gene	Pradhan, S., Houlston, C., Cummings, M., Adams, R.L.P.
1996	The XmnI Restriction-Modification System - Cloning, Expression, Sequence Organization And Similarity Between The R And M-Gene.	Gene	Nwankwo, D.O., Lynch, J.J., Moran, L.S., Fomenkov, A., and Slatko, B.E.
1996	Gene cloning and production of active recombinant Brugia Malayi microfilarial chintinase.	Gene	Southworth, M.W., Fuhrman, J.A., Robbins, P.W., Beauregard, K., and Perler, F.B.
1996	Molecular cloning and expression of NlaIII restriction-modification system in E.coli.	Gene	Morgan, R.D., Camp, R.R., Wilson, G.G., and Xu, S.Y.
1996	Cloning, expression and sequence analysis of the SphI restriction-modification system.	Gene	Guthrie, E.P., Quinton-Jager, T., Moran, L.S., Slatko, B.E., Kucera, R.B., Benner, J.S., Wilson, G.G., and Brooks, J.E.
1984	The cleavage site for the restriction endonuclease EcoRV is 5'-GAT^ATC-3'.	Gene	Schildkraut, I., Banner, C.D.B., Rhodes, C.S., and Parekh, S.
1992	The corrected nucleotide sequences of the TaqI restriction and modification enzymes reveal a thirteen-codon overlap.	Gene	Barany, F., Slatko, B., Danzitz, M., Cowburn, D., Schildkraut, I., and Wilson, G.G.
1990	Nucleotide sequence of the phage l gt11 SacI-KpnI lacZ region.	Gene	Moran, L.S., Maina, C.V., Poole, C.B., and Slatko, B.E.
1994	Cloning, analysis and expression of the HindIII R-M-encoding genes.	Gene	Nwankwo, D.O., Moran, L.S., Slatko, B.E., Waite-Rees, P.A., Dorner, L.F., Benner, J.S., and Wilson, G.G.
1994	Organization and sequence of the SalI restriction-modification system.	Gene	Rodicio, M.R., Quinton-Jager, T., Moran, L.S., Slatko, B.E., and Wilson, G.G.
1994	Histone-encoding genes from Pyrococcus: evidence for members of the HMf family of archaeal histones in a non-methanogenic Archaeon*.	Gene	Sandman, K., Perler, F.B., and Reeve, J.N.
1994	Organization and sequence of the HpaII restriction-modification system and adjacent genes.	Gene	Kulakauskas, S., Barsomian, J.M., Lubys, A., Roberts, R.J., and Wilson, G.G.
1989	Characterization and cloning of MwoI (GCN7GC), a new type-II restriction-modification system from Methanobacterium wolfei.	Gene	Lunnen, K.D., Morgan, R.D., Timan, C.J., Krzycki, J.A., Reeve, J.N., and Wilson, G.G.
1989	M.FokI methylates adenine in both strands of its asymmetric recognition sequence.	Gene	Landry, D., Looney, M.C., Feehery, G.R., Slatko, B.E., Jack, W.E., Schildkraut, I., and Wilson, G.G.
1989	Nucleotide sequence of the FokI restriction-modification system: separate strand-specificity domains in the methyltransferase.	Gene	Looney, M.C., Moran, L.S., Jack, W.E., Feehery, G.R., Benner, J.S., Slatko, B.E., and Wilson, G.G.
1988	An Escherichia coli vector to express and purify foreign proteins by fusion to and separation from maltose-binding protein.	Gene	Maina, C.V., Riggs, P.D., Grandea, A.G.I., Slatko, B.E., Moran, L.S., Tagliamonte, J.A., McReynolds, L.A., and Guan, C.D.
1988	Cloned restriction-modification systems - a review.	Gene	Wilson, G.G.
1988	Characterization of clones of the BamHI methyltransferase gene.	Gene	Nathan, P.D.and Brooks, J.E.
1988	Cloning and analysis of the HaeIII and HaeII methyltransferase genes.	Gene	Slatko, B.E., Croft, R., Moran, L.S., and Wilson, G.G.
1988	Cloning Type II restriction and modification genes.	Gene	Lunnen, K.D., Barsomian, J.M., Camp, R.R., Card, C.O., Chen, S.Z., Croft, R., Looney, M.C., Meda, M.M., Moran, L.S., Nwankwo, D.O., Slatko, B.E., Van Cott, E.M., and Wilson, G.G.
1988	Cloning the FnuDI, NaeI, NcoI and XbaI restriction-modification systems.	Gene	Van Cott, E.M., and Wilson, G.G.
1988	Genetic dissection of the methylcytosine-specific restriction system mcrB of Escherichia coli K-12.	Gene	Dila, D., and Raleigh, E.A.
1988	Cloning and sequencing the HinfI restriction and modification genes.	Gene	Chandrasegaran, S., Lunnen, K.D., Smith, H.O., and Wilson, G.G.
1988	Cloning and expression of the MspI restriction and modification genes.	Gene	Nwankwo, D.O., and Wilson, G.G.
1988	Cloning of the HhaI and HinPI restriction-modification systems.	Gene	Barsomian, J.M., Card, C.O., and Wilson, G.G.
1988	Cloning, purification and characterization of the M.NdeI methyltransferase from Neisseria denitrificans	Gene	Silber, K.R., Polisson, C., Rees, P.A., and Benner, J.S.
1988	Cloning, purification and characterization of the HincII and HindII methyltransferases from Haemophilus influenzae.	Gene	Rees, P.A., Nwankwo, D.O., Wilson, G.G., and Benner, J.S.
1988	The characterization and cloning of the EagI restriction-modification system.	Gene	Sznyter, L.A., and Brooks, J.E.
1988	The Amino Acid Sequence of the Eukaryotic DNA [N6-adenine] Methyltransferase, M-CviBIII, Has Regions of Similarity With the Prokaryotic Isoschizomer M-TaqI and Other DNA [N6-adenine] Methyltransferases.	Gene	Narva, K.E., Van Etten, J.L., Slatko, B.E.and Benner, J.S.
1988	Vectors that facilitate the expression and purification of foreign peptides in Escherichia coli by fusion to maltose-binding protein.	Gene	Guan, C.D., Li, P., Riggs, P.D., and Inouye, H.
1988	Nomenclature for bacterial genes coding for class-II restriction endonucleases and modification methyltransferases.	Gene	Szybalski, W., Blumenthal, R.M., Brooks, J.E., Hattman, S., and Raleigh, E.A.
1988	Cloning and characterization of the BamHI restriction modification system	Gene	Brooks, J.E., Benner, J.S., Silber, K.R., Heiter, D.F., Sznyter, L.A., Jager-Quinton, T., Wilson, G.G., Moran, L.S., Slatko, B.E., Nwankwo, D.O.
1997	Cloning and expression of AatII restriction-modification system in Escherichia coli.	Gene	Nwankwo, D.O., Maunus, R.E., and Xu, S.Y.
1997	Cloning and characterization of the BglII restriction-modification system reveals a possible evolutionary footprint.	Gene	Anton, B.P., Heiter, D.F., Benner, J.S., Hess, E.J., Greenough, L., Moran, L.S., Slatko, B.E., and Brooks, J.E.
1997	Overexpression of BsoBI restriction endonuclease in E.coli, purification of the recombinant BsoBI, and identification of catalytic residues of BsoBI by random mutagenesis.	Gene	Ruan, H., Lunnen, K.D., Pelletier, J.J., and Xu, S.Y.
1997	Identification of a thermophilic plasmid origin and its cloning within a new Thermus-E.coli shuttle vector.	Gene	Wayne, J., and Xu, S.Y.
1997	The Tsp45I restriction-modification system is plasmid-borne within its thermophilic host.	Gene	Wayne, J., Holden, M., and Xu, S.Y.
1997	Single-column purification of free recombinant proteins using a self-cleavable affinity tag derived from a protein splicing element.	Gene	Chong, S., Mersha, F.B., Comb, D.G., Scott, M.E., Landry, D., Vence, L.M., Perler, F.B., Benner, J., Kucera, R.B., Hirvonen, C.A., Pelletier, J.J., Paulus, H., and Xu, M.Q.
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2016	A Genetic Map for the Only Self-Fertilizing Vertebrate.	G3 (Bethesda)	Kanamori A, Sugita Y, Yuasa Y, Suzuki T, Kawamura K, Uno Y, Kamimura K, Matsuda Y, Wilson CA, Amores A, Postlethwait JH, Suga K, Sakakura Y.
2014	Genomics of CpG methylation in developing and developed zebrafish	G3 (Bethesda)	McGaughey DM, Abaan HO, Miller RM, Kropp PA, Brody LC
2016	Increasing Genome Sampling and Improving SNP Genotyping for Genotyping-by-Sequencing with New Combinations of Restriction Enzymes	G3	Fu YB, Peterson G. W., Dong Y	Restriction Enzyme Digestion,Restriction Enzyme Digestion
2008	DNA damage in preserved specimens and tissue samples: a molecular assessment.	Frontiers in Zoology	Zimmermann, J., Hajibabaei, M., Blackburn, D.C., Hanken, J., Cantin, E., Posfai, J.and Evans, T.C.
2016	Characterizing Two Inter-specific Bin Maps for the Exploration of the QTLs/Genes that Confer Three Soybean Evolutionary Traits.	Front Plant Sci.	Wang W, Liu M, Wang Y, Li X, Cheng S, Shu L, Yu Z, Kong J, Zhao T, Gai J.
2014	G-CSF does not influence C2C12 myogenesis despite receptor expression in healthy and dystrophic skeletal muscle	Front Physiol	Wright CR, Brown EL, Della-Gatta PA, Ward AC, Lynch GS, Russell AP	Glycobiology
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2016	Novel Methyltransferase Recognition Motif Identified in Chania multitudinisentens RB-25(T) gen. nov., sp. nov.	Front Microbiol	Ee, R., Lim, Y.L., Yin, W.F., See-Too, W.S., Roberts, R.J. and Chan, K.G.
2017	Balancing herbal medicine and functional food for prevention and treatment of cardiometabolic diseases through modulating gut microbiota	Front Microbiol	Lyu, M., Wang, Y.F., Fan, G.W., Wang, X.Y., Xu, S.Y., Zhu, Y.
2015	Identification of single nucleotide polymorphism markers associated with bacterial cold water disease resistance and spleen size in rainbow trout.	Front Genet.	Liu S, Vallejo RL, Palti Y, Gao G, Marancik DP, Hernandez AG, Wiens GD.
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2018	A mitochondrial manganese superoxide dismutase involved in innate immunity is essential for the survival of Chlamys farreri	Fish Shellfish Immunology	Wang M, Wang B, Jiang K, Liu M, Shi X, Wang L.
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2011	A set of aspartyl protease-deficient strains for improved expression of heterologous proteins in Kluyveromyces lactis.	FEMS Yeast Res.	Ganatra, M.B., Vainauskus, S., Hong, J.M., Taylor, T.E., Denson, J.P., Esposito, D., Read, J.D., Schmeisser, H., Zoon, K.C., Hartley, J.L.and Taron, C.H.
2011	A set of aspartyl protease-deficient strains for improved expression of heterologous proteins in Kluyveromyces lactis	FEMS Yeast Res.	Ganatra, M.B., Rainauskas, S., Hong J.M., Taylor, T.E., Denson, J.P.M., Esposito, D., Read, J.D., Schmeisser, H., Zoon, K.C., Hartley, J.L. and Taron, C.H.
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