FAQ: How do I analyze VarSkip Short SARS-CoV-2 sequencing data?

VarSkip Short SARS-CoV-2 sequencing data can be analyzed using the same analysis methods as ARTIC multiplex amplicon sequencing. All necessary reference files for modifying ARTIC sequencing analysis pipelines for VarSkip Short SARS-CoV-2 sequencing analysis can be found at https://github.com/nebiolabs/VarSkip.