Two methods are available for library preparation of fragmented DNA for the 454™ sequencing platform. The “quick” library preparation method includes repair of DNA ends, and the addition of a non-templated dA-tail, followed by ligation to an adaptor. The original method for fragmented DNA preparation is no longer commonly used. This protocol includes repair of DNA ends, before ligation to an adaptor. Hydrophilic streptavidin magnetic beads are added to library to biotinylate one adaptor per fragment. Upon ligation of the fragment and the unphosphorylated adaptor, a nick in the adaptor sequence is generated. The nicked strand is displaced, the 3’ end of the DNA template is extended, and the adaptor sequence is filled-in to generate full-length dsDNA. This process is coupled with the elution of the full-length, unbiotinylated ssDNA strand. For more information, choose the workflow tabs below.
Libraries prepared by either method are suitable for capture bead immobilization and emulsion PCR, the next steps in the 454 sequencing workflow.
NEBNext® reagents are available for each step in the DNA library preparation workflow for the 454™ platform. Reagents from NEB are available in a set, master mix or module format. Each reagent has been functionally validated by preparation of a genomic DNA library followed by 454 sequencing.
454™ is a trademark of Roche.
NEBNext® is a registered trademark of New England Biolabs, Inc.
FAQs for DNA for 454™
Protocols for DNA for 454™
- Cellular Labeling (S9106)
- Labeling of Proteins in vitro (S9106)
- NEBNext DNA Sample Prep Master Mix Set for 454 End Repair Module Protocol (E6070)
- NEBNext DNA Sample Prep Master Mix Set for 454 Fill-in and ssDNA Isolation Module Protocol (E6070, E6071)
- NEBNext DNA Sample Prep Master Mix Set for 454 Quick Ligation Module Protocol (E6070)
- NEBNext End Repair Module Protocol (E6050)
- NEBNext Quick Ligation Module Protocol (E6056)
"Quick" DNA Library Construction Workflow for 454
DNA Library Construction Workflow for 454
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