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Favorite Tools
Enzyme Finder
NEBcutter
NEBuffer Chart
Double Digest Finder
Isoschizomers
DNA Sequences
and Maps
REBASE
Applications of Polymerases

  Bst
DNA
L.Frag
Taq Vent Vent
(exo-)
Deep
Vent
Deep
Vent
(exo-)
9°Nm Ther-
minator
T7
DNA
E.coli
Poly I
Klenow
Frag
Klenow
exo-
Reverse
Transc-
riptase
T4
DNA.
T7
RNA
SP6
RNA
Labeling in vitro
3' fill-in  (+)  + (+) + (+) + (+)   (+) (+) (+) +   (+)    
3' exchange     +   +       + (+) +     +    
nick-translation   +               +            
replacement synthesis     (+)   (+)       (+) (+) (+)     +    
random priming + + + + + + +       + +        
RNA probes                             + +
Cloning
creating blunt ends
5' overhang fill-in     (+)   (+)   (+)   (+) (+) +     +    
3' overhang removal     +   +   (+)   (+) (+) +     +    
nested deletions                           +    
Sequencing (DNA)
DNA (+) (+)   (+)    (+)   +   (+) + (+) (+)      
RNA                         +      
Mutagenesis
oligonucleotide directed     (+)   (+)       +   (+)     +    
misincorporation   +                 +          
Mapping
transcript                         +      
cDNA
synthesis
1st strand                         +      
2nd strand (+)   (+)   (+)         (+) +          
cloning
Okayama-Berg                         +      
In vitro transcription                             + +

  +  = recommended enzyme for this application
(+) = usable, but not the enzyme of choice