- Abraham, D., Eberhard, M.L., Lange, A.M., Yutanawiboonchai, W., Perler, F.B. and Lok, J.B. (1992) Identification
of surrogate rodent hosts for larval Onchocerca lienalis and induction of protective immunity in a model system.
J Parasitol. 78: 447-453.PubMed
ID:1597787
- Adam, E. and Perler, F.B. (2002). Development of a Positive Genetic Selection System for Inhibition of Protein
Splicing Using Mycobacterial Inteins in Escherichia coli DNA Gyrase Subunit A. J. Mol. Micro. Biotechnol. 4:479-487.PubMed
ID:12432958
- Adams, M.W.W., Perler, F.B. and Kelly, R.M. (1995). Extremozymes: expanding the limits of biocatalysis. Biotechnology
13: 662-668.PubMed
ID:9546220
- Aliotta, J. M., Pelletier, J. J., Ware, J. L., Moran, L. S., Benner, J. S., and Kong, H. (1996). Thermostable
Bst DNA polymerase I lacks a 3' fwdarw 5' proofreading exonuclease activity1. Genetic Analysis Biomolecular Engineering
12:185-195.PubMed
ID:8740835
- Anton, B. P., Heiter, D. F., Benner, J. S., Hess, E. J., Greenough, L., Moran, L. S., Slatko, B. E., and Brooks,
J. E. (1997). Cloning and characterization of the BglII restriction-modification system reveals a possible evolutionary
footprint. Gene 187:19-27.PubMed
ID:9073062
- Arasu, P., and Perler, F. B. (1987). Genomic Cloning of Recombinant Antigens Detected by Antiserum Against Infective
Larvae of Brugia Malayi. Molecular Paradigms for Eradicating Helminthic Parasites, pp. 183-192.
- Arasu, P., Nutman, T. B., Steel, C., Mulligan, M. M., Abraham, D., Tuan, R. S., and Perler, F. B. (1989). Human
T-cell stimulation, molecular characterization and in situ mRNA localization of a Brugia malayi recombinant antigen.
Mol. Biochem. Parasitol. 36:223-231.PubMed
ID:2797061
- Arasu , P., Philipp, M., and Perler, F. (1987). Brugia malayi: recombinant antigens expressed by genomic DNA
clones. Exp. Parasitol. 64:281-291.PubMed
ID:2824231
- Awobuluyi, M., Mania, C. V., and Carlow, C. K. S. (1991). Cross-linking of a monoclonal antibody-antigen complex
enables detection of parasite antigen in immunoblots and in an expression library. Mol. Biochem. Parasitol. 44:149-152.PubMed
ID:1707139
- Bacolla, A., Pradhan, S., Roberts, R.J. and Wells, R.D. (1999). Recombinant Human DNA (Cytosine-5) Methyltransferase.
II. steady-state kinetics reveal allostericactivation by methylated DNA. J. Biol. Chem. 274:33011-33019.PubMed
ID:10551869
- Bacolla, A., Pradhan, S., Larson, J.E., Roberts, R.J. and Wells, R.D. (2001). Recombinant human DNA (cytosine-5)
methyltransferase. III. Allosteric control, reaction order, and influence of plasmid topology and triplet repeat
length on methylation of the fragile X CGGCCG sequence. J. Biol. Chem. 276:18605-18613.PubMed
ID:11359795
- Baldwin, G. S., Kelly, S. M., Price, N. C., Wilson, G. G., Connolly, B. A., Artymiuk, P. J., and Hornby, D. P.
(1994). Ligand-induced conformational states of the cytosine-specific DNA methyltransferase M.HgaI-2. J. Mol. Biol.
235:545-553.PubMed
ID:8289281
- Balendiran, K., Bonventre, J., Knott, R., Jack, W., Benner, J., Schildkraut, I., and Anderson, J. E. (1994).
Expression, purification, and crystallization of restriction endonuclease PvuII with DNA containing its recognition
site. Proteins 19:77-79.PubMed
ID:8066089
- Bandi, C., Slatko, B. and O'Neill, S.L. (1999). Wolbachia genomes and the many faces of symbiosis. Parasitology
Today 15(11):428-429.
- Barany, F., Slatko, B., Danzitz, M., Cowburn, D., Schildkraut, I., and Wilson, G. G. (1992). The corrected nucleotide
sequences of the TaqI restriction and modification enzymes reveal a thirteen-codon overlap. Gene 112:91-95.PubMed
ID:1551592
- Barnwell, J.W., Galinski, M.R., DeSimone, S.G., Perler, F. and Ingravallo, P. (1999). Plasmodium vivax, P. cynomolgi,
and P. knowlesi: Identification of Homologue Proteins Associated with the Surface of Merozoites. Exp. Parasitol.
91:238-249. PubMed
ID:10072326
- Barsomian, J. M., Card, C. O., and Wilson, G. G. (1988). Cloning of the HhaI and HinPI restriction-modification
systems. Gene 74:5-7.PubMed
ID:3074013
- Belfort, M., and Roberts, R. J. (1997). Homing endonucleases: keeping the house in order. Nucl. Acids Res. 25:3379-3388.PubMed
ID:9254693
- Besnier, C.E. and Kong, H. (2001). Converting MlyI endonuclease into a nicking enzyme by changing its oligomerization
state. EMBO Reports 2(9):782-786.PubMed
ID:11520857
- Bestul, K.J., McCall, J. W., Supakorndej, N., Ma, D., Carlow, C. K. S. (1998). Evaluation of the ASSURE/FH Antibody
Assay for the Detection of Feline Heartworm Infection. Proc. Amer. Heartworm Symp. (In press).
- Biery, M.C., Stewart, F.J., Stellwagen, A.E., Raleigh, E.A. and Craig, N.L. (2000). A simple in vitro Tn7-based
transposition system with low target site selectivity for genome and gene analysis. Nucl. Acids Res. 28(5):1067-1077.PubMed
ID:10666445
- Bitinaite, J., Wah, D. A., Aggarwal, A. K., Schildkraut, I. (1998). FokI Dimerization is Required for DNA Cleavage.
Proc. Natl. Acad. Sci. USA 95(18):10570-10575.PubMed
ID:9724744
- Bitinaite, J. and Schildkraut, I. (2002). Self-generated DNA termini relax the specificity of SgrAI restriction
endonuclease. Proc. Natl. Acad. Sci. USA 99(3):1164-1169.PubMed
ID:11818524
- Blaxter, M. L., Raghavan, N., Ghosh, I., Guiliano, D., Lu, W., Williams, S. A., Slatko, B. and Scott, A. L. (1996).
Genes expressed in Brugia malayi infective third stage larvae. Molecular and Biochemical Parasitology 77:77-93.PubMed
ID:8784774
- Blaxter, M., Aslett, M., Guiliano, D., Daub, J. and The Filarial Genome Project (1999). Parasitic helminth genomics.
Exp. Parasitology118:S39-S51.PubMed
ID:10466136
- Bonventre, J., Walsh, P. and Robinson, D., Molecular Biology Problem Solver: A Laboratory Guide, (A.S. Gerstein,
Ed.), Chapter 9, J. Wiley Publishers, 2001.
- Bradley, J. E., Trenholme, K. R., Gillespie, A. J., Guderian, R., Titanji, V., Hong, Y., and McReynolds, L. (1993).
A sensitive serodiagnostic test for onchocerciasis using a cocktail of recombinant antigens. Am J Trop Med Hyg.
48:198-204.PubMed
ID:8447523
- Brooks, J. E. (1987). Properties and uses of restriction endonucleases. Methods Enzymol. 152:113-129.PubMed
ID:2821353
- Brooks, J. E., Benner, J. S., Heiter, D. F., Silber, K. R., Sznyter, L. A., Jager-Quinton, T., Moran, L. S.,
Slatko, B. E., Wilson, G. G., and Nwankwo, D. O. (1989). Cloning the BamHI restriction modification system. Nucl.
Acids Res. 17:979-997.PubMed
ID:2537955
- Brooks, J. E., Nathan, P. D., Landry, D., Sznyter, L. A., Waite-Rees, P., Ives, C. L., Moran, L. S., Slatko,
B. E., and Benner, J. S. (1991). Characterization of the cloned BamHI restriction modification system: its nucleotide
sequence, properties of the methylase, and expression in heterologous hosts. Nucl. Acids Res. 19:841-850.PubMed
ID:1901989
- Cantor, E.J. and Chong, S. (2001). Intein-mediated rapid purification of cre recombinase. Protein Expr. Purif.
22(1):135-140.PubMed
ID:11388811
- Card, C. O., Williams, S. A., Moran, L. S., Poole, C. B., and Slatko, B. E. (1987). The Use of DNA Sequencing
Reactions as Probes for Southern Blots, Dot Blots and Colony Hydridizations. BioTechniques 5:302-307.
- Card, C. O., Wilson, G. G., Weule, K., Hasapes, J., Kiss, A., and Roberts, R. J. (1990). Cloning and characterization
of the HpaII methylase gene. Nucl. Acids Res. 18:1377-1383.PubMed
ID:2183189
- Carlow, C. K. S., Edwards, M. K., James, E. R., and Philipp, M. (1987). Monoclonal antibodies to parasite antigens:
a rapid immunization protocol requiring small numbers of parasites. J. Parasitol. 73:1054-1057.PubMed
ID:3309239
- Carlow, C. K. S., Franke, E. D., Lowrie, R. C. J., Partono, F., and Philipp, M. (1987). Monoclonal antibody to
a unique surface epitope of the human filaria Brugia malayi identifies infective larvae in mosquito vectors. Proc.
Natl. Acad. Sci. USA 84:6914-6918.PubMed
ID:2443912
- Carlow, C. K. S., Perrone, J., Spielman, A., and Philipp, M. A. (1987). A Developmentally regulated surface epitope
expressed by the infective larva of Brugia malayi which is rapidly lost after infection. Alan R. Liss, Inc., Molecular
Paradigms for Eradicating Helmenthic Parasites,, 301-310.
- Carlow, C. K. S., and Philipp, M. (1987). Protective immunity to Brugia malayi larvae in BALB/c mice: potential
of this model for the identification of protective antigens. Am. J . Trop. Med. Hyg. 37:597-604.PubMed
ID:3688312
- Carlow, C. K. S., Busto, P., Storey, N., and Philipp, M. (1990). Anti-idiotypic antibodies function as a surrogate
surface epitope of Brugia malayi infective larvae. Acta Trop., 47:391-397.PubMed
ID:1700584
- Carlow, C. K. S., Suwita, A., Bahang, Z., Purnomo, Partono, F., and Philipp, M. (1990). Field testing of monoclonal
probe specific for infective larvae of human Brugian parasites. Wiley-Liss, Inc. Parasites: Molecular Biology,
Drug and Vaccine Design. 479-488.
- Carroll, R.S., Zhang, J., Bello, L., Melnick, M.B., Maruyama, T. and Black, P.M. (1999). KDR Activation in Astrocytic
Neoplasms. Cancer 86(7):1335-1341.
- Caserta, M., Zacharias, W., Nwankwo, D., Wilson, G. G., and Wells, R. D. (1987). Cloning, sequencing, in vivo
promoter mapping, and expression in Escherichia coli of the gene for the HhaI methyltransferase. J. Biol. Chem.
262:4770-4777.PubMed
ID:3549710
- Chandrasegaran, S., Lunnen, K. D., Smith, H. O., and Wilson, G. G. (1988). Cloning and sequencing the HinfI restriction
and modification genes. Gene 70:387-392.PubMed
ID:3063606
- Chen Z. and Kong, H. (1988). Isolation and characterization of restriction endonuclease BstYI from Bacillus stearothermophilus.
FEBS Lett. 234:169-171.PubMed
ID:2839359
- Chen Z., Kong, H. and Wang, L. (1989). Isolation and characterization of restriction endonuclease BstFI and BstSI
from Bacillus stearothermophilus. J. Fudan Univ. Natural Sci. 28:363-366.
- Chen, L., Benner, J. and Perler, F. (2000). Protein Splicing in the Absence of an Intein Penultimate Histidine.
J. Biol. Chem. 275(27):20431-20435.PubMed
ID:10770923
- Chen, L., Pradhan, S. and Evans, T.C. Jr. (2001). Herbicide resistance from a divided EPSPS protein: the split
Synechocystis DnaE intein as an in vivo affinity domain. Gene 263(1-2):39-48.PubMed
ID:11223241
- Chen, X., Xu, M.-Q., Ding, Y., Ferrandon, S. and Rao, Z. (2002). Purification and initial crystallization studies
of a DnaB intein from Synechocystis sp. PCC 6803. Acta Crystallogr. D. Biol. Crystallogr. 58(Pt 7):1201-1203.PubMed
ID:12077443
- Chen, X., Xu, M.-Q., Ding, Y., Ferrandon, S. and Rao, Z. (2002A). Crystallographic study of a naturally occurring
trans-splicing intein from Synechocystis sp. PCC 6803. Acta Crystallogr. D. Biol. Crystallogr. 58(Pt 7):1204-1206.PubMed
ID:12077444
- Cheng, X., Kumar, S., Posfai, J., Pflugrath, J. W., and Roberts, R. J. (1993). Crystal structure of the HhaI
DNA methyltransferase complexed with S-adenosyl-L-methionine. Cell 74:299-307.PubMed
ID:8343957
- Cheng, X., Kumar, S., Klimasauskas, S., and Roberts, R. J. (1993). Crystal Structure of the HhaI DNA Methyltransferase.
Cold Spring Harbor Laboratory Press, 331-338.PubMed
ID:7956046
- Cheng, X., Balendiran, K., Schildkraut, I., and Anderson, J. E. (1994). Structure of PvuII endonuclease with
cognate DNA. EMBO J. 13:3927-3935.PubMed
ID:8076590
- Cheng, X., Balendiran, K., Schildkraut, I., and Anderson, J. E. (1995). Crystal structure of the PvuII restriction
endonuclease. Gene 157:139-140.PubMed
ID:7607478
- Cheng, X. and Roberts, R.J. (2001). AdoMet-dependent methylation, DNA methyltransferases and base flipping. Nucl.
Acids Res. 29:3784-3795.PubMed
ID:11557810
- Chin, H.G., Kim, G.D., Marin, I., Mersha, F., Evans, T.C. Jr., Chen, L., Xu, M.-Q. and Pradhan, S. (2003). Protein
trans-splicing in transgenic plant chloroplast: Reconstruction of herbicide resistance from split genes. Proc.
Natl. Acad. Sci. USA 100(8):4510-4515.PubMed
ID:12671070
- Chong, S., Shao, Y., Paulus, H., Benner, J., Perler, F. B., and Xu, M. Q. (1996). Protein splicing involving
the Saccharomyces cerevisiae VMA intein. The steps in the splicing pathway, side reactions leading to protein cleavage,
and establishment of an in vitro splicing system. J. Biol. Chem. 271:22159-22168.PubMed
ID:8703028
- Chong, S., and Xu, M. Q. (1997). Protein Splicing of the Saccharomyces cerevisiae VMA Intein without the Endonuclease
Motifs*. J Biol. Chem. 272:15587-15590.PubMed
ID:9188443
- Chong, S., Mersha, F. B., Comb, D. G., Scott, M. E., Landry, D., Vence, L. M., Perler, F. B., Benner, J., Kucera,
R. B., Hirvonen, C. A., Pelletier, J. J., Paulus, H., and Xu, M. Q. (1997). Single-column purification of free
recombinant proteins using a self-cleavable affinity tag derived from a protein splicing element. Gene 192:271-281.PubMed
ID:9224900
- Chong, S., Williams, K.S., Wotkowicz, C. and Xu, M.Q. (1998). Modulation of protein splicing of the saccharomyces
cerevisiae vacuolar membrane ATPase intein. J. Biol. Chem. 273:10567-77.PubMed
ID:9553117
- Chong, S., Montello, G.E., Zhang, A., Cantor, E.J., Liao, W., Xu, M.-Q. and Benner, J. (Nov. 1998). Utilizing
the C-terminal cleavage activity of a protein splicing element to purify recombinant proteins in a single chromatographic
step. Nucl. Acids Res. 26(22):5109-5115.PubMed
ID:9801307
- Chong, S. and Perler, F.B. (Mar 2003). Intein-mediated Protein Purification, IN Methods and Tools in Biosciences
and Medicine (M. Blot, Ed.) pages 173-193.
- Christ, C., and Nelson, M. (1984). DNA modification methylases: New uses in the manipulation of DNA. BioTechniques
2:218-221.
- Colina, K. F., Perler, F. B., Matsumura, I., Meda, M., and Nutman, T. B. (1990). The identification of an Onchocerca-specific
recombinant antigen containing a T cell epitope. J Immunol. 145:1551-1556.PubMed
ID:1696601
- Conway, G., Margoliath, A., Wong-Madden, S., Roberts, R. J., and Gilbert, W. (1997). Jak1 kinase is required
for cell migrations and anterior specification in zebrafish embryos. Proc. Natl. Acad. Sci. USA 94:3082-3087.PubMed
ID:9096349
- Cook, S. N., Jack, W. E., Xiong, X., Danley, L. E., Ellman, J. A., Shultz, P. G., and Noren, C. J. (1995). Photochemically
initiated protein splicing. Angew. Chem. Int. Ed. Engl. 34:1629-1630.
- Creasey, A., D'Angio, L., Dunne, T.S., Kissinger, C., O'Keefe, T., Perry-O'Keefe, H., Moran, L.S., Roskey, M.,
Schildkraut, I. and Sears, L.E. (1991). Application of a novel chemiluminescence-based DNA detection method to
single-vector and multiplex DNA sequencing. Biotechniques 11:102-109.PubMed
ID:1954008
- Crossgrove, K., Laudet, V. and Maina, C.V. (2002). Dirofilaria immitis encodes Di-nhr-7, a putative orthologue
of the Drosophila ecdysone-regulated E78 gene. Molecular & Biochemical Parasitology 119:169-177.
- Cui, T., Liao, P.H., Guan, C. and Guo, H.C. (1999). Purification and crystallization of precursors and autoprocessed
enzymes of Flavobacterium glycosylasparaginase: an N-terminal nucleophile hydrolase. Acta Cryst. D Biol. Cryst.
55(11):1961-1964.PubMed
ID:10531509
- Dila, D., and Raleigh, E. A. (1988). Genetic dissection of the methylcytosine-specific restriction system mcrB
of Escherichia coli K-12. Gene 74:23-24.PubMed
ID:2854808
- Dila, D., Sutherland, E., Moran, L., Slatko, B., and Raleigh, E. A. (1990). Genetic and sequence organization
of the mcrBC locus of Escherichia coli K-12. J. Bacteriol. 172:4888-4900.PubMed
ID:2203735
- Ding, Y., Xu, M.-Q., Ghosh, I., Chen, X., Ferrandon, S., Lesage, G., Rao, Z. (2003). Crystal structure of a mini-intein
reveals a conserved catalytic module involved in side chain cyclization of asparagine during protein splicing.
J. Biol. Chem. 278(40):39133-39142.PubMed
ID:12878593
- Dissanayake, S., Perler, F. B., Xu, M., Southworth, M. W., Yee, C. K., Wang, S., Dreyer, G., Watawana, L., Kurniawan,
L., Fuhrman, J. A., and Piessens, W. F. (1995). Differential recognition of microfilarial chitinase, a transmission-blocking
vaccine candidate antigen, by sera from patients with Brigian and Bancroftian filariasis. Am. J. Trop. Med. Hyg.
53:289-294.PubMed
ID:7573715
- Dorner, L. F., and Schildkraut, I. (1994). Direct selection of binding proficient/catalytic deficient variants
of BamHI endonuclease. Nucl. Acids. Res. 22:1068-1074.PubMed
ID:7908739
- Dorner, L. F., Bitinaite, J., Whitaker, R. D.and Schildkraut, I. (1999). Genetic Analysis of the Base-specific
Contacts of BamHI Restriction Endonuclease. J. Mol. Biol. 285:1515-1523.PubMed
ID:9917393
- Eberl, D. F., Lorenz, L. J., Melnick, M. B., Sood, V., Lasko, P., and Perrimon, N. (1997). A New Enhancer of
Position-Effect Variegation in Drosophila melanogaster Encodes a Putative RNA Helicase That Binds Chromosomes and
Is Regulated by the Cell Cycle. Genetics Society of America 146:951-963.PubMed
ID:9215899
- Edgar, M. A., Pasinelli, P., DeWit, M., Anton, B., Dokas, L. A., Pastorino, L., DiLuca, M., Cattabeni, F., Gispen,
W. H. and DeGraan, P. N. (1997). Phosphorylation Of The Casein Kinase II Domain Of B-50 (GAP-43) In Rat Cortical
Growth Cones. J. Neurochem. (US) 69(5):2206-2215.PubMed
ID:9349568
- Edwards, M. K., Busto, P., James, E. R., Carlow, C. K. S., and Philipp, M. (1990). Antigenic and dynamic properties
of the surface of Onchocerca microfilariae. Trop. Med. Parasitol. 41:174-180.PubMed
ID:2200104
- Ehrlich, M., Wilson, G. G., Kenneth, C. K., and Gehrke, C. W. (1987). N4-Methylcytosine as a minor base in bacterial
DNA. J. Bacteriol. 169:939-943.PubMed
ID:3029036
- Ellis, P.J., Carlow, C.K.S., Ma, D. and Kuhn, P. (1998). Crystal Structure of the Complex of Brugia Malayi Cyclophilin
and Cyclosporin A. Protein Sci. 7:1310-1316.
- Ellis, P.J., Carlow, C.K.S., Ma, D. and Kuhn, P. (2000). Crystal Structure of the Complex of Brugia Malayi Cyclophilin
and Cyclosporin A. Biochemistry 39(3):592-598.PubMed
ID:10642184
- Engler, L.E., Sapienza, P., Dorner, L.F., Kucera, R., Schildkraut, I. and Jen-Jacobson, L. (2001). The Energetics
of the Interaction of BamHI Endonuclease with its Recognition Site GGATCC. J. Mol. Biol. 307:619-636.PubMed
ID:11254386
- Evans, P. D., Cook, S. N., Riggs, P. D., and Noren, C. J. (1995). LITMUS: Multipurpose cloning vectors with a
novel system for bidirectional in vitro transcription. Biotechniques 19:130-135.PubMed
ID:7669286
- Evans, T.C., Benner, J. and Xu, M-Q (1998). Semisynthesis of cytotoxic proteins using a modified protein splicing
element. Protein Sci. 7(11):2256-2264.PubMed
ID:9827992
- Evans, T.C., Benner, J. and Xu, M-Q (1999). The in Vitro Ligation of Bacterially Expressed Proteins Using an
Intein from Methanobacterium thermoautotrophicum. J. Biol. Chem. 274(7):3923-3926.PubMed
ID:9933578
- Evans, T.C., Benner, J. and Xu, M-Q (1999A). The Cyclization and Polymerization of Bacterially Expressed Proteins
Using Modified Self-splicing Inteins. J. Biol. Chem. 274(26):18359-18363.PubMed
ID:10373440
- Evans, T.C. and Xu, M-Q (1999B). Intein-Mediated Protein Ligation: Harnessing Nature's Escape Artists. Biopolymers
51:333-342.PubMed
ID:10685044
- Evans, T.C., Martin, D., Kolly, R., Panne, D., Sun, L., Ghosh, I., Chen, L., Benner, J., Liu, X-Q and Xu, M-Q
(2000). Protein trans-Splicing and Cyclization by a Naturally Split Intein from the dnaE Gene of Synechocystis
Species PCC6803. J. Biol. Chem. 275(13):9091-9094.PubMed
ID:10734038
- Evans, T.C., Jr. and Xu, M-Q (2002). Mechanistic and kinetic considerations of protein splicing. Chem. Rev. 102(12):4869-4884.PubMed
ID:12475209
- Ferrandon, S., Sterzenbach, T., Mersha, F.B. and Xu, M-Q (2003). A single surface tryptophan in the chitin-binding
domain from Bacillus circulans chitinase A1 plays a pivotal role in binding chitin and can be modified to create
an elutable affinity tag. Biochim. Biophys. Acta. 1621:31-40.PubMed
ID:12667608
- Ferrer, M., Godbout, K., Sullivan, B., Austen, D., Sanderson, C., Kelley, K., Osburne, M., Harrison, S. and van
Schravendijk, M. R. (1997). Construction and characterization of a radio-iodinatable mutant of recombinant human
CD4. J. Immunol. Methods 210:215-225. PubMed
ID:9520304
- The Filarial Genome Project (1999). Deep within the Filarial Genome: Progress of the Filarial Genome Project.
Parasitology Today 15(6):219-224.
- Fischer, P., Bonow, I., Buttner, D.W., Kamal, I.H. and Liebau, E. (2003). An aspartate aminotransferase of Wolbachia
endobacteria from Onchocerca volvulus is recognized by IgG1 antibodies from residents of endemic areas. Parasitology
Research 90:38-47.PubMed
ID:12743802
- Fomenkov, A., Xiao, J. P., Dila, D., Raleigh, E., and Xu, S. Y. (1994). The 'endo-blue method' for direct cloning
of restriction endonuclease genes in E. coli. Nucl. Acids Res. 22:2399-2403.PubMed
ID:8036170
- Fomenkov, A., Xiao, J. P., and Xu, S. Y. (1995). Nucleotide sequence of a small plasmid isolated from Acetobacter
pasteurianus. Gene 158:143-144.PubMed
ID:7789800
- Fomenkov, A., and Xu, S.Y. (1995B). Isolation of temperature-sensitive mutants of the BamHI restriction endonuclease.
Gene 157:303-310.PubMed
ID:7607513
- Fomenkov, A., and Xu, S. Y. (1995C). Cloning of a gene from Thermus filiformis and characterization of the thermostable
nuclease. Gene 163:109-113.PubMed
ID:7557458
- Foster, J.M., Christodoulou, Z., Cowan, G.M. and Newbold, C.I. (1999). Thermal Asymmetric Interlaced PCR Amplification
of YAC Insert End Fragments for Chromosome Walking in Plasmodium falciparum and Other A/T-Rich Genomes. BioTechniques
27(2):240-248.PubMed
ID:10457822
- Foster, J.M., Kamal, I.H., Daub, J., Swan, M.C., Ingram, J.R., Ganatra, M., Ware, J., Guiliano, D., Aboobaker,
A., Moran, L., Blaxter, M. and Slatko, B.E. (2001). Hybridization of High-Denisty Filter Arrays of a Brugia malayi
BAC Library with Biotinylated Oligonucleotides and PCR Products. BioTechniques 30(6):1216-1222.PubMed
ID:11414208
- Foster, J.M. and Johnston, D.A. (2002). Helminth genomics: from gene discovery to genome sequencing. Trends Parasitol
18(6):241-242.
- Fuhrman, J. A., Lane, W. S., Smith, R. F., Piessens, W. F., and Perler, F. B. (1992). Transmission-blocking antibodies
recognize microfilarial chitinase in brugian lymphatic filariasis. Proc Natl Acad Sci USA 89:1548-1552.PubMed
ID:1542646
- Galburt, E.A., Pelletier, J., Wilson, G. and Stoddard, B.L. (2002). Structure of a tRNA Repair Enzyme and Molecular
Biology Workhorse: T4 Polynucleotide Kinase. Structure 10(9):1249-1260.
- Gardner, A.F. and Jack, W.E. (1999). Determinants of nucleotide sugar recognition in an archaeon DNA polymerase.
Nuc. Acids Res. 27(12):2545-2553.PubMed
ID:10352184
- Gardner, A.F. and Jack, W.E. (2002). Acyclic and dideoxy teminator preferences denote divergent sugar recognition
by archaeon and Taq DNA polymerases. Nuc. Acids Res. 30(2):605-613.PubMed
ID:11788725
- Garraud, O., Nkenfou, C., Bradley, J. E., Perler, F. B., and Nutman, T. B. (1995). Identification of recombinant
filarial proteins capable of inducing polyclonal and antigen-specific IgE and IgG4 antibodies. J. Immunol. 155:1316-1325.PubMed
ID:7543519
- Garraud, O., Perler, F. B., Bradley, J. E., and Nutman, T. B. (1997). Induction of Parasite Antigen-Specific
Antibody Responses in Unsensitized Human B Cells is Dependent on the Presence of Cytokines After T Cell Priming.
J. Immunol. 159:4793-4798.PubMed
ID:9366403
- Gbakima, A. A., Nutman, T. B., Bradley, J. E., McReynolds, L. A., Winget, M. D., Hong, Y., and Scott, A. L. (1996).
Immunoglobulin G Subclass Responses of Children during Infection with Onchocerca volvulus. Clinical and Diagnostic
Laboratory Immunology 3:98-104.PubMed
ID:8770512
- Ghosh, I., Sun, L. and Xu, M.Q. (2001). Zinc Inhibition of Protein trans-Splicing and Identification of Regions
Essential for Splicing and Association of a Split Intein. J. Biol. Chem. 276(26):24051-24058.PubMed
ID:11331276
- Gingeras, T. R., Greenough, L., Schildkraut, I., and Roberts, R. J. (1981). Two new restriction endonucleases
from Proteus vulgaris. Nucl. Acids Res. 9:4525-4536.PubMed
ID:6272209
- Gingras, A-C., Gygi, S.P., Raught, B., Polakiewicz, R.D., Abraham, R.T., Hoekstra, M.F., Aebersold, R. and Sonenberg,
N. (1999). Regulation of 4E-BP1 phosphorylation: a novel two-step mechanism. Genes & Devel. 13:1422-1437.PubMed
ID:10364159
- Giriat, I., Muir, T.W. and Perler, F.B. (2001). Protein splicing and its aplications. Genet. Eng. (NY) 23:171-199.PubMed
ID:11570103
- Grandea, A. G. I., Le, T. K. T., Asikin, N., Davis, T. B., Philipp, M., Cohen, C., and McReynolds, L. A. (1989).
A l gt11 cDNA recombinant that encodes Dirofilaria immitis paramyosin. Mol. Biochem. Parasitol. 35:31-41.PubMed
ID:2527335
- Grogan, D.W. (2003). Cytosine methylation by the SuaI restriction-modification system: implications for genetic
fidelity in a hyperthermophilic archaeon. J. Bacteriol. 185(15):4657-4661.PubMed
ID:12867480
- Guan, C., Wanner, B., and Inouye, H. (1983). Analysis of Regulation of phoB Expression Using a phoB-cat Fusion.
J. Bacteriol. 156:710-717.PubMed
ID:6313614
- Guan, C. D., Li, P., Riggs, P. D., and Inouye, H. (1988). Vectors that facilitate the expression and purification
of foreign peptides in Escherichia coli by fusion to maltose-binding protein. Gene 67:21-30.PubMed
ID:2843437
- Guan, C., Cui, T., Rao, V., Liao, W., Benner, J., Lin, C. L., and Comb, D. (1996). Activation of glycosylasparaginase.
Formation of Active N-Terminal Threonine by Intramolecular Autoproteolysis. J. Biol. Chem. 271:1732-1737.PubMed
ID:8576176
- Guan, C., Liu, Y., Shao, Y., Cui, T., Liao, W., Ewel, A., Whitaker, R. and Paulus, H. (1998). Characterization
and functional analysis of the cis-autoproteolysis active center of glycosylasparaginase. J. Biol. Chem. 273:9695-702.PubMed
ID:9545304
- Guiliano, D., Ganatra, M., Ware, J., Parrot, J., Daub, J., Moran, L., Brennecke, H., Foster, J.M., Supali, T.,
Blaxter, M., Scott, A.L., Williams, S.A. and Slatko, B.E. (1999). Chemiluminescent Detection of Sequential DNA
Hybridizations to High-Density, Filter-Arrayed cDNA Libraries: A Subtraction Method for Novel Gene Discovery. BioTechniques
27(1):146-152PubMed
ID:10407677
- Guo, H.-C., Xu, Q., Buckley, D. and Guan, C. (1998). Crystal Structures of Flavobacterium Glycosylasparaginase.
J. Biol. Chem., 273:20205-20212.PubMed
ID:9685368
- Guthrie, E. P., Quinton-Jager, T., Moran, L. S., Slatko, B. E., Kucera, R. B., Benner, J. S., Wilson, G. G.,
and Brooks, J. E. (1996). Cloning, expression and sequence analysis of the SphI restriction-modification system.
Gene 180:107-112.PubMed
ID:8973353
- Hall, M.F., Noren, C., Perler, F. and Schildkraut, I. (Oct 2002). Creation of an Artificial Bifunctional Intein
by Grafting a Homing Endonuclease into a Mini-intein. J. Mol. Biol. 323(2):173-179.PubMed
ID:12381313
- Herman, J., Nelkin, B., Mabry, M., Wilson, G., and Baylin, S. (1989). Introduction of prokaryotic HhaI DNA methyltransferase
alters the phenotype of 3T3 cells. Proc. Am. Assoc. Cancer Res. 30:428.
- Higgins, L.S., Besnier, C. and Kong H. (2001). The nicking endonuclease N.BstNBI is closely related to Type IIs
restriction endonucleases MlyI and PleI. Nucl. Acids Res. 20:2492-2501.PubMed
ID:11410656
- Hingorani, K. and Bitinaite, J. (2003). Kinetic analysis of the coordinated interaction of SgrAI restriction
endonuclease with different DNA targets. J. Biol. Chem. 278:40392-40399.PubMed
ID:12851384
- Hirsch, J. A., Wah, D. A., Dorner, L. F., Schildkraut, I., Aggarwal, A. K. (1997). Crystallization and Preliminary
X-ray Analysis of Restriction Endonuclease FokI Bound to DNA. FEBS Lett. 403(2):136-138.PubMed
ID:9042953
- Hlavaty, J.J., Benner, J.S., Hornstra, L.J. and Schildkraut, I. (2000). Identification of the Metal-Binding Sites
of Restriction Endonucleases by Fe2+-Mediated Oxidative Cleavage. Biochemistry 39(11):3097-3105.PubMed
ID:10715131
- Hodges, R. A., Perler, F. B., Noren, C. J., and Jack, W. E. (1992). Protein splicing removes intervening sequences
in an archaea DNA polymerase. Nucl. Acids Res. 20:6153-6157.PubMed
ID:1475179
- Hong, X. Q., Mejia, J. S., Nkenfou, C., Perler, F. B., and Carlow, C. K. (1995). A Promising Recombinant Antigen
for the Early Detection of Heartworm Infection. Proceeding of the Heartworm Symposium, 141-146.
- Hong, X. Q., Mejia, J. S., Kumar, S., Perler, F. B., and Carlow, C. K. S. (1996). Cloning and Expression of DiT33
from Dirofilaria-Immitis - a Specific and Early Marker of Heartworm Infection. Parasitology 112:331-338.PubMed
ID:8728997
- Hong, X., Ma, D. and Carlow, C. K. S. (1998). Cloning, expression and characterization of a new filarial cyclophilin.
Mol Biochem Parasitol. 91:353-8.PubMed
ID:9566526
- Hong, X., Ma, D., Page, A.P., Kumar, S. and Carlow, C. K. S. (1998). A highly conserved large molecular weight
cyclophilin of filarial parasites. Exp Parasitol. 88:246-51.PubMed
ID:9562430
- Horton, J.R., Nastri, H.G., Riggs, P.D. and Cheng, X. (1998). Asp34 of PvuII Endonuclease is Directly Involved
in DNA Minor Groove Recognition and Indirectly Involved in Catalysis. J. Mol. Biol. 284:1491-1504.PubMed
ID:9878366
- Horton, N.C, Dorner, L.F., Schildkraut, I. and Perona J.J. (1999). Crystallization and preliminary diffractin
analysis of the HincII restriction endonuclease-DNA complex. Acta Cryst. Biol. Cryst. 55(11):1943-1945.PubMed
ID:10531503
- Hough, D. M., Awobuluyi, M. E., McReynolds, L. A., Carlow, C. K. S., and Maina, C. V. (1992). Using Molecular
Biological Techniques to Identify and Study Gene Products Involved in Dirofilarial Immunoprophylaxis. American
Heartworm Society, 139-142.
- Howard, K. A., Card, C., Benner, J. S., Callahan, H. L., Maunus, R., Silber, K., Wilson, G., and Brooks, J. E.
(1986). Cloning the DdeI restriction-modification system using a two-step method. Nucl. Acids Res. 14:7939-7951.PubMed
ID:3022241
- Hsieh, P.-C., Xiao, J.-P., O'Loane, D. and Xu, S.-Y. (2000). Cloning, Expression and Purification of a Thermostable
Nonhomodimeric Restriction Enzyme, BslI. J. Bacteriol. 182(4):949-955.PubMed
ID:10648519
- Ives, C. L., Nathan, P. D., and Brooks, J. E. (1992). Regulation of the BamHI restriction-modification system
by a small intergenic open reading frame, bamHIC, in both Escherichia coli and Bacillus subtilis. J. Bacteriol.
174:7194-7201.PubMed
ID:1429443
- Ives, C. L., Sohail, A., and Brooks, J. E. (1995). The regulatory C proteins from different restriction-modification
systems can cross-complement. J. Bacteriol. 177:6313-6315.PubMed
ID:7592403
- Jack, W. E., Greenough, L., Dorner, L. F., Xu, S. Y., Strzelecka, T., Aggarwal, A. K., and Schildkraut, I. (1991).
Overexpression, purification and crystallization of BamHI endonuclease. Nucl. Acids Res. 19:1825-1829.PubMed
ID:2030964
- James, E. R., McLean, D. C. J., and Perler, F. B. (1994). Molecular Cloning of an Onchocerca volvulus Extracellular
Cu-Zn Superoxide Dismutase. Infect. Immun. 62:713-716.PubMed
ID:8300230
- Jin, J., Poole, C.B., Slatko, B.E. and McReynolds, L.A. (1999). Alternative splicing creates sex-specific transcripts
and truncated forms of the furin protease in the parasite Dirofilaria immitis. Gene 237(1):161-175.PubMed
ID:10524247
- Johnston, D.A., Blaxter, M.L., Degrave, W.M., Foster, J., Ivens, A.C. and Melville, S.E. (1999). Genomics and
the biology of parasites. BioEssays 21:131-147.
- Joshua, G. W., Perler, F. B., and Wang, C. C. (1995). Orphon spliced-leader sequences form part of a repetitive
element in Angiostrongylus cantonensis. Nucl. Acids Res. 23:1030-1035.PubMed
ID:7731790
- Kelleher, J. E., and Raleigh, E. A. (1991). A Novel Activity in Escherichia coli K-12 That Directs Restriction
of DNA Modified at CG Dinucleotides. J. Bacteriol. 173:5220-5223.PubMed
ID:1830580
- Kelleher, J. E., and Raleigh, E. A. (1994). Response to UV Damage by Four Escherichia coli K-12 Restriction Systems.
J. Bacteriol. 176:5888-5896.PubMed
ID:7928948
- Kelleher, J. E., and Raleigh, E. A. (1995). On the regulation and diversity of restriction in Esherichia coli.
Gene 157:229-230.PubMed
ID:7607495
- Kelley, K.C., Huestis, K.J., Austen, D.A., Sanderson, C.T., Donoghue, M.A., Stickel, S. ., Kawasaki, E.S., and
Osburne, M.S. (1995). Regulation of sCD4-183 gene expression from phage-T7-based vectors in Escherichia coli. Gene
156:33-36.PubMed
ID:7737513
- Kelley, K., Verma, I. and Pierce, G.F. (2002). Gene therapy: reality or myth for the global bleeding disorders
community?. Haemophilia 8(3):261-267.PubMed
ID:12010421
- Kim, G.D., Ni, J., Kelesoglu, N., Roberts, R.J. and Pradhan, S. (2002). Co-operation and communication between
the human maintenance and de novo DNA (cytosine-5) methyltransferases. EMBO J. 21(15):4183-4195.PubMed
ID:12145218
- Klimasauskas, S., Kumar, S., Roberts, R. J., and Cheng, X. (1994). Hhal Methyltransferase Flips its Target Base
Out of the DNA Helix. Cell 76:357-369.PubMed
ID:8293469
- Klimasauskas, S. and Roberts, R. J. (1995). M.Hhal binds tightly to substrates containing mismatches at the target
base. Nucl. Acids Res. 23:1388-1395.PubMed
ID:7753630
- Klimasauskas, S., and Roberts, R. J. (1995). Disruption of the target G-C base-pair by the HhaI methyltransferase.
Gene 157:163-164.PubMed
ID:7607483
- Kong, H and Chen, Z. (1987). Isolation and Identification of restriction endonuclease BstFI. Nucl. Acids Res.
15(17):7205.PubMed
ID:2821503
- Kong, H., Morgan, R. D., and Chen, Z. (1990). A new type II restriction endonuclease, BsmAI, from Bacillus stearothermophilus.
Nucl. Acids Res. 18:686.PubMed
ID:2308865
- Kong, H., Morgan, R. D., and Chen, Z. (1990). Identification of a new type II restriction endonuclease BsaAI.
Nucl. Acids Res. 18:2832.PubMed
ID:2339077
- Kong, H., Morgan, R. D., Maunus, R. E., and Schildkraut, I. (1993). A unique restriction endonuclease, BcgI,
from Bacillus coagulans. Nucl. Acids Res. 21:987-991.PubMed
ID:8451198
- Kong, H., Kucera, R. B., and Jack, W. E. (1993). Characterization of DNA Polymerase from the Hyperthermophile
Archaea Thermococcus litoralis. J. Biol. Chem. 268:1965-1975.PubMed
ID:8420970
- Kong, H., Roemer, S. E., Waite-Rees, P. A., Benner, J. S., Wilson, G. G., and Nwankwo, D. O. (1994). Characterization
of BcgI, a new kind of restriction-modification system. J. Biol. Chem. 269:683-690.PubMed
ID:8276869
- Kong, H., and Smith, C. L. (1997). Substrate DNA and cofactor regulate the activities of a multi-functional restriction-modification
enzyme, Bcgl. Nucl. Acids Res. 25:3687-3692.PubMed
ID:9278491
- Kong, H., and Smith, C. L. (1998a). Does Bcg1, a Unique Restriction Endonuclease, Require Two Recognition Sites
for Cleavage? J Biol. Chem 379:605-609.
- Kong, H (1998b). Analyzing the Functional Organization of a Novel Restriction Modification System, the BcgI System.
J. Mol. Biol. 279:823-832.PubMed
ID:9642063
- Kong, H., Lin, L.F., Porter, N., Stickel, S. Byrd, D., Posfai, J. and Roberts R.J. (2000). Functional analysis
of putative restriction-modification system genes in the Helicobacter pylori J99 genome. Nucl. Acids Res. 28(17):3216-3223.PubMed
ID:10954588
- Kozlova, T., Pokholkova, G.V., Tzertzinis, G., Sutherland, J.D., Zhimulev, I.F. and Kafatos, F.C. (1998). Drosophila
Hormone Receptor 38 Functions in Metamorphosis: A Role in Adult Cuticle Formation. Genetics 149:1465-1475.PubMed
ID:9649534
- Kuhn, P., Guan, C., Cui, T., Tarentino, A. L., Plummer, T. H. J., and Van Roey, P. (1995). Active site and oligosaccharide
recognition residues of peptide-N4-(N-acetyl-beta-D-glucosaminyl)asparagine amidase F. J. Biol. Chem. 270:29493-29497.PubMed
ID:7493989
- Kulakauskas, S., Barsomian, J. M., Lubys, A., Roberts, R. J., and Wilson, G. G. (1994). Organization and sequence
of the HpaII restriction-modification system and adjacent genes. Gene 142:9-15.PubMed
ID:7514149
- Kumar, S., Cheng, X., Klimasauskas, S., Sha, M., Posfai, J., Roberts, R. J., and Wilson, G. G. (1994). The DNA
(cytosine-5) methyltransferases. Nucl. Acids Res. 22:1-10.PubMed
ID:8127644
- Kumar, S., Horton, J. R., Jones, G. D., Walker, R. T., Roberts, R. J., and Cheng, X. (1997). DNA containing 4'-thio-2'
deoxycytidine inhibits methylation by HhaI methyltransferase. Nucl. Acids Res. 25:2773-2783.PubMed
ID:9207024
- Labahn, J., Granzin, J., Schluckebier, G., Robinson, D. P., Jack, W. E., Schildkraut, I., and Saenger, W. (1994).
Three-dimensional structure of the adenine-specific DNA methyltransferase M.Taq I in complex with the cofactor
S-adenosylmethionine. Proc. Natl. Acad. Sci. USA 91:10957-10961.PubMed
ID:7971991
- Landry, D., Looney, M. C., Feehery, G. R., Slatko, B. E., Jack, W. E., Schildkraut, I., and Wilson, G. G. (1989).
M.FokI methylates adenine in both strands of its asymmetric recognition sequence. Gene 77:1-10.PubMed
ID:2744483
- Landry, D., Barsomian, J. M., Feehery, G. R., and Wilson, G. G. (1992). Characterization of Type II DNA-Methyltransferases.
Methods Enzymol. 216:244-259.PubMed
ID:1479902
- Lee, K-F, Shaw, P-C, Picone, S.J., Wilson, G.G. and Lunnen, K.D. (1998). Sequence Comparison of the EcoHK31I
and EaeI Restriction-Modification Systems Suggests an Intergenic Transfer of Genetic Material. Biol. Chem. 379:437-441.PubMed
ID:9628335
- Limberger, R. J., and McReynolds, L. A. (1990). Filarial paramyosin: cDNA sequences from Dirofilaria immitis
and Onchocerca volvulus. Mol. Biochem. Parasitol. 38:271-280.PubMed
ID:2325708
- Lin, L.F., Posfai, J., Roberts, R.J. and Kong, H. (2001). Comparative genomics of the restriction-modification
systems in Helicobacter pylori. Proc. Natl. Acad. Sci. USA 98:2740-2745.
- Liu, Y., Guan, C. and Aronson, N. N., Jr. (1998). Site-directed Mutagenesis of Essential Residues Involved in
the Mechanism of Bacterial Glycosylasparaginase. J. Biol. Chem. 273(16):9688-9694.PubMed
ID:9545303
- Looney, M. C., Moran, L. S., Jack, W. E., Feehery, G. R., Benner, J. S., Slatko, B. E., and Wilson, G. G. (1989).
Nucleotide sequence of the FokI restriction-modification system: separate strand-specificity domains in the methyltransferase.
Gene 80:193-208.PubMed
ID:2684765
- Low, K. G., Dorner, L. F., Fernando, D. B., Grossman, J., Jeang, K. T., and Comb, M. J. (1997). Human T-Cell
Lukemia Virus Type 1 Tax Releases Cell Cycle Arrest Induced by p16INK4a. J. Virol. 71:1956-1962.PubMed
ID:9032327
- Lukacs, C.M., Kucera, R., Schildkraut, I. and Aggarwal, A.K. (2000).Understanding the immutability of restriction
enzymes: crystal structure of BglII and its DNA substrate at 1.5 angstrom resolution. Nature Struct. Biol. 7(2):134-140.PubMed
ID:10655616
- Lunnen, K. D., Barsomian, J. M., Camp, R. R., Card, C. O., Chen, S. Z., Croft, R., Looney, M. C., Meda, M. M.,
Moran, L. S., Nwankwo, D. O., Slatko, B. E., Van Cott, E. M., and Wilson, G. G. (1988). Cloning Type II restriction
and modification genes. Gene 74:25-32.PubMed
ID:3074013
- Lunnen, K. D., Morgan, R. D., Timan, C. J., Krzycki, J. A., Reeve, J. N., and Wilson, G. G. (1989). Characterization
and cloning of MwoI (GCN7GC), a new type-II restriction-modification system from Methanobacterium wolfei. Gene
77:11-19.PubMed
ID:2663652
- Ma, D., Hong, X. Q., Raghavan, N., Scott, A. L., McCarthy, J. A., Nutman, T. B., Williams, S. A., and Carlow,
C. K. S. (1996). A Cyclosporine A-Sensitive Small Molecular-Weight Cyclophilin Of Filarial Parasites. Molec. Biochem.
Parasitol. 79:235-241.PubMed
ID:8855561
- Ma, D. and Carlow, C. K. S. (1998). Active site mutants of a cyclosporin A-insensitive cyclophilin from Brugia
malayi: effect on catalysis and drug binding. Molec. Biochem. Parasitol., 92:361-365.
- Ma, D. and Carlow, C.K.S. (1999). Molecular characterization of FKBP13 from filarial parasites. Molec. Biochem.
Parasitol. 99:263-267.PubMed
ID:10340490
- Ma, D., Nelson, L.S., LeCoz, K., Poole, C. and Carlow, C.K.S. (2002). A novel cyclophilin from parasitic and
free-living nematodes with a unique substrate-and drug-binding domain. J. Biol. Chem. 277(17):14925-14932.PubMed
ID:11847225
- Maina, C. V., Grandea, A. G. I., Le, T. K. T., Nur, A., Williams, S. A., and McReynolds, L. A. (1987). Dirofilaria
immitis: Genomic Complexity and Characterication of a Structural Gene. Molecular Paradigms for Eradicating Helminthic
Parasites; Alan R. Liss, Inc., 193-204.
- Maina, C. V., Riggs, P. D., Grandea, A. G. I., Slatko, B. E., Moran, L. S., Tagliamonte, J. A., McReynolds, L.
A., and Guan, C. D. (1988). An Escherichia coli vector to express and purify foreign proteins by fusion to and
separation from maltose-binding protein. Gene 74:365-373.PubMed
ID:3073105
- Margot, J.B., Aguirre-Arteta, A.M., DiGiacco, B.V., Pradhan, S., Roberts, R.J., Cardoso, M.C. and Leonhardt,
H. (2000). Structure and function of the mouse DNA methyltransferase Gene, DNMT1 shows a tripartite structure.
J. Mol. Biol. 297:293-300.PubMed
ID:10715201
- Martin, D.D., Xu, M-Q and Evans, T.C. Jr. (2001). Characterization of a naturally occurring trans-splicing intein
from Synechocystis sp. PCC6803. Biochemistry 40(5):1393-1402.PubMed
ID:11170467
- Mathys, S., Evans, T.C., Chute, I.C., Wu, H., Chong, S., Benner, J., Liu, X.Q. and Xu, M.Q. (1999). Characterization
of a self-splicing mini-intein and its conversion into autocatalytic N- and C-terminal cleavage elements: facile
production of protein building blocks for protein ligation. Gene 231:1-13.PubMed
ID:10231563
- McClelland, M., and Nelson, M. (1985). The effect of site specific methylation on restriction endonuclease digestion.
Nucl. Acids Res. 13:r201-r207.PubMed
ID:2987886
- McClelland, M., Nelson, M., and Cantor, C. R. (1985). Purification of MboII methylase (GAAGmA) from Moraxella
bovis: site specific cleavage of DNA at nine and ten base pair sequences. Nucl. Acids Res. 13:7171-7182.PubMed
ID:2997742
- McClelland, M., Jones, R., Patel, Y., and Nelson, M. (1987). Restriction endonucleases for pulsed field mapping
of bacterial genomes. Nucl. Acids Res. 15:5985-6005.PubMed
ID:2819819
- McClelland, M., and Nelson, M. (1987). Enhancement of the apparent cleavage specificities of restriction endonucleases:
applications to megabase mapping of chromosomes., Volume 5, J. G. Chirikjian, ed. (Holland: Elsevier North ).
- McIlwrath, A.J. (2001). Qualitative detection of apoptotic cells assessed by DNA fragmentation. Methods Mol.
Biol. 174:189-195.PubMed
ID:11357643
- McReynolds, L. A., DeSimone, S. M., and Williams, S. A. (1986). Cloning and comparison of repeated DNA sequences
from the human filarial parasite Brugia malayi and the animal parasite Brugia pahangi. Proc. Natl. Acad. Sci. USA
83:797-801.PubMed
ID:3003750
- McReynolds, L. A., Poole, C. B., Williams, S. A., Partono F. Diagnosis of Filariasis with DNA Probes. Rapid Methods
and Automation in Microbiology and Immunology pgs 402-409. A. Vaheri, R.C. Tilton and A. Balows eds. (Springer-Verlag).
- McReynolds, L. A., Poole, C. B., and Williams, S. A. (1991). Filarial DNA probes in Jakarta. Parasitol. Today.
7:65 - 67.
- McReynolds, L. A., Kennedy, M. W., and Selkirk, M. E. (1993). The Polyprotien Allergens of Nematodes. Parasitol.
Today 9:403-406.
- McReynolds, L. A., Poole, C., Hong, Y., Williams, S. A., Partono, F., and Bradley, J. (1993). Recent Advances
in the Application of Molecular Biology in Filariasis. In Proceeding of the 34th SEAMEO TROPMED Regional Seminar:
Southeast Asian Journal of Tropical Medicine and Public Health) pp. 55-63.PubMed
ID:7973949
- Mejia, J. S., and Carlow, C. K. S. (1994). An analysis of the humoral immune response of dogs following vaccination
with irradiated infective larvae of Dirofilaria immitis. Parasite Immunol. 16:157-164.PubMed
ID:8208588
- Mejia, S.J., Knenfou, C., Southworth, M.W., Perler, F. B. and Carlow, C.K. (1994). Expression of an Onchocerca
volvulus Ov33 homolog in Dirofilaria immitis: potential in immunodiagnosis of heartworm infection.. Parasite Immunol.
16:297-303PubMed
ID:7970866
- Mi, S., Alonso, D., and Roberts, R. J. (1995). Functional analysis of Gln-237 mutants of HhaI methyltransferase.
Nucl. Acids Res. 23:620-627.PubMed
ID:7899082
- Milkman, R., Cryderman, D., McKane, M., McWeeny, K. and Raleigh E.A. (1998). Evolutionary evidence for recombination
among bacteria in nature. E. coli. In Horizontal Gene Transfer (M.S. & Kado, C.), pages 226-240. Chapman and
Hall, London
- Milkman, R., Raleigh, E.A., McKane, M., Cryderman, D. and Pohlman, K. (1999). Molecular evolution of the Escherichia
coli chromosome. V. Recombination patterns among strains of diverse origin. Genetics 153:539-554.PubMed
ID:10511538
- Mikol, V., Ma, D., Carlow, C. K. S. (1998) Crystal Structure of the Cyclophilin-like Domain from the Parasitic
Nematode Brugia Malayi. Protein Sci. 7:1310-1316.PubMed
ID:9655334
- Moran, L. S., Maina, C. V., Poole, C. B., and Slatko, B. E. (1990). Nucleotide sequence of the phage l gt11 SacI-KpnI
lacZ region. Gene 93:163-164.PubMed
ID:2146187
- Moreira, R. F., and Noren, C. J. (1995). Minimum duplex requirements for restriction enzyme cleavage near the
termini of linear DNA fragments. Biotechniques 19:56-59.PubMed
ID:7669297
- Morgan, R. D., Dalton, M., and Stote, R. (1987). A unique type II restriction endonuclease from Acinetobacter
lwoffi N. Nucl. Acids Res. 15:7201.PubMed
ID:2821501
- Morgan, R. D. (1988). MseI, a unique restriction endonuclease from Micrococcus species which recognizes 5'T^TAA
3'. Nucl. Acids Res. 16:3104.PubMed
ID:2835752
- Morgan, R. D., Camp, R. R., Wilson, G. G., and Xu, S. Y. (1996). Molecular cloning and expression of NlaIII restriction-modification
system in E. coli. Gene 183:215-218.PubMed
ID:8996109
- Morgan, R., Xiao, J. P. and Xu, S. Y. (1998). Characterization of an Extremely Thermostable Restriction Enzyme,
PspGI, from a Pyrococcus Strain and Cloning of the PspGI Restriction-Modification System in Escherichia coli. Appl.
Environ. Microbiol. 64(10):3669-3673.PubMed
ID:9758783
- Morgan, R., Calvet, C., Demeter, M., Agra, R. and Kong, H. (2000). Characterization of the Specific DNA Nicking
Activity of Restriction Endonuclease N.BstNBI. Biol. Chem. 381:1123-1125.PubMed
ID:11154070
- Narva, K. E., Van Etten, J. L., Slatko, B. E. and Benner, J. S. (1988). The Amino Acid Sequence of the Eukaryotic
DNA [N6-adenine] Methyltransferase, M-CviBIII, Has Regions of Similarity With the Prokaryotic Isoschizomer M-TaqI
and Other DNA [N6-adenine] Methyltransferases. Gene 74:253-259.PubMed
ID:3248728
- Nastri, H. G., Evans, P. D., Walker, I. H., and Riggs, P. D. (1997). Catalytic and DNA Binding Properties of
PvuII Restriction Endonuclease Mutants. J. Biol. Chem. 272:25761-25767.PubMed
ID:9325303
- Nathan, P.D. and Brooks, J.E. (1988). Characterization of clones of the BamHI methyltransferase gene. Gene 74:35-36.PubMed
ID:3248731
- Nelson, M., Christ, C., and Schildkraut, I. (1984). Alteration of apparent restriction endonuclease recognition
specificities by DNA methylases. Nucl. Acids Res. 12:5165-5173.PubMed
ID:6087274
- Nelson, M., and McClelland, M. (1987). The effect of site-specific methylation on restriction-modification enzymes.
Nucl. Acids Res. 15:r219-r230.PubMed
ID:3033612
- Nelson, M., and Schildkraut, I. (1987). The use of DNA methylases to alter the apparent recognition specificities
of restriction endonucleases. Methods Enzymol. 155:41-48.PubMed
ID:2828873
- Nelson, M., and McClelland, M. (1987). Purification and assay of Type II DNA methylases. Methods Enzymol. 155:32-41.PubMed
ID:2828871
- Newman, M., Strzelecka, T., Dorner, L. F., Schildkraut, I., and Aggarwal, A. K. (1994). Structure of restriction
endonuclease BamHI and its relationship to EcoRI. Nature, 368:660-664.PubMed
ID:8145855
- Newman, M., Strzelecka, T., Dorner, L. F., Schildkraut, I., and Aggarwal, A. K. (1994). Structure of restriction
endonuclease BamHI phased at 1.95 A resolution by MAD analysis. Structure 2:439-452.PubMed
ID:8081758
- Newman, M., Strzelecka, T., Dorner, L. F., Schildkraut, I., and Aggarwal, A. K. (1995). Structure of BamHI endonuclease
bound to DNA: partial folding and unfolding on DNA binding. Science 269:656-663.PubMed
ID:7624794
- Newman, M., Lunnen, K., Wilson, G., Greci, J., Schildkraut, I., Phillips, S. E. (1998). Crystal Structure of
Restriction Endonuclease BgII Bound to its Interrupted DNA Recognition Sequence. EMBO J. 17(18):5466-5476.PubMed
ID:9736624
- Ngu, J. L., Knenfou, C., Capuli, E., McMoli, T. E., Perler, F., Mbwagbor, J., Tumme, C., Nlatte, O. B., Donfack,
J. and Asonganyi, T. (1998). Novel, sensitive and low-cost diagnostic tests for "river blindness" - detection of
specific antigens in tears, urine and dermal fluid. Trop. Med. Inter. Health 3(5):339-348.PubMed
ID:9623938
- Nichols, N.M., Benner, J.S., Martin, D.D. and Evans, T.C. Jr. (2003). Zinc Ion Effects on Individual Ssp DnaE
Intein Splicing Steps: Regulating Pathway Progression. Biochemistry 42:5301-5311.PubMed
ID:12731871
- Noren, C. J., and Moreira, R. F. (1996). Potent Inhibition Of T7 Rna-Polymerase With A Truncated T7 Promoter.
Abstracts Of Papers Of The American Chemical Society 211, 156-Ched.
- Noren, C.J., Wang, J. and Perler, F.B. (2000). Dissecting the Chemistry of Protein Splicing and its Applications.
Angew. Chem. Int. Ed. 39:450-466.
- Noren, K.A., Saltman, L.H. and Noren, C.J. (2000A). Construction and use of pIII-displayed peptide libraries" in
Phage Display: A Laboratory Manual, pages 19.11-19.41 (Barbas, C.F., Burton, D.R., Scott, J.K. and Silverman, G.J.
eds), CSHL Press.
- Noren, K.A. and Noren, C.J. (2001). Construction of high-complexity combinatorial phage display peptide libraries.
Methods 23(2):169-178.PubMed
ID:11181036
- Nwankwo, D., and Wilson, G. (1987). Cloning of two type II methylase genes that recognise asymmetric nucleotide
sequences: FokI and HgaI. Mol. Gen. Genet. 209:570-574.PubMed
ID:2828884
- Nwankwo, D. O., and Wilson, G. G. (1988). Cloning and expression of the MspI restriction and modification genes.
Gene 64:1-8.PubMed
ID:2456254
- Nwankwo, D. O., Moran, L. S., Slatko, B. E., Waite-Rees, P. A., Dorner, L. F., Benner, J. S., and Wilson, G.
G. (1994). Cloning, analysis and expression of the HindIII R-M-encoding genes. Gene 150 75-80.PubMed
ID:7959067
- Nwankwo, D. O. (1995). Cloning of a pair of genes encoding isoschizomeric restriction endonucleases from Bacillus
species: the BspEI and BspMII restriction and modification systems. Gene, 157:31-35.PubMed
ID:7607514
- Nwankwo, D. O., Lynch, J. J., Moran, L. S., Fomenkov, A., and Slatko, B. E. (1996). The XmnI Restriction-Modification
System - Cloning, Expression, Sequence Organization And Similarity Between The R And M-Gene. Gene 173:121-127.PubMed
ID:8964488
- Nwankwo, D. O., Maunus, R. E., and Xu, S. Y. (1997). Cloning and expression of AatII restriction-modification
system in Escherichia coli. Gene 185:105-109.PubMed
ID:9034320
- O'Gara, M., Klimasauskas, S., Roberts, R., and Cheng, X. D. (1996). Enzymatic C5-Cytosine Methylation Of DNA
- Mechanistic Implications Of New Crystal-Structures For HhaI Methyltransferase-DNA-Adohcy Complexes. J. Mol. Biol.
261:634-645.PubMed
ID:8800212
- O'Gara, M., Roberts, R. J., and Cheng, X. (1996). A Structural Basis for the Preferential Binding of Hemimethylated
DNA by HhaI DNA Methyltransferase. J. Mol. Biol. 263 597-606.PubMed
ID:8918941
- O'Gara, M., Horton, J.R., Roberts, R.J. and Cheng, X. (1998). Structures of HhaI methyltransferase complexed
with substrates containing mismatches at the target base. Nature Struct. Biol. 5(10):872-877.PubMed
ID:9783745
- O'Gara, M., Zhang, X., Roberts, R.J. and Cheng, X. (1999). Structures of a Binary Complex of HhaI Methyltransferase
with S-adenosyl-L-methionine Formed in the Presence of a Short Non-specific DNA Oligonucleotide. J. Mol. Biol.
287:201-209.PubMed
ID:10080885
- O'Loughlin, T.J., Xu, Q., Kucera, R.B., Dorner, L.F., Sweeney, S., Schildkraut, I. and Guo, H.-C. (2000). Crystallization
and preliminary X-ray diffraction analysis of MspI restriction endonuclease in complex with its cognate DNA. Acta
Cryst. D56:1652-1655.PubMed
ID:11092936
- Page, A. P., Kumar, S., and Carlow, C. K. S. (1995). Parasite Cyclophilins and Antiparasite Activity of Cyclosporin
A. Parasitology Today 11:385-388.
- Page, A. P., Landry, D., Wilson, G. G., and Carlow, C. K. S. (1995). Molecular Characterization of a Cyclosporin
A-Insensitive Cyclophilin from the Parasitic Nematode Brugia malayi. Biochemistry 34:11545-11550.PubMed
ID:7547885
- Panne, D., Raleigh E. A., Bickle, T. A. (1998). McrBs, a modulator peptide for McrBC activity. EMBO J. 17:5477-5483.PubMed
ID:9736625
- Panne, D., Raleigh E. A. and Bickle, T. A. (1999). The McrBC Endonuclease Translocates DNA in a Reaction Dependent
on GTP Hydrolysis. J. Mol. Biol. 290:49-60.PubMed
ID:10388557
- Patel, Y., Van Cott, E., Wilson, G. G., and McClelland, M. (1990). Cleavage at the twelve-base-pair sequence
5'-TCTAGATCTAGA-3' using M.XbaI (TCTAGm6A) methylation and DpnI (Gm6A/TC) cleavage. Nucl. Acids Res. 18:1603-1607.PubMed
ID:2158082
- Perler, F. B. and Efstratiadis, A. (1980). The Evolution of Genes: the Chicken Preproinsulin Gene. Cell 20:555-566.PubMed
ID:7388949
- Perler, F. B., and Karam, M. (1986). Cloning and characterization of two Onchocerca volvulus repeated DNA sequences.
Mol. Biochem. Parasitol. 21:171-178.PubMed
ID:3024001
- Perler, F. B., Moon, A. M., Qiang, B.-Q., Meda, M., Dalton, M., Card, C., Schmidt-Ullrich, R., Wallach, D., Lynch,
J., and Donelson, J. E. (1987). Cloning and characterization of an abundant Plasmodium knowlesi antigen which cross
reacts with Gambian sera. Mol. Biochem. Parasitol. 25:185-193.PubMed
ID:2444886
- Perler, F. B., Comb, D. G., Jack, W. E., Moran, L. S., Qiang, B., Kucera, R. B., Benner, J., Slatko, B. E., Nwankwo,
D. O., Hempstead, S. K., Carlow, C. K. S. and Jannasch, H. (1992) Intervening sequences in an Archaea DNA polymerase
gene. Proc. Natl. Acad. Sci. USA 89:5577-5581.PubMed
ID:1608969
- Perler, F. B., Davis, E. O., Dean, G. E., Gimble, F. S., Jack, W. E., Neff, N., Noren, C. J., Thorner, J., and
Belfort, M. (1994) Protein splicing elements: inteins and exteins - a definition of terms and recommended nomenclature.
Nucl. Acids Res. 22:1125-1127.PubMed
ID:8165123
- Perler, F. B., Southworth, M. W., Wilbur, D. G., and Wallace, D. (1995). Typing marine vent thermophiles by DNA
polymerase restriction fragement length polymorphisms. In: Archaea A Laboratory Manual, Robb, R.T. and Place, A.R.,
Eds. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY 3, 139-147.
- Perler, F. B., Kumar, S., and Kong, H. (1996) Thermostable DNA Polymerases. In Enzymes and Proteins from Hyperthermophilic
Microorganisms, Advs. Protein Chemistry, M.W.W. Adams, ed. (New York: Academic Press), pp. 377-435.
- Perler, F. B., Olsen, G. J., and Adam, E. (1997) Compilation and analysis of intein sequences. Nuc. Acids Res.
25:1087-93.PubMed
ID:9092614
- Perler, F. B., Xu, M.-Q. and Paulus, H. (1997A) Protein splicing and autoproteolysis mechanisms. Curr. Opin.
Chem. Biol. 1:292-299.
- Perler, F. B. (1998) Protein Splicing of inteins and hedgehog autoproteolysis: structure, function and evolution.
Cell 92:1-4. PubMed
ID:9489693
- Perler, F. B. (1998A). Breaking up is easy with esters [news; comment]. Nat Struct Biol. 5:249-252. PubMed
ID:9546209
- Perler, F. B. (1999). A natural example of protein trans-splicing. TIBS 24:209-211. PubMed
ID:10366843
- Perler, F. B. (1999A). InBase, the New England Biolabs Intein Database. Nuc. Acids Res. 27(1):346-347. PubMed
ID:9847224
- Perler, F.B., Xu, M. and Noren, C.J. (1999B). "Protein Splicing" In: The Encyclopedia of Molecular Biology, ed.,
Creighton, T.E., (John Wiley and Sons, New York) Vol 3, pages 2011-2016.
- Perler, F.B. (2000). InBase, the Intein Database. Nuc. Acids Res. 28(1):344-345. PubMed
ID:10592269
- Perler, F.B. and Adam, E. (2000A). Protein splicing and its applications. Curr. Opin. Biotech. 11:377-383.
- Perler, F.B. (2001). Hyperthermophilic Inteins. Methods Enzymol. 334:270-280.PubMed
ID:11398469
- Perler, F.B. (2002). InBase, the Intein Database. Nuc. Acids Res. 30(1):383-384. PubMed
ID:11752343
- Perler, F.B., Chen, L. and Southworth, M.W. (2002). The mechanism of protein splicing: variations on a theme.
In Peptides: Proceedings of the Twnety-Seventh European Peptide Symposium (E. Benedetti and C. Pedone, eds.) Napoli,
Italy, Edizioni Ziino, pages 254-255.
- Petronzio, T., and Schildkraut, I. (1990). Altered specificity of restriction endonucleases HinfI. Nucl. Acids
Res. 18:3666.PubMed
ID:2362828
- Philipp, M. (1984). Acetylcholinesterase secreted by intestinal nematodes: a reinterpretation of its putative
role of "biochemical holdfast." Trans. Royal Soc Trop. Med. and Hyg. 78:138-139.
- Philipp, M., and Davis, T. B. (1986). Biochemical and immunologic characterization of a major surface antigen
of Dirofilaria immitis infective larvae. J. Immunol. 136 2621-2627.PubMed
ID:2419445
- Philipp, M., Davis , T. B., Storey, N., and Carlow, C. K. S. (1988). IMMUNITY IN FILARIASIS: Perspectives for
Vaccine Development. Ann. Rev. Microbiol. 42:685-716.PubMed
ID:3060005
- Piessens, W. F., McReynolds, L. A. and Williams, S. A. (1987). Highly Repeated DNA Sequences as Species-specific
Probes for Brugia. Parasitology Today 3(12):378-379.
- Pingoud, V., Conzelmann, C., Kinzebach, S., Sudina, A., Metelev, V., Kubareva, E., Bujnicki, J.M., Lurz, R.,
Luder, G., Xu, S.Y. and Pingoud, A. (2003). PspGI, a type II restriction endonuclease from the extreme thermophile
Pyrococcus sp.: structural and functional studies to investigate an evolutionary relationship with several mesophilic
restriction enzymes. J. Mol. Biol. 329(5):913-929. PubMed
ID:12798682
- Polakiewicz, R.D., Schieferl, S.M., Dorner, L.F., Kansra, V. and Comb, M.J. (1998a). A Mitogen-activated Protein
Kinase Pathway is Required for mu-Opioid Receptor Desensitization. J Biol Chem 273(20):12402-12406.PubMed
ID:9575195
- Polakiewicz, R.D., Schieferl, S.M., Gingras, A-C., Sonenberg, N. and Comb, M.J. (1998b). Mu-Opioid Receptor Activates
Signaling Pathways Implicated In Cell Survival And Translational Control. J. Biol. Chem. 273:23534-23541.PubMed
ID:9722592
- Poland, B.W., Xu, M.Q. and Quiocho, F.L. (2000). Structural Insights into the Protein Splicing Mechanism of PI-SceI.
J. Biol. Chem. 275:16408-16413.PubMed
ID:10828056
- Polisson, C., and Morgan, R. D. (1988). BsrI, a unique restriction endonuclease from Bacillus stearothermophilus
which recognizes 5'ACTGG3'. Nucl. Acids Res. 16:5205.PubMed
ID:2838810
- Polisson, C., and Morgan, R. D. (1988). EarI, a restriction endonuclease from Enterobacter aerogenes which recognizes
5'CTCTTC3'. Nucl. Acids Res. 16:9872.PubMed
ID:3263622
- Polisson, C., and Morgan, R. D. (1988). AseI, a restriction endonuclease from Aquaspirillum serpens which recognizes
5'ATTAAT3'. Nucl. Acids Res. 16:10365.PubMed
ID:3264065
- Polisson, C., and Morgan, R. D. (1989). DrdI, a unique restriction endonuclease from Deinococcus radiodurans
which recognizes 5'GACN6GTC3'. Nucl. Acids Res. 17:3316.PubMed
ID:2542897
- Polisson, C. (1989). MscI, a type II restriction endonuclease from Micrococcus species which recognizes 5' TGGCCA
3'. Nucl. Acids Res. 17:5858.PubMed
ID:2788270
- Polisson, C., and Morgan, R. D. (1990). AciI, a unique restriction endonuclease from Arthrobacter citreus which
recognizes 5' CCGC3'. Nucl. Acids Res. 18:5911.PubMed
ID:2170952
- Polisson, C., and Robinson, D. (1992). ApoI, a unique restriction endonuclease from Arthrobacter protophormiae
which recognizes 5' RAATTY-3'. Nucl. Acids Res. 20:2888.PubMed
ID:1614876
- Poole, C. B., Grandea, A. G., III, Maina, C. V., Jenkins, R. E., Selkirk, M. E., and McReynolds, L. A. (1992).
Cloning of a cuticular antigen that contains multiple tandem repeats from the filarial parasite Dirofilaria immitis.
Proc Natl Acad Sci U S A. 89:5986-5990.PubMed
ID:1631084
- Poole, C. B., Hornstra, L. J., Benner, J. S., Fink, J. R., and McReynolds, L. A. (1996). Carboxy-terminal sequence
divergence and processing of the polyprotein antigen from Dirofilaria immitis1. Molec. Biochem. Parasitol. 82:51-65.PubMed
ID:8943150
- Poole, C. B., Jin, J. and McReynolds, L. A. (2003). Cloning and Biochemical Characterization of Blisterase, a
Subtilisin-like Convertase from the Filarial Parasite, Onchocerca volvulus. J. Biol. Chem. 278(38):35183-36190.PubMed
ID:12855702
- Posfai, J., Szaraz, Z., and Roberts, R. J. (1994). VISA: Visual Sequence Analysis for the comparison of multiple
amino acid sequences. CABIOS 10:537-544.PubMed
ID:7828070
- Pradhan, S., Talbot, D., Sha, M., Benner, J., Hornstra, L., Li, E., Jaenisch, R. and Roberts, R. J. (1997). Baculovirus-Mediated
Expression and Characterization of the Full-Length Murine DNA Methyltransferase. Nuc. Acids Res. 22:4666-4673. PubMed
ID:9358180
- Pradhan, S., Cummings, M., Roberts, R. J. and Adams, R. L. P. (1998). Isolation, Characterization and Baculovirus-Mediated
Expression of the cDNA Encoding Cytosine DNA Methyltransferase from Pisum Sativum. Nuc. Acids Res. 26:1214-1222. PubMed
ID:9469828
- Pradhan, S., Urwin, N.A., Jenkins, G.I. and Adams, R.L. (1999). Effect of CWG methylation on expression of plant
genes. Biochem J. 341:473-476.PubMed
ID:10417307
- Pradhan, S., Bacolla, A., Wells, R.D. and Roberts, R.J. (1999). Recombinant Human DNA (Cytosine-5) Methyltransferase.
I. expression, purification, and comparison of de novo and maintenance. J. Biol. Chem. 274:33002-33010.PubMed
ID:10551868
- Pradhan, S and Roberts, R.J. (2000). Hybrid mouse-prokaryotic DNA (Cytosine-5) methyltransferase retain the specificity
of the parental C-terminal domain. EMBO J. 19:2103-2114.PubMed
ID:10790376
- Pradhan, S. and Kim, G.-D. (2002). The retinoblastoma gene product interacts with maintenance human DNA (Cytosine-5)
methyltransferase and modulates its activity. EMBO J. 21(4):779-788.PubMed
ID:11847125
- Pradhan, S. and Esteve P.-O. (2003). Allosteric Activator Domain of Maintenance Human DNA (Cytosine-5) Methyltransferase
and Its Role in Methylation Spreading. Biochemistry 42(18):5321-5332.PubMed
ID:12731873
- Pradhan, S. and Esteve P.-O. (2003). Mammalian DNA (cytosine-5) methyltransferases and their expression. Clin.
Immunol. 109(1):6-16.PubMed
ID:14585271
- Punkosdy, G.A., Dennis, V.A., Lasater, B.L., Tzertzinis, G. foster, J.M. and Lammie, P.J. (2001). Detection of
Serum IgG Antibodies Specific for Wolbachia Surface Protein in Rhesus Monkeys Infected with Brugia malayi. J Infectious
Diseases 184:385-389.PubMed
ID:11443570
- Qian, X., Guan, C. and Guo, H.-C. (2003). A Dual Role for an Aspartic Acid in Glycosylasparaginase Autoproteolysis.
Structure 11:997-1003.PubMed
ID:12906830
- Qiang, B. Q., and Schildkraut, I. (1984). A type II restriction endonuclease with an eight nucleotide specificity
from Streptomyces fimbriatus. Nucleic Acids Res. 12:4507-4516.PubMed
ID:6330673
- Qiang, B. Q., and Schildkraut, I. (1986). Two unique restriction endonucleases from Neisseria lactamica. Nucl.
Acids Res. 14:1991-1999.PubMed
ID:3008082
- Qiang, B.-Q., and Schildkraut, I. (1987). NotI and SfiI: restriction endonucleases with octanucleotide recognition
sequences. Methods Enzymol. 155:15-21.PubMed
ID:2828862
- Raghavan, N., McReynolds, L. A., Maina, C. V., Feinstone, S. M., Jayaraman, K., Ottesen, E., and Nutman, T. B.
(1991). Characterization of a recombinant clone of Wuchereria bancrofti with specificity for human lymphatic filarial
parasites. Mol. Biochem. Parasitol. 47:63-71.PubMed
ID:1857386
- Raghavan, N., Maina, C. V., Fitzgerald, P. C., Tuan, R. S., Slatko, B. E., Ottesen, E. A., and Nutman, T. B.
(1992). Characterization of a muscle-associated antigen from Wuchereria bancrofti. Exp. Parasitol. 75:379-389.PubMed
ID:1283597
- Rajski, S.R., Kumar, S., Roberts, R.J. and Barton, J.K. (1999). Protein-Modulated DNA Electron Transfer. J. Am.
Chem. Soc. 121:5615-5616.
- Raleigh, E. A., and Wilson, G. (1986). Escherichia coli K-12 restricts DNA containing 5-methylcytosine. Proc.
Natl. Acad. Sci. USA 83:9070-9074.PubMed
ID:3024165
- Raleigh, E. A. (1987). Restriction and modification in vivo by Escherichia coli K12. Methods Enzymol. 152:130-141.PubMed
ID:2821354
- Raleigh, E. A., Murray, N. E., Revel, H., Blumenthal, R. M., Westaway, D., Reith, A. D., Rigby, P. W. J., Elhai,
J., and Hanahan, D. (1988). McrA and McrB restriction phenotypes of some E. coli strains and implications for gene
cloning. Nucl. Acids Res. 15:1563-1575.PubMed
ID:2831502
- Raleigh, E. A., Trimarchi, R., and Revel, H. (1989). Genetic and physical mapping of the mcrA (rglA) and mcrB
(rglB) loci of Escherichia coli K-12. Genetics 122:279-296.PubMed
ID:2548920
- Raleigh, E. A., Benner, J., Bloom, F., Braymer, H. D., DeCruz, E., Dharmalingam, K., Heitman, J., Noyer-Weidner,
M., Piekarowicz, A., Kretz, P. L., Short, J. M., and Woodcock, D. (1991). Nomenclature relating to restriction
of modified DNA in Escherichia coli. J. Bacteriol. 173:2707-2709.PubMed
ID:2013582
- Raleigh, E. A. (1992). Organization and function of the mcrBC genes of Escherichia coli K-12. Mol. Microbiol
6:1079-1086.PubMed
ID:1316984
- Raleigh, E., Dila, D., Sutherland, E., Kelleher, J., Moran, L., Slatko, B., and Briggs, P. (1993). McrBC, a novel
multisubunit GTP-dependent restriction endonuclease. J. Cell Biochem. Suppl. 17C, 152.
- Raleigh, E. A. and Brooks, J. E (1998). Restriction Modification Systems: Where They Are and What They Do. Bacterial
Genomes 78-92. F. J. de Bruijn, J. R. Lupski and G. M. Weinstock eds. (Chapman & Hall).
- Rao, V., Guan, C., and Van Roey, P. (1995). Crystal structure of endo-beta-N-acetylglucosaminidase H at 1.9 A
resolution: active-site geometry and substrate recognition. Structure 3:449-457.PubMed
ID:7663942
- Rao, V., Cui, T., Guan, C., and Van Roey, P. (1999). Mutations of endo-B-N-acetylglucosaminidase H active site
residues Asp130 and Glu132: Activities and conformations. Protein Sci. 3:449-457.
- Rees, P. A., Nwankwo, D. O., Wilson, G. G., and Benner, J. S. (1988). Cloning, purification and characterization
of the HincII and HindII methyltransferases from Haemophilus influenzae. Gene 74:37.PubMed
ID:3074015
- Reinecke, S. N., and Morgan, R. D. (1991). BfaI, a new MaeI isoschizomer from Bacteroides fragilis, recognizes
the sequence 5' C^TAG 3'. Nucl. Acids Res. 19:1152.PubMed
ID:2020550
- Renbaum, P., Abrahamove, D., Fainsod, A., Wilson, G. G., Rottem, S., and Razin, A. (1990). Cloning, characterization,
and expression in Escherichia coli of the gene coding for the CpG DNA methylase from Spiroplasma sp. strain MQ1(M.SssI).
Nucl. Acids Res. 18:1145-1152.PubMed
ID:2181400
- Riggs, P. Detection and Isolation of Recombinant Protein Based on Binding Affinity Reporter, Meth. Molec. Biol.
63:85-101. (R. Tuan Humana Press, Inc.)
- Riggs, P. (2000). Expression and purification of recombinant proteins by fusion to maltose-binding protein. Mol.
Biotechnol. 15(1):51-63.PubMed
ID:10911622
- Roberts, R.J. and Macelis, D. (1993). REBASE-restriction enzymes and methylases. Nucl. Acids Res. 21:3125-3137.PubMed
ID:8392714
- Roberts, R.J. and Halford, S.E. (1993). Type II Restriction Endonucleases, Nucleases, 2nd Edition, 35 - 88. S.
M. Linn, R. S. Lloyd and R. J. Roberts, eds. (Cold Spring Harbor: Cold Spring Harbor Laboratory Press).
- Roberts, R.J. and Macelis, D. (1993). The Restriction Enzymes., Nucleases, 2nd Edition, 439-444. S. M. Linn,
R. S. Lloyd and R. J. Roberts, eds. (Cold Spring Harbor: Cold Spring Harbor Laboratory Press).
- Roberts, R.J. (1994). An amazing distortion in DNA induced by a methyltransferase (Nobel lecture). Angew. Chem.
Int. Ed. Engl. 33:1222-1228.
- Roberts, R.J. (1994). An amazing distortion in DNA induced by a methyltransferase (Nobel lecture). Bioscience
Reports 14(3):103-117.
- Roberts, R.J. and Macelis, D. (1994). REBASE - restriction enzymes and methylases. Nucl. Acids. Res. 22:3628-3639.PubMed
ID:7937073
- Roberts, R.J. (1995). On base flipping. Cell 82:9-12.PubMed
ID:7606789
- Roberts, R.J. and Macelis, D. (1996). REBASE--restriction enzymes and methylases. Nucl. Acids Res. 24:223-235.PubMed
ID:8594587
- Roberts, R.J. (1996). Teaching About Science, Accountability in Research, Volume 5, 45-50 (Overseas Publishers
Association).
- Roberts, R.J. and Macelis, D. (1997). REBASE-restriction enzymes and methylases. Nucl. Acids Res. 25:248-262.PubMed
ID:9016548
- Roberts, R.J. and Macelis, D. (1998). REBASE-restriction enzymes and methylases. Nucl. Acids Res. 26:338-350.PubMed
ID:9399870
- Roberts, R.J. and Cheng, X. (1998). Base Flipping. Annual Review Biochem. 67:181-198.
- Roberts, R.J. and Macelis, D. (1999). REBASE-restriction enzymes and methylases. Nucl. Acids Res. 27(1):312-313.PubMed
ID:9847213
- Roberts, R.J. (2000). The early days of bioinformatics publishing. Bioinformatics 16(1):2-4.PubMed
ID:10812470
- Roberts, R.J. and Macelis, D. (2000A). REBASE-restriction enzymes and methylases. Nucl. Acids Res. 28(1):306-307.PubMed
ID:10592256
- Roberts, R.J., and Macelis, D. (2001). REBASE-restriction enzymes and methylases. Nucl. Acids Res. 29(1):268-269.<PubMed
ID:11125108
- Roberts, R.J., Varmus, H.D., Ashburner, M., Brown, P.O., Eisen, M.B., Khosla, C., Kirschner, M., Nusse, R., Scott,
M. and Wold, B. (2001A). Information access. Building a "GenBank" of the published literature. Science 291(5512):2318-2319.PubMed
ID:11269300
- Roberts, R.J. (2001B). PubMed Central: The GenBank of the Published Literature. Proc. Natl. Acad. Sci. 98:381-382.PubMed
ID:11209037
- Roberts, R.J., Belfort, M. et al. (2003). A nomenclature for restriction enzymes, DNA methyltransferases, homing
endonucleases and their genes. Nucl. Acids Res. 31(7):1805-1812. PubMed
ID:12654995
- Roberts, R.J., Vincze, T., Posfai, J. and Macelis, D. (2003A). REBASE Restriction enzymes and methyltransferases.
Nucl. Acids Res. 31:418-420. PubMed
ID:12520038 A NAME="rodicio1994">
- Rodicio, M. R., Quinton-Jager, T., Moran, L. S., Slatko, B. E., and Wilson, G. G. (1994). Organization and sequence
of the SalI restriction-modification system. Gene 151:167-172.
- Ruan, H., Lunnen, K. D., Scott, M. E., Moran, L. S., Slatko, B. E., Pelletier, J. J., Hess, E. J., Benner, J.,
Wilson, G. G., and Xu, S. Y. (1996). Cloning and sequence comparison of AvaI and BsoBI restriction-modification
systems. Mol. Gen. Genet. 252:695-699.PubMed
ID:8917312
- Ruan, H., Lunnen, K. D., Pelletier, J. J., and Xu, S. Y. (1997). Overexpression of BsoBI restriction endonuclease
in E. coli, purification of the recombinant BsoBI, and identification of catalytic residues of BsoBI by random
mutagenesis. Gene 188:35-39.PubMed
ID:9099856
- Samuelson, J.C. and Xu, S. Y. (2002). Directed Evolution of Restriction Endonuclease BstYI to Achieve Increased
Substrate Specificity. J. Mol. Biol. 319:673-683.PubMed
ID:12054862
- Sandman, K., Perler, F. B., and Reeve, J. N. (1994). Histone-encoding genes from Pyrococcus: evidence for members
of the HMf family of archaeal histones in a non-methanogenic Archaeon*. Gene 150:207-208.PubMed
ID:7959058
- Sandman, K.E., Benner, J.S. and Noren, C.J. (2000). Phage Display of Selenopeptides. J. Amer. Chem. Soc. Feb
9, 2000.
- Sandman, K.E. and Noren, C.J. (2000A). The efficiency of Escherichia coli selenocysteine insertion is influenced
by the immediate downstream nucleotide. Nucl. Acids Res. 28(3):755-761.PubMed
ID:10637327
- Sandman, K.E., Tardiff, D.F., Neely, L.A. and Noren, C.J. (2003). Revised Escherichia coli selenocysteine insertion
requirements determined by in vivo screening of combinatorial libraries of SECIS variants. Nucl. Acids Res. 31:2234-2241.PubMed
ID:12682374
- Schildkraut, I., Banner, C. D. B., Rhodes, C. S., and Parekh, S. (1984). The cleavage site for the restriction
endonuclease EcoRV is 5'-GAT^ATC-3'. Gene 27:327-329.PubMed
ID:6329909
- Schildkraut, I. (1984). Screening for and characterizing restriction endonucleases., Genetic Engineering 6:117-139,
J. K. Setlow and A. Hollaender, eds. (New York: Plenum).
- Schildkraut, I., Lynch, J., and Morgan, R. (1987). The cleavage site for the restriction endonucleases BanI and
HgiCI is 5' ...G^GPyPuCC ...3'. Nucl. Acids Res. 15:5492.PubMed
ID:3037499
- Schildkraut, I. (1993). Compilation of Commercially Available Nucleases, Nucleases, 2nd Ed. pgs 469-483 (Cold
Spring Harbor: Cold Spring Harbor Laboratory Press).
- Schluckebier, G., Labahn, J., Granzin, J., Schildkraut, I., and Saenger, W. (1995). A model for DNA binding and
enzyme action derived from crystallographic studies of the TaqI N6-adenine-methyltransferase. Gene 157:131-134.PubMed ID:7607476
- Sears, L. E., Moran, L. S., Kissinger, C., Creasey, T., Perry-O'Keefe, H., Roskey, M., Sutherland, E., and Slatko,
B. E. (1992). CircumVent» Thermal Cycle Sequencing and Alternative Manual and Automated DNA Sequencing Protocols
Using the Highly Thermostable VentR» (exo-) DNA Polymerase. BioTechniques 13:626-633.PubMed
ID:1476733
- Sears, L. E., Zhou, B., Aliotta, J. M., Morgan, R. D., and Kong, H. M. (1996). Bael, another unusual Bcgl-like
restriction-endonuclease. Nucl. Acids Res. 24:3590-3592.PubMed
ID:8836187
- Serva, S., Weinhold, E., Roberts R.J. and Klimasauskas S. (1998). Chemical display of thymine residues flipped
out by DNA methyltransferases. Nucl. Acids Res. 26:3473-3479.PubMed
ID:9671807
- Shao, Y., Xu, M.Q. and Paulus, H. (1995). Protein splicing: Chracterization of the aminosuccinimide residue at
the carboxyl terminus of the excised intervening sequence. Biochemistry 34:10844-10850.PubMed
ID:7662664
- Shao, Y., Xu, M. Q., and Paulus, H. (1996). Protein Splicing: Evidence for an N-O Acyl Rearrangement as the Initial
Step in the Splicing Process. Biochemistry 35:3810-3815.PubMed
ID:8620003
- Sharma, S., Zhang, A., Wang, H., Harcum, S.W. and Chong S. (2003). Study of protein splicing and intein-mediated
peptide bond cleavage under high-cell-density conditions. Biotechnol. Prog. 19(3):1085-1090.PubMed
ID:12790686
- Silber, K.R., Polisson, C., Rees, P.A., and Benner, J.S. (1988). Cloning, purification and characterization of
the M.NdeI methyltransferase from Neisseria denitrificans. Gene 74:43-44.PubMed
ID:3074017
- Slatko, B. E., Benner, J. S., Jager-Quinton, T., Moran, L. S., Simcox, T. G., VanCott, E. M., and Wilson, G.
G. (1987). Cloning, sequencing and expression of the TaqI restriction-modification system. Nucl. Acids Res. 15:9781-9796.PubMed
ID:2827113
- Slatko, B. E., Croft, R., Moran, L. S., and Wilson, G. G. (1988). Cloning and analysis of the HaeIII and HaeII
methyltransferase genes. Gene 74:45-50.PubMed
ID:3248732
- Slatko, B. (1994). Thermal cycle Dideoxy DNA Sequencing. Methods Molec. Biol. 58:413-423.
- Slatko, B., Heinrich, P., Nixon, B. T., Eckert, R. L., Albright, L., and Ausubel, F. (1994). DNA sequencing.
In: Current protocols in molecular biology. (Ausubel, F.M., Brent, R., Kingston, R.E., Moore, D.D., Seidman, J.G.,
Smith, J.A. and Struhl, K., Eds.) John Wiley & Sons, New York. Chapter 7, 7.0.1-7.6.13.
- Slatko, B. E. (1994). Thermal cycle dideoxy DNA sequencing, Methods Molec. Biol. 31:35-45.PubMed
ID:7921032
- Slatko, B. E. (1996). Thermal cycle dideoxy DNA sequencing, Mol. Biotechnol. 6:311-322.PubMed
ID:9067976
- Slatko, B.E., O'Neill, S.L., Scott, A.L., Werren, J.L., Blaxter, M.L. and the Wolbachia genome Consortium (1999).
The Wolbachia Genome Consortium. Microbiol. and Comparative Genomics 4(3):161-165.
- Sluder, A.E., Mathews, S.W., Hough, D., Yin, V.P. and Maina, C.V. (1999). The Nuclear Receptor Superfamily Has
Undergone Extensive Proliferation and Diversification in Nematodes. Genome Res. 9:103-130.PubMed
ID:10022975
- Sluder, A.E. and Maina, C.V. (2001). Nuclear receptors in nematodes: themes and variations. Trends in Genetics
17(4):206-213.
- Sohail, A., Ives, C. L., and Brooks, J. E. (1995). Purification and characterization of C.BamHI, a regulator
of the BamHI restriction-modification system. Gene 157:227-228.PubMed
ID:7607495
- Southworth, M. W., Kong, H., Kucera, R. B., Ware, J., Jannasch, H. W., and Perler, F. B. (1996). Cloning of thermostable
DNA polymerases from hyperthermophilic marine Archaea with emphasis on Thermococcus sp. 9 degrees N-7 and mutations
affecting 3'-5' exonuclease activity. Proc Natl Acad Sci 93:5281-5285.PubMed
ID:8643567
- Southworth, M. W., Fuhrman, J. A., Robbins, P. W., Beauregard, K., and Perler, F. B. (1996). Gene cloning and
production of active recombinant Brugia Malayi microfilarial chintinase. Gene 177:55-58.PubMed
ID:8921845
- Southworth, M. W., Adam, E., Panne, D., Byer, R., Kautz, R. and Perler, F. B. (1998). Control of protein splicing
by intein fragment reassembly. EMBO J 17:918-926.PubMed
ID:9463370
- Southworth, M. W., Amaya, K., Evans, T. C., Xu, M-Q and Perler, F. B. (1999). Purification of Proteins Fused
to Either the Amino or Carboxy Terminus of the Mycobacterium xenopi Gyrase A Intein. BioTechniques 27(1):110-120.PubMed
ID:10407673
- Southworth, M. W., Benner, J. and Perler, F. B. (2000). An alternative protein splicing mechanism for inteins
lacking an N-terminal nucleophile. EMBO J 19(18):5019-5026.PubMed
ID:10990465
- Southworth, M. W., Amaya, K., Evans, T. C., Xu, M. Q. and Perler, F. B. (2001). Purification of proteins fused
to either the amino or carboxy terminus of the Mycobacterium xenopi gyrase A intein. In Cloning and Expression
vectors for Gene Function Analysis (Q. Lu and M. Weiner, Eds.) Eaton Publishing, pp.55-59.
- Southworth, M.W. and Perler, F.B. (Nov 2002). Protein Splicing of the Deinococcus radiodurans Strain R1 Snf2
Intein. J. Bacteriol. 184(22):6387-6388. PubMed
ID:12399510
- Southworth, M.W. and Perler, F.B. (Nov 2002A). Inteins in microbial genomes: distribution, mechanism and function.
ScientificWorldJournal 2(Supp 2): 25-26.PubMed
ID:14532441
- Steel, C., Limberger, R. J., McReynolds, L. A., Ottesen, E. A., and Nutman, T. B. (1990). B CELL RESPONSES TO
PARAMYOSIN. Isotypic Analysis and Epitope Mapping of Filarial Paramyosin in Patients with Onchocerciasis. J. Immunol.
145:3917-3923.PubMed
ID:1701001
- Stewart, F. J. and Raleigh, E. A. (1998). Dependence of McrBC Cleavage on Distance Between Recognition Elements.
Biol. Chem. 379,611-616. PubMed
ID:9628366
- Stewart, F.J., Panne, D., Bickle, T.A. and Raleigh, E.A. (2000). Methyl-specific DNA Binding by McrBC, a Modification-dependent
Restriction Enzyme. J. Mol. Biol. 298:611-622.PubMed
ID:10788324
- Storey, N. and Philipp, M. (1992). Brugia malayi: patterns of expression of surface-associated antigens. Exp
Parasitol 74:57-68.PubMed
ID:1730272
- Strzelecka, T., Newman, M., Dorner, L. F., Knott, R., Schildkraut, I., and Aggarwal, A. K. (1994). Crystallization
and Preliminary X-ray Analysis of Restriction Endonuclease BamHI-DNA Complex. J. Mol. Biol. 239:430-432.PubMed
ID:8201623
- Sun, L.V., Foster, J.M., Tzertzinis, G., Ono, M., Bandi, C., Slatko, B.E. and O'Neill, S.L. (2001). Determination
of Wolbachia Genome Size by Pulsed-Field Gel Electrophoresis. J. Bacteriol. 183(7):2219-2225.PubMed
ID:11244060
- Sun, L., Ghosh, I., Paulus, H. and Xu, M.Q. (2001). Protein trans-Splicing To Produce Herbicide-Resistant Acetolactate
Synthase. Appl. Env. Microbiol. 67(3):1025-1029.PubMed
ID:11229887
- Sun, L., Ghosh, I. and Xu, M.Q. (2003). Generation of an affinity column for antibody purification by intein-mediated
protein ligation. J. Immunol. Methods 282(1-2):45-52.PubMed
ID:14604539
- Soundararajan, M., Chang, Z., Morgan, R.D., Heslop, P. and Connolly, B.A. (2002). DNA Binding and Recognition
by the IIs Restriction Endonuclease MboII. J. Biol. Chem. 277(2):887-895.PubMed
ID:11606594
- Sutherland, E., Coe, L., and Raleigh, E. A. (1992). McrBC: a multisubunit GTP-dependent restriction endonuclease.
J. Mol. Biol. 225:327-348.PubMed
ID:1317461
- Sznyter, L. A., Slatko, B., Moran, L., O'Donnell, K. H., and Brooks, J. E. (1987). Nucleotide sequence of the
DdeI restriction-modification system and characterization of the methylase protein. Nucl. Acids Res. 15:8249-8266.PubMed
ID:2823226
- Sznyter, L. A., and Brooks, J. E. (1988). The characterization and cloning of the EagI restriction-modification
system. Gene 74:53.PubMed
ID:3266860
- Szybalski, W., Blumenthal, R. M., Brooks, J. E., Hattman, S., and Raleigh, E. A. (1988). Nomenclature for bacterial
genes coding for class-II restriction endonucleases and modification methyltransferases. Gene 74:279-280.PubMed
ID:3266859
- Tan, Y., Low, K. G., Boccia, C., Grossman, J., and Comb, M. J. (1994). Fibroblast growth factor and cyclic AMP
(cAMP) synergistically active gene expression at a cAMP response element. Mol. Cell. Biol. 14:7546-7556.PubMed
ID:7935470
- Tan, Y., Rouse, J., Zhang, A., Cariati, S., Cohen, P., and Comb, M. J. (1996). FGF and stress regulate CREB and
ATF-1 via a pathway involving p38 MAP kinase and MAPKAP kinase-2. EMBO J 15:4629-4642.PubMed
ID:8887554
- Taron, C. H., Benner, J. S., Hornstra, L. J., and Guthrie, E. P. (1995). A novel beta-galactosidase gene isolated
from the bacterium Xanthomonas manihotis exhibits strong homology to several eukaryotic beta-galactosidases. Glycobiology
5:603-610.PubMed
ID:8563148
- Taron, C. H., Van Cott, E. M., Wilson, G. G., Moran, L. S., Slatko, B. E., Hornstra, L. J., Benner, J. S., Kucera,
R. B., and Guthrie, E. P. (1995). Cloning and expression of the NaeI restriction endonuclease-encoding gene and
sequence analysis of the NaeI restriction-modification system. Gene 155:19-25.PubMed
ID:7698663
- Telenti, A., Southworth, M., Alcaide, F., Aauglat, S., Jacobs Jr., W. R., and Perler, F. B. (1997). The Mycobacterium
xenopi GyrA Protein Splicing Element: Characterization of a Minimal Intein. J. Bacteriol. 179:6378-6382.PubMed
ID:9335286
- Theriault, G., Roy, P. H., Howard, K. A., Benner, J. S., Brooks, J. S., Waters, A. F., and Gingeras, T. R. (1985).
Nucleotide sequence of the PaeR7 restriction/modification system and partial characterization of its protein products.
Nucl. Acids Res. 13:8441-8461.PubMed
ID:3001639
- Toure, F. S., Bain, O., Nerrienet, E., Millet, P., Wahl, G., Toure, Y., Doumbo, O., Nicolas, L., Georges, A.
L., McReynolds, L. A., and Egwang, T. G. (1997). Detection of Loa loa-specific DNA in Blood from Occult-Infected
Individuals. Exp. Parasitol. 86:163-170.PubMed
ID:9225766
- Tuan, R. S., Shepley, K. J., M.M., M., Abraham, D., and Perler, F. B. (1991). Histochemical localization of gene
expression in Onchocerca volvulus: in situ DNA histohybridization and immuno-cytochemistry. Mol. Biochem. Parasitol.
49:191-203.PubMed
ID:1775163
- Tuckey, C.D. and Noren, C.J. (2002). Selection for mutants improving expression of an anti-MAP kinase monoclonal
antibody by filamentous phage display. J. Immunol. Methods 270:247-257.PubMed
ID:12379329
- Tweedie, S., Paxton. W, A., Ingram, L., Maizels, R. M., McReynolds, L. A., and Selkirk, M. E. (1993). Brugia
pahangi and Brugia malayi: A Surface-Associated Glycoprotein (gp15/400) is Composed of Multiple Tandemly Repeated
Units and Processed from a 400-kDa Precursor1. Exp. Parasitol. 76:156-164.PubMed
ID:8454024
- Vaisvila, R., Rasmussen, L.J., Lobner-Olsen, A., von Freisleben, U. and Marinus, M.G. (2000). The LipB protein
is a negative regulator of dam gene expression in Escherichia coli. Biochim. Biophys. Acta. 1494(1-2):43-53.PubMed
ID:11072067
- Vaisvila, R., Morgan, R.D., Posfai, J. and Raleigh, E.A. (2001). Discovery and distribution of super-integrons
among pseudomonads. Mol. Microbiol. 42(3):587-601.PubMed
ID:11722728
- Vanamee, E.S., Hsieh, P.C., Zhu, Z., Yates, D., Garman, E., Xu, S.Y. and Aggarwal, A.K. (2003). Glucocorticoid
Receptor-like Zn(Cys)4 Motifs in Bsl I Restriction Endonuclease. J. Mol. Biol. 334:595-603.
- Van Cott, E. M., and Wilson, G. G. (1988). Cloning the FnuDI, NaeI, NcoI and XbaI restriction-modification systems.
Gene 74:55-59.PubMed
ID:3074019
- van der Woerd, M.J., Pelletier, J.J., Xu, S. and Friedman, A.M. (2001). Restriction enzyme BsoBI-DNA complex:
a tunnel for recognition of degenerate DNA sequences and potential histidine catalysis. Structure 9(2):133-144.PubMed
ID:11250198
- Van Roey, P., Silva, G. H., Rao, V., Plummer, J., T.H., Tarention, A. L., and Guan, C. (1994). Crystallization
and Preliminary Crystallographic Analysis of Two Endo-b-N-acetylglucosaminidases, Endo H and Endo F1. J. Mol. Biol.
237:157-159.PubMed
ID:8133514
- Vargas-Serrato, E., Barnwell, J.W., Ingravallo, P., Perler, F.B. and Galinski, M.R. (2002). Merozoite surface
protein-9 of Plasmodium vivax and related simian malaria parasites is orthologous to p101/ABRA of P. falciparum.
Mol. Biochem. Parasitol. 120(1):41-52.PubMed
ID:11849704
- Venter, J.C., Roberts, R.J. et al. (2001). The sequence of the human genome. Science 291:1304-1351.PubMed
ID:11181995
- Viadiu, H., Kucera, R., Schildkraut, I. and Aggarwal, A.K. (2000). Crystallization of Restriction Endonuclease
BamHI with Nonspecific DNA. J. Struct. Biol. 130:81-85.PubMed
ID:10806094
- Vincze, T., Posfai, J. and Roberts, R.J. (2003). NEBcutter: A program to cleave DNA with restriction enzymes.
Nucl. Acids Res. 31:3688-3691. PubMed
ID:12824395
- Vitor, J. M. B., Polisson, C., Cabrita, J., and Silva, R. V. C. (1993). Restriction enzymes from Campylobacter
coli strains. Acta gastroenterol. belg. 56, 41.
- Vitor, J. M., and Morgan, R. D. (1995). Two novel restriction endonucleases from Campylobacter jejuni. Gene 157:109-110.PubMed
ID:7607469
- Wah, D. A., Hirsch, J. A., Dorner, L. F., Schildkraut, I., Aggarwal, A. K. (1997). Structure of the Multimodular
Endonuclease FokI Bound to DNA. Nature 388(6637):97-100.PubMed
ID:9214510
- Wah, D. A., Bitinaite, J., Schildkraut, I., Aggarwal, A. K. (1998). Structure of FokI has Implications for DNA
Cleavage. Proc. Natl. Acad. Sci. USA 95(18):10564-10569.PubMed
ID:9724743
- Waite-Rees, P. A., Keating, C. J., Moran, L. S., Slatko, B. E., Hornstra, L. J., and Benner, J. S. (1991). Chacterization
of Expression of the Escherichia coli Mrr Restriction System. J. Bacteriol. 173:5207-5219.PubMed
ID:1650347
- Wang, H. and Chong, S. (2003). Visualization of coupled protein folding and binding in bacteria and purification
of the heterodimeric complex.Proc. Natl. Acad. Sci. USA 100(2):478-483.PubMed
ID:12515863
- Ware, J.L., Moran, L., Lin, C.-L. and Slatko, B. (2000). Implementation of Automation in a Small-Scale DNA Sequencing
Core Facility. J. Biomolecular Techniques 11:151-154.
- Ware, J., Moran, L., Foster, J., Posfai, J., Vincze, T., Guiliano, D., Blaxter, M., Eisen, J. and Slatko, B.
(2002). Sequencing and analysis of a 63 kb bacterial artificial chromosome insert from the Wolbachia endosymbiont
of the human filarial parasite Brugia malayi. Int. J. Parasitol. 32(2):159-166.PubMed
ID:11812492
- Watson, R. J., Schildkraut, I., Qiang, B. Q., Martin, S. M., and Visentin, L. P. (1982). NdeI: a restriction
endonuclease from Neisseria denitrificans which cleaves DNA at 5'-CATATG-3' sequences. FEBS Lett. 150:114-116.PubMed
ID:6297965
- Wayne, J., and Xu, S. Y. (1997). Identification of a thermophilic plasmid origin and its cloning within a new
Thermus-E. coli shuttle vector. Gene 195:321-328.PubMed
ID:9305778
- Wayne, J., Holden, M., and Xu, S. Y. (1997). The Tsp45I restriction-modification system is plasmid-borne within
its thermophilic host. Gene 202:83-88.PubMed
ID:9427549
- Wei, A., Yuan, A., Fawcett, G., Butler, A., Davis, T., Xu, S.Y. and Salkoff, L. (Oct 2002). Efficient isolation
of targeted Caenorhabditis elegans deletion strains using highly thermostable restriction endonucleases and PCR.
Nucleic Acids Res. 30(20):e110.PubMed
ID:12384612
- Weng, Q.-P., Kozlowski, M., Belham, C., Zhang, A., Comb, M. J., Avruch, J. (1998). Regulation of the p70 S6 Kinase
by Phosphorylation in Vivo. J. Bio. Chem. 273(26):16621-16629.PubMed
ID:9632736
- Whitaker, R. D., Dorner, L. F. and Schildkraut, I. (1999). A Mutant of BamHI Restriction Endonuclease which Requires
N6-Methyladenine for Cleavage. J. Mol. Biol. 285:1525-1536.PubMed
ID:9917394
- Wilkie, S. D. and Landry, D. (1998). Determination of Certain Agarose-Immobilized Ligands by Use of Perchloric
Acid. Biochromatography 3:205-214.
- Williams, S. A., Slatko, B. E., Moran, L. S., and DeSimone, S. M. (1986). Sequencing in the Fast Lane: A Rapid
Protocol for [a-35S] dATP Dideoxy DNA Sequencing. BioTechniques 4:138-147.
- Williams, S. A., DeSimone, S. M., and McReynolds, L. A. (1988). Species-specific oligonucleotide probes for the
identification of human filarial parasites. Mol. Biochem. Parasitol. 28:163-169.PubMed
ID:3367934
- Williams, S. A., Poole, C.B., Landry, D., Glover, J., and McReynolds, L. A. (1993). Brugia malayi and Brugia
pahangi: synthetic biotin labeling of oligonucleotide probes for use in species-specific detection assays. Exp,
Parasitol. 77:235-245.PubMed
ID:8375491
- Williams, S. A. (1993). Workshop of DNA Probes and PCR for Detection of Filarial Parasies in Vectors (New England
Biolabs, Beverly, MA) pp. 1-27.
- Williams, S.A., Lizotte-Waniewski, M.R., Foster, J., Guiliano, D., Daub, J., Scott, A.L., Slatko, B. and Blaxter,
M.L. (2000). The filarial genome project: analysis of the nuclear, mitochondrial and endosymbiont genomes of Brugia
malayi. Int. J. Parasitol. 30:411-419.PubMed
ID:10731564
- Williamson, D. H., Wilson, R. J., Bates, P. A., McCready, S., Perler, F., and Qiang, B. Q. (1985). Nuclear and
Mitochondrial DNA of the Primate Malarial Parasite Plasmodium Knowlesi. Mol Biochem Parasitol. 14:199-209.PubMed
ID:2985981
- Wilson, G. G. (1988). Type II restriction-modification systems. Trends Genet. 4:314-318.PubMed
ID:3070854
- Wilson, G. G. (1988). Cloned restriction-modification systems - a review. Gene 74:281-289.PubMed
ID:3074014
- Wilson, G. G. (1991). Organization of restriction-modification systems. Nucl. Acids Res. 19:2539-2566.PubMed
ID:2041731
- Wilson, G. G., and Murray, N. E. (1991). Restriction and Modification Systems. Ann. Rev. Genet. 25:585-627.PubMed
ID:1812816
- Wilson, G. G. (1992). Amino acid sequence arrangements of DNA-methyltransferases. Methods Enzymol. 216:259-279.PubMed
ID:1479903
- Wong-Madden, S. T., and Landry, D. (1995). Purification and characterization of novel glycosidases from the bacterial
genus Xanthomonas. Glycobiology 5:19-28.PubMed
ID:7772864
- Wong-Madden, S. T., Landry, D., and Guthrie E. P. (1997). Discovery and Uses of Novel Glycosidases. Techniques
in Glycobiology pages 401-407.
- Wright, D.J., Jack, W.E. and Modrich P. (1999). The kinetic mechanism of EcoRI endonuclease. J. Biol. Chem. 274:31896-31902.PubMed
ID:10542216
- Wu, H., Xu, M-Q and Liu, X-Q (1998). Protein trans-splicing and functional mini-inteins of a cyanobacterial dnaB
intein. Biochim. et Biophys. Acta 35732:1-11.PubMed
ID:9748659
- Xia, Y., Morgan, R., Schildkraut, I., and Van Etten, J. L. (1988). A site-specific single strand endonuclease
activity induced by NYs-1 virus infection of a Chlorella-like green alga. Nucl. Acids Res. 16:9477-9487.PubMed
ID:3186439
- Xu, S. Y., and Schildkraut, I. (1991). Isolation of BamHI variants with reduced cleavage activities. J. Biol.
Chem. 266:4425-4429.PubMed
ID:1999426
- Xu, S. Y., and Schildkraut, I. (1991). Cofactor requirements of BamHI mutant endonuclease E77K and its suppressor
mutants. J. Bacteriol. 173:5030-5035.PubMed
ID:1907265
- Xu, M. Q., Southworth, M. W., Mersha, F. B., Hornstra, L. J., and Perler, F. B. (1993). In vitro protein splicing
of purified precursor and the identification of a branched intermediate. Cell 75:1371-1377.PubMed
ID:8269515
- Xu, S., and Schildkraut, I. (1993). Protecting Recognition Sequences on DNA by a Cleavage-Deficient Restriction
Endonuclease. BioTechniques 15:310-315.PubMed
ID:8396948
- Xu, S. Y., and Fomenkov, A. (1994). Construction of pSC101 derivatives with Camr and Tetr for selection or LacZ'
for blue/white screening. Biotechniques 17:57.PubMed
ID:7946313
- Xu, M. Q., Comb, D. G., Paulus, H., Noren, C. J., Shao, Y., and Perler, F. B. (1994). Protein splicing: an analysis
of the branched intermediate and its resolution by succinimide formation. EMBO J. 13:5517-5522.PubMed
ID:7988548
- Xu, M. Q., and Perler, F. B. (1996). The mechanism of protein splicing and its modulation by mutation. EMBO J.
15:5146-5153.PubMed
ID:8895558
- Xu, S. Y., Xiao, J. P., Posfai, J., Maunus, R., and Benner, J. (1997). Cloning of the BssHII restriction-modification
system in Escherichia coli: BssHII methyltransferase contains circularly permuted cytosine-5 methyltransferase
motifs. Nucl. Acids Res. 25:3991-3994.PubMed
ID:9321648
- Xu, S. Y., Xiao, Ettwiller L., holden, M., Aliotta, J., Poh, C. L., Dalton, M., Robinson, D. P., Petronzio, T.
R., Moran, L., Ganatra, M., Ware, J., Slatko, B. and Benner, J. (Nov. 1998). Cloning and expression of the ApaLI,
NspI, NspHI, SacI, ScaI and SapI restriction-modification systems in Escherichia coli. Mol. Gen. Genet. 260:226-231.PubMed
ID:9862476
- Xu, M. Q., Buckley, D., Guan, C. and Guo, H-C (1999). Structural Insights into the Mechanism of Intramolecular
Proteolysis. Cell 98:651-661.PubMed
ID:10490104
- Xu, Q., Stickel, S., Roberts, R.J., Blaser, M.J. and Morgan, R.D. (2000). Purification of the Novel Endonuclease,
Hpy188I, and Cloning of Its Restriction-Modification Genes Reveal Evidence of Its Horizontal Transfer to the Helicobacter
pylori Genome. J. Biol. Chem. 275(22):17086-17093.PubMed
ID:10748211
- Xu, Q., Morgan, R.D., Roberts, R.J. and Blaser, M.J. (2000A). Identification of type II restriction and modification
systems in Helicobacter pylori reveals their substantial diversity among strains. Proc. Natl. Acad. Sci. USA 97:9671-9676.PubMed
ID:10944229
- Xu, M. Q., Paulus, H. and Chong, S. (2000). Fusions to Self-Splicing Inteins for Protein Purification. Methods
in Enzymology 326:376-418.PubMed
ID:11036654
- Xu, M. Q. and T.C. Evans, Jr. (2001). Intein-Mediated Ligation and Cyclization of Expressed Proteins. Methods
24:257-277.PubMed
ID:11403575
- Xu, M. Q., Chong, S. and T.C. Evans, Jr. (2001). Protein splicing. Encyclopedia of Genetics.
- Xu, M.Q., Ghosh, I., Kochinyan, S. and Sun, L. Intein-mediated Peptide Arrays for Epitope Mapping and Kinase-Phosphatase
Assays. Methods in Molecular Biology, vol., Microarrays: Methods and Protocols Edited by J.B. Rampal. Humana Press
Inc., Totowa, NY. In press.
- Xu, Y.,
Lunnen, K. and Kong, H. (2001). Engineering a Nicking Endonuclease N.AlwI by Domain Swapping. Proc. Natl. Acad.
Sci. USA 98:12990-12995.PubMed
ID:11687651
- Xu, Q., Morgan, R.D., Roberts, R.J., Xu, S.Y., van Doorn, L.J., Donahue, J.P., Miller, G.G. and Blaser, M.J.
(2002). Functional analysis of iceA1, a CATG-recognizing restriction endonuclease gene in Helicobacter pylori.
Nucl. Acids Res. 30(17):3839-3847.PubMed
ID:12202769
- Xu, M.-Q. and Evans, T.C., Jr. (2003). Purification of recombinant proteins from E. coli by engineered inteins.
Methods Mol. Biol. 205:43-68.PubMed
ID:12491879
- Yuan, J.M., Li, Z.Y., Wang, Y.M. and Xu., M.-Q. (2000). One step purification of recombinant human Neurotrophic
factor-3 with the splicing function of intein. Chin. J. Biochem. Mol. Biol. 16:335-339
- Zardo, G.,
Reale, A., Passananti, C., Pradhan, S., Bountempo, S., DeMatteis, G., Adams, R.L.P. and Caiafa, P. (2002). Inhibition
of poly(ADP-ribosyl)ation induces DNA hypermethylation: a possible molecular mechanism. FASEB J. 16(10):1319-1321.PubMed
ID:12154007
- Zehr, J. P., and McReynolds, L. A. (1989). Use of Degenerate Oligonucleotides for Amplification of the nifH Gene
from the Marine Cyanobacterium Trichodesmium thiebautii. Appl. Environ. Microbiol., 55:2522-2526.PubMed
ID:2513774
- Zhang, A., Gonzales, S.M., Cantor, E.J. and Chong, S. (2001). Construction of a mini-intein fusion system to
allow both direct monitoring of soluble protein expression and rapid purification of target proteins. Gene 275:241-252. PubMed
ID:11587851
- Zhang, B., Tao, T., Wilson, G. G., and Blumenthal, R. M. (1993). The M.AluI DNA-(cytosine C5)-methyltransferse
has an unusually large, partially dispensable, variable region. Nucl. Acids Res. 21:905-911. PubMed
ID:8451189
- Zheng, Y., Szustakowski, J.D., Fortnow, L., Roberts, R.J. and Kasif, S. (2002). Computational Identification
of Operons in Microbial Genomes. Genome Research 12:1221-1230.PubMed
ID:12176930
- Zheng, Y., Roberts, R.J. and Kasif, S. (2002A). Genomic functional annotation using co-evolution profiles of
gene clusters. Genome Biology 3(11):RESEARCH0060.PubMed
ID:12429059
- Zhou, D.-M., Yi, X.-Y., Zeng, X.-F., Wang, M., Cai, C., Wang, Q.-L., Zhang, S.-K., McReynolds, L. (2002). Cloning,
Expression and Immunization of the new antigen gene Sj-Ts4 of Schistosoma japonicum. Acta Biochimica et Biophysica
Sinica 34(2):143-148.
- Zhu, Z., Zhou, J., Friedman, A.M. and Xu, S.-Y. (2003). Isolation of BsoBI restriction endonuclease variants
with altered substrate specificity. J. Mol. Biol. 330(2):359-372. PubMed
ID:12823974
- Zwick, M.B., Bonnycastle, L.L.C., Noren, K.A., Venturini, S., Leong, E., Barbas, C.F., Noren, C.J. and Scott,
J.K. (1998). The Maltoxe-Binding Protein as a Scaffold for Monovalent Display of Peptides Derived from Phage Libraries.
Anal. Biochem. 264:87-97. PubMed
ID:9784192
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